Psyllid ID: psy6450

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MNLIPPLITLHDLTQKAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccEEEEEEEcccccccccccccccEEEEEEcccccccEEEEccEEEEEccccEEEccccccccEEEEcccccccccccccccccEEEEEccccccEEEEEccccEEEEEEcccEEEc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHcccccccccccccEEEEcccEccccccEccEccccEEEEEEcccccEEEEEEccEEEEEEHHHEEEccccccEEEEEEEcEcccccccEEEEccEEEEEcccccccEEEEEcccccEEEEcHHHHHcc
Coil and Loop (DISEMBL)
mnlipplitlhdLTQKAHRLLPTNLFVVLYNFksrhadeldlkpgykvtvidtsdqnwwkgkcmgrvgyfpsnyvikvqpgerplqvthnlqiadgesglsLLRDQIVIQIGDEVDGMVMirngenrqgvcplkylqev
Flexible Loop (DISEMBL)
MNLIPPLITLHDLTQKAHRLLPTNLFVVLYNFKSrhadeldlkpgyKVTVidtsdqnwwkgKCMGRVGYFPSNYVIKVQPGERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRngenrqgvcplkylqev
Low Complexity Region (SEG)
MNLIPPLITLHDLTQKAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV
Disordered region (IsUnstruct)
***IPPLITLHDLTQKAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKY****
Disordered Region (DISOPRED)
***IP********************FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV
Disordered Region (DISEMBL)
MNLIPPLITLHDLTQKAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV
Disordered Region (DISPRO)
*****PL**L****QKAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNLIPPLITLHDLTQKAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	139	2.2.26 [Sep-21-2011]
Q68F99	337	SH3 and cysteine-rich dom	yes	N/A	0.848	0.350	0.413	2e-23
Q96MF2	364	SH3 and cysteine-rich dom	yes	N/A	0.827	0.315	0.432	1e-22
Q8BZ71	360	SH3 and cysteine-rich dom	yes	N/A	0.827	0.319	0.432	2e-22
Q6ZMT1	411	SH3 and cysteine-rich dom	no	N/A	0.841	0.284	0.333	3e-16
A0JNJ1	403	SH3 and cysteine-rich dom	no	N/A	0.848	0.292	0.302	6e-16
Q99469	402	SH3 and cysteine-rich dom	no	N/A	0.848	0.293	0.294	2e-15
P97306	403	SH3 and cysteine-rich dom	no	N/A	0.848	0.292	0.319	3e-15
Q8R1B0	408	SH3 and cysteine-rich dom	no	N/A	0.841	0.286	0.325	3e-15
Q6XJU9	214	Osteoclast-stimulating fa	N/A	N/A	0.597	0.387	0.386	4e-11
Q5ZJJ9	202	Osteoclast-stimulating fa	no	N/A	0.625	0.430	0.393	8e-11

>sp|Q68F99|STAC3_XENTR SH3 and cysteine-rich domain-containing protein 3 OS=Xenopus tropicalis GN=stac3 PE=2 SV=1

 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/121 (41%), Positives = 82/121 (67%), Gaps = 3/121 (2%)

Query: 20  LLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQ 79
            + ++ FV LY FK+   D+LD + G ++TVID S++ WW+GK   + GYFP+N++I+V+
Sbjct: 219 FMQSHYFVALYRFKALEKDDLDFQAGERITVIDDSNEEWWRGKVGEKAGYFPANFIIRVR 278

Query: 80  PGERPLQVTHNLQIADGESG-LSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQE 138
             ER  +VT +  + + E G ++L +DQIV+Q GDEV+G + +  G  + G+ PL +LQE
Sbjct: 279 AAERVYKVTRSF-VGNREIGQITLKKDQIVVQKGDEVNGYIKVSTGR-KVGLFPLDFLQE 336

Query: 139 V 139
           +
Sbjct: 337 I 337

Xenopus tropicalis (taxid: 8364)

>sp|Q96MF2|STAC3_HUMAN SH3 and cysteine-rich domain-containing protein 3 OS=Homo sapiens GN=STAC3 PE=1 SV=1

 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 79/118 (66%), Gaps = 3/118 (2%)

Query: 23  TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
           ++ FV LY FK+   D+LD  PG K+TVID S++ WW+GK   +VG+FP N++I+V+ GE
Sbjct: 249 SHYFVALYRFKALEKDDLDFPPGEKITVIDDSNEEWWRGKIGEKVGFFPPNFIIRVRAGE 308

Query: 83  RPLQVTHNLQIADGESG-LSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV 139
           R  +VT +  + + E G ++L +DQIV+Q GDE  G V +  G  + G+ P  +L+E+
Sbjct: 309 RVHRVTRSF-VGNREIGQITLKKDQIVVQKGDEAGGYVKVYTG-RKVGLFPTDFLEEI 364

Homo sapiens (taxid: 9606)

>sp|Q8BZ71|STAC3_MOUSE SH3 and cysteine-rich domain-containing protein 3 OS=Mus musculus GN=Stac3 PE=2 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 79/118 (66%), Gaps = 3/118 (2%)

Query: 23  TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
           ++ FV LY FK+   D+LD  PG K+TVID S++ WW+GK   +VG+FP N++I+V+ GE
Sbjct: 245 SHYFVALYRFKALEKDDLDFPPGEKITVIDDSNEEWWRGKIGEKVGFFPPNFIIRVRAGE 304

Query: 83  RPLQVTHNLQIADGESG-LSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV 139
           R  +VT +  + + E G ++L +DQIV+Q GDE  G V +  G  + G+ P  +L+E+
Sbjct: 305 RVHRVTRSF-VGNREIGQITLKKDQIVVQKGDEAGGYVKVYTG-RKVGLFPTDFLEEI 360

Mus musculus (taxid: 10090)

>sp|Q6ZMT1|STAC2_HUMAN SH3 and cysteine-rich domain-containing protein 2 OS=Homo sapiens GN=STAC2 PE=2 SV=1

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 71/120 (59%), Gaps = 3/120 (2%)

Query: 22  PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG 81
           P   +V LY F  +  ++L L+PG ++ ++D S+++WWKGK   RVG+FP+N+V +V+PG
Sbjct: 293 PMYSYVALYKFLPQENNDLALQPGDRIMLVDDSNEDWWKGKIGDRVGFFPANFVQRVRPG 352

Query: 82  ERPLQVTHNLQIADGESGLSLLRDQIVIQIG--DEVDGMVMIRNGENRQGVCPLKYLQEV 139
           E   +          +  +SL  +QI + +G   + DG + + +G+ R G+ P+  L E+
Sbjct: 353 ENVWRCCQPFSGNKEQGYMSLKENQICVGVGRSKDADGFIRVSSGKKR-GLVPVDALTEI 411

Homo sapiens (taxid: 9606)

>sp|A0JNJ1|STAC_BOVIN SH3 and cysteine-rich domain-containing protein OS=Bos taurus GN=STAC PE=2 SV=1

 Score = 82.8 bits (203), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 70/119 (58%), Gaps = 1/119 (0%)

Query: 21  LPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
           L  N +V LY F  +  ++L+++PG  +T+++ S+++WWKGK   R+G+FP+N+V +V  
Sbjct: 286 LQMNTYVALYKFVPQENEDLEMRPGDMITLLEDSNEDWWKGKIQDRIGFFPANFVQRVHQ 345

Query: 81  GERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV 139
            E+  +          +  ++L  +QI +   +E DG + + +G+ R G+ PL  L+ +
Sbjct: 346 NEKIFRCVRTFSGCKEQGQITLKENQICVASEEEQDGFIRVLSGKKR-GLVPLDVLENI 403

Probably involved in a neuron-specific signal transduction.

Bos taurus (taxid: 9913)

>sp|Q99469|STAC_HUMAN SH3 and cysteine-rich domain-containing protein OS=Homo sapiens GN=STAC PE=1 SV=1

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 72/119 (60%), Gaps = 1/119 (0%)

Query: 21  LPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
           L  N +V LY F  +  ++L+++PG  +T+++ S+++WWKGK   R+G+FP+N+V ++Q 
Sbjct: 285 LQMNTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRLQQ 344

Query: 81  GERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV 139
            E+  +          +  ++L  +QI +   +E DG + + +G+ ++G+ PL  L+ +
Sbjct: 345 NEKIFRCVRTFIGCKEQGQITLKENQICVSSEEEQDGFIRVLSGK-KKGLIPLDVLENI 402

Probably involved in a neuron-specific signal transduction.

Homo sapiens (taxid: 9606)

>sp|P97306|STAC_MOUSE SH3 and cysteine-rich domain-containing protein OS=Mus musculus GN=Stac PE=2 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 71/119 (59%), Gaps = 1/119 (0%)

Query: 21  LPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
           L  N +V LY F  +  ++L+++PG  +T+++ S+++WWKGK   RVG+FP+N+V +V+ 
Sbjct: 286 LQMNTYVALYRFIPQENEDLEMRPGDMITLLEDSNEDWWKGKIQDRVGFFPANFVQRVEE 345

Query: 81  GERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV 139
            E+  +          +  ++L  +QI +   +E DG + + +G+ R G+ PL  L +V
Sbjct: 346 HEKIYRCVRTFIGCKDQGQITLKENQICVTSEEEQDGFIRVLSGKKR-GLVPLDVLVDV 403

Probably involved in a neuron-specific signal transduction.

Mus musculus (taxid: 10090)

>sp|Q8R1B0|STAC2_MOUSE SH3 and cysteine-rich domain-containing protein 2 OS=Mus musculus GN=Stac2 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 69/120 (57%), Gaps = 3/120 (2%)

Query: 22  PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG 81
           P   +V LY F  +  ++L L+PG ++ ++D S+++WWKGK   RVG+FP+N+V +V+PG
Sbjct: 290 PMYSYVALYKFLPQENNDLALQPGDRIMLVDDSNEDWWKGKIGDRVGFFPANFVQRVRPG 349

Query: 82  ERPLQVTHNLQIADGESGLSLLRDQIVIQI--GDEVDGMVMIRNGENRQGVCPLKYLQEV 139
           E   +          +  +SL  +QI + +    + DG + + +G+ R G+ P   L E+
Sbjct: 350 ENVWRCCQPFSGNKEQGYMSLKENQICVGVSRSKDSDGFIRVSSGKKR-GLVPADSLAEI 408

Mus musculus (taxid: 10090)

>sp|Q6XJU9|OSTF1_MONAL Osteoclast-stimulating factor 1 OS=Monopterus albus GN=ostf1 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 5/88 (5%)

Query: 25  LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERP 84
           +F  L+ F  R  DEL  + G  + + DTSD NWWKG C GR G  PSNYV      E+ 
Sbjct: 16  VFRALFTFDPRTPDELYFEEGDILYISDTSDTNWWKGTCRGRTGLIPSNYV-----AEQA 70

Query: 85  LQVTHNLQIADGESGLSLLRDQIVIQIG 112
             + H +  A     LS LR+ +  ++G
Sbjct: 71  ETIDHPMHEAAKRGNLSWLRECVENKVG 98

Induces bone resorption, acting probably through a signaling cascade which results in the secretion of factor(s) enhancing osteoclast formation and activity.

Monopterus albus (taxid: 43700)

>sp|Q5ZJJ9|OSTF1_CHICK Osteoclast-stimulating factor 1 OS=Gallus gallus GN=OSTF1 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 50/94 (53%), Gaps = 7/94 (7%)

Query: 25  LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERP 84
           +F  LY F+ R  DEL  + G  + + D SD NWWKG C GR G  PSNYV      E+ 
Sbjct: 16  VFRALYTFEPRTPDELYFEEGDIIYISDMSDTNWWKGTCKGRTGLIPSNYV-----AEQA 70

Query: 85  LQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGM 118
             + + L  A     LS LR+ +  Q+G  V+G+
Sbjct: 71  ESIDNPLHEAAKRGNLSWLRECLDNQVG--VNGL 102

Induces bone resorption, acting probably through a signaling cascade which results in the secretion of factor(s) enhancing osteoclast formation and activity.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
189240758	207	PREDICTED: similar to AGAP005258-PA [Tri	0.906	0.608	0.793	3e-56
158292896	908	AGAP005258-PA [Anopheles gambiae str. PE	0.899	0.137	0.75	3e-54
312385294	969	hypothetical protein AND_00939 [Anophele	0.892	0.127	0.740	5e-53
195384653	971	GJ22474 [Drosophila virilis] gi|19414582	0.906	0.129	0.718	1e-52
195028179	228	GH20240 [Drosophila grimshawi] gi|193902	0.913	0.557	0.720	5e-52
195455382	265	GK23022 [Drosophila willistoni] gi|19417	0.899	0.471	0.724	6e-52
195120532	230	GI19409 [Drosophila mojavensis] gi|19390	0.913	0.552	0.713	1e-51
195172668	905	GL20070 [Drosophila persimilis] gi|19411	0.899	0.138	0.700	2e-51
442623781	1166	CG43729, isoform H [Drosophila melanogas	0.913	0.108	0.713	4e-51
198459364	972	GA20872 [Drosophila pseudoobscura pseudo	0.913	0.130	0.689	6e-51

>gi|189240758|ref|XP_969148.2| PREDICTED: similar to AGAP005258-PA [Tribolium castaneum]

 Score =  223 bits (567), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 100/126 (79%), Positives = 118/126 (93%)

Query: 14  TQKAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSN 73
           + K+HRLLPTNL+VVLYNFKSRH DELDLK GYKVTVIDTSD +WWKGKC+GRVG+FPS 
Sbjct: 82  SPKSHRLLPTNLYVVLYNFKSRHQDELDLKAGYKVTVIDTSDPDWWKGKCLGRVGFFPSK 141

Query: 74  YVIKVQPGERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPL 133
           YV K+ PGE+PLQVTHNLQ++DG++GL LLRDQIVIQIG+E+DGMVMIR+G+NRQGVCP+
Sbjct: 142 YVSKLSPGEKPLQVTHNLQVSDGDNGLMLLRDQIVIQIGEELDGMVMIRSGDNRQGVCPV 201

Query: 134 KYLQEV 139
           K+LQEV
Sbjct: 202 KFLQEV 207

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158292896|ref|XP_314176.4| AGAP005258-PA [Anopheles gambiae str. PEST] gi|157017207|gb|EAA09368.4| AGAP005258-PA [Anopheles gambiae str. PEST]

 Score =  216 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 96/128 (75%), Positives = 112/128 (87%), Gaps = 3/128 (2%)

Query: 15  QKAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNY 74
           QK+HRLLPTNL+VVLYNFKSRH DELDLK GYKVTVIDTSD +WWKGKC+G+VGYFPS Y
Sbjct: 32  QKSHRLLPTNLYVVLYNFKSRHQDELDLKAGYKVTVIDTSDPDWWKGKCLGKVGYFPSKY 91

Query: 75  VIKVQPGERPLQVTHNLQIADGESG---LSLLRDQIVIQIGDEVDGMVMIRNGENRQGVC 131
             K+   E+PLQVTHNLQ+ D E G   L+LLRDQIVIQ+GDEV+GMVM+R+ +NRQGVC
Sbjct: 92  CAKLAASEKPLQVTHNLQVTDNERGDGTLTLLRDQIVIQVGDEVNGMVMVRSADNRQGVC 151

Query: 132 PLKYLQEV 139
           P+KYLQE+
Sbjct: 152 PVKYLQEM 159

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312385294|gb|EFR29830.1| hypothetical protein AND_00939 [Anopheles darlingi]

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 94/127 (74%), Positives = 111/127 (87%), Gaps = 3/127 (2%)

Query: 15  QKAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNY 74
           QK+HRLLPTNL+VVLYNFKSRH DELDLK GYKVTVIDTSD +WWKGKC+G+VGYFPS Y
Sbjct: 32  QKSHRLLPTNLYVVLYNFKSRHQDELDLKAGYKVTVIDTSDPDWWKGKCLGKVGYFPSKY 91

Query: 75  VIKVQPGERPLQVTHNLQIADGESG---LSLLRDQIVIQIGDEVDGMVMIRNGENRQGVC 131
             K+   E+PLQVTHNLQ+ D E G   L+LLRDQIVIQ+G+E++GMVM+R+ +NRQGVC
Sbjct: 92  CAKLAASEKPLQVTHNLQVTDNERGEGTLTLLRDQIVIQVGEELNGMVMVRSADNRQGVC 151

Query: 132 PLKYLQE 138
           P+KYLQE
Sbjct: 152 PVKYLQE 158

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195384653|ref|XP_002051029.1| GJ22474 [Drosophila virilis] gi|194145826|gb|EDW62222.1| GJ22474 [Drosophila virilis]

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 92/128 (71%), Positives = 113/128 (88%), Gaps = 2/128 (1%)

Query: 13  LTQKAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPS 72
           L+ K+HRLLPTNL+V+LYNFK+RHADELDLK GYKVTVIDTSD +WWKGK +GRVG+FPS
Sbjct: 100 LSPKSHRLLPTNLYVILYNFKARHADELDLKAGYKVTVIDTSDPDWWKGKVLGRVGFFPS 159

Query: 73  NYVIKVQPGERPLQVTHNLQIADGESG--LSLLRDQIVIQIGDEVDGMVMIRNGENRQGV 130
            Y +++   E+PLQVTHNLQ++DGE G  ++LLRDQIVIQ GDEV+GMVM+R+ +NRQG 
Sbjct: 160 KYCVRLNANEKPLQVTHNLQVSDGERGENMTLLRDQIVIQTGDEVNGMVMVRSADNRQGY 219

Query: 131 CPLKYLQE 138
           CP+KYLQE
Sbjct: 220 CPIKYLQE 227

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195028179|ref|XP_001986954.1| GH20240 [Drosophila grimshawi] gi|193902954|gb|EDW01821.1| GH20240 [Drosophila grimshawi]

 Score =  208 bits (530), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 93/129 (72%), Positives = 114/129 (88%), Gaps = 2/129 (1%)

Query: 13  LTQKAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPS 72
           L+ K+HRLLPTNL+V+LYNFK+RHADELDLK GYKVTVIDTSD +WWKGK +GRVG+FPS
Sbjct: 100 LSPKSHRLLPTNLYVILYNFKARHADELDLKAGYKVTVIDTSDPDWWKGKVLGRVGFFPS 159

Query: 73  NYVIKVQPGERPLQVTHNLQIADGESG--LSLLRDQIVIQIGDEVDGMVMIRNGENRQGV 130
            Y +++   E+PLQVTHNLQ++DGE G  ++LLRDQIVIQ GDEV+GMVM+R+ +NRQG 
Sbjct: 160 KYCVRLNANEKPLQVTHNLQVSDGERGENMTLLRDQIVIQTGDEVNGMVMVRSADNRQGY 219

Query: 131 CPLKYLQEV 139
           CP+KYLQEV
Sbjct: 220 CPIKYLQEV 228

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195455382|ref|XP_002074698.1| GK23022 [Drosophila willistoni] gi|194170783|gb|EDW85684.1| GK23022 [Drosophila willistoni]

 Score =  208 bits (530), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 92/127 (72%), Positives = 113/127 (88%), Gaps = 2/127 (1%)

Query: 15  QKAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNY 74
           QK+HRLLPTNL+V+LYNFK+RHADELDLK GYKVTVIDT+D +WWKGK +GRVG+FPS Y
Sbjct: 139 QKSHRLLPTNLYVILYNFKARHADELDLKAGYKVTVIDTADPDWWKGKVLGRVGFFPSKY 198

Query: 75  VIKVQPGERPLQVTHNLQIADGESG--LSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCP 132
            +++   E+PLQVTHNLQ++DGE G  ++LLRDQIVIQ GDEV+GMVM+R+ +NRQG CP
Sbjct: 199 CVRLNANEKPLQVTHNLQVSDGERGENMTLLRDQIVIQTGDEVNGMVMVRSADNRQGYCP 258

Query: 133 LKYLQEV 139
           +KYLQEV
Sbjct: 259 IKYLQEV 265

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195120532|ref|XP_002004778.1| GI19409 [Drosophila mojavensis] gi|193909846|gb|EDW08713.1| GI19409 [Drosophila mojavensis]

 Score =  207 bits (526), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 92/129 (71%), Positives = 114/129 (88%), Gaps = 2/129 (1%)

Query: 13  LTQKAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPS 72
           L+ K+HRLLPTNL+V+LYNFK+RHADELDLK GYKVTVIDT+D +WWKGK +GRVG+FPS
Sbjct: 102 LSPKSHRLLPTNLYVILYNFKARHADELDLKAGYKVTVIDTADPDWWKGKVLGRVGFFPS 161

Query: 73  NYVIKVQPGERPLQVTHNLQIADGESG--LSLLRDQIVIQIGDEVDGMVMIRNGENRQGV 130
            Y +++   E+PLQVTHNLQ++DGE G  ++LLRDQIVIQ GDEV+GMVM+R+ +NRQG 
Sbjct: 162 KYCVRLNANEKPLQVTHNLQVSDGERGENMTLLRDQIVIQTGDEVNGMVMVRSADNRQGY 221

Query: 131 CPLKYLQEV 139
           CP+KYLQEV
Sbjct: 222 CPIKYLQEV 230

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195172668|ref|XP_002027118.1| GL20070 [Drosophila persimilis] gi|194112931|gb|EDW34974.1| GL20070 [Drosophila persimilis]

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 89/127 (70%), Positives = 111/127 (87%), Gaps = 2/127 (1%)

Query: 15  QKAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNY 74
           QK+HRLLPTNL+V+LYNFK+RH DELDLK GYKVTVIDTSD +WWKGK +GRVG+FPS Y
Sbjct: 32  QKSHRLLPTNLYVILYNFKARHPDELDLKAGYKVTVIDTSDPDWWKGKVLGRVGFFPSKY 91

Query: 75  VIKVQPGERPLQVTHNLQIADGESG--LSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCP 132
            +++   E+PLQVTHNLQ++DGE    ++LLRDQIVIQ+GDEV+GM M+R+ +NRQG CP
Sbjct: 92  CVRLNASEKPLQVTHNLQVSDGERSDKITLLRDQIVIQVGDEVNGMCMVRSADNRQGYCP 151

Query: 133 LKYLQEV 139
           +KYLQE+
Sbjct: 152 VKYLQEI 158

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442623781|ref|NP_001260994.1| CG43729, isoform H [Drosophila melanogaster] gi|440214411|gb|AGB93526.1| CG43729, isoform H [Drosophila melanogaster]

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 92/129 (71%), Positives = 109/129 (84%), Gaps = 2/129 (1%)

Query: 13   LTQKAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPS 72
            L+ K HRLLPTNL+V++YNFK+RHADELDLK GYKVTVID SD +WWKGK +GRVGYFPS
Sbjct: 1038 LSPKTHRLLPTNLYVIIYNFKARHADELDLKAGYKVTVIDNSDPDWWKGKVLGRVGYFPS 1097

Query: 73   NYVIKVQPGERPLQVTHNLQIADGESG--LSLLRDQIVIQIGDEVDGMVMIRNGENRQGV 130
             Y +++   E+PLQVTHNLQ++D E G  L+LLRDQIVIQ GDEV+GMVMIR  E+ QG 
Sbjct: 1098 KYCVRLNANEKPLQVTHNLQVSDSERGENLTLLRDQIVIQTGDEVNGMVMIRAAEHGQGY 1157

Query: 131  CPLKYLQEV 139
            CP+KYLQEV
Sbjct: 1158 CPIKYLQEV 1166

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198459364|ref|XP_001361349.2| GA20872 [Drosophila pseudoobscura pseudoobscura] gi|198136668|gb|EAL25927.2| GA20872 [Drosophila pseudoobscura pseudoobscura]

 Score =  205 bits (521), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 89/129 (68%), Positives = 112/129 (86%), Gaps = 2/129 (1%)

Query: 13  LTQKAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPS 72
           L+ K+HRLLPTNL+V+LYNFK+RH DELDLK GYKVTVIDTSD +WWKGK +GRVG+FPS
Sbjct: 102 LSPKSHRLLPTNLYVILYNFKARHPDELDLKAGYKVTVIDTSDPDWWKGKVLGRVGFFPS 161

Query: 73  NYVIKVQPGERPLQVTHNLQIADGESG--LSLLRDQIVIQIGDEVDGMVMIRNGENRQGV 130
            Y +++   E+PLQVTHNLQ++DGE    ++LLRDQIVIQ+GDEV+GM M+R+ +NRQG 
Sbjct: 162 KYCVRLNASEKPLQVTHNLQVSDGERSDKITLLRDQIVIQVGDEVNGMCMVRSADNRQGY 221

Query: 131 CPLKYLQEV 139
           CP+KYLQE+
Sbjct: 222 CPVKYLQEI 230

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
UNIPROTKB|I3L5Y5	365	STAC3 "Uncharacterized protein	0.827	0.315	0.432	3.8e-23
UNIPROTKB|I3LLH4	364	STAC3 "Uncharacterized protein	0.827	0.315	0.432	3.8e-23
UNIPROTKB|E1BCH2	362	STAC3 "Uncharacterized protein	0.827	0.317	0.432	6.1e-23
UNIPROTKB|E2R3U5	363	STAC3 "Uncharacterized protein	0.827	0.316	0.432	6.1e-23
UNIPROTKB|Q96MF2	364	STAC3 "SH3 and cysteine-rich d	0.827	0.315	0.432	6.1e-23
MGI|MGI:3606571	360	Stac3 "SH3 and cysteine rich d	0.827	0.319	0.432	6.1e-23
RGD|1308964	361	Stac3 "SH3 and cysteine rich d	0.827	0.318	0.432	6.1e-23
UNIPROTKB|J9NYP7	363	STAC3 "Uncharacterized protein	0.827	0.316	0.415	6.3e-21
ZFIN|ZDB-GENE-040801-248	334	stac3 "SH3 and cysteine rich d	0.827	0.344	0.372	1.5e-19
UNIPROTKB|I3LTV8	367	STAC "Uncharacterized protein"	0.841	0.318	0.341	1.2e-17

UNIPROTKB|I3L5Y5 STAC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 51/118 (43%), Positives = 79/118 (66%)

Query:    23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
             ++ FV LY FK+   D+LD  PG K+TVID S++ WW+GK   +VG+FP N++I+V+ GE
Sbjct:   250 SHYFVALYRFKALEKDDLDFPPGEKITVIDDSNEEWWRGKIGEKVGFFPPNFIIRVRSGE 309

Query:    83 RPLQVTHNLQIADGESG-LSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV 139
             R  +VT +  + + E G ++L +DQIV+Q GDE  G V +  G  + G+ P  +L+E+
Sbjct:   310 RVHRVTRSF-VGNREIGQITLKKDQIVVQKGDEAGGYVKVYTGR-KMGLFPTDFLEEI 365

GO:0042802 "identical protein binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

UNIPROTKB|I3LLH4 STAC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 51/118 (43%), Positives = 79/118 (66%)

Query:    23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
             ++ FV LY FK+   D+LD  PG K+TVID S++ WW+GK   +VG+FP N++I+V+ GE
Sbjct:   249 SHYFVALYRFKALEKDDLDFPPGEKITVIDDSNEEWWRGKIGEKVGFFPPNFIIRVRSGE 308

Query:    83 RPLQVTHNLQIADGESG-LSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV 139
             R  +VT +  + + E G ++L +DQIV+Q GDE  G V +  G  + G+ P  +L+E+
Sbjct:   309 RVHRVTRSF-VGNREIGQITLKKDQIVVQKGDEAGGYVKVYTGR-KMGLFPTDFLEEI 364

GO:0046872 "metal ion binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

UNIPROTKB|E1BCH2 STAC3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 51/118 (43%), Positives = 79/118 (66%)

Query:    23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
             ++ FV LY FK+   D+LD  PG K+TVID S++ WW+GK   +VG+FP N++I+V+ GE
Sbjct:   247 SHYFVALYRFKALEKDDLDFPPGEKITVIDDSNEEWWRGKIGEKVGFFPPNFIIRVRAGE 306

Query:    83 RPLQVTHNLQIADGESG-LSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV 139
             R  +VT +  + + E G ++L +DQIV+Q GDE  G V +  G  + G+ P  +L+E+
Sbjct:   307 RVHRVTRSF-VGNREIGQITLKKDQIVVQKGDETGGYVKVYTGR-KVGLFPTDFLEEI 362

GO:0042802 "identical protein binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

UNIPROTKB|E2R3U5 STAC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 51/118 (43%), Positives = 79/118 (66%)

Query:    23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
             ++ FV LY FK+   D+LD  PG K+TVID S++ WW+GK   +VG+FP N++I+V+ GE
Sbjct:   248 SHYFVALYRFKALEKDDLDFPPGEKITVIDDSNEEWWRGKIGEKVGFFPPNFIIRVRAGE 307

Query:    83 RPLQVTHNLQIADGESG-LSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV 139
             R  +VT +  + + E G ++L +DQIV+Q GDE  G V +  G  + G+ P  +L+E+
Sbjct:   308 RVHRVTRSF-VGNREIGQITLKKDQIVVQKGDEAGGYVKVYTGR-KVGLFPTDFLEEI 363

GO:0046872 "metal ion binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

UNIPROTKB|Q96MF2 STAC3 "SH3 and cysteine-rich domain-containing protein 3" [Homo sapiens (taxid:9606)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 51/118 (43%), Positives = 79/118 (66%)

Query:    23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
             ++ FV LY FK+   D+LD  PG K+TVID S++ WW+GK   +VG+FP N++I+V+ GE
Sbjct:   249 SHYFVALYRFKALEKDDLDFPPGEKITVIDDSNEEWWRGKIGEKVGFFPPNFIIRVRAGE 308

Query:    83 RPLQVTHNLQIADGESG-LSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV 139
             R  +VT +  + + E G ++L +DQIV+Q GDE  G V +  G  + G+ P  +L+E+
Sbjct:   309 RVHRVTRSF-VGNREIGQITLKKDQIVVQKGDEAGGYVKVYTGR-KVGLFPTDFLEEI 364

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0042802 "identical protein binding" evidence=IPI

MGI|MGI:3606571 Stac3 "SH3 and cysteine rich domain 3" [Mus musculus (taxid:10090)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 51/118 (43%), Positives = 79/118 (66%)

Query:    23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
             ++ FV LY FK+   D+LD  PG K+TVID S++ WW+GK   +VG+FP N++I+V+ GE
Sbjct:   245 SHYFVALYRFKALEKDDLDFPPGEKITVIDDSNEEWWRGKIGEKVGFFPPNFIIRVRAGE 304

Query:    83 RPLQVTHNLQIADGESG-LSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV 139
             R  +VT +  + + E G ++L +DQIV+Q GDE  G V +  G  + G+ P  +L+E+
Sbjct:   305 RVHRVTRSF-VGNREIGQITLKKDQIVVQKGDEAGGYVKVYTGR-KVGLFPTDFLEEI 360

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0042802 "identical protein binding" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

RGD|1308964 Stac3 "SH3 and cysteine rich domain 3" [Rattus norvegicus (taxid:10116)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 51/118 (43%), Positives = 79/118 (66%)

Query:    23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
             ++ FV LY FK+   D+LD  PG K+TVID S++ WW+GK   +VG+FP N++I+V+ GE
Sbjct:   246 SHYFVALYRFKALEKDDLDFPPGEKITVIDDSNEEWWRGKIGEKVGFFPPNFIIRVRAGE 305

Query:    83 RPLQVTHNLQIADGESG-LSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV 139
             R  +VT +  + + E G ++L +DQIV+Q GDE  G V +  G  + G+ P  +L+E+
Sbjct:   306 RVHRVTRSF-VGNREIGQITLKKDQIVVQKGDEAGGYVKVYTGR-KVGLFPTDFLEEI 361

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA;ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|J9NYP7 STAC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 49/118 (41%), Positives = 75/118 (63%)

Query:    23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
             ++ FV LY FK+   D+LD  PG K+TVID S++ WW+GK   +VG+FP N++I+V+ GE
Sbjct:   248 SHYFVALYRFKALEKDDLDFPPGEKITVIDDSNEEWWRGKIGEKVGFFPPNFIIRVRAGE 307

Query:    83 RPLQVTHNLQIADGESG-LSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV 139
             R  +VT +  + + E G +     QIV+Q GDE  G V +  G  + G+ P  +L+E+
Sbjct:   308 RVHRVTRSF-VGNREIGQIRKEGSQIVVQKGDEAGGYVKVYTGR-KVGLFPTDFLEEI 363

GO:0046872 "metal ion binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

ZFIN|ZDB-GENE-040801-248 stac3 "SH3 and cysteine rich domain 3" [Danio rerio (taxid:7955)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 44/118 (37%), Positives = 75/118 (63%)

Query:    23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
             ++ ++ LY FK+   D+LD  PG ++TV+D S++ WW+GK   + GY P  Y+I+V+ GE
Sbjct:   219 SHYYMALYRFKAIEKDDLDFHPGDRITVLDDSNEEWWRGKIGEKTGYLPMTYIIRVRAGE 278

Query:    83 RPLQVTHNLQIADGESG-LSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV 139
             R  +VT +  + + E G ++L +DQIV++ G+EV+G + +  G  + G  P   L E+
Sbjct:   279 RVYKVTRSF-VGNREMGQITLKKDQIVVKKGEEVNGYLKVSTGR-KLGFFPADLLHEL 334

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|I3LTV8 STAC "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 218 (81.8 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 41/120 (34%), Positives = 74/120 (61%)

Query:    21 LPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
             L  N +V LY F  +  ++L+++PG  +T+++ S+++WWKGK   R+G+FP+N+V +VQ 
Sbjct:   250 LQMNTYVALYRFIPQENEDLEMRPGDMITLLEDSNEDWWKGKIQDRIGFFPANFVQRVQQ 309

Query:    81 GERPLQVTHNLQIADGESG-LSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV 139
              E+  +      I   E G ++L  +QI +   +E DG + + +G+ R G+ PLK L+ +
Sbjct:   310 NEKIFRCVRTF-IGCKEQGQITLKENQICVTSEEEQDGFIRVLSGKKR-GLVPLKVLENI 367

GO:0034605 "cellular response to heat" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	139
cd11833	53	cd11833, SH3_Stac_1, First C-terminal Src homology	1e-18
smart00326	56	smart00326, SH3, Src homology 3 domains	6e-18
cd11766	53	cd11766, SH3_Nck_2, Second Src Homology 3 domain o	8e-18
cd11986	53	cd11986, SH3_Stac3_1, First C-terminal Src homolog	1e-17
cd11805	53	cd11805, SH3_GRB2_like_C, C-terminal Src homology	1e-16
cd00174	51	cd00174, SH3, Src Homology 3 domain superfamily	3e-16
cd11772	53	cd11772, SH3_OSTF1, Src Homology 3 domain of metaz	2e-15
cd11985	53	cd11985, SH3_Stac2_C, C-terminal Src homology 3 do	2e-14
pfam00018	47	pfam00018, SH3_1, SH3 domain	9e-14
cd12073	55	cd12073, SH3_HS1, Src homology 3 domain of Hematop	1e-13
cd11949	53	cd11949, SH3_GRB2_C, C-terminal Src homology 3 dom	1e-13
cd11845	52	cd11845, SH3_Src_like, Src homology 3 domain of Sr	5e-13
cd11959	53	cd11959, SH3_Cortactin, Src homology 3 domain of C	8e-13
cd11823	53	cd11823, SH3_Nostrin, Src homology 3 domain of Nit	1e-12
cd11874	53	cd11874, SH3_CD2AP-like_2, Second Src Homology 3 d	3e-12
cd11820	54	cd11820, SH3_STAM, Src homology 3 domain of Signal	3e-12
cd11815	52	cd11815, SH3_Eve1_2, Second Src homology 3 domain	4e-12
cd11950	53	cd11950, SH3_GRAP2_C, C-terminal Src homology 3 do	4e-12
cd11877	53	cd11877, SH3_PIX, Src Homology 3 domain of Pak Int	5e-12
cd11964	55	cd11964, SH3_STAM1, Src homology 3 domain of Signa	5e-12
cd11840	53	cd11840, SH3_Intersectin_5, Fifth Src homology 3 d	7e-12
cd12142	55	cd12142, SH3_D21-like, Src Homology 3 domain of SH	2e-11
cd11830	54	cd11830, SH3_VAV_2, C-terminal (or second) Src hom	2e-11
cd11976	54	cd11976, SH3_VAV1_2, C-terminal (or second) Src ho	2e-11
cd11875	55	cd11875, SH3_CD2AP-like_3, Third Src Homology 3 do	4e-11
cd11951	53	cd11951, SH3_GRAP_C, C-terminal Src homology 3 dom	4e-11
cd11963	57	cd11963, SH3_STAM2, Src homology 3 domain of Signa	4e-11
cd12007	58	cd12007, SH3_Yes, Src homology 3 domain of Yes Pro	4e-11
cd11977	58	cd11977, SH3_VAV2_2, C-terminal (or second) Src ho	6e-11
cd11901	55	cd11901, SH3_Nck1_2, Second Src Homology 3 domain	6e-11
cd11842	55	cd11842, SH3_Ysc84p_like, Src homology 3 domain of	6e-11
cd11836	55	cd11836, SH3_Intersectin_1, First Src homology 3 d	7e-11
cd12006	56	cd12006, SH3_Fyn_Yrk, Src homology 3 domain of Fyn	1e-10
cd11902	55	cd11902, SH3_Nck2_2, Second Src Homology 3 domain	2e-10
cd11841	54	cd11841, SH3_SH3YL1_like, Src homology 3 domain of	2e-10
cd11781	53	cd11781, SH3_Sorbs_1, First Src Homology 3 domain	2e-10
pfam07653	53	pfam07653, SH3_2, Variant SH3 domain	2e-10
cd11768	54	cd11768, SH3_Tec_like, Src Homology 3 domain of Te	3e-10
cd12141	57	cd12141, SH3_DNMBP_C2, Second C-terminal Src homol	5e-10
cd11819	54	cd11819, SH3_Cortactin_like, Src homology 3 domain	7e-10
cd11873	53	cd11873, SH3_CD2AP-like_1, First Src Homology 3 do	7e-10
cd11995	54	cd11995, SH3_Intersectin1_5, Fifth Src homology 3	9e-10
cd11876	58	cd11876, SH3_MLK, Src Homology 3 domain of Mixed L	1e-09
cd12058	58	cd12058, SH3_MLK4, Src Homology 3 domain of Mixed	1e-09
cd11849	53	cd11849, SH3_SPIN90, Src homology 3 domain of SH3	1e-09
cd11948	54	cd11948, SH3_GRAP_N, N-terminal Src homology 3 dom	1e-09
cd11803	55	cd11803, SH3_Endophilin_A, Src homology 3 domain o	1e-09
cd12052	53	cd12052, SH3_CIN85_1, First Src Homology 3 domain	1e-09
cd11920	55	cd11920, SH3_Sorbs2_1, First Src Homology 3 domain	2e-09
cd11961	53	cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src	2e-09
cd12059	58	cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixe	2e-09
cd12008	56	cd12008, SH3_Src, Src homology 3 domain of Src Pro	3e-09
cd12061	54	cd12061, SH3_betaPIX, Src Homology 3 domain of bet	4e-09
cd12060	58	cd12060, SH3_alphaPIX, Src Homology 3 domain of al	4e-09
cd11783	55	cd11783, SH3_SH3RF_3, Third Src Homology 3 domain	5e-09
cd11996	54	cd11996, SH3_Intersectin2_5, Fifth Src homology 3	5e-09
cd11826	52	cd11826, SH3_Abi, Src homology 3 domain of Abl Int	6e-09
cd11780	55	cd11780, SH3_Sorbs_3, Third (or C-terminal) Src Ho	8e-09
cd11765	51	cd11765, SH3_Nck_1, First Src Homology 3 domain of	8e-09
cd12056	57	cd12056, SH3_CD2AP_3, Third Src Homology 3 domain	1e-08
cd11978	56	cd11978, SH3_VAV3_2, C-terminal (or second) Src ho	1e-08
cd11827	53	cd11827, SH3_MyoIe_If_like, Src homology 3 domain	1e-08
cd11824	53	cd11824, SH3_PSTPIP1, Src homology 3 domain of Pro	1e-08
cd11843	53	cd11843, SH3_PACSIN, Src homology 3 domain of Prot	1e-08
cd11784	55	cd11784, SH3_SH3RF2_3, Third Src Homology 3 domain	1e-08
cd11812	52	cd11812, SH3_AHI-1, Src Homology 3 domain of Abels	2e-08
cd11828	53	cd11828, SH3_ARHGEF9_like, Src homology 3 domain o	2e-08
cd12054	55	cd12054, SH3_CD2AP_2, Second Src Homology 3 domain	2e-08
cd11818	50	cd11818, SH3_Eve1_5, Fifth Src homology 3 domain o	2e-08
cd11804	52	cd11804, SH3_GRB2_like_N, N-terminal Src homology	3e-08
cd11796	51	cd11796, SH3_DNMBP_N3, Third N-terminal Src homolo	3e-08
cd11879	56	cd11879, SH3_Bem1p_2, Second Src Homology 3 domain	4e-08
cd12057	56	cd12057, SH3_CIN85_3, Third Src Homology 3 domain	4e-08
cd11817	50	cd11817, SH3_Eve1_4, Fourth Src homology 3 domain	5e-08
cd11962	54	cd11962, SH3_Abp1_fungi_C1, First C-terminal Src h	5e-08
cd12076	54	cd12076, SH3_Tks4_2, Second Src homology 3 domain	5e-08
cd11925	57	cd11925, SH3_SH3RF3_3, Third Src Homology 3 domain	7e-08
cd12055	53	cd12055, SH3_CIN85_2, Second Src Homology 3 domain	9e-08
cd12004	56	cd12004, SH3_Lyn, Src homology 3 domain of Lyn Pro	9e-08
cd12005	54	cd12005, SH3_Lck, Src homology 3 domain of Lck Pro	9e-08
cd11906	55	cd11906, SH3_BTK, Src Homology 3 domain of Bruton'	1e-07
cd11782	53	cd11782, SH3_Sorbs_2, Second Src Homology 3 domain	1e-07
cd11771	60	cd11771, SH3_Pex13p_fungal, Src Homology 3 domain	1e-07
cd11769	57	cd11769, SH3_CSK, Src Homology 3 domain of C-termi	1e-07
cd11847	58	cd11847, SH3_Brk, Src homology 3 domain of Brk (Br	1e-07
cd11905	56	cd11905, SH3_Tec, Src Homology 3 domain of Tec (Ty	1e-07
cd11971	59	cd11971, SH3_Abi1, Src homology 3 domain of Abl In	2e-07
cd12024	53	cd12024, SH3_NoxO1_2, Second or C-terminal Src hom	2e-07
cd11926	55	cd11926, SH3_SH3RF1_3, Third Src Homology 3 domain	2e-07
cd12046	53	cd12046, SH3_p67phox_C, C-terminal (or second) Src	2e-07
cd11856	53	cd11856, SH3_p47phox_like, Src homology 3 domains	2e-07
cd11919	55	cd11919, SH3_Sorbs1_1, First Src Homology 3 domain	2e-07
cd11999	56	cd11999, SH3_PACSIN_like, Src homology 3 domain of	3e-07
cd11960	54	cd11960, SH3_Abp1_eu, Src homology 3 domain of eum	3e-07
cd11946	56	cd11946, SH3_GRB2_N, N-terminal Src homology 3 dom	3e-07
cd11764	54	cd11764, SH3_Eps8, Src Homology 3 domain of Epider	4e-07
cd11808	53	cd11808, SH3_Alpha_Spectrin, Src homology 3 domain	5e-07
cd11825	54	cd11825, SH3_PLCgamma, Src homology 3 domain of Ph	6e-07
cd11801	55	cd11801, SH3_JIP1_like, Src homology 3 domain of J	8e-07
cd11982	52	cd11982, SH3_Shank1, Src homology 3 domain of SH3	8e-07
cd11839	58	cd11839, SH3_Intersectin_4, Fourth Src homology 3	9e-07
cd12009	54	cd12009, SH3_Blk, Src homology 3 domain of Blk Pro	1e-06
cd11952	56	cd11952, SH3_iASPP, Src Homology 3 (SH3) domain of	1e-06
cd11997	56	cd11997, SH3_PACSIN3, Src homology 3 domain of Pro	1e-06
cd11923	57	cd11923, SH3_Sorbs2_2, Second Src Homology 3 domai	1e-06
cd11969	55	cd11969, SH3_PLCgamma2, Src homology 3 domain of P	1e-06
cd11761	57	cd11761, SH3_FCHSD_1, First Src Homology 3 domain	1e-06
cd11786	53	cd11786, SH3_SH3RF_1, First Src Homology 3 domain	2e-06
cd11991	52	cd11991, SH3_Intersectin1_3, Third Src homology 3	2e-06
cd11835	54	cd11835, SH3_ARHGAP32_33, Src homology 3 domain of	2e-06
cd11970	60	cd11970, SH3_PLCgamma1, Src homology 3 domain of P	2e-06
cd11758	55	cd11758, SH3_CRK_N, N-terminal Src Homology 3 doma	3e-06
cd11987	55	cd11987, SH3_Intersectin1_1, First Src homology 3	3e-06
cd11806	53	cd11806, SH3_PRMT2, Src homology 3 domain of Prote	3e-06
cd11832	50	cd11832, SH3_Shank, Src homology 3 domain of SH3 a	3e-06
cd11924	56	cd11924, SH3_Vinexin_2, Second Src Homology 3 doma	3e-06
cd11972	61	cd11972, SH3_Abi2, Src homology 3 domain of Abl In	3e-06
cd11921	55	cd11921, SH3_Vinexin_1, First Src Homology 3 domai	5e-06
cd12016	54	cd12016, SH3_Tks_2, Second Src homology 3 domain o	6e-06
cd11922	58	cd11922, SH3_Sorbs1_2, Second Src Homology 3 domai	6e-06
cd11998	56	cd11998, SH3_PACSIN1-2, Src homology 3 domain of P	6e-06
cd11837	53	cd11837, SH3_Intersectin_2, Second Src homology 3	8e-06
cd12011	55	cd12011, SH3_SLAP2, Src homology 3 domain of Src-L	8e-06
cd11821	53	cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP	8e-06
cd11787	53	cd11787, SH3_SH3RF_2, Second Src Homology 3 domain	8e-06
cd11763	55	cd11763, SH3_SNX9_like, Src Homology 3 domain of S	8e-06
cd11775	57	cd11775, SH3_Sla1p_3, Third Src Homology 3 domain	9e-06
cd11870	53	cd11870, SH3_p67phox-like_C, C-terminal Src Homolo	1e-05
cd11797	50	cd11797, SH3_DNMBP_N4, Fourth N-terminal Src homol	1e-05
cd11848	55	cd11848, SH3_SLAP-like, Src homology 3 domain of S	1e-05
cd11800	57	cd11800, SH3_DNMBP_C2_like, Second C-terminal Src	1e-05
cd11918	58	cd11918, SH3_Vinexin_3, Third (or C-terminal) Src	1e-05
cd11829	52	cd11829, SH3_GAS7, Src homology 3 domain of Growth	1e-05
cd11886	55	cd11886, SH3_BOI, Src Homology 3 domain of fungal	2e-05
cd11917	61	cd11917, SH3_Sorbs2_3, Third (or C-terminal) Src H	2e-05
cd12017	53	cd12017, SH3_Tks_3, Third Src homology 3 domain of	2e-05
cd11809	53	cd11809, SH3_srGAP, Src homology 3 domain of Slit-	2e-05
cd11838	52	cd11838, SH3_Intersectin_3, Third Src homology 3 d	2e-05
cd11988	57	cd11988, SH3_Intersectin2_1, First Src homology 3	3e-05
cd11992	52	cd11992, SH3_Intersectin2_3, Third Src homology 3	3e-05
cd11855	55	cd11855, SH3_Sho1p, Src homology 3 domain of High	3e-05
cd11778	51	cd11778, SH3_Bzz1_2, Second Src Homology 3 domain	4e-05
cd11887	60	cd11887, SH3_Bbc1, Src Homology 3 domain of Bbc1 a	4e-05
cd11954	57	cd11954, SH3_ASPP1, Src Homology 3 domain of Apopt	4e-05
cd11762	57	cd11762, SH3_FCHSD_2, Second Src Homology 3 domain	5e-05
cd11767	56	cd11767, SH3_Nck_3, Third Src Homology 3 domain of	5e-05
cd12074	53	cd12074, SH3_Tks5_1, First Src homology 3 domain o	7e-05
cd11793	55	cd11793, SH3_ephexin1_like, Src homology 3 domain	9e-05
cd11947	52	cd11947, SH3_GRAP2_N, N-terminal Src homology 3 do	1e-04
cd11974	54	cd11974, SH3_ASEF2, Src homology 3 domain of APC-S	1e-04
cd11927	54	cd11927, SH3_SH3RF1_1, First Src Homology 3 domain	1e-04
cd11850	56	cd11850, SH3_Abl, Src homology 3 domain of the Pro	1e-04
cd11903	59	cd11903, SH3_Nck2_3, Third Src Homology 3 domain o	2e-04
cd11858	55	cd11858, SH3_Myosin-I_fungi, Src homology 3 domain	2e-04
cd11975	62	cd11975, SH3_ARHGEF9, Src homology 3 domain of the	2e-04
cd11973	73	cd11973, SH3_ASEF, Src homology 3 domain of APC-St	2e-04
cd11993	65	cd11993, SH3_Intersectin1_4, Fourth Src homology 3	2e-04
cd11770	54	cd11770, SH3_Nephrocystin, Src Homology 3 domain o	2e-04
cd11882	54	cd11882, SH3_GRAF-like, Src Homology 3 domain of G	2e-04
cd11908	56	cd11908, SH3_ITK, Src Homology 3 domain of Interle	2e-04
cd11816	51	cd11816, SH3_Eve1_3, Third Src homology 3 domain o	2e-04
cd11955	53	cd11955, SH3_srGAP1-3, Src homology 3 domain of Sl	2e-04
cd11933	58	cd11933, SH3_Nebulin_C, C-terminal Src Homology 3	2e-04
cd11907	55	cd11907, SH3_TXK, Src Homology 3 domain of TXK, al	3e-04
cd11795	54	cd11795, SH3_DNMBP_N2, Second N-terminal Src homol	3e-04
cd12053	56	cd12053, SH3_CD2AP_1, First Src Homology 3 domain	3e-04
cd11774	52	cd11774, SH3_Sla1p_2, Second Src Homology 3 domain	3e-04
cd11932	57	cd11932, SH3_SH3RF2_2, Second Src Homology 3 domai	4e-04
cd11807	57	cd11807, SH3_ASPP, Src homology 3 domain of Apopto	5e-04
cd11916	59	cd11916, SH3_Sorbs1_3, Third (or C-terminal) Src H	5e-04
cd11956	55	cd11956, SH3_srGAP4, Src homology 3 domain of Slit	5e-04
cd11813	53	cd11813, SH3_SGSM3, Src Homology 3 domain of Small	5e-04
cd11904	57	cd11904, SH3_Nck1_3, Third Src Homology 3 domain o	5e-04
cd11895	58	cd11895, SH3_FCHSD1_2, Second Src Homology 3 domai	6e-04
cd12010	55	cd12010, SH3_SLAP, Src homology 3 domain of Src-Li	6e-04
cd11989	52	cd11989, SH3_Intersectin1_2, Second Src homology 3	6e-04
cd11984	52	cd11984, SH3_Shank3, Src homology 3 domain of SH3	7e-04
cd11846	55	cd11846, SH3_Srms, Src homology 3 domain of Srms P	7e-04
cd11900	59	cd11900, SH3_Nck1_1, First Src Homology 3 domain o	7e-04
cd12077	54	cd12077, SH3_Tks5_2, Second Src homology 3 domain	8e-04
cd12047	53	cd12047, SH3_Noxa1_C, C-terminal Src Homology 3 do	0.001
cd11953	57	cd11953, SH3_ASPP2, Src Homology 3 (SH3) domain of	0.001
cd11791	59	cd11791, SH3_UBASH3, Src homology 3 domain of Ubiq	0.001
cd11966	56	cd11966, SH3_ASAP2, Src homology 3 domain of ArfGA	0.001
cd11983	52	cd11983, SH3_Shank2, Src homology 3 domain of SH3	0.001
cd11899	58	cd11899, SH3_Nck2_1, First Src Homology 3 domain o	0.001
cd11883	55	cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25	0.001
cd11773	57	cd11773, SH3_Sla1p_1, First Src Homology 3 domain	0.002
cd12022	53	cd12022, SH3_p47phox_2, Second or C-terminal Src h	0.002
cd11794	51	cd11794, SH3_DNMBP_N1, First N-terminal Src homolo	0.002
cd11894	56	cd11894, SH3_FCHSD2_2, Second Src Homology 3 domai	0.003
cd11864	58	cd11864, SH3_PEX13_eumet, Src Homology 3 domain of	0.003
cd12051	56	cd12051, SH3_DOCK1_5_A, Src Homology 3 domain of C	0.003
cd11965	57	cd11965, SH3_ASAP1, Src homology 3 domain of ArfGA	0.004
cd11930	55	cd11930, SH3_SH3RF1_2, Second Src Homology 3 domai	0.004
cd11869	54	cd11869, SH3_p40phox, Src Homology 3 domain of the	0.004
cd11942	55	cd11942, SH3_JIP2, Src homology 3 domain of JNK-in	0.004
cd11941	57	cd11941, SH3_ARHGEF37_C2, Second C-terminal Src ho	0.004

>gnl|CDD|212767 cd11833, SH3_Stac_1, First C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing (Stac) proteins

 Score = 73.3 bits (180), Expect = 1e-18
 Identities = 24/52 (46%), Positives = 41/52 (78%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIK 77
          +V LY FK +  ++L+++PG K+T++D S+++WWKGK   RVG+FP+N+V +
Sbjct: 2  YVALYKFKPQENEDLEMRPGDKITLLDDSNEDWWKGKIEDRVGFFPANFVQR 53

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac1 and Stac3 contain two SH3 domains while Stac2 contains a single SH3 domain at the C-terminus. This model represents the first C-terminal SH3 domain of Stac1 and Stac3, and the single C-terminal SH3 domain of Stac2. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|214620 smart00326, SH3, Src homology 3 domains

 Score = 71.8 bits (177), Expect = 6e-18
 Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSNYV 75
             LY++ ++  DEL  K G  +TV++ SD  WWKG+   G+ G FPSNYV
Sbjct: 5  VRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYV 55

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations. Length = 56

>gnl|CDD|212700 cd11766, SH3_Nck_2, Second Src Homology 3 domain of Nck adaptor proteins

 Score = 71.5 bits (176), Expect = 8e-18
 Identities = 24/50 (48%), Positives = 37/50 (74%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
           VV +N++++  DEL L+ G +V V++ S   WW+G+C G+VG+FPSNYV
Sbjct: 2  AVVKFNYEAQREDELSLRKGDRVLVLEKSSDGWWRGECNGQVGWFPSNYV 51

Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212919 cd11986, SH3_Stac3_1, First C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing protein 3 (Stac3)

 Score = 71.1 bits (174), Expect = 1e-17
 Identities = 26/52 (50%), Positives = 37/52 (71%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIK 77
          FV LY FK+   D+LD  PG ++TVID S++ WW+GK   + GYFP N++I+
Sbjct: 2  FVALYRFKALEKDDLDFHPGERITVIDDSNEEWWRGKIGEKTGYFPMNFIIR 53

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac1 and Stac3 contain two SH3 domains while Stac2 contains a single SH3 domain at the C-terminus. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212739 cd11805, SH3_GRB2_like_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 68.4 bits (168), Expect = 1e-16
 Identities = 24/49 (48%), Positives = 34/49 (69%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIK 77
          LY+F  +   EL+ + G  +TV+D+SD +WWKG+  GRVG FP+NYV  
Sbjct: 5  LYDFNPQEPGELEFRRGDIITVLDSSDPDWWKGELRGRVGIFPANYVQP 53

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The C-terminal SH3 domains (SH3c) of GRB2 and GRAP2 have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212690 cd00174, SH3, Src Homology 3 domain superfamily

 Score = 67.1 bits (165), Expect = 3e-16
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSNY 74
             LY+++++  DEL  K G  +TV++  D  WW+G+   GR G FP+NY
Sbjct: 2  ARALYDYEAQDDDELSFKKGDIITVLEKDDDGWWEGELNGGREGLFPANY 51

Src Homology 3 (SH3) domains are protein interaction domains that bind proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. Thus, they are referred to as proline-recognition domains (PRDs). SH3 domains are less selective and show more diverse specificity compared to other PRDs. They have been shown to bind peptide sequences that lack the PxxP motif; examples include the PxxDY motif of Eps8 and the RKxxYxxY sequence in SKAP55. SH3 domain containing proteins play versatile and diverse roles in the cell, including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies, among others. Many members of this superfamily are adaptor proteins that associate with a number of protein partners, facilitating complex formation and signal transduction. Length = 51

>gnl|CDD|212706 cd11772, SH3_OSTF1, Src Homology 3 domain of metazoan osteoclast stimulating factor 1

 Score = 65.0 bits (159), Expect = 2e-15
 Identities = 22/48 (45%), Positives = 31/48 (64%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVI 76
          LY+++++H DEL  + G  + + D SD NWWK  C G+ G  PSNYV 
Sbjct: 5  LYDYEAQHPDELSFEEGDLLYISDKSDPNWWKATCGGKTGLIPSNYVE 52

OSTF1, also named OSF or SH3P2, is a signaling protein containing SH3 and ankyrin-repeat domains. It acts through a Src-related pathway to enhance the formation of osteoclasts and bone resorption. It also acts as a negative regulator of cell motility. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212918 cd11985, SH3_Stac2_C, C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing protein 2 (Stac2)

 Score = 63.0 bits (153), Expect = 2e-14
 Identities = 24/50 (48%), Positives = 37/50 (74%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          +V LY F  +  ++L L+PG +V V+D S+++WWKGK   RVG+FP+N+V
Sbjct: 2  YVALYKFLPQENNDLPLQPGDRVMVVDDSNEDWWKGKSGDRVGFFPANFV 51

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac2 contains a single SH3 domain at the C-terminus unlike Stac1 and Stac3, which contain two C-terminal SH3 domains. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|215659 pfam00018, SH3_1, SH3 domain

 Score = 61.0 bits (149), Expect = 9e-14
 Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPS 72
          V LY++ +R  DEL  K G  + V++ SD  WWKG+   G+ G  PS
Sbjct: 1  VALYDYTAREPDELSFKKGDIIIVLEKSDDGWWKGRLKGGKEGLIPS 47

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 47

>gnl|CDD|213006 cd12073, SH3_HS1, Src homology 3 domain of Hematopoietic lineage cell-specific protein 1

 Score = 61.0 bits (148), Expect = 1e-13
 Identities = 21/49 (42%), Positives = 29/49 (59%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          V LY+++    DE+   P   +T I+  D+ WWKG C G  G FP+NYV
Sbjct: 4  VALYDYQGEGDDEISFDPQETITDIEMVDEGWWKGTCHGHRGLFPANYV 52

HS1, also called HCLS1 (hematopoietic cell-specific Lyn substrate 1), is a cortactin homolog expressed specifically in hematopoietic cells. It is an actin regulatory protein that binds the Arp2/3 complex and stabilizes branched actin filaments. It is required for cell spreading and signaling in lymphocytes. It regulates cytoskeletal remodeling that controls lymphocyte trafficking, and it also affects tissue invasion and infiltration of leukemic B cells. Like cortactin, HS1 contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region binds the Arp2/3 complex and F-actin, while the C-terminal region acts as an adaptor or scaffold that can connect varied proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212882 cd11949, SH3_GRB2_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 60.6 bits (147), Expect = 1e-13
 Identities = 22/47 (46%), Positives = 29/47 (61%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          L++F  +   EL  + G  + V+D SD NWWKG C G+ G FP NYV
Sbjct: 5  LFDFDPQEDGELGFRRGDFIEVMDNSDPNWWKGACHGQTGMFPRNYV 51

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRB2 binds to Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, as well as to the proline-rich C-terminus of FGRF2. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212779 cd11845, SH3_Src_like, Src homology 3 domain of Src kinase-like Protein Tyrosine Kinases

 Score = 59.1 bits (144), Expect = 5e-13
 Identities = 20/52 (38%), Positives = 35/52 (67%), Gaps = 2/52 (3%)

Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNY 74
          ++V LY++++R  D+L  K G ++ ++D SD +WW  + +  G+ GY PSNY
Sbjct: 1  IYVALYDYEARTDDDLSFKKGDRLQILDDSDGDWWLARHLSTGKEGYIPSNY 52

Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, Yes, and Brk. Src (or c-Src) proteins are cytoplasmic (or non-receptor) PTKs which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). However, Brk lacks the N-terminal myristoylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells, and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, Lyn, and Brk show a limited expression pattern. This subfamily also includes Drosophila Src42A, Src oncogene at 42A (also known as Dsrc41) which accumulates at sites of cell-cell or cell-matrix adhesion, and participates in Drosphila development and wound healing. It has been shown to promote tube elongation in the tracheal system, is essential for proper cell-cell matching during dorsal closure, and regulates cell-cell contacts in developing Drosophila eyes. The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212892 cd11959, SH3_Cortactin, Src homology 3 domain of Cortactin

 Score = 58.6 bits (142), Expect = 8e-13
 Identities = 20/49 (40%), Positives = 31/49 (63%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          V LY++++   DE+   P   +T I+  D+ WW+G C G+ G FP+NYV
Sbjct: 3  VALYDYQAADDDEISFDPDDIITNIEMIDEGWWRGVCRGKYGLFPANYV 51

Cortactin was originally identified as a substrate of Src kinase. It is an actin regulatory protein that binds to the Arp2/3 complex and stabilizes branched actin filaments. It is involved in cellular processes that affect cell motility, adhesion, migration, endocytosis, and invasion. It is expressed ubiquitously except in hematopoietic cells, where the homolog hematopoietic lineage cell-specific 1 (HS1) is expressed instead. Cortactin contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region interacts with the Arp2/3 complex and F-actin, and is crucial in regulating branched actin assembly. Cortactin also serves as a scaffold and provides a bridge to the actin cytoskeleton for membrane trafficking and signaling proteins that bind to its SH3 domain. Binding partners for the SH3 domain of cortactin include dynamin2, N-WASp, MIM, FGD1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212757 cd11823, SH3_Nostrin, Src homology 3 domain of Nitric Oxide Synthase TRaffic INducer

 Score = 58.1 bits (141), Expect = 1e-12
 Identities = 19/47 (40%), Positives = 28/47 (59%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          LY++ +   DEL L+PG  + V +  D  WW G+  G+ G FP+ YV
Sbjct: 5  LYSYTANREDELSLQPGDIIEVHEKQDDGWWLGELNGKKGIFPATYV 51

Nostrin is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). It facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of Nostrin may be correlated to preeclampsia. Nostrin contains an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212807 cd11874, SH3_CD2AP-like_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein and similar proteins

 Score = 57.3 bits (139), Expect = 3e-12
 Identities = 21/48 (43%), Positives = 34/48 (70%)

Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          VL+++  ++ DEL+LK G  + V+   ++ WW+GK  G+VG FPSN+V
Sbjct: 4  VLFSYTPQNEDELELKVGDTIEVLGEVEEGWWEGKLNGKVGVFPSNFV 51

This subfamily is composed of the second SH3 domain (SH3B) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3B of both proteins have been shown to bind to Cbl. In the case of CD2AP, its SH3B binds to Cbl at a site distinct from the c-Cbl/SH3A binding site. The CIN85 SH3B also binds ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212754 cd11820, SH3_STAM, Src homology 3 domain of Signal Transducing Adaptor Molecules

 Score = 57.1 bits (138), Expect = 3e-12
 Identities = 22/47 (46%), Positives = 30/47 (63%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          LY+F++   +EL  K G  +TV+D SD NWWKG      G FP+N+V
Sbjct: 6  LYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGSNHRGEGLFPANFV 52

STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. There are two vertebrate STAMs, STAM1 and STAM2, which may be functionally redundant; vertebrate STAMs contain ITAM motifs. They are part of the endosomal sorting complex required for transport (ESCRT-0). STAM2 deficiency in mice did not cause any obvious abnormality, while STAM1 deficiency resulted in growth retardation. Loss of both STAM1 and STAM2 in mice proved lethal, indicating that STAMs are important for embryonic development. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212749 cd11815, SH3_Eve1_2, Second Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 56.8 bits (137), Expect = 4e-12
 Identities = 20/49 (40%), Positives = 32/49 (65%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          VVL++F + H+D+L L  G  V +++  D  W++GKC    G FP+N+V
Sbjct: 3  VVLHDFPAEHSDDLSLNSGEIVYLLEKIDTEWYRGKCKNTTGIFPANHV 51

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212883 cd11950, SH3_GRAP2_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein 2

 Score = 56.8 bits (137), Expect = 4e-12
 Identities = 21/47 (44%), Positives = 33/47 (70%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          LY+F++   DEL    G  + V+D+S+ +WWKG+  G++G FP+NYV
Sbjct: 5  LYDFEALEDDELGFNSGDVIEVLDSSNPSWWKGRLHGKLGLFPANYV 51

GRAP2 is also called GADS (GRB2-related adapter downstream of Shc), GrpL, GRB2L, Mona, or GRID (Grb2-related protein with insert domain). It is expressed specifically in the hematopoietic system. It plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. It also has roles in antigen-receptor and tyrosine kinase mediated signaling. GRAP2 is unique from other GRB2-like adaptor proteins in that it can be regulated by caspase cleavage. It contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRAP2 binds to different motifs found in substrate peptides including the typical PxxP motif in hematopoietic progenitor kinase 1 (HPK1), the RxxK motif in SLP-76 and HPK1, and the RxxxxK motif in phosphatase-like protein HD-PTP. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212810 cd11877, SH3_PIX, Src Homology 3 domain of Pak Interactive eXchange factors

 Score = 56.6 bits (137), Expect = 5e-12
 Identities = 19/48 (39%), Positives = 27/48 (56%)

Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
            +NF+  + DEL    G  +TV    +  WW+G   G+ G+FPSNYV
Sbjct: 4  AKFNFEGTNEDELSFDKGDIITVTQVVEGGWWEGTLNGKTGWFPSNYV 51

PIX proteins are Rho guanine nucleotide exchange factors (GEFs), which activate small GTPases by exchanging bound GDP for free GTP. They act as GEFs for both Cdc42 and Rac 1, and have been implicated in cell motility, adhesion, neurite outgrowth, and cell polarity. Vertebrates contain two proteins from the PIX subfamily, alpha-PIX and beta-PIX. Alpha-PIX, also called ARHGEF6, is localized in dendritic spines where it regulates spine morphogenesis. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. Beta-PIX play roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212897 cd11964, SH3_STAM1, Src homology 3 domain of Signal Transducing Adaptor Molecule 1

 Score = 56.5 bits (136), Expect = 5e-12
 Identities = 21/47 (44%), Positives = 31/47 (65%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          +Y+F++   +EL  K G  +T++D SD NWWKG+     G FPSN+V
Sbjct: 6  IYDFEAAEDNELTFKAGDIITILDDSDPNWWKGETPQGTGLFPSNFV 52

STAM1 is part of the endosomal sorting complex required for transport (ESCRT-0) and is involved in sorting ubiquitinated cargo proteins from the endosome. It may also be involved in the regulation of IL2 and GM-CSF mediated signaling, and has been implicated in neural cell survival. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212774 cd11840, SH3_Intersectin_5, Fifth Src homology 3 domain (or SH3E) of Intersectin

 Score = 56.3 bits (136), Expect = 7e-12
 Identities = 18/49 (36%), Positives = 31/49 (63%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          + L+ + +++ DEL  + G  + V+   D +WW+G+  G+ G FPSNYV
Sbjct: 3  IALFPYTAQNEDELSFQKGDIINVLSKDDPDWWRGELNGQTGLFPSNYV 51

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|213018 cd12142, SH3_D21-like, Src Homology 3 domain of SH3 domain-containing protein 21 (SH3D21) and similar proteins

 Score = 55.5 bits (134), Expect = 2e-11
 Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 2/51 (3%)

Query: 28 VLYNFKSRHADELDLKPGYKVTVI--DTSDQNWWKGKCMGRVGYFPSNYVI 76
          VL+++     DEL LK G  + VI  +T D+ WW+G+  GR G+FP N+V+
Sbjct: 4  VLFDYNPVAPDELALKKGDVIEVISKETEDEGWWEGELNGRRGFFPDNFVM 54

N-terminal SH3 domain of the uncharacterized protein SH3 domain-containing protein 21, and similar uncharacterized domains, it belongs to the CD2AP-like_3 subfamily of proteins. The CD2AP-like_3 subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212764 cd11830, SH3_VAV_2, C-terminal (or second) Src homology 3 domain of VAV proteins

 Score = 54.9 bits (132), Expect = 2e-11
 Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 30 YNFKSRHADELDLKPGYKVTVID-TSDQNWWKGKCMGRVGYFPSNYV 75
          Y+F +R   EL LK G  V + +    Q WW+G+  GR+G+FPS YV
Sbjct: 6  YDFCARDMRELSLKEGDVVKIYNKKGQQGWWRGEINGRIGWFPSTYV 52

VAV proteins function both as cytoplasmic guanine nucleotide exchange factors (GEFs) for Rho GTPases and scaffold proteins and they play important roles in cell signaling by coupling cell surface receptors to various effector functions. They play key roles in processes that require cytoskeletal reorganization including immune synapse formation, phagocytosis, cell spreading, and platelet aggregation, among others. Vertebrates have three VAV proteins (VAV1, VAV2, and VAV3). VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212909 cd11976, SH3_VAV1_2, C-terminal (or second) Src homology 3 domain of VAV1 protein

 Score = 54.9 bits (132), Expect = 2e-11
 Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 30 YNFKSRHADELDLKPGYKVTVIDTSDQN-WWKGKCMGRVGYFPSNYV 75
          Y+F +R   EL LK G  + +++   Q  WW+G+  GRVG+FP+NYV
Sbjct: 6  YDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRVGWFPANYV 52

VAV1 is expressed predominantly in the hematopoietic system and it plays an important role in the development and activation of B and T cells. It is activated by tyrosine phosphorylation to function as a guanine nucleotide exchange factor (GEF) for Rho GTPases following cell surface receptor activation, triggering various effects such as cytoskeletal reorganization, transcription regulation, cell cycle progression, and calcium mobilization. It also serves as a scaffold protein and has been shown to interact with Ku70, Socs1, Janus kinase 2, SIAH2, S100B, Abl gene, ZAP-70, SLP76, and Syk, among others. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The C-terminal SH3 domain of Vav1 interacts with a wide variety of proteins including cytoskeletal regulators (zyxin), RNA-binding proteins (Sam68), transcriptional regulators, viral proteins, and dynamin 2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212808 cd11875, SH3_CD2AP-like_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein and similar proteins

 Score = 54.3 bits (131), Expect = 4e-11
 Identities = 21/50 (42%), Positives = 34/50 (68%), Gaps = 2/50 (4%)

Query: 28 VLYNFKSRHADELDLKPGYKVTVI--DTSDQNWWKGKCMGRVGYFPSNYV 75
          VL+++++ + DEL L+ G  VT++  D  D+ WWKG+  G+ G FP N+V
Sbjct: 4  VLFDYEAENEDELTLREGDIVTILSKDCEDKGWWKGELNGKRGVFPDNFV 53

This subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212884 cd11951, SH3_GRAP_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein

 Score = 54.4 bits (131), Expect = 4e-11
 Identities = 20/46 (43%), Positives = 29/46 (63%)

Query: 30 YNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          Y+F +    +L  + G  + V+D  D NWW+G+  GRVG+FP NYV
Sbjct: 6  YDFSAEDPSQLSFRRGDIIEVLDCPDPNWWRGRISGRVGFFPRNYV 51

GRAP is a GRB-2 like adaptor protein that is highly expressed in lymphoid tissues. It acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. It has been identified as a regulator of TGFbeta signaling in diabetic kidney tubules and may have a role in the pathogenesis of the disease. GRAP contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domains (SH3c) of the related proteins, GRB2 and GRAP2, have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212896 cd11963, SH3_STAM2, Src homology 3 domain of Signal Transducing Adaptor Molecule 2

 Score = 54.3 bits (130), Expect = 4e-11
 Identities = 23/47 (48%), Positives = 31/47 (65%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          LY+F++   +EL  K G  + V+D SD NWWKG+    VG FPSN+V
Sbjct: 7  LYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGVGLFPSNFV 53

STAM2, also called EAST (Epidermal growth factor receptor-associated protein with SH3 and TAM domain) or Hbp (Hrs binding protein), is part of the endosomal sorting complex required for transport (ESCRT-0). It plays a role in sorting mono-ubiquinated endosomal cargo for trafficking to the lysosome for degradation. It is also involved in the regulation of exocytosis. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212940 cd12007, SH3_Yes, Src homology 3 domain of Yes Protein Tyrosine Kinase

 Score = 54.3 bits (130), Expect = 4e-11
 Identities = 19/54 (35%), Positives = 36/54 (66%), Gaps = 2/54 (3%)

Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVI 76
          +FV LY++++R  ++L  K G +  +I+ ++ +WW+ + +  G+ GY PSNYV 
Sbjct: 2  IFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKNGYIPSNYVA 55

Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212910 cd11977, SH3_VAV2_2, C-terminal (or second) Src homology 3 domain of VAV2 protein

 Score = 53.9 bits (129), Expect = 6e-11
 Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDT--SDQNWWKGKCMGRVGYFPSNYV 75
          V  YNF +R   EL L+ G  V +      DQ WWKG+  GR+G+FPS YV
Sbjct: 4  VARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYV 54

VAV2 is widely expressed and functions as a guanine nucleotide exchange factor (GEF) for RhoA, RhoB and RhoG and also activates Rac1 and Cdc42. It is implicated in many cellular and physiological functions including blood pressure control, eye development, neurite outgrowth and branching, EGFR endocytosis and degradation, and cell cluster morphology, among others. It has been reported to associate with Nek3. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212834 cd11901, SH3_Nck1_2, Second Src Homology 3 domain of Nck1 adaptor protein

 Score = 53.9 bits (129), Expect = 6e-11
 Identities = 22/48 (45%), Positives = 30/48 (62%)

Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          V +N+ +   DEL L  G KV V++     WW+G   G+VG+FPSNYV
Sbjct: 6  VKFNYTAEREDELSLVKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYV 53

Nck1 (also called Nckalpha) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds and activates RasGAP, resulting in the downregulation of Ras. It is also involved in the signaling of endothilin-mediated inhibition of cell migration. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212776 cd11842, SH3_Ysc84p_like, Src homology 3 domain of Ysc84p and similar fungal proteins

 Score = 54.0 bits (130), Expect = 6e-11
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQ--NWWKGKCMGRVGYFPSNYV 75
          V LY+F      +L  + G  +T++  SD   +WW G+  GR G FP+NYV
Sbjct: 3  VALYDFAGEQPGDLAFQKGDIITILKKSDSQNDWWTGRIGGREGIFPANYV 53

This family is composed of the Saccharomyces cerevisiae proteins, Ysc84p (also called LAS17-binding protein 4, Lsb4p) and Lsb3p, and similar fungal proteins. They contain an N-terminal SYLF domain (also called DUF500) and a C-terminal SH3 domain. Ysc84p localizes to actin patches and plays an important in actin polymerization during endocytosis. The N-terminal domain of both Ysc84p and Lsb3p can bind and bundle actin filaments. A study of the yeast SH3 domain interactome predicts that the SH3 domains of Lsb3p and Lsb4p may function as molecular hubs for the assembly of endocytic complexes. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212770 cd11836, SH3_Intersectin_1, First Src homology 3 domain (or SH3A) of Intersectin

 Score = 53.9 bits (130), Expect = 7e-11
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 4/53 (7%)

Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQN---WWKGKCMGRVGYFPSNYVIK 77
           LY F++R+ DE+  +PG  + V D S      W  G+  G+ G+FP+NYV K
Sbjct: 4  ALYAFEARNPDEISFQPGDIIQV-DESQVAEPGWLAGELKGKTGWFPANYVEK 55

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The first SH3 domain (or SH3A) of ITSN1 has been shown to bind many proteins including Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212939 cd12006, SH3_Fyn_Yrk, Src homology 3 domain of Fyn and Yrk Protein Tyrosine Kinases

 Score = 53.5 bits (128), Expect = 1e-10
 Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 2/53 (3%)

Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
          LFV LY++++R  D+L    G K  ++++S+ +WW+ + +  G  GY PSNYV
Sbjct: 2  LFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 54

Fyn and Yrk (Yes-related kinase) are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212835 cd11902, SH3_Nck2_2, Second Src Homology 3 domain of Nck2 adaptor protein

 Score = 52.7 bits (126), Expect = 2e-10
 Identities = 20/51 (39%), Positives = 32/51 (62%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIK 77
           V + + +   DEL L  G +VTV++     WW+G   G++G+FPSNYV++
Sbjct: 4  FVKFAYVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYVVE 54

Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds neuronal signaling proteins such as ephrinB and Disabled-1 (Dab-1) exclusively. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212775 cd11841, SH3_SH3YL1_like, Src homology 3 domain of SH3 domain containing Ysc84-like 1 (SH3YL1) protein

 Score = 52.4 bits (126), Expect = 2e-10
 Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 2/49 (4%)

Query: 29 LYNFKSRHADELDLKPGYKVTVID-TSDQN-WWKGKCMGRVGYFPSNYV 75
          LY+F+ +   +L  + G ++TV+  T  Q  WW+G+  GRVG FP+NYV
Sbjct: 5  LYSFEGQQPCDLSFQAGDRITVLTRTDSQFDWWEGRLRGRVGIFPANYV 53

SH3YL1 localizes to the plasma membrane and is required for dorsal ruffle formation. It binds phosphoinositides (PIs) with high affinity through its N-terminal SYLF domain (also called DUF500). In addition, SH3YL1 contains a C-terminal SH3 domain which has been reported to bind to N-WASP, dynamin 2, and SHIP2 (a PI 5-phosphatase). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212715 cd11781, SH3_Sorbs_1, First Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 52.3 bits (126), Expect = 2e-10
 Identities = 22/48 (45%), Positives = 32/48 (66%)

Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
           LY FK++ A EL LK G  + +    D+NW++G+  GRVG FP++YV
Sbjct: 4  ALYPFKAQSAKELSLKKGDIIYIRRQIDKNWYEGEHNGRVGIFPASYV 51

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the first SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|219499 pfam07653, SH3_2, Variant SH3 domain

 Score = 52.1 bits (126), Expect = 2e-10
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
             V++++ +   +EL LK G  V V+D  D  WW+G+  GR G  PS+YV
Sbjct: 1  YGRVIFDYVATDPNELSLKKGDVVKVLDKDDNGWWEGERGGRRGLVPSSYV 51

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 53

>gnl|CDD|212702 cd11768, SH3_Tec_like, Src Homology 3 domain of Tec-like Protein Tyrosine Kinases

 Score = 51.9 bits (125), Expect = 3e-10
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYVIK 77
          V LY+F+     +L L+ G +  V+D S+++WW+ +   G  GY PSNYV +
Sbjct: 3  VALYDFQPIEPGDLPLEKGEEYVVLDDSNEHWWRARDKNGNEGYIPSNYVTE 54

The Tec (Tyrosine kinase expressed in hepatocellular carcinoma) subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. They are cytoplasmic (or nonreceptor) tyr kinases containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|213017 cd12141, SH3_DNMBP_C2, Second C-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba, and similar domains

 Score = 51.7 bits (124), Expect = 5e-10
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQN----WWKGKCMGRVGYFPSNYVIK 77
          +  +Y FK+R  +EL +    +V +++ SD      WW  +  G+ GY PSNY+ K
Sbjct: 2  YYAVYTFKARSPNELSVSANQRVRILEFSDLTGNKEWWLAEANGQKGYVPSNYIRK 57

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. The C-terminal SH3 domains of DNMBP bind to N-WASP and Ena/VASP proteins, which are key regulatory proteins of the actin cytoskeleton. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212753 cd11819, SH3_Cortactin_like, Src homology 3 domain of Cortactin and related proteins

 Score = 51.2 bits (123), Expect = 7e-10
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYV 75
            LY++++   +E+    G  +T I+  D+ WW G    G+ G FP+NYV
Sbjct: 3  KALYDYQAAEDNEISFVEGDIITQIEQIDEGWWLGVNAKGQKGLFPANYV 52

This subfamily includes cortactin, Abp1 (actin-binding protein 1), hematopoietic lineage cell-specific protein 1 (HS1), and similar proteins. These proteins are involved in regulating actin dynamics through direct or indirect interaction with the Arp2/3 complex, which is required to initiate actin polymerization. They all contain at least one C-terminal SH3 domain. Cortactin and HS1 bind Arp2/3 and actin through an N-terminal region that contains an acidic domain and several copies of a repeat domain found in cortactin and HS1. Abp1 binds actin via an N-terminal actin-depolymerizing factor (ADF) homology domain. Yeast Abp1 binds Arp2/3 directly through two acidic domains. Mammalian Abp1 does not directly interact with Arp2/3; instead, it regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. The C-terminal region of these proteins acts as an adaptor or scaffold that can connect membrane trafficking and signaling proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212806 cd11873, SH3_CD2AP-like_1, First Src Homology 3 domain (SH3A) of CD2-associated protein and similar proteins

 Score = 51.1 bits (123), Expect = 7e-10
 Identities = 17/50 (34%), Positives = 29/50 (58%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
           +V +++ +   DEL LK G  +T +   ++ WW+G   G+ G FP N+V
Sbjct: 2  VIVEFDYDAEEPDELTLKVGDIITNVKKMEEGWWEGTLNGKRGMFPDNFV 51

This subfamily is composed of the first SH3 domain (SH3A) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3A of both proteins bind to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic domain of the cell adhesion protein CD2. CIN85 SH3A binds to internal proline-rich motifs within the proline-rich region; this intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. CIN85 SH3A has also been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212928 cd11995, SH3_Intersectin1_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-1

 Score = 50.7 bits (121), Expect = 9e-10
 Identities = 20/47 (42%), Positives = 32/47 (68%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          +Y++ +++ DEL    G  + V++  D +WWKG+  G+VG FPSNYV
Sbjct: 6  MYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGELNGQVGLFPSNYV 52

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212809 cd11876, SH3_MLK, Src Homology 3 domain of Mixed Lineage Kinases

 Score = 51.0 bits (122), Expect = 1e-09
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTS-----DQNWWKGKCMGRVGYFPSNYV 75
          L+  L+++ +R  DEL L+ G  V V+        D+ WW GK   +VG FPSNYV
Sbjct: 1  LWTALFDYDARGEDELTLRRGQPVEVLSKDAAVSGDEGWWTGKIGDKVGIFPSNYV 56

MLKs are Serine/Threonine Kinases (STKs), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. Mammals have four MLKs (MLK1-4), mostly conserved in vertebrates, which contain an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212991 cd12058, SH3_MLK4, Src Homology 3 domain of Mixed Lineage Kinase 4

 Score = 50.7 bits (121), Expect = 1e-09
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVID-----TSDQNWWKGKCMGRVGYFPSNYV 75
          L+  LY++++   DEL L+ G  V V+      + D  WW GK   R+G FP+NYV
Sbjct: 1  LWTALYDYEASGEDELSLRRGDVVEVLSQDAAVSGDDGWWAGKIRHRLGIFPANYV 56

MLK4 is a Serine/Threonine Kinase (STK), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. The specific function of MLK4 is yet to be determined. Mutations in the kinase domain of MLK4 have been detected in colorectal cancers. MLK4 contains an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212783 cd11849, SH3_SPIN90, Src homology 3 domain of SH3 protein interacting with Nck, 90 kDa (SPIN90)

 Score = 50.8 bits (122), Expect = 1e-09
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWK-GKCMGRVGYFPSNYV 75
          LY+FKS   + L    G    +++ S+ +WW      G  GY P+NYV
Sbjct: 5  LYDFKSAEPNTLSFSEGETFLLLERSNAHWWLVTNHSGETGYVPANYV 52

SPIN90 is also called NCK interacting protein with SH3 domain (NCKIPSD), Dia-interacting protein (DIP), 54 kDa vimentin-interacting protein (VIP54), or WASP-interacting SH3-domain protein (WISH). It is an F-actin binding protein that regulates actin polymerization and endocytosis. It associates with the Arp2/3 complex near actin filaments and determines filament localization at the leading edge of lamellipodia. SPIN90 is expressed in the early stages of neuronal differentiation and plays a role in regulating growth cone dynamics and neurite outgrowth. It also interacts with IRSp53 and regulates cell motility by playing a role in the formation of membrane protrusions. SPIN90 contains an N-terminal SH3 domain, a proline-rich domain, and a C-terminal VCA (verprolin-homology and cofilin-like acidic) domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212881 cd11948, SH3_GRAP_N, N-terminal Src homology 3 domain of GRB2-related adaptor protein

 Score = 50.6 bits (121), Expect = 1e-09
 Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSD-QNWWKGKCMGRVGYFPSNYV 75
          V LY+F++  +DEL  + G  + +++  D QNW+K +  GR GY P NY+
Sbjct: 3  VALYSFQATESDELPFQKGDILKILNMEDDQNWYKAELQGREGYIPKNYI 52

GRAP is a GRB-2 like adaptor protein that is highly expressed in lymphoid tissues. It acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. It has been identified as a regulator of TGFbeta signaling in diabetic kidney tubules and may have a role in the pathogenesis of the disease. GRAP contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The N-terminal SH3 domain of the related protein GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212737 cd11803, SH3_Endophilin_A, Src homology 3 domain of Endophilin-A

 Score = 50.3 bits (121), Expect = 1e-09
 Identities = 19/47 (40%), Positives = 30/47 (63%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          LY+F+  +  EL  K G  +T+ +  D+NW++G   G+ G+FP NYV
Sbjct: 6  LYDFEPENEGELGFKEGDIITLTNQIDENWYEGMVNGQSGFFPVNYV 52

Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms (A1, A2, and A3). Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. They tubulate membranes and regulate calcium influx into neurons to trigger the activation of the endocytic machinery. They are also involved in the sorting of plasma membrane proteins, actin filament assembly, and the uncoating of clathrin-coated vesicles for fusion with endosomes. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212985 cd12052, SH3_CIN85_1, First Src Homology 3 domain (SH3A) of Cbl-interacting protein of 85 kDa

 Score = 50.3 bits (120), Expect = 1e-09
 Identities = 20/49 (40%), Positives = 31/49 (63%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          +V +++K++H DEL +  G  +T I   D  WW+G+  GR G FP N+V
Sbjct: 3  IVEFDYKAQHEDELTITVGDIITKIKKDDGGWWEGEIKGRRGLFPDNFV 51

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CIN85; SH3A binds to internal proline-rich motifs within the proline-rich region. This intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. SH3A has also been shown to bind ubiquitin and to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic end of the cell adhesion protein CD2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212853 cd11920, SH3_Sorbs2_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 50.0 bits (119), Expect = 2e-09
 Identities = 22/50 (44%), Positives = 34/50 (68%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
          +Y+FK++ + EL  K G  V ++   DQNW++G+  GRVG FP +YV K+
Sbjct: 6  VYDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEHHGRVGIFPISYVEKL 55

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212894 cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src homology 3 domain of Fungal Actin-binding protein 1

 Score = 49.8 bits (119), Expect = 2e-09
 Identities = 19/47 (40%), Positives = 27/47 (57%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          LY++ +   +EL      K+  I+  D +WW G+C G  G FPSNYV
Sbjct: 5  LYDYDAAEDNELSFFENDKIINIEFVDDDWWLGECHGSRGLFPSNYV 51

Abp1 is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a central proline-rich region, and a C-terminal SH3 domain (many yeast Abp1 proteins contain two C-terminal SH3 domains). Yeast Abp1 also contains two acidic domains that bind directly to the Arp2/3 complex, which is required to initiate actin polymerization. The SH3 domain of yeast Abp1 binds and localizes the kinases, Ark1p and Prk1p, which facilitate actin patch disassembly following vesicle internalization. It also mediates the localization to the actin patch of the synaptojanin-like protein, Sjl2p, which plays a key role in endocytosis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212992 cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixed Lineage Kinases 1, 2, and 3

 Score = 49.8 bits (119), Expect = 2e-09
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTS-----DQNWWKGKCMGRVGYFPSNYV 75
          ++  ++++++   DEL L+ G +V V+        D+ WW GK   RVG FPSNYV
Sbjct: 1  VWTAVFDYEASAEDELTLRRGDRVEVLSKDSAVSGDEGWWTGKINDRVGIFPSNYV 56

MLKs 1, 2, and 3 are Serine/Threonine Kinases (STKs), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. Little is known about the specific function of MLK1, also called MAP3K9. It is capable of activating the c-Jun N-terminal kinase pathway. Mice lacking both MLK1 and MLK2 are viable, fertile, and have normal life spans. MLK2, also called MAP3K10, is abundant in brain, skeletal muscle, and testis. It functions upstream of the MAPK, c-Jun N-terminal kinase. It binds hippocalcin, a calcium-sensor protein that protects neurons against calcium-induced cell death. Both MLK2 and hippocalcin may be associated with the pathogenesis of Parkinson's disease. MLK3, also called MAP3K11, is highly expressed in breast cancer cells and its signaling through c-Jun N-terminal kinase has been implicated in the migration, invasion, and malignancy of cancer cells. It also functions as a negative regulator of Inhibitor of Nuclear Factor-KappaB Kinase (IKK) and thus, impacts inflammation and immunity. MLKs contain an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212941 cd12008, SH3_Src, Src homology 3 domain of Src Protein Tyrosine Kinase

 Score = 49.7 bits (118), Expect = 3e-09
 Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 2/52 (3%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
          FV LY+++SR   +L  K G ++ +++ ++ +WW    +  G+ GY PSNYV
Sbjct: 2  FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 53

Src (or c-Src) is a cytoplasmic (or non-receptor) PTK and is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells, and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212994 cd12061, SH3_betaPIX, Src Homology 3 domain of beta-Pak Interactive eXchange factor

 Score = 48.9 bits (116), Expect = 4e-09
 Identities = 19/49 (38%), Positives = 28/49 (57%)

Query: 30 YNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
          +NF+  + DEL    G  + V    +  WW+G   GR G+FPSNYV ++
Sbjct: 6  FNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI 54

Beta-PIX, also called Rho guanine nucleotide exchange factor 7 (ARHGEF7) or Cool (Cloned out of Library)-1, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and plays important roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212993 cd12060, SH3_alphaPIX, Src Homology 3 domain of alpha-Pak Interactive eXchange factor

 Score = 49.2 bits (117), Expect = 4e-09
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 30 YNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQ 79
          +NFK  + DEL +  G  + V    +  WW+G   G+ G+FPSNYV +++
Sbjct: 8  FNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGKTGWFPSNYVREIK 57

Alpha-PIX, also called Rho guanine nucleotide exchange factor 6 (ARHGEF6) or Cool (Cloned out of Library)-2, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and is localized in dendritic spines where it regulates spine morphogenesis. It controls dendritic length and spine density in the hippocampus. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212717 cd11783, SH3_SH3RF_3, Third Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains

 Score = 48.9 bits (117), Expect = 5e-09
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
          ++V LY +K +  DEL+L+ G   TV +     W+KG  +  G+ G FP NYV
Sbjct: 1  IYVALYPYKPQKPDELELRKGEMYTVTEKCQDGWFKGTSLRTGQSGVFPGNYV 53

SH3RF1 (or POSH) and SH3RF3 (or POSH2) are scaffold proteins that function as E3 ubiquitin-protein ligases. They contain an N-terminal RING finger domain and four SH3 domains. This model represents the third SH3 domain, located in the middle of SH3RF1 and SH3RF3, and similar domains. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212929 cd11996, SH3_Intersectin2_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-2

 Score = 48.8 bits (116), Expect = 5e-09
 Identities = 18/49 (36%), Positives = 30/49 (61%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          + +Y++ + + DEL    G  + V++  D +WW+G+  G  G FPSNYV
Sbjct: 4  IAMYDYTANNEDELSFSKGQLINVLNKDDPDWWQGEINGVTGLFPSNYV 52

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212760 cd11826, SH3_Abi, Src homology 3 domain of Abl Interactor proteins

 Score = 48.5 bits (116), Expect = 6e-09
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          V LY++ +   DEL  + G  + V   +D  W++G   G  G FP NYV
Sbjct: 3  VALYDYTADKDDELSFQEGDIIYVTKKNDDGWYEGVLNGVTGLFPGNYV 51

Abl interactor (Abi) proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. They localize to sites of actin polymerization in epithelial adherens junction and immune synapses, as well as to the leading edge of lamellipodia. Vertebrates contain two Abi proteins, Abi1 and Abi2. Abi1 displays a wide expression pattern while Abi2 is highly expressed in the eye and brain. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212714 cd11780, SH3_Sorbs_3, Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 48.5 bits (116), Expect = 8e-09
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
          +  LY++  ++ DEL+L+ G  V V++  D  W+ G     G  G FP NYV
Sbjct: 2  YRALYSYTPQNEDELELREGDIVYVMEKCDDGWFVGTSERTGLFGTFPGNYV 53

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the third SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212699 cd11765, SH3_Nck_1, First Src Homology 3 domain of Nck adaptor proteins

 Score = 48.2 bits (115), Expect = 8e-09
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWK-GKCMGRVGYFPSNYV 75
          V  Y++ ++   EL +K   K+T++D S ++WWK      + GY PSNYV
Sbjct: 3  VAKYDYTAQGDQELSIKKNEKLTLLDDS-KHWWKVQNSSNQTGYVPSNYV 51

Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The first SH3 domain of Nck proteins preferentially binds the PxxDY sequence, which is present in the CD3e cytoplasmic tail. This binding inhibits phosphorylation by Src kinases, resulting in the downregulation of TCR surface expression. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212989 cd12056, SH3_CD2AP_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein

 Score = 48.3 bits (115), Expect = 1e-08
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)

Query: 29 LYNFKSRHADELDLKPGYKVTVI--DTSDQNWWKGKCMGRVGYFPSNYV 75
          L++++  + DELD K G  + +I  DT +  WWKG+  G+ G FP N+V
Sbjct: 7  LFHYEGTNEDELDFKEGEIILIISKDTGEPGWWKGELNGKEGVFPDNFV 55

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CD2AP. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212911 cd11978, SH3_VAV3_2, C-terminal (or second) Src homology 3 domain of VAV3 protein

 Score = 48.1 bits (114), Expect = 1e-08
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 30 YNFKSRHADELDLKPGYKVTV-IDTSDQNWWKGKCMGRVGYFPSNYV 75
          Y+F +R   EL L  G  V +    S   WW+G+  GRVG+FPS YV
Sbjct: 7  YDFCARDMRELSLLKGDVVKIYTKMSTNGWWRGEVNGRVGWFPSTYV 53

VAV3 is ubiquitously expressed and functions as a phosphorylation-dependent guanine nucleotide exchange factor (GEF) for RhoA, RhoG, and Rac1. It has been implicated to function in the hematopoietic, bone, cerebellar, and cardiovascular systems. VAV3 is essential in axon guidance in neurons that control blood pressure and respiration. It is overexpressed in prostate cancer cells and it plays a role in regulating androgen receptor transcriptional activity. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212761 cd11827, SH3_MyoIe_If_like, Src homology 3 domain of Myosins Ie, If, and similar proteins

 Score = 47.8 bits (114), Expect = 1e-08
 Identities = 17/49 (34%), Positives = 25/49 (51%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIK 77
          LY + ++  DEL    G  + ++      WW G+  G+ G FP NYV K
Sbjct: 5  LYAYDAQDTDELSFNEGDIIEILKEDPSGWWTGRLRGKEGLFPGNYVEK 53

Myosins Ie (MyoIe) and If (MyoIf) are nonmuscle, unconventional, long tailed, class I myosins containing an N-terminal motor domain and a myosin tail with TH1, TH2, and SH3 domains. MyoIe interacts with the endocytic proteins, dynamin and synaptojanin-1, through its SH3 domain; it may play a role in clathrin-dependent endocytosis. In the kidney, MyoIe is critical for podocyte function and normal glomerular filtration. Mutations in MyoIe is associated with focal segmental glomerulosclerosis, a disease characterized by massive proteinuria and progression to end-stage kidney disease. MyoIf is predominantly expressed in the immune system; it plays a role in immune cell motility and innate immunity. Mutations in MyoIf may be associated with the loss of hearing. The MyoIf gene has also been found to be fused to the MLL (Mixed lineage leukemia) gene in infant acute myeloid leukemias (AML). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212758 cd11824, SH3_PSTPIP1, Src homology 3 domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1

 Score = 47.8 bits (114), Expect = 1e-08
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIK 77
          + VLY++ ++  DEL +  G  V VI+  +  WW  +  G+ G  P  Y+ K
Sbjct: 2  YSVLYDYTAQEDDELSISKGDVVAVIEKGEDGWWTVERNGQKGLVPGTYLEK 53

PSTPIP1, also called CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212777 cd11843, SH3_PACSIN, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

 Score = 47.8 bits (114), Expect = 1e-08
 Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 29 LYNFKSRHADELDLKPGYKVTVI-DTSDQNWWKGKCMGRVGYFPSNYV 75
          LY+++ + +DEL  K G  +T + +  +Q W KG+  GRVG +P+NYV
Sbjct: 5  LYDYEGQESDELSFKAGDILTKLEEEDEQGWCKGRLDGRVGLYPANYV 52

PACSINs, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212718 cd11784, SH3_SH3RF2_3, Third Src Homology 3 domain of SH3 domain containing ring finger 2

 Score = 47.8 bits (114), Expect = 1e-08
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVI 76
          + V L+++ +   +EL+L+ G  V V+    + W +G  +  GRVG FPSNYV 
Sbjct: 1  MCVALHSYSAHRPEELELQKGEGVRVLGKFQEGWLRGLSLVTGRVGIFPSNYVS 54

SH3RF2 is also called POSHER (POSH-eliminating RING protein) or HEPP1 (heart protein phosphatase 1-binding protein). It acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1 (or POSH), a scaffold protein that is required for pro-apoptotic JNK activation. It may also play a role in cardiac functions together with protein phosphatase 1. SH3RF2 contains an N-terminal RING finger domain and three SH3 domains. This model represents the third SH3 domain, located in the middle, of SH3RF2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212746 cd11812, SH3_AHI-1, Src Homology 3 domain of Abelson helper integration site-1 (AHI-1)

 Score = 47.5 bits (113), Expect = 2e-08
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSNYV 75
          V LY++ +  +DEL +  G  + V+   + NWW G  + G+ GYFP+NYV
Sbjct: 3  VALYDYTANRSDELTIHRGDIIRVLYKDNDNWWFGSLVNGQQGYFPANYV 52

AHI-1, also called Jouberin, is expressed in high levels in the brain, gonad tissues, and skeletal muscle. It is an adaptor protein that interacts with the small GTPase Rab8a and regulates it distribution and function, affecting cilium formation and vesicle transport. Mutations in the AHI-1 gene can cause Joubert syndrome, a disorder characterized by brainstem malformations, cerebellar aplasia/hypoplasia, and retinal dystrophy. AHI-1 variation is also associated with susceptibility to schizophrenia and type 2 diabetes mellitus progression. AHI-1 contains WD40 and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212762 cd11828, SH3_ARHGEF9_like, Src homology 3 domain of ARHGEF9-like Rho guanine nucleotide exchange factors

 Score = 47.4 bits (113), Expect = 2e-08
 Identities = 16/47 (34%), Positives = 28/47 (59%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          L++  +   +EL  K G  + V+D SD++WW G      G+FP+++V
Sbjct: 5  LWDHVTMDPEELGFKAGDVIEVLDMSDKDWWWGSIRDEEGWFPASFV 51

Members of this family contain a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. They include the Rho guanine nucleotide exchange factors ARHGEF9, ASEF (also called ARHGEF4), ASEF2, and similar proteins. GEFs activate small GTPases by exchanging bound GDP for free GTP. ARHGEF9 specifically activates Cdc42, while both ASEF and ASEF2 can activate Rac1 and Cdc42. ARHGEF9 is highly expressed in the brain and it interacts with gephyrin, a postsynaptic protein associated with GABA and glycine receptors. ASEF plays a role in angiogenesis and cell migration. ASEF2 is important in cell migration and adhesion dynamics. ASEF exists in an autoinhibited form and is activated upon binding of the tumor suppressor APC (adenomatous polyposis coli), leading to the activation of Rac1 or Cdc42. In its autoinhibited form, the SH3 domain of ASEF forms an extensive interface with the DH and PH domains, blocking the Rac binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212987 cd12054, SH3_CD2AP_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein

 Score = 47.3 bits (112), Expect = 2e-08
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          VL+ +  ++ DEL+LK G  + + +  ++ WW G   G+ G FPSN+V
Sbjct: 5  VLFEYVPQNEDELELKVGDIIDINEEVEEGWWSGTLNGKSGLFPSNFV 52

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CD2AP. SH3B binds to c-Cbl in a site (TPSSRPLR is the core binding motif) distinct from the c-Cbl/SH3A binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212752 cd11818, SH3_Eve1_5, Fifth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 47.1 bits (112), Expect = 2e-08
 Identities = 17/46 (36%), Positives = 27/46 (58%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNY 74
          LY+F   + DEL  K G  +T +++ D+ W  G+  G+ G FP N+
Sbjct: 5  LYDFTGENEDELSFKAGDIITELESIDEEWMSGELRGKSGIFPKNF 50

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212738 cd11804, SH3_GRB2_like_N, N-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 46.6 bits (111), Expect = 3e-08
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDT-SDQNWWKGKCMGRVGYFPSNYV 75
          V  ++FK+   DEL  K G  + V++   D NW+K +  G+ G  P NY+
Sbjct: 3  VAKHDFKATAEDELSFKKGSILKVLNMEDDPNWYKAELDGKEGLIPKNYI 52

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The N-terminal SH3 domain of GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212730 cd11796, SH3_DNMBP_N3, Third N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 46.6 bits (111), Expect = 3e-08
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
           VL +  ++  +ELDL+ G  VT+    D+ W++G+  GR G FP  +V
Sbjct: 3  RVLQDLSAQLDEELDLREGDVVTITGILDKGWFRGELNGRRGIFPEGFV 51

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP binds the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212812 cd11879, SH3_Bem1p_2, Second Src Homology 3 domain of Bud emergence protein 1 and similar domains

 Score = 46.6 bits (111), Expect = 4e-08
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVG---YFPSNYV 75
          +VLY+FK+   DELD K G  + +   S+  W+  K +GR+G     P ++V
Sbjct: 3  IVLYDFKAERPDELDAKAGDAIIICAHSNYEWFVAKPIGRLGGPGLIPVSFV 54

Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 56

>gnl|CDD|212990 cd12057, SH3_CIN85_3, Third Src Homology 3 domain (SH3C) of Cbl-interacting protein of 85 kDa

 Score = 46.4 bits (110), Expect = 4e-08
 Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 2/50 (4%)

Query: 28 VLYNFKSRHADELDLKPGYKVTVI--DTSDQNWWKGKCMGRVGYFPSNYV 75
          VL+ +++++ DEL +K G  VT+I  D  D  WW+G+  GR G FP N+V
Sbjct: 4  VLFPYEAQNEDELTIKEGDIVTLISKDCIDAGWWEGELNGRRGVFPDNFV 53

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CIN85. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212751 cd11817, SH3_Eve1_4, Fourth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 46.3 bits (110), Expect = 5e-08
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNY 74
          V LY+F     ++L  + G ++ V +  D  W +G+  GR G FP  +
Sbjct: 3  VALYDFTGETEEDLSFQRGDRILVTEHLDAEWSRGRLNGREGIFPRAF 50

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212895 cd11962, SH3_Abp1_fungi_C1, First C-terminal Src homology 3 domain of Fungal Actin-binding protein 1

 Score = 46.3 bits (110), Expect = 5e-08
 Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKG-KCMGRVGYFPSNYV 75
          VVLY+++    +E++L  G  VT I+  D++WW G    G  G FPSNYV
Sbjct: 3  VVLYDYEKDEDNEIELVEGEIVTNIEMVDEDWWMGTNSKGESGLFPSNYV 52

Abp1 is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a central proline-rich region, and a C-terminal SH3 domain (many yeast Abp1 proteins contain two C-terminal SH3 domains). Yeast Abp1 also contains two acidic domains that bind directly to the Arp2/3 complex, which is required to initiate actin polymerization. The SH3 domain of yeast Abp1 binds and localizes the kinases, Ark1p and Prk1p, which facilitate actin patch disassembly following vesicle internalization. It also mediates the localization to the actin patch of the synaptojanin-like protein, Sjl2p, which plays a key role in endocytosis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|213009 cd12076, SH3_Tks4_2, Second Src homology 3 domain of Tyrosine kinase substrate with four SH3 domains

 Score = 46.2 bits (109), Expect = 5e-08
 Identities = 18/52 (34%), Positives = 33/52 (63%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIK 77
          + V+Y + +R  DE++L+ G  V VI  + + WWK +  G+ G+ P++Y+ K
Sbjct: 3  YTVIYPYTARDQDEINLEKGAVVEVIQKNLEGWWKIRYQGKEGWAPASYLKK 54

Tks4, also called SH3 and PX domain-containing protein 2B (SH3PXD2B) or HOFI, is a Src substrate and scaffolding protein that plays an important role in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. It is required in the formation of functional podosomes, EGF-induced membrane ruffling, and lamellipodia generation. It plays an important role in cellular attachment and cell spreading. Tks4 is essential for the localization of MT1-MMP (membrane-type 1 matrix metalloproteinase) to invadopodia. It contains an N-terminal Phox homology (PX) domain and four SH3 domains. This model characterizes the second SH3 domain of Tks4. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212858 cd11925, SH3_SH3RF3_3, Third Src Homology 3 domain of SH3 domain containing ring finger 3, an E3 ubiquitin-protein ligase

 Score = 46.1 bits (109), Expect = 7e-08
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
          N+++ LY +K +  DEL+L+ G    VI+     W+KG  +  G  G FP NYV  V
Sbjct: 1  NIYLALYAYKPQKNDELELRKGEMYRVIEKCQDGWFKGTSLRTGVSGVFPGNYVTPV 57

SH3RF3 is also called POSH2 (Plenty of SH3s 2) or SH3MD4 (SH3 multiple domains protein 4). It is a scaffold protein with E3 ubiquitin-protein ligase activity. It was identified in the screen for interacting partners of p21-activated kinase 2 (PAK2). It may play a role in regulating JNK mediated apoptosis in certain conditions. It also interacts with GTP-loaded Rac1. SH3RF3 is highly homologous to SH3RF1; it also contains an N-terminal RING finger domain and four SH3 domains. This model represents the third SH3 domain, located in the middle, of SH3RF3. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212988 cd12055, SH3_CIN85_2, Second Src Homology 3 domain (SH3B) of Cbl-interacting protein of 85 kDa

 Score = 45.8 bits (108), Expect = 9e-08
 Identities = 17/48 (35%), Positives = 31/48 (64%)

Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          V +++  ++ DEL+LK G  + V+   ++ WW+G   G+ G FPSN++
Sbjct: 4  VAFSYLPQNEDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFI 51

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CIN85. SH3B has been shown to bind Cbl proline-rich peptides and ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212937 cd12004, SH3_Lyn, Src homology 3 domain of Lyn Protein Tyrosine Kinase

 Score = 45.8 bits (108), Expect = 9e-08
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG--RVGYFPSNYVIKV 78
          + V LY +   H D+L  K G K+ VI+   + WWK + +   + G+ PSNYV KV
Sbjct: 1  IVVALYPYDGIHEDDLSFKKGEKLKVIEEHGE-WWKARSLTTKKEGFIPSNYVAKV 55

Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212938 cd12005, SH3_Lck, Src homology 3 domain of Lck Protein Tyrosine Kinase

 Score = 45.6 bits (108), Expect = 9e-08
 Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIK 77
          L V LY+++  H  +L  + G K+ +++ S + WWK + +  G+ G+ P N+V K
Sbjct: 1  LVVALYSYEPSHDGDLGFEKGEKLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAK 54

Lck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. Lck is expressed in T-cells and natural killer cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212839 cd11906, SH3_BTK, Src Homology 3 domain of Bruton's tyrosine kinase

 Score = 45.2 bits (107), Expect = 1e-07
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYVI 76
          V LY++   +A +L L+ G +  +++ S+  WW+ +   GR GY PSNYV 
Sbjct: 4  VALYDYTPMNAQDLQLRKGEEYVILEESNLPWWRARDKNGREGYIPSNYVT 54

BTK is a cytoplasmic (or nonreceptor) tyr kinase containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. It also contains an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation, and the Tec homology (TH) domain with proline-rich and zinc-binding regions. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212716 cd11782, SH3_Sorbs_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 45.4 bits (108), Expect = 1e-07
 Identities = 18/49 (36%), Positives = 27/49 (55%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
             YNF +    EL  + G  +T+    D+NW++G+  GR G FP +YV
Sbjct: 3  RAKYNFNADTGVELSFRKGDVITLTRRVDENWYEGRIGGRQGIFPVSYV 51

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the second SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212705 cd11771, SH3_Pex13p_fungal, Src Homology 3 domain of fungal peroxisomal membrane protein Pex13p

 Score = 45.3 bits (108), Expect = 1e-07
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 7/55 (12%)

Query: 28 VLYNFKSRHAD-ELDLKPGYKVTVIDTSDQ-----NWWKGKCM-GRVGYFPSNYV 75
           LY+F   + + EL LK G  V V+  +D       WWKG+   GR+G+FPSNYV
Sbjct: 4  ALYDFTPENPEMELSLKKGDIVAVLSKTDPLGRDSEWWKGRTRDGRIGWFPSNYV 58

Pex13p, located in the peroxisomal membrane, contains two transmembrane regions and a C-terminal SH3 domain. It binds to the peroxisomal targeting type I (PTS1) receptor Pex5p and the docking factor Pex14p through its SH3 domain. It is essential for both PTS1 and PTS2 protein import pathways into the peroxisomal matrix. Pex13p binds Pex14p, which contains a PxxP motif, in a classical fashion to the proline-rich ligand binding site of its SH3 domain. It binds the WxxxF/Y motif of Pex5p in a novel site that does not compete with Pex14p binding. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|212703 cd11769, SH3_CSK, Src Homology 3 domain of C-terminal Src kinase

 Score = 45.4 bits (108), Expect = 1e-07
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVI-DTSDQNWWKGK-CMGRVGYFPSNYVIK 77
          +  YNF     ++L  K G  +T++  T D NW+K K   GR G  P+NYV K
Sbjct: 5  IAKYNFNGASEEDLPFKKGDILTIVAVTKDPNWYKAKNKDGREGMIPANYVQK 57

CSK is a cytoplasmic (or nonreceptor) tyr kinase containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, CSK is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. CSK catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. It is expressed in a wide variety of tissues and plays a role, as a regulator of Src, in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, CSK also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212781 cd11847, SH3_Brk, Src homology 3 domain of Brk (Breast tumor kinase) Protein Tyrosine Kinase (PTK), also called PTK6

 Score = 45.2 bits (107), Expect = 1e-07
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWW---KGKCMGRV--GYFPSNYV 75
          ++  L++FK+R  +EL  + G +  + + S   W      +  G V  G+ P+NY+
Sbjct: 1  IYKALWDFKARGDEELSFQAGDQFRIAERSGDWWTALKLDRAGGVVAQGFVPNNYL 56

Brk is a cytoplasmic (or non-receptor) PTK with limited homology to Src kinases. It has been found to be overexpressed in a majority of breast tumors. It plays roles in normal cell differentiation, proliferation, survival, migration, and cell cycle progression. Brk substrates include RNA-binding proteins (SLM-1/2, Sam68), transcription factors (STAT3/5), and signaling molecules (Akt, paxillin, IRS-4). Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). However, Brk lacks the N-terminal myristoylation site. The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212838 cd11905, SH3_Tec, Src Homology 3 domain of Tec (Tyrosine kinase expressed in hepatocellular carcinoma)

 Score = 45.2 bits (107), Expect = 1e-07
 Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYV 75
          V +Y+F+     +L L+ G +  +++ +D +WWK +   G+ GY PSNYV
Sbjct: 4  VAMYDFQPTEPHDLRLETGEEYVILEKNDVHWWKARDKYGKEGYIPSNYV 53

Tec is a cytoplasmic (or nonreceptor) tyr kinase containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. It also contains an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation, and the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. It is more widely-expressed than other Tec subfamily kinases. Tec is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Tec is a key component of T-cell receptor (TCR) signaling, and is important in TCR-stimulated proliferation, IL-2 production and phospholipase C-gamma1 activation. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212904 cd11971, SH3_Abi1, Src homology 3 domain of Abl Interactor 1

 Score = 45.0 bits (106), Expect = 2e-07
 Identities = 19/49 (38%), Positives = 26/49 (53%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          V +Y++     DEL    G  + VI  +D  W++G C G  G FP NYV
Sbjct: 3  VAIYDYSKDKDDELSFMEGAIIYVIKKNDDGWYEGVCNGVTGLFPGNYV 51

Abi1, also called e3B1, is a central regulator of actin cytoskeletal reorganization through interactions with many protein complexes. It is part of WAVE, a nucleation-promoting factor complex, that links Rac 1 activation to actin polymerization causing lamellipodia protrusion at the plasma membrane. Abi1 interact with formins to promote protrusions at the leading edge of motile cells. It also is a target of alpha4 integrin, regulating membrane protrusions at sites of integrin engagement. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212957 cd12024, SH3_NoxO1_2, Second or C-terminal Src homology 3 domain of NADPH oxidase (Nox) Organizing protein 1

 Score = 44.6 bits (106), Expect = 2e-07
 Identities = 18/50 (36%), Positives = 26/50 (52%)

Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNY 74
          L+     ++++  DEL +  G  V V+  SD  WW  +  GR GY PS Y
Sbjct: 1  LYYATRAYEAQKEDELSVPAGVVVEVLQKSDNGWWLIRYNGRAGYVPSMY 50

Nox Organizing protein 1 (NoxO1) is a critical regulator of enzyme kinetics of the nonphagocytic NADPH oxidase Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Nox1 is expressed in colon, stomach, uterus, prostate, and vascular smooth muscle cells. NoxO1 is involved in targeting activator subunits (such as NoxA1) to Nox1. It is co-localized with Nox1 in the membranes of resting cells and directs the subcellular localization of Nox1. NoxO1 contains an N-terminal Phox homology (PX) domain, tandem SH3 domains (N-SH3 and C-SH3), and a C-terminal proline-rich region (PRR). This model characterizes the second SH3 domain (or C-SH3) of NoxO1. The tandem SH3 domains of NoxO1 interact with the PRR of p22phox, which also complexes with Nox1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212859 cd11926, SH3_SH3RF1_3, Third Src Homology 3 domain of SH3 domain containing ring finger 1, an E3 ubiquitin-protein ligase

 Score = 45.0 bits (106), Expect = 2e-07
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
          ++V +Y +  R  DEL+L+ G    V +     W+KG  M   ++G FP NYV
Sbjct: 1  VYVAIYPYTPRKEDELELRKGEMFLVFERCQDGWFKGTSMHTSKIGVFPGNYV 53

SH3RF1 is also called POSH (Plenty of SH3s) or SH3MD2 (SH3 multiple domains protein 2). It is a scaffold protein that acts as an E3 ubiquitin-protein ligase. It plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF1 also enhances the ubiquitination of ROMK1 potassium channel resulting in its increased endocytosis. It contains an N-terminal RING finger domain and four SH3 domains. This model represents the third SH3 domain, located in the middle, of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212979 cd12046, SH3_p67phox_C, C-terminal (or second) Src Homology 3 domain of the p67phox subunit of NADPH oxidase

 Score = 44.8 bits (106), Expect = 2e-07
 Identities = 14/51 (27%), Positives = 33/51 (64%)

Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
            V L+++++   ++L+ + G  + V+   +++W +G+C G++G FPS +V
Sbjct: 1  QVVALFSYEASQPEDLEFQKGDVILVLSKVNEDWLEGQCKGKIGIFPSAFV 51

p67phox, also called Neutrophil cytosol factor 2 (NCF-2), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox plays a regulatory role and contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. It binds, via its C-terminal SH3 domain, to a proline-rich region of p47phox and upon activation, this complex assembles with flavocytochrome b558, the Nox2-p22phox heterodimer. Concurrently, RacGTP translocates to the membrane and interacts with the TPR domain of p67phox, which leads to the activation of NADPH oxidase. The PB1 domain of p67phox binds to its partner PB1 domain in p40phox, and this facilitates the assembly of p47phox-p67phox at the membrane. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212790 cd11856, SH3_p47phox_like, Src homology 3 domains of the p47phox subunit of NADPH oxidase and similar domains

 Score = 44.5 bits (106), Expect = 2e-07
 Identities = 13/49 (26%), Positives = 30/49 (61%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNY 74
          +V + +++++  DE+ L+ G  V V++ +D  WW  +   + G+ P++Y
Sbjct: 2  YVAIADYEAQGDDEISLQEGEVVEVLEKNDSGWWYVRKGDKEGWVPASY 50

This family is composed of the tandem SH3 domains of p47phox subunit of NADPH oxidase and Nox Organizing protein 1 (NoxO1), the four SH3 domains of Tks4 (Tyr kinase substrate with four SH3 domains), the five SH3 domains of Tks5, the SH3 domain of obscurin, Myosin-I, and similar domains. Most members of this group also contain Phox homology (PX) domains, except for obscurin and Myosin-I. p47phox and NoxO1 are regulators of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) and nonphagocytic NADPH oxidase Nox1, respectively. They play roles in the activation of their respective NADPH oxidase, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Obscurin is a giant muscle protein that plays important roles in the organization and assembly of the myofibril and the sarcoplasmic reticulum. Type I myosins (Myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212852 cd11919, SH3_Sorbs1_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin

 Score = 44.6 bits (105), Expect = 2e-07
 Identities = 19/46 (41%), Positives = 30/46 (65%)

Query: 30 YNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          ++FK++   EL L+ G  V +    DQNW++G+  GRVG FP +Y+
Sbjct: 7  FDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRSYI 52

Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl associated protein). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It binds Cbl and plays a major role in regulating the insulin signaling pathway by enhancing insulin-induced phosphorylation of Cbl. Sorbs1, like vinexin, localizes at cell-ECM and cell-cell adhesion sites where it binds vinculin, paxillin, and afadin. It may function in the control of cell motility. Other interaction partners of Sorbs1 include c-Abl, Sos, flotillin, Grb4, ataxin-7, filamin C, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212932 cd11999, SH3_PACSIN_like, Src homology 3 domain of an unknown subfamily of proteins with similarity to Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

 Score = 44.5 bits (105), Expect = 3e-07
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 29 LYNFKSRHADELDLKPGYKVTVI-DTSDQNWWKG-KCMGRVGYFPSNYV 75
          +Y++  +  DEL  K G ++  + D  +Q W KG    G VG +P+NYV
Sbjct: 7  VYDYTGQEPDELSFKAGEELLKVEDEDEQGWCKGVTDGGAVGLYPANYV 55

PACSINs, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212893 cd11960, SH3_Abp1_eu, Src homology 3 domain of eumetazoan Actin-binding protein 1

 Score = 44.3 bits (105), Expect = 3e-07
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSNYV 75
          LY++++    E+   PG  +T I+  D+ WW+G    G  G FP+NYV
Sbjct: 5  LYDYQAADDTEISFDPGDIITDIEQIDEGWWRGTGPDGTYGLFPANYV 52

Abp1, also called drebrin-like protein, is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a helical domain, and a C-terminal SH3 domain. Mammalian Abp1, unlike yeast Abp1, does not contain an acidic domain that interacts with the Arp2/3 complex. It regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. Abp1 deficiency causes abnormal organ structure and function of the spleen, heart, and lung of mice. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212879 cd11946, SH3_GRB2_N, N-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 44.2 bits (104), Expect = 3e-07
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 30 YNFKSRHADELDLKPGYKVTVID-TSDQNWWKGKCMGRVGYFPSNYV 75
          Y+FK+   DEL  K G  + V++   DQNW+K +  G+ G+ P NY+
Sbjct: 7  YDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYI 53

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. Its N-terminal SH3 domain binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212698 cd11764, SH3_Eps8, Src Homology 3 domain of Epidermal growth factor receptor kinase substrate 8 and similar proteins

 Score = 44.2 bits (105), Expect = 4e-07
 Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 2/47 (4%)

Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSN 73
          VLY+F +R++ EL +  G  + V+D S Q WWK +   G+VGY P N
Sbjct: 4  VLYDFTARNSKELSVLKGEYLEVLDDSRQ-WWKVRNSRGQVGYVPHN 49

This group is composed of Eps8 and Eps8-like proteins including Eps8-like 1-3, among others. These proteins contain N-terminal Phosphotyrosine-binding (PTB), central SH3, and C-terminal effector domains. Eps8 binds either Abi1 (also called E3b1) or Rab5 GTPase activating protein RN-tre through its SH3 domain. With Abi1 and Sos1, it becomes part of a trimeric complex that is required to activate Rac. Together with RN-tre, it inhibits the internalization of EGFR. The SH3 domains of Eps8 and similar proteins recognize peptides containing a PxxDY motif, instead of the classical PxxP motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212742 cd11808, SH3_Alpha_Spectrin, Src homology 3 domain of Alpha Spectrin

 Score = 43.6 bits (103), Expect = 5e-07
 Identities = 17/51 (33%), Positives = 34/51 (66%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIK 77
          V LY+++ +   E+ +K G  +T++++S+++WWK +   R G+ P+ YV K
Sbjct: 3  VALYDYQEKSPREVSMKKGDILTLLNSSNKDWWKVEVNDRQGFVPAAYVKK 53

Spectrin is a major structural component of the red blood cell membrane skeleton and is important in erythropoiesis and membrane biogenesis. It is a flexible, rope-like molecule composed of two subunits, alpha and beta, which consist of many spectrin-type repeats. Alpha and beta spectrin associate to form heterodimers and tetramers; spectrin tetramer formation is critical for red cell shape and deformability. Defects in alpha spectrin have been associated with inherited hemolytic anemias including hereditary spherocytosis (HSp), hereditary elliptocytosis (HE), and hereditary pyropoikilocytosis (HPP). Alpha spectrin contains a middle SH3 domain and a C-terminal EF-hand binding motif in addition to multiple spectrin repeats. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212759 cd11825, SH3_PLCgamma, Src homology 3 domain of Phospholipase C (PLC) gamma

 Score = 43.5 bits (103), Expect = 6e-07
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGR-VGYFPSNYV 75
          LY+++++  DEL       +T ++  D  WW+G   G+   +FP+NYV
Sbjct: 5  LYDYRAQRPDELSFCKHAIITNVEKEDGGWWRGDYGGKKQKWFPANYV 52

PLC catalyzes the hydrolysis of phosphatidylinositol (4,5)-bisphosphate [PtdIns(4,5)P2] to produce Ins(1,4,5)P3 and diacylglycerol (DAG) in response to various receptors. Ins(1,4,5)P3 initiates the calcium signaling cascade while DAG functions as an activator of PKC. PLCgamma catalyzes this reaction in tyrosine kinase-dependent signaling pathways. It is activated and recruited to its substrate at the membrane. Vertebrates contain two forms of PLCgamma, PLCgamma1, which is widely expressed, and PLCgamma2, which is primarily found in haematopoietic cells. PLCgamma contains a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, two catalytic regions of PLC domains that flank two tandem SH2 domains, followed by a SH3 domain and C2 domain. The SH3 domain of PLCgamma1 directly interacts with dynamin-1 and can serve as a guanine nucleotide exchange factor (GEF). It also interacts with Cbl, inhibiting its phosphorylation and activity. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212735 cd11801, SH3_JIP1_like, Src homology 3 domain of JNK-interacting proteins 1 and 2, and similar domains

 Score = 43.1 bits (102), Expect = 8e-07
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVI 76
            L+ F  RH DE++L  G  V V   +D  W +G  +  G+ G FP+ YV+
Sbjct: 3  RALHKFIPRHEDEIELDIGDPVYVEQEADDLWCEGTNLRTGQRGIFPAAYVV 54

JNK-interacting proteins (JIPs) function as scaffolding proteins for c-Jun N-terminal kinase (JNK) signaling pathways. They bind to components of Mitogen-activated protein kinase (MAPK) pathways such as JNK, MKK, and several MAP3Ks such as MLK and DLK. There are four JIPs (JIP1-4); all contain a JNK binding domain. JIP1 and JIP2 also contain SH3 and Phosphotyrosine-binding (PTB) domains. Both are highly expressed in the brain and pancreatic beta-cells. JIP1 functions as an adaptor linking motor to cargo during axonal transport and also is involved in regulating insulin secretion. JIP2 form complexes with fibroblast growth factor homologous factors (FHFs), which facilitates activation of the p38delta MAPK. The SH3 domain of JIP1 homodimerizes at the interface usually involved in proline-rich ligand recognition, despite the lack of this motif in the domain itself. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212915 cd11982, SH3_Shank1, Src homology 3 domain of SH3 and multiple ankyrin repeat domains protein 1

 Score = 43.1 bits (101), Expect = 8e-07
 Identities = 17/50 (34%), Positives = 31/50 (62%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          F+ +  ++S+   E+ L  G K+ V+   +  +W+G+  GRVG+FPS+ V
Sbjct: 3  FMAVKPYQSQAEGEISLSKGEKIKVLSVGEGGFWEGQVKGRVGWFPSDCV 52

Shank1, also called SSTRIP (Somatostatin receptor-interacting protein), is a brain-specific protein that plays a role in the construction of postsynaptic density (PSD) and the maturation of dendritic spines. Mice deficient in Shank1 show altered PSD composition, thinner PSDs, smaller dendritic spines, and weaker basal synaptic transmission, although synaptic plasticity is normal. They show increased anxiety and impaired fear memory, but also show better spatial learning. Shank proteins carry scaffolding functions through multiple sites of protein-protein interaction in its domain architecture, including ankyrin (ANK) repeats, a long proline rich region, as well as SH3, PDZ, and SAM domains. The SH3 domain of Shank binds GRIP, a scaffold protein that binds AMPA receptors and Eph receptors/ligands. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212773 cd11839, SH3_Intersectin_4, Fourth Src homology 3 domain (or SH3D) of Intersectin

 Score = 43.1 bits (102), Expect = 9e-07
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGR-----VGYFPSNYV 75
          V+  F +   ++L L  G  V V   S   WW+G+   R     +G+FP+NYV
Sbjct: 4  VIAPFTATAENQLSLAVGQLVLVRKKSPSGWWEGELQARGKKRQIGWFPANYV 56

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fourth SH3 domain (or SH3D) of ITSN1 has been shown to bind SHIP2, Numb, CdGAP, and N-WASP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212942 cd12009, SH3_Blk, Src homology 3 domain of Blk Protein Tyrosine Kinase

 Score = 42.9 bits (101), Expect = 1e-06
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIK 77
          +  Y+F   +  +L LK G K+ V+  SD  WW  K +  G+ GY PSNYV +
Sbjct: 3  IAQYDFVPSNERDLQLKKGEKLQVL-KSDGEWWLAKSLTTGKEGYIPSNYVAR 54

Blk is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. It is expressed specifically in B-cells and is involved in pre-BCR (B-cell receptor) signaling. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212885 cd11952, SH3_iASPP, Src Homology 3 (SH3) domain of Inhibitor of ASPP protein (iASPP)

 Score = 43.0 bits (101), Expect = 1e-06
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 29 LYNFKSRHADELDLKPGYKVTVI--DTSDQNWWKGKCMGRVGYFPSNY 74
          L+++ +   DEL  K G  VTV+  D    +WW     GR GY P NY
Sbjct: 6  LWDYSAEFPDELSFKEGDMVTVLRKDGEGTDWWWASLCGREGYVPRNY 53

iASPP, also called RelA-associated inhibitor (RAI), is an oncoprotein that inhibits the apoptotic transactivation potential of p53. It is upregulated in human breast cancers expressing wild-type p53, in acute leukemias regardless of the p53 mutation status, as well as in ovarian cancer where it is associated with poor patient outcome and chemoresistance. iASPP is also a binding partner and negative regulator of p65RelA, which promotes cell proliferation and inhibits apoptosis; p65RelA has the opposite effect on cell growth compared to the p53 family. It contains a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain at its C-terminal half. The SH3 domain and the ANK repeats of iASPP contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212930 cd11997, SH3_PACSIN3, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3)

 Score = 43.0 bits (101), Expect = 1e-06
 Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 2/49 (4%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSD-QNWWKGKCM-GRVGYFPSNYV 75
          LY++  + ADEL  K G ++  I   D Q W KG+ + GR+G +P+NYV
Sbjct: 7  LYDYTGQEADELSFKAGEELLKIGEEDEQGWCKGRLLSGRIGLYPANYV 55

PACSIN 3 or Syndapin III (Synaptic dynamin-associated protein III) is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSINs act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212856 cd11923, SH3_Sorbs2_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 43.0 bits (101), Expect = 1e-06
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG--RVGYFPSNYV 75
          V  YNF +    EL L+ G +V ++   DQNW++GK  G  R G FP +YV
Sbjct: 4  VAKYNFNADTNVELSLRKGDRVVLLKQVDQNWYEGKIPGTNRQGIFPVSYV 54

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212902 cd11969, SH3_PLCgamma2, Src homology 3 domain of Phospholipase C (PLC) gamma 2

 Score = 42.5 bits (100), Expect = 1e-06
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVG-YFPSNYV 75
          LY+++++ +DEL    G  +  +      WWKG   G+V  YFPSNYV
Sbjct: 5  LYDYRAKRSDELSFCKGALIHNVSKETGGWWKGDYGGKVQHYFPSNYV 52

PLCgamma2 is primarily expressed in haematopoietic cells, specifically in B cells. It is activated by tyrosine phosphorylation by B cell receptor (BCR) kinases and is recruited to the plasma membrane where its substrate is located. It is required in pre-BCR signaling and in the maturation of B cells. PLCs catalyze the hydrolysis of phosphatidylinositol (4,5)-bisphosphate [PtdIns(4,5)P2] to produce Ins(1,4,5)P3 and diacylglycerol (DAG). Ins(1,4,5)P3 initiates the calcium signaling cascade while DAG functions as an activator of PKC. PLCgamma contains a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, two catalytic regions of PLC domains that flank two tandem SH2 domains, followed by a SH3 domain and C2 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212695 cd11761, SH3_FCHSD_1, First Src Homology 3 domain of FCH and double SH3 domains proteins

 Score = 42.7 bits (101), Expect = 1e-06
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSD-QNWWKGK-CMGRVGYFPSNYV 75
           VLY+++++  DEL +  G ++ VI+  D   W K +   G VGY P NY+
Sbjct: 5  KVLYSYEAQRPDELTITEGEELEVIEDGDGDGWVKARNKSGEVGYVPENYL 55

This group is composed of FCH and double SH3 domains protein 1 (FCHSD1) and FCHSD2. These proteins have a common domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. They have only been characterized in silico and their functions remain unknown. This group also includes the insect protein, nervous wreck, which acts as a regulator of synaptic growth signaling. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212720 cd11786, SH3_SH3RF_1, First Src Homology 3 domain of SH3 domain containing ring finger proteins

 Score = 42.3 bits (100), Expect = 2e-06
 Identities = 17/47 (36%), Positives = 30/47 (63%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          LYN++ +   +L  K G  + +    D+NW+ G+C G+ G+FP++YV
Sbjct: 5  LYNYEGKEPGDLSFKKGDIILLRKRIDENWYHGECNGKQGFFPASYV 51

This model represents the first SH3 domain of SH3RF1 (or POSH), SH3RF2 (or POSHER), SH3RF3 (POSH2), and similar domains. Members of this family are scaffold proteins that function as E3 ubiquitin-protein ligases. They all contain an N-terminal RING finger domain and multiple SH3 domains; SH3RF1 and SH3RF3 have four SH3 domains while SH3RF2 has three. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3RF2 acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212924 cd11991, SH3_Intersectin1_3, Third Src homology 3 domain (or SH3C) of Intersectin-1

 Score = 42.3 bits (99), Expect = 2e-06
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          +V +Y ++S    +L  + G  + V    D +WW G    + G FPSNYV
Sbjct: 2  YVAMYTYESNEQGDLTFQQGDVILVT-KKDGDWWTGTVGDKTGVFPSNYV 50

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The third SH3 domain (or SH3C) of ITSN1 has been shown to bind many proteins including dynamin1/2, CIN85, c-Cbl, SHIP2, Reps1, synaptojanin-1, and WNK, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212769 cd11835, SH3_ARHGAP32_33, Src homology 3 domain of Rho GTPase-activating proteins 32 and 33, and similar proteins

 Score = 42.1 bits (99), Expect = 2e-06
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVID---TSDQNWWKGKCMGRVGYFPSNYV 75
           V+  + ++  DEL L+ G  V+VID     +  WW+GK   +VG+FPS  V
Sbjct: 3  HVIKRYTAQAPDELSLEVGDIVSVIDMPPPEESTWWRGKKGFQVGFFPSECV 54

Members of this family contain N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal extensions. RhoGAPs (or ARHGAPs) bind to Rho proteins and enhance the hydrolysis rates of bound GTP. ARHGAP32 is also called RICS, PX-RICS, p250GAP, or p200RhoGAP. It is a Rho GTPase-activating protein for Cdc42 and Rac1, and is implicated in the regulation of postsynaptic signaling and neurite outgrowth. PX-RICS, a variant of RICS that contain PX and SH3 domains, is the main isoform expressed during neural development. It is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. ARHGAP33, also called sorting nexin 26 or TCGAP (Tc10/CDC42 GTPase-activating protein), is widely expressed in the brain where it is involved in regulating the outgrowth of axons and dendrites and is regulated by the protein tyrosine kinase Fyn. It is translocated to the plasma membrane in adipocytes in response to insulin and may be involved in the regulation of insulin-stimulated glucose transport. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212903 cd11970, SH3_PLCgamma1, Src homology 3 domain of Phospholipase C (PLC) gamma 1

 Score = 42.3 bits (99), Expect = 2e-06
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVG-YFPSNYV 75
          L+++K++  DEL       +  ++  +  WW+G   G+   +FPSNYV
Sbjct: 9  LFDYKAQREDELTFTKNAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYV 56

PLCgamma1 is widely expressed and is essential in growth and development. It is activated by the TrkA receptor tyrosine kinase and functions as a key regulator of cell differentiation. It is also the predominant PLCgamma in T cells and is required for T cell and NK cell function. PLCs catalyze the hydrolysis of phosphatidylinositol (4,5)-bisphosphate [PtdIns(4,5)P2] to produce Ins(1,4,5)P3 and diacylglycerol (DAG). Ins(1,4,5)P3 initiates the calcium signaling cascade while DAG functions as an activator of PKC. PLCgamma contains a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, two catalytic regions of PLC domains that flank two tandem SH2 domains, followed by a SH3 domain and C2 domain. The SH3 domain of PLCgamma1 directly interacts with dynamin-1 and can serve as a guanine nucleotide exchange factor (GEF). It also interacts with Cbl, inhibiting its phosphorylation and activity. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|212692 cd11758, SH3_CRK_N, N-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins

 Score = 41.6 bits (98), Expect = 3e-06
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYVIK 77
          L++F     ++L  K G  +TVI   ++ WW  +   G+ G  P  YV K
Sbjct: 6  LFDFPGNDDEDLPFKKGEILTVIRKPEEQWWNARNSEGKTGMIPVPYVEK 55

CRK adaptor proteins consists of SH2 and SH3 domains, which bind tyrosine-phosphorylated peptides and proline-rich motifs, respectively. They function downstream of protein tyrosine kinases in many signaling pathways started by various extracellular signals, including growth and differentiation factors. Cellular CRK (c-CRK) contains a single SH2 domain, followed by N-terminal and C-terminal SH3 domains. It is involved in the regulation of many cellular processes including cell growth, motility, adhesion, and apoptosis. CRK has been implicated in the malignancy of various human cancers. The N-terminal SH3 domain of CRK binds a number of target proteins including DOCK180, C3G, SOS, and cABL. The CRK family includes two alternatively spliced protein forms, CRKI and CRKII, that are expressed by the CRK gene, and the CRK-like (CRKL) protein, which is expressed by a distinct gene (CRKL). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212920 cd11987, SH3_Intersectin1_1, First Src homology 3 domain (or SH3A) of Intersectin-1

 Score = 41.9 bits (98), Expect = 3e-06
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 29 LYNFKSRHADELDLKPGYKVTVID--TSDQNWWKGKCMGRVGYFPSNYVIK 77
          LY F++R  DE+ ++PG  V V +  T +  W  G+  G+ G+FP+NY  K
Sbjct: 5  LYPFEARSHDEITIQPGDIVMVDESQTGEPGWLGGELKGKTGWFPANYAEK 55

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The first SH3 domain (or SH3A) of ITSN1 has been shown to bind many proteins including Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212740 cd11806, SH3_PRMT2, Src homology 3 domain of Protein arginine N-methyltransferase 2

 Score = 41.6 bits (98), Expect = 3e-06
 Identities = 12/50 (24%), Positives = 26/50 (52%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          +V + +F +    +L  + G K+ V+     +WW  +  G  GY P++++
Sbjct: 2  YVAIADFVATDDSQLSFESGDKLLVLRKPSVDWWWAEHNGCCGYIPASHL 51

PRMT2, also called HRMT1L1, belongs to the arginine methyltransferase protein family. It functions as a coactivator to both estrogen receptor alpha (ER-alpha) and androgen receptor (AR), presumably through arginine methylation. The ER-alpha transcription factor is involved in cell proliferation, differentiation, morphogenesis, and apoptosis, and is also implicated in the development and progression of breast cancer. PRMT2 and its variants are upregulated in breast cancer cells and may be involved in modulating the ER-alpha signaling pathway during formation of breast cancer. PRMT2 also plays a role in regulating the function of E2F transcription factors, which are critical cell cycle regulators, by binding to the retinoblastoma gene product (RB). It contains an N-terminal SH3 domain and an AdoMet binding domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212766 cd11832, SH3_Shank, Src homology 3 domain of SH3 and multiple ankyrin repeat domains (Shank) proteins

 Score = 41.7 bits (98), Expect = 3e-06
 Identities = 14/48 (29%), Positives = 26/48 (54%)

Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPS 72
           F+ + ++  +   E+ L  G +V V+   +  +W+G   GR G+FPS
Sbjct: 1  YFIAVKSYSPQEEGEISLHKGDRVKVLSIGEGGFWEGSVRGRTGWFPS 48

Shank proteins carry scaffolding functions through multiple sites of protein-protein interaction in its domain architecture, including ankyrin (ANK) repeats, a long proline rich region, as well as SH3, PDZ, and SAM domains. They bind a variety of membrane and cytosolic proteins, and exist in alternatively spliced isoforms. They are highly enriched in postsynaptic density (PSD) where they interact with the cytoskeleton and with postsynaptic membrane receptors including NMDA and glutamate receptors. They are crucial in the construction and organization of the PSD and dendritic spines of excitatory synapses. There are three members of this family (Shank1, Shank2, Shank3) which show distinct and cell-type specific patterns of expression. Shank1 is brain-specific; Shank2 is found in neurons, glia, endocrine cells, liver, and kidney; Shank3 is widely expressed. The SH3 domain of Shank binds GRIP, a scaffold protein that binds AMPA receptors and Eph receptors/ligands. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212857 cd11924, SH3_Vinexin_2, Second Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 41.5 bits (97), Expect = 3e-06
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG--RVGYFPSNYV 75
          V  Y FK     EL  + G  + +I   ++NW++G+  G  R G FP++YV
Sbjct: 4  VAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYV 54

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212905 cd11972, SH3_Abi2, Src homology 3 domain of Abl Interactor 2

 Score = 41.5 bits (97), Expect = 3e-06
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          V +Y++     DEL  + G  + VI  +D  W++G   G  G FP NYV
Sbjct: 6  VAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYV 54

Abi2 is highly expressed in the brain and eye. It regulates actin cytoskeletal reorganization at adherens junctions and dendritic spines, which is important in cell morphogenesis, migration, and cognitive function. Mice deficient with Abi2 show defects in orientation and migration of lens fibers, neuronal migration, dendritic spine morphology, as well as deficits in learning and memory. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212854 cd11921, SH3_Vinexin_1, First Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 41.1 bits (96), Expect = 5e-06
 Identities = 19/46 (41%), Positives = 30/46 (65%)

Query: 30 YNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          ++F+++   EL L+ G  V +    D+NW +G+  GRVG FP+NYV
Sbjct: 7  FDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRVGIFPANYV 52

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212949 cd12016, SH3_Tks_2, Second Src homology 3 domain of Tyrosine kinase substrate (Tks) proteins

 Score = 40.9 bits (96), Expect = 6e-06
 Identities = 15/52 (28%), Positives = 28/52 (53%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIK 77
          ++    +K+ + DE+  + G  V VI  +   WWK +  G+ G+ P+ Y+ K
Sbjct: 3  YITTQAYKAENEDEIGFETGVVVEVIQKNLDGWWKIRYQGKEGWAPATYLKK 54

Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Vertebrates contain two Tks proteins, Tks4 (Tyr kinase substrate with four SH3 domains) and Tks5 (Tyr kinase substrate with five SH3 domains), which display partially overlapping but non-redundant functions. Both associate with the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. Tks5 interacts with N-WASP and Nck, while Tks4 is essential for the localization of MT1-MMP (membrane-type 1 matrix metalloproteinase) to invadopodia. Tks proteins contain an N-terminal Phox homology (PX) domain and four or five SH3 domains. This model characterizes the second SH3 domain of Tks proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212855 cd11922, SH3_Sorbs1_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin

 Score = 41.1 bits (96), Expect = 6e-06
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG--RVGYFPSNYV 75
          +  +NF      E+  + G ++T++   D+NW++G+  G  R G FP  YV
Sbjct: 4  IAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYV 54

Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl associated protein). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It binds Cbl and plays a major role in regulating the insulin signaling pathway by enhancing insulin-induced phosphorylation of Cbl. Sorbs1, like vinexin, localizes at cell-ECM and cell-cell adhesion sites where it binds vinculin, paxillin, and afadin. It may function in the control of cell motility. Other interaction partners of Sorbs1 include c-Abl, Sos, flotillin, Grb4, ataxin-7, filamin C, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212931 cd11998, SH3_PACSIN1-2, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1) and PACSIN 2

 Score = 41.1 bits (96), Expect = 6e-06
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSD-QNWWKGKC-MGRVGYFPSNYV 75
          LY++  +  DEL  K G ++T ++  D Q W KG+   G+VG +P+NYV
Sbjct: 6  LYDYDGQEQDELSFKAGDELTKLEDEDEQGWCKGRLDSGQVGLYPANYV 54

PACSIN 1 or Syndapin I (Synaptic dynamin-associated protein I) is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropathology of Huntington's disease. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSINs act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212771 cd11837, SH3_Intersectin_2, Second Src homology 3 domain (or SH3B) of Intersectin

 Score = 40.4 bits (95), Expect = 8e-06
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSNYV 75
          LY ++++  + L    G  +TV++  +  WW G+   G  G+FP +YV
Sbjct: 5  LYPWRAKKENHLSFAKGDIITVLEQQEM-WWFGELEGGEEGWFPKSYV 51

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The second SH3 domain (or SH3B) of ITSN1 has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212944 cd12011, SH3_SLAP2, Src homology 3 domain of Src-Like Adaptor Protein 2

 Score = 40.5 bits (95), Expect = 8e-06
 Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWK--GKCMGRVGYFPSNYVIKV 78
           V L NF S    EL ++ G ++T++ + D +WWK      GR  Y PSNYV KV
Sbjct: 2  AVALCNFPSGGPTELSIRMGEQLTIL-SEDGDWWKVSSAVTGRECYIPSNYVAKV 55

SLAP2 plays a role in c-Cbl-dependent regulation of CSF1R, a tyrosine kinase important for myeloid cell growth and differentiation. It has been shown to interact with CSF1R, c-Cbl, LAT, CD247, and Zap70. SLAPs are adaptor proteins with limited similarity to Src family tyrosine kinases. They contain an N-terminal SH3 domain followed by an SH2 domain, and a unique C-terminal sequence. They function in regulating the signaling, ubiquitination, and trafficking of T-cell receptor (TCR) and B-cell receptor (BCR) components. The SH3 domain of SLAP forms a complex with v-Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212755 cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing proteins

 Score = 40.4 bits (95), Expect = 8e-06
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG---RVGYFPSNY 74
          LY+ ++ + DEL    G  + V    D  WW+G   G   R G FP ++
Sbjct: 5  LYDCQADNDDELTFSEGEIIVVTGEEDDEWWEGHIEGDPSRRGVFPVSF 53

ASAPs are Arf GTPase activating proteins (GAPs) and they function in regulating cell growth, migration, and invasion. They contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3, but some ASAP3 proteins do not seem to harbor a C-terminal SH3 domain. ASAP1 and ASAP2 show GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but are able to mediate Arf6 signaling by binding stably to GTP-Arf6. ASAP3 is an Arf6-specific GAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212721 cd11787, SH3_SH3RF_2, Second Src Homology 3 domain of SH3 domain containing ring finger proteins

 Score = 40.4 bits (95), Expect = 8e-06
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 29 LYNFKSRHADELD---LKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNY 74
          LY+F+ +  DE D    K G  +TVI   D+NW +G+   ++G FP ++
Sbjct: 5  LYDFEMKDEDEKDCLTFKKGDVITVIRRVDENWAEGRLGDKIGIFPISF 53

This model represents the second SH3 domain of SH3RF1 (or POSH), SH3RF2 (or POSHER), SH3RF3 (POSH2), and similar domains. Members of this family are scaffold proteins that function as E3 ubiquitin-protein ligases. They all contain an N-terminal RING finger domain and multiple SH3 domains; SH3RF1 and SH3RF3 have four SH3 domains while SH3RF2 has three. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3RF2 acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212697 cd11763, SH3_SNX9_like, Src Homology 3 domain of Sorting Nexin 9 and similar proteins

 Score = 40.4 bits (95), Expect = 8e-06
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQN-WWKGK-CMGRVGYFPSNYV 75
           LY+F S+ + EL L+ G  +T+      + W +G+   G VG FPS+YV
Sbjct: 4  ALYDFDSQPSGELSLRAGEVLTITRQDVGDGWLEGRNSRGEVGLFPSSYV 53

Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. This subfamily consists of SH3 domain containing SNXs including SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212709 cd11775, SH3_Sla1p_3, Third Src Homology 3 domain of the fungal endocytic adaptor protein Sla1p

 Score = 40.4 bits (95), Expect = 9e-06
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVI-DTSDQNWWKGK--CMGRVGYFPSNYV 75
           VLY+F ++  DEL +K G  V ++ D   ++WW  +    G+ G  P++Y+
Sbjct: 4  KVLYDFDAQSDDELTVKEGDVVYILDDKKSKDWWMVENVSTGKEGVVPASYI 55

Sla1p facilitates endocytosis by playing a role as an adaptor protein in coupling components of the actin cytoskeleton to the endocytic machinery. It interacts with Abp1p, Las17p and Pan1p, which are activator proteins of actin-related protein 2/3 (Arp2/3). Sla1p contains multiple domains including three SH3 domains, a SAM (sterile alpha motif) domain, and a Sla1 homology domain 1 (SHD1), which binds to the NPFXD motif that is found in many integral membrane proteins such as the Golgi-localized Arf-binding protein Lsb5p and the P4-ATPases, Drs2p and Dnf1p. The third SH3 domain of Sla1p can bind ubiquitin while retaining the ability to bind proline-rich ligands; monoubiquitination of target proteins signals internalization and sorting through the endocytic pathway. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212803 cd11870, SH3_p67phox-like_C, C-terminal Src Homology 3 domain of the p67phox subunit of NADPH oxidase and similar proteins

 Score = 40.2 bits (94), Expect = 1e-05
 Identities = 14/49 (28%), Positives = 28/49 (57%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          V L+ ++++  ++L  + G  + V+   ++ W +G   GRVG FP  +V
Sbjct: 3  VALHRYEAQGPEDLGFREGDTIDVLSEVNEAWLEGHSDGRVGIFPKCFV 51

This subfamily is composed of p67phox, NADPH oxidase activator 1 (Noxa1), and similar proteins. p67phox, also called Neutrophil cytosol factor 2 (NCF-2), and Noxa1 are homologs and are the cytosolic subunits of the phagocytic (Nox2) and nonphagocytic (Nox1) NADPH oxidase complexes, respectively. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox and Noxa1 play regulatory roles. p67phox contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. Noxa1 has a similar domain architecture except it is lacking the N-terminal SH3 domain. The TPR domain of both binds activated GTP-bound Rac, while the C-terminal SH3 domain of p67phox and Noxa1 binds the polyproline motif found at the C-terminus of p47phox and Noxo1, respectively. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212731 cd11797, SH3_DNMBP_N4, Fourth N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 40.1 bits (94), Expect = 1e-05
 Identities = 17/48 (35%), Positives = 28/48 (58%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNY 74
          V LY F++   +ELD + G ++ +I T +  W +G+  GR G FP  +
Sbjct: 3  VALYRFQALEPNELDFEVGDRIRIIATLEDGWLEGELKGRRGIFPHRF 50

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP bind the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212782 cd11848, SH3_SLAP-like, Src homology 3 domain of Src-Like Adaptor Proteins

 Score = 40.3 bits (94), Expect = 1e-05
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWK--GKCMGRVGYFPSNYVIKV 78
          V L ++ S    EL L+ G  +T++ + + +WWK   +  GR  Y PS +V KV
Sbjct: 3  VALGDYPSGGPAELSLRLGEPLTIV-SDEGDWWKVLSEVTGRESYIPSVHVAKV 55

SLAPs are adaptor proteins with limited similarity to Src family tyrosine kinases. They contain an N-terminal SH3 domain followed by an SH2 domain, and a unique C-terminal sequence. They function in regulating the signaling, ubiquitination, and trafficking of T-cell receptor (TCR) and B-cell receptor (BCR) components. Vertebrates contain two SLAPs, named SLAP (or SLA1) and SLAP2 (or SLA2). SLAP has been shown to interact with the EphA receptor, EpoR, Lck, PDGFR, Syk, CD79a, among others, while SLAP2 interacts with CSF1R. Both SLAPs interact with c-Cbl, LAT, CD247, and Zap70. SLAP modulates TCR surface expression levels as well as surface and total BCR levels. As an adaptor to c-Cbl, SLAP increases the ubiquitination, intracellular retention, and targeted degradation of the BCR complex components. SLAP2 plays a role in c-Cbl-dependent regulation of CSF1R, a tyrosine kinase important for myeloid cell growth and differentiation. The SH3 domain of SLAP forms a complex with v-Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212734 cd11800, SH3_DNMBP_C2_like, Second C-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba, and similar domains

 Score = 40.0 bits (94), Expect = 1e-05
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQN----WWKGKCMGRVGYFPSNYVIK 77
          +  LY F++R   EL +  G  VTV++  D      WW  +  G+ GY PSNY+ K
Sbjct: 2  YYALYTFEARSPGELSVTEGQVVTVLEKHDLKGNPEWWLVEDRGKQGYVPSNYLAK 57

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. The C-terminal SH3 domains of DNMBP bind to N-WASP and Ena/VASP proteins, which are key regulatory proteins of the actin cytoskeleton. Also included in this subfamily is the second C-terminal SH3 domain of Rho guanine nucleotide exchange factor 37 (ARHGEF37), whose function is still unknown. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212851 cd11918, SH3_Vinexin_3, Third (or C-terminal) Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 40.3 bits (94), Expect = 1e-05
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKG--KCMGRVGYFPSNYVIKV 78
          +  +Y ++ ++ DEL+L+ G +V V+   D  W+ G  +   + G FP NYV  V
Sbjct: 4  YKAVYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPV 58

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212763 cd11829, SH3_GAS7, Src homology 3 domain of Growth Arrest Specific protein 7

 Score = 40.2 bits (94), Expect = 1e-05
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 29 LYNFK-SRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          LY F   +H   L  + G  + V+   D  WW+G+  G  G+FP++YV
Sbjct: 5  LYAFTGEQHQQGLSFEAGELIRVLQAPDGGWWEGEKDGLRGWFPASYV 52

GAS7 is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212819 cd11886, SH3_BOI, Src Homology 3 domain of fungal BOI-like proteins

 Score = 39.6 bits (93), Expect = 2e-05
 Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 5/55 (9%)

Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQ---NWWKGKCM--GRVGYFPSNY 74
          L +V+++F +R  DEL LKPG K+ +I+  ++    W+ G+ +  G  G FP  +
Sbjct: 1  LLIVIHDFNARSEDELTLKPGDKIELIEDDEEFGDGWYLGRNLRTGETGLFPVVF 55

This subfamily includes the Saccharomyces cerevisiae proteins BOI1 and BOI2, and similar proteins. They contain an N-terminal SH3 domain, a Sterile alpha motif (SAM), and a Pleckstrin homology (PH) domain at the C-terminus. BOI1 and BOI2 interact with the SH3 domain of Bem1p, a protein involved in bud formation. They promote polarized cell growth and participates in the NoCut signaling pathway, which is involved in the control of cytokinesis. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|212850 cd11917, SH3_Sorbs2_3, Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 40.0 bits (93), Expect = 2e-05
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKG--KCMGRVGYFPSNYV 75
          F  LYN+  R+ DEL+L+ G  + V++  D  W+ G  +     G FP NYV
Sbjct: 7  FQALYNYMPRNEDELELREGDVIDVMEKCDDGWFVGTSRRTKFFGTFPGNYV 58

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212950 cd12017, SH3_Tks_3, Third Src homology 3 domain of Tyrosine kinase substrate (Tks) proteins

 Score = 39.4 bits (92), Expect = 2e-05
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIK 77
          +  +  F++   D +  + G KV VID +   WW  K  G+ G+ PS+Y+ K
Sbjct: 2  YFTIGEFQATIQDGISFQKGQKVEVIDKNPSGWWYVKIDGKEGWAPSSYIEK 53

Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Vertebrates contain two Tks proteins, Tks4 (Tyr kinase substrate with four SH3 domains) and Tks5 (Tyr kinase substrate with five SH3 domains), which display partially overlapping but non-redundant functions. Both associate with the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. Tks5 interacts with N-WASP and Nck, while Tks4 is essential for the localization of MT1-MMP (membrane-type 1 matrix metalloproteinase) to invadopodia. Tks proteins contain an N-terminal Phox homology (PX) domain and four or five SH3 domains. This model characterizes the third SH3 domain of Tks proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212743 cd11809, SH3_srGAP, Src homology 3 domain of Slit-Robo GTPase Activating Proteins

 Score = 39.3 bits (92), Expect = 2e-05
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 30 YNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          +++  R   EL  K G  +T+      +WW+G+  G+ G  P  Y+
Sbjct: 6  FDYTGRSERELSFKKGDSLTLYRQVSDDWWRGQLNGQDGLVPHKYI 51

Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs (srGAP1-3), all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. A fourth member has also been reported (srGAP4, also called ARHGAP4). srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212772 cd11838, SH3_Intersectin_3, Third Src homology 3 domain (or SH3C) of Intersectin

 Score = 39.3 bits (92), Expect = 2e-05
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          ++ LY ++S    +L    G  + V    D  WW G    R G FPSNYV
Sbjct: 2  YIALYPYESNEPGDLTFNAGDVILVTKK-DGEWWTGTIGDRTGIFPSNYV 50

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The third SH3 domain (or SH3C) of ITSN1 has been shown to bind many proteins including dynamin1/2, CIN85, c-Cbl, SHIP2, Reps1, synaptojanin-1, and WNK, among others. The SH3C of ITSN2 has been shown to bind the K15 protein of Kaposi's sarcoma-associated herpesvirus. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212921 cd11988, SH3_Intersectin2_1, First Src homology 3 domain (or SH3A) of Intersectin-2

 Score = 39.1 bits (91), Expect = 3e-05
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTS--DQNWWKGKCMGRVGYFPSNYVIK 77
          LY F++R+ DE+    G  + V + +  +  W  G   G  G+FP NYV K
Sbjct: 7  LYPFEARNHDEMSFNAGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEK 57

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The first SH3 domain (or SH3A) of ITSN2 is expected to bind many protein partners, similar to ITSN1 which has been shown to bind Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212925 cd11992, SH3_Intersectin2_3, Third Src homology 3 domain (or SH3C) of Intersectin-2

 Score = 39.2 bits (91), Expect = 3e-05
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          ++ LY + S    +L    G ++ V    D  WW G    R G FPSNYV
Sbjct: 2  YIALYPYSSSEPGDLTFNEGEEILVTQ-KDGEWWTGSIEDRTGIFPSNYV 50

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The third SH3 domain (SH3C) of ITSN2 has been shown to bind the K15 protein of Kaposi's sarcoma-associated herpesvirus. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212789 cd11855, SH3_Sho1p, Src homology 3 domain of High osmolarity signaling protein Sho1p

 Score = 38.9 bits (91), Expect = 3e-05
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 29 LYNFKSRHAD--ELDLKPGYKVTVIDTSDQNWWKG-KCMGRVGYFPSNYVI 76
          LY + +   D  EL  + G  + V DTS   WW+  K  G  G  PSNY+ 
Sbjct: 5  LYPYDASPDDPNELSFEKGEILEVSDTSG-KWWQARKSNGETGICPSNYLQ 54

Sho1p (or Sho1), also called SSU81 (Suppressor of SUA8-1 mutation), is a yeast membrane protein that regulates adaptation to high salt conditions by activating the HOG (high-osmolarity glycerol) pathway. High salt concentrations lead to the localization to the membrane of the MAPKK Pbs2, which is then activated by the MAPKK Ste11 and in turn, activates the MAPK Hog1. Pbs2 is localized to the membrane though the interaction of its PxxP motif with the SH3 domain of Sho1p. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212712 cd11778, SH3_Bzz1_2, Second Src Homology 3 domain of Bzz1 and similar domains

 Score = 38.6 bits (90), Expect = 4e-05
 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQN-WWKGKCMGRVGYFPSNY 74
           LY+++++  DE+ ++ G ++ VI   D + W  G+  G  G FP++Y
Sbjct: 4  ALYDYEAQGDDEISIRVGDRIAVIRGDDGSGWTYGEINGVKGLFPTSY 51

Bzz1 (or Bzz1p) is a WASP/Las17-interacting protein involved in endocytosis and trafficking to the vacuole. It physically interacts with type I myosins and functions in the early steps of endocytosis. Together with other proteins, it induces membrane scission in yeast. Bzz1 contains an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), a central coiled-coil, and two C-terminal SH3 domains. This model represents the second C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212820 cd11887, SH3_Bbc1, Src Homology 3 domain of Bbc1 and similar domains

 Score = 38.9 bits (91), Expect = 4e-05
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 5/54 (9%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC---MGRV--GYFPSNYV 75
            LY ++S H D+L+   G  +TV +  D +W+ G+     G    G FP N+V
Sbjct: 5  KALYPYESDHEDDLNFDVGQLITVTEEEDADWYFGEYVDSNGNTKEGIFPKNFV 58

This subfamily is composed of Saccharomyces cerevisiae Bbc1p, also called Mti1p (Myosin tail region-interacting protein), and similar proteins. Bbc1p interacts with and regulates type I myosins in yeast, Myo3p and Myo5p, which are involved in actin cytoskeletal reorganization. It also binds and inhibits Las17, a WASp family protein that functions as an activator of the Arp2/3 complex. Bbc1p contains an N-terminal SH3 domain. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 60

>gnl|CDD|212887 cd11954, SH3_ASPP1, Src Homology 3 domain of Apoptosis Stimulating of p53 protein 1

 Score = 38.8 bits (90), Expect = 4e-05
 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 3/48 (6%)

Query: 29 LYNFKSRHADELDLKPGYKVTVI---DTSDQNWWKGKCMGRVGYFPSN 73
          L+++++++ADEL  + G  +T++   D S+  WW  +   + GY P N
Sbjct: 6  LWDYEAQNADELSFQEGDAITILRRKDDSETEWWWARLNDKEGYVPKN 53

ASPP1, like ASPP2, activates the apoptotic function of the p53 family of tumor suppressors (p53, p63, and p73). In addition, it functions in the cytoplasm to regulate the nuclear localization of the transcriptional cofactors YAP and TAZ by inihibiting their phosphorylation; YAP and TAZ are important regulators of cell expansion, differentiation, migration, and invasion. ASPP1 is downregulated in breast tumors expressing wild-type p53. It contains a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain at its C-terminal half. The SH3 domain and the ANK repeats of ASPP1 contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212696 cd11762, SH3_FCHSD_2, Second Src Homology 3 domain of FCH and double SH3 domains proteins

 Score = 38.5 bits (90), Expect = 5e-05
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQN----WWKGKCMGRVGYFPS 72
          LY+++++  +EL    G  + ++   D      WW+G+  GRVG FPS
Sbjct: 5  LYDYEAQSDEELSFPEGAIIRILRKDDNGVDDGWWEGEFNGRVGVFPS 52

This group is composed of FCH and double SH3 domains protein 1 (FCHSD1) and FCHSD2. These proteins have a common domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. They have only been characterized in silico and their functions remain unknown. This group also includes the insect protein, nervous wreck, which acts as a regulator of synaptic growth signaling. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212701 cd11767, SH3_Nck_3, Third Src Homology 3 domain of Nck adaptor proteins

 Score = 38.4 bits (90), Expect = 5e-05
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVID--TSDQNWWKGK-CMGRVGYFPSNYV 75
          V LY F   + +EL  + G ++ +I+    D +WWK +  +G  G  P NYV
Sbjct: 3  VALYPFTGENDEELSFEKGERLEIIEKPEDDPDWWKARNALGTTGLVPRNYV 54

This group contains the third SH3 domain of Nck, the first SH3 domain of Caenorhabditis elegans Ced-2 (Cell death abnormality protein 2), and similar domains. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The third SH3 domain of Nck appears to prefer ligands with a PxAPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. Ced-2 is a cell corpse engulfment protein that interacts with Ced-5 in a pathway that regulates the activation of Ced-10, a Rac small GTPase. Length = 56

>gnl|CDD|213007 cd12074, SH3_Tks5_1, First Src homology 3 domain of Tyrosine kinase substrate with five SH3 domains

 Score = 38.2 bits (88), Expect = 7e-05
 Identities = 14/50 (28%), Positives = 27/50 (54%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          +VV+ N++ +   E+ L+ G  V VI+ ++  WW        G+ P+ Y+
Sbjct: 2  YVVVSNYEKQENSEISLQAGEVVDVIEKNESGWWFVSTAEEQGWVPATYL 51

Tks5, also called SH3 and PX domain-containing protein 2A (SH3PXD2A) or Five SH (FISH), is a scaffolding protein and Src substrate that is localized in podosomes, which are electron-dense structures found in Src-transformed fibroblasts, osteoclasts, macrophages, and some invasive cancer cells. It binds and regulates some members of the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. It is required for podosome formation, degradation of the extracellular matrix, and cancer cell invasion. Tks5 contains an N-terminal Phox homology (PX) domain and five SH3 domains. This model characterizes the first SH3 domain of Tks5. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212727 cd11793, SH3_ephexin1_like, Src homology 3 domain of ephexin-1-like SH3 domain containing Rho guanine nucleotide exchange factors

 Score = 37.7 bits (88), Expect = 9e-05
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
            ++ + ++  DEL L+ G  V V+      W++G+ +  G  G+FPS+Y 
Sbjct: 3  QCVHAYTAQQPDELTLEEGDVVNVLRKMPDGWYEGERLRDGERGWFPSSYT 53

Members of this family contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and C-terminal SH3 domains. They include the Rho guanine nucleotide exchange factors ARHGEF5, ARHGEF16, ARHGEF19, ARHGEF26, ARHGEF27 (also called ephexin-1), and similar proteins, and are also called ephexins because they interact directly with ephrin A receptors. GEFs interact with Rho GTPases via their DH domains to catalyze nucleotide exchange by stabilizing the nucleotide-free GTPase intermediate. They play important roles in neuronal development. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212880 cd11947, SH3_GRAP2_N, N-terminal Src homology 3 domain of GRB2-related adaptor protein 2

 Score = 37.5 bits (87), Expect = 1e-04
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 30 YNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          ++F +   DEL  K G  + ++ +SD  W+K +  G  GY P N+V
Sbjct: 6  FDFTASGEDELSFKKGDVLKIL-SSDDIWFKAELNGEEGYVPKNFV 50

GRAP2 is also called GADS (GRB2-related adapter downstream of Shc), GrpL, GRB2L, Mona, or GRID (Grb2-related protein with insert domain). It is expressed specifically in the hematopoietic system. It plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. It also have roles in antigen-receptor and tyrosine kinase mediated signaling. GRAP2 is unique from other GRB2-like adaptor proteins in that it can be regulated by caspase cleavage. It contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The N-terminal SH3 domain of the related protein GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212907 cd11974, SH3_ASEF2, Src homology 3 domain of APC-Stimulated guanine nucleotide Exchange Factor 2

 Score = 37.4 bits (86), Expect = 1e-04
 Identities = 14/47 (29%), Positives = 28/47 (59%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          L++  +    EL  K G  + V++ S+++WW G+   R  +FP+++V
Sbjct: 6  LWDHVTMDDQELAFKAGDVIRVLEASNKDWWWGRNEDREAWFPASFV 52

ASEF2, also called Spermatogenesis-associated protein 13 (SPATA13), is a GEF that localizes with actin at the leading edge of cells and is important in cell migration and adhesion dynamics. GEFs activate small GTPases by exchanging bound GDP for free GTP. ASEF2 can activate both Rac 1 and Cdc42, but only Rac1 activation is necessary for increased cell migration and adhesion turnover. Together with APC (adenomatous polyposis coli) and Neurabin2, a scaffold protein that binds F-actin, it is involved in regulating HGF-induced cell migration. ASEF2 contains a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212860 cd11927, SH3_SH3RF1_1, First Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase

 Score = 37.2 bits (86), Expect = 1e-04
 Identities = 15/47 (31%), Positives = 27/47 (57%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          LYN++ +   +L    G  + +    D+NW+ G+  G  G+FP+N+V
Sbjct: 6  LYNYEGKEPGDLKFSKGDIIILRRQVDENWYHGEVNGIHGFFPTNFV 52

SH3RF1 is also called POSH (Plenty of SH3s) or SH3MD2 (SH3 multiple domains protein 2). It is a scaffold protein that acts as an E3 ubiquitin-protein ligase. It plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF1 also enhances the ubiquitination of ROMK1 potassium channel resulting in its increased endocytosis. It contains an N-terminal RING finger domain and four SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212784 cd11850, SH3_Abl, Src homology 3 domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 37.4 bits (87), Expect = 1e-04
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWW---KGKCMGRVGYFPSNYV 75
          LFV LY+F +   ++L +K G ++ V+  +    W   + K  G  G+ PSNY+
Sbjct: 1  LFVALYDFVASGENQLSIKKGEQLRVLGYNKNGEWCEAESKSTGGQGWVPSNYI 54

Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) PTK that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212836 cd11903, SH3_Nck2_3, Third Src Homology 3 domain of Nck2 adaptor protein

 Score = 37.3 bits (86), Expect = 2e-04
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDT--SDQNWWKGK-CMGRVGYFPSNYVI 76
          LY F S   +EL+ + G  + VI+   +D  WWK K   G+VG  P NYV+
Sbjct: 6  LYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNSRGQVGLVPKNYVV 56

Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds neuronal signaling proteins such as ephrinB and Disabled-1 (Dab-1) exclusively. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The third SH3 domain of Nck appears to prefer ligands with a PxAPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212792 cd11858, SH3_Myosin-I_fungi, Src homology 3 domain of Type I fungal Myosins

 Score = 37.0 bits (86), Expect = 2e-04
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRV--GYFPSNYV 75
          +  LY+F    A+EL LK    V ++   D  WW  K +     G+ P+ Y+
Sbjct: 2  YKALYDFAGSVANELSLKKDDIVYIVQKEDNGWWLAKKLDESKEGWVPAAYL 53

Type I myosins (myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Saccharomyces cerevisiae has two myosins-I, Myo3 and Myo5, which are involved in endocytosis and the polarization of the actin cytoskeleton. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212908 cd11975, SH3_ARHGEF9, Src homology 3 domain of the Rho guanine nucleotide exchange factor ARHGEF9

 Score = 37.4 bits (86), Expect = 2e-04
 Identities = 14/37 (37%), Positives = 24/37 (64%)

Query: 39 ELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          EL  K G  + V+D S+++WW G+     G+FP+++V
Sbjct: 20 ELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFV 56

ARHGEF9, also called PEM2 or collybistin, selectively activates Cdc42 by exchanging bound GDP for free GTP. It is highly expressed in the brain and it interacts with gephyrin, a postsynaptic protein associated with GABA and glycine receptors. Mutations in the ARHGEF9 gene cause X-linked mental retardation with associated features like seizures, hyper-anxiety, aggressive behavior, and sensory hyperarousal. ARHGEF9 contains a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212906 cd11973, SH3_ASEF, Src homology 3 domain of APC-Stimulated guanine nucleotide Exchange Factor

 Score = 37.3 bits (86), Expect = 2e-04
 Identities = 14/47 (29%), Positives = 28/47 (59%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          L++  +    EL  K G  + V+D +++ WW G+ +   G+FP+++V
Sbjct: 23 LWDHVTMDDQELGFKAGDVIEVMDATNKEWWWGRVLDSEGWFPASFV 69

ASEF, also called ARHGEF4, exists in an autoinhibited form and is activated upon binding of the tumor suppressor APC (adenomatous polyposis coli). GEFs activate small GTPases by exchanging bound GDP for free GTP. ASEF can activate Rac1 or Cdc42. Truncated ASEF, which is found in colorectal cancers, is constitutively active and has been shown to promote angiogenesis and cancer cell migration. ASEF contains a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. In its autoinhibited form, the SH3 domain of ASEF forms an extensive interface with the DH and PH domains, blocking the Rac binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 73

>gnl|CDD|212926 cd11993, SH3_Intersectin1_4, Fourth Src homology 3 domain (or SH3D) of Intersectin-1

 Score = 37.4 bits (86), Expect = 2e-04
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 5/58 (8%)

Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGR-----VGYFPSNYVIKVQP 80
          V+ ++ +   ++L L PG  + +   +   WW+G+   R     +G+FP+NYV  + P
Sbjct: 8  VIASYTATGPEQLTLAPGQLILIRKKNPGGWWEGELQARGKKRQIGWFPANYVKLLSP 65

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fourth SH3 domain (or SH3D) of ITSN1 has been shown to bind SHIP2, Numb, CdGAP, and N-WASP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 65

>gnl|CDD|212704 cd11770, SH3_Nephrocystin, Src Homology 3 domain of Nephrocystin (or Nephrocystin-1)

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYV 75
          L+  L +F++    +L  K G  + +I      WW  +   G  G  P  Y+
Sbjct: 1  LYEALSDFQAEQEGDLSFKKGEVLRIISKRADGWWLAENSKGNRGLVPKTYL 52

Nephrocystin contains an SH3 domain involved in signaling pathways that regulate cell adhesion and cytoskeletal organization. It is a protein that in humans is associated with juvenile nephronophthisis, an inherited kidney disease characterized by renal fibrosis that lead to chronic renal failure in children. It is localized in cell-cell junctions in renal duct cells, and is known to interact with Ack1, an activated Cdc42-associated kinase. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212815 cd11882, SH3_GRAF-like, Src Homology 3 domain of GTPase Regulator Associated with Focal adhesion kinase and similar proteins

 Score = 36.5 bits (85), Expect = 2e-04
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQ-NWWKGKCMGRVGYFPSNYV 75
          LY  K+    EL  +PG  +T +  SD+  W +G   GR G  P NYV
Sbjct: 5  LYACKAEDESELSFEPGQIITNVQPSDEPGWLEGTLNGRTGLIPENYV 52

This subfamily is composed of Rho GTPase activating proteins (GAPs) with similarity to GRAF. Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. Although vertebrates harbor four Rho GAPs in the GRAF subfamily including GRAF, GRAF2, GRAF3, and Oligophrenin-1 (OPHN1), only three are included in this model. OPHN1 contains the BAR, PH and GAP domains, but not the C-terminal SH3 domain. GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. GRAF influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase. GRAF2 regulates caspase-activated p21-activated protein kinase-2. The SH3 domain of GRAF and GRAF2 binds PKNbeta, a target of the small GTPase Rho. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 54

>gnl|CDD|212841 cd11908, SH3_ITK, Src Homology 3 domain of Interleukin-2-inducible T-cell Kinase

 Score = 36.9 bits (85), Expect = 2e-04
 Identities = 16/54 (29%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSNYVIK 77
          L + LY++++    EL L+   +  ++D+S+ +WW+ +   G  GY PS+Y+++
Sbjct: 2  LVIALYDYQTNDPQELALRYNEEYHLLDSSEIHWWRVQDKNGHEGYVPSSYLVE 55

ITK (also known as Tsk or Emt) is a cytoplasmic (or nonreceptor) tyr kinase containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. It also contains an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation, and the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. ITK is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, ITK plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, ITK is crucial for the development of T-helper(Th)2 effector responses. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212750 cd11816, SH3_Eve1_3, Third Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 36.6 bits (85), Expect = 2e-04
 Identities = 16/49 (32%), Positives = 27/49 (55%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          V  ++F+    DEL    G  +T+ +   + W KG+  G++G FP N+V
Sbjct: 3  VARFDFEGEQEDELSFSEGDVITLKEYVGEEWAKGELNGKIGIFPLNFV 51

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212888 cd11955, SH3_srGAP1-3, Src homology 3 domain of Slit-Robo GTPase Activating Proteins 1, 2, and 3

 Score = 36.5 bits (84), Expect = 2e-04
 Identities = 13/47 (27%), Positives = 24/47 (51%)

Query: 30 YNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVI 76
          +++  R A EL  K G  + +   +  +WW+G+  G  G  P  Y++
Sbjct: 6  FDYVGRSARELSFKKGASLLLYHRASDDWWEGRHNGIDGLVPHQYIV 52

srGAP1, also called Rho GTPase-Activating Protein 13 (ARHGAP13), is a Cdc42- and RhoA-specific GAP and is expressed later in the development of central nervous system tissues. srGAP2 is expressed in zones of neuronal differentiation. It plays a role in the regeneration of neurons and axons. srGAP3, also called MEGAP (MEntal disorder associated GTPase-Activating Protein), is a Rho GAP with activity towards Rac1 and Cdc42. It impacts cell migration by regulating actin and microtubule cytoskeletal dynamics. The association between srGAP3 haploinsufficiency and mental retardation is under debate. srGAPs are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212866 cd11933, SH3_Nebulin_C, C-terminal Src Homology 3 domain of Nebulin

 Score = 36.9 bits (85), Expect = 2e-04
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
          F  +Y++++   DE+  K G  +  + T D+ W  G     G+ G  P+NYV
Sbjct: 4  FRAMYDYRAADDDEVSFKDGDTIVNVQTIDEGWMYGTVQRTGKTGMLPANYV 55

Nebulin is a giant filamentous protein (600-900 kD) that is expressed abundantly in skeletal muscle. It binds to actin thin filaments and regulates its assembly and function. Nebulin was thought to be part of a molecular ruler complex that is critical in determining the lengths of actin thin filaments in skeletal muscle since its length, which varies due to alternative splicing, correlates with the length of thin filaments in various muscle types. Recent studies indicate that nebulin regulates thin filament length by stabilizing the filaments and preventing depolymerization. Mutations in nebulin can cause nemaline myopathy, characterized by muscle weakness which can be severe and can lead to neonatal lethality. Nebulin contains an N-terminal LIM domain, many nebulin repeats/super repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212840 cd11907, SH3_TXK, Src Homology 3 domain of TXK, also called Resting lymphocyte kinase (Rlk)

 Score = 36.5 bits (84), Expect = 3e-04
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYV 75
          LY+F  R    L LK   +  +++  D +WWK +   G  G  PSNYV
Sbjct: 6  LYDFLPREPSNLALKRAEEYLILEQYDPHWWKARDRYGNEGLIPSNYV 53

TXK is a cytoplasmic (or nonreceptor) tyr kinase containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. It also contains an N-terminal cysteine-rich region. Rlk is expressed in T-cells and mast cell lines, and is a key component of T-cell receptor (TCR) signaling. It is important in TCR-stimulated proliferation, IL-2 production and phospholipase C-gamma1 activation. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212729 cd11795, SH3_DNMBP_N2, Second N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 36.3 bits (84), Expect = 3e-04
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYV 75
          L V +  F S+    L+L+ G  V +  T+D  W +G+ C G  G+FPS+ V
Sbjct: 1  LVVCIEAFTSQEPGHLNLQRGDLVELTGTTDSGWLQGRSCWGSSGFFPSSCV 52

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP binds the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212986 cd12053, SH3_CD2AP_1, First Src Homology 3 domain (SH3A) of CD2-associated protein

 Score = 36.4 bits (84), Expect = 3e-04
 Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 26 FVVLYNFKSRHADELDLKPGYKV-TVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQ 79
          ++V Y++ + H DEL ++ G  +  V    ++ W +G+  GR G FP N+V +++
Sbjct: 2  YIVEYDYDAVHEDELTIRVGEIIRNVKKLEEEGWLEGELNGRRGMFPDNFVKEIK 56

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CD2AP. SH3A binds to the PXXXPR motif present in c-Cbl and the cytoplasmic domain of cell adhesion protein CD2. Its interaction with CD2 anchors CD2 at sites of cell contact. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212708 cd11774, SH3_Sla1p_2, Second Src Homology 3 domain of the fungal endocytic adaptor protein Sla1p

 Score = 36.3 bits (84), Expect = 3e-04
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGR-VGYFPSNYV 75
          LY++  +  +EL    G  + V D SD +W      G   G+ P+NY+
Sbjct: 5  LYDYDKQTEEELSFNEGDTLDVYDDSDSDWILVGFNGTQFGFVPANYI 52

Sla1p facilitates endocytosis by playing a role as an adaptor protein in coupling components of the actin cytoskeleton to the endocytic machinery. It interacts with Abp1p, Las17p and Pan1p, which are activator proteins of actin-related protein 2/3 (Arp2/3). Sla1p contains multiple domains including three SH3 domains, a SAM (sterile alpha motif) domain, and a Sla1 homology domain 1 (SHD1), which binds to the NPFXD motif that is found in many integral membrane proteins such as the Golgi-localized Arf-binding protein Lsb5p and the P4-ATPases, Drs2p and Dnf1p. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212865 cd11932, SH3_SH3RF2_2, Second Src Homology 3 domain of SH3 domain containing ring finger 2

 Score = 36.0 bits (83), Expect = 4e-04
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 29 LYNF------KSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          LYNF      +    D L  +    +TVI   D+NW +GK   +VG FP  +V
Sbjct: 5  LYNFDLKEKNREESKDCLKFQKDDIITVISRVDENWAEGKLGDQVGIFPILFV 57

SH3RF2 is also called POSHER (POSH-eliminating RING protein) or HEPP1 (heart protein phosphatase 1-binding protein). It acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1 (or POSH), a scaffold protein that is required for pro-apoptotic JNK activation. It may also play a role in cardiac functions together with protein phosphatase 1. SH3RF2 contains an N-terminal RING finger domain and three SH3 domains. This model represents the second SH3 domain, located C-terminal of the first SH3 domain at the N-terminal half, of SH3RF2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212741 cd11807, SH3_ASPP, Src homology 3 domain of Apoptosis Stimulating of p53 proteins (ASPP)

 Score = 35.8 bits (83), Expect = 5e-04
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 29 LYNFKSRHADELDLKPGYKVTVI---DTSDQNWWKGKCMGRVGYFPSNY 74
          L+++++ + DEL  + G ++TV+   D  +  WW  +   + GY P N 
Sbjct: 6  LFDYEAENGDELSFREGDELTVLRKGDDDETEWWWARLNDKEGYVPRNL 54

The ASPP family of proteins bind to important regulators of apoptosis (p53, Bcl-2, and RelA) and cell growth (APCL, PP1). They share similarity at their C-termini, where they harbor a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain. Vertebrates contain three members of the family: ASPP1, ASPP2, and iASPP. ASPP1 and ASPP2 activate the apoptotic function of the p53 family of tumor suppressors (p53, p63, and p73), while iASPP is an oncoprotein that specifically inhibits p53-induced apoptosis. The expression of ASPP proteins is altered in tumors; ASPP1 and ASPP2 are downregulated whereas iASPP is upregulated is some cancer types. ASPP proteins also bind and regulate protein phosphatase 1 (PP1), and this binding is competitive with p53 binding. The SH3 domain and the ANK repeats of ASPP contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212849 cd11916, SH3_Sorbs1_3, Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin

 Score = 35.7 bits (82), Expect = 5e-04
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKG--KCMGRVGYFPSNYV 75
          +  LY++  ++ DEL+L+ G  V V++  D  W+ G  +   + G FP NYV
Sbjct: 4  YQALYSYAPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYV 55

Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl associated protein). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It binds Cbl and plays a major role in regulating the insulin signaling pathway by enhancing insulin-induced phosphorylation of Cbl. Sorbs1, like vinexin, localizes at cell-ECM and cell-cell adhesion sites where it binds vinculin, paxillin, and afadin. It may function in the control of cell motility. Other interaction partners of Sorbs1 include c-Abl, Sos, flotillin, Grb4, ataxin-7, filamin C, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212889 cd11956, SH3_srGAP4, Src homology 3 domain of Slit-Robo GTPase Activating Protein 4

 Score = 35.6 bits (82), Expect = 5e-04
 Identities = 14/49 (28%), Positives = 24/49 (48%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          V  +++  R A EL  K G  + +   +  +WW+G+  G  G  P  Y+
Sbjct: 5  VACFDYTGRTAQELSFKRGDVLLLHSKASSDWWRGEHNGMRGLIPHKYI 53

srGAP4, also called ARHGAP4, is highly expressed in hematopoietic cells and may play a role in lymphocyte differentiation. It is able to stimulate the GTPase activity of Rac1, Cdc42, and RhoA. In the nervous system, srGAP4 has been detected in differentiating neurites and may be involved in axon and dendritic growth. srGAPs are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212747 cd11813, SH3_SGSM3, Src Homology 3 domain of Small G protein Signaling Modulator 3

 Score = 35.6 bits (82), Expect = 5e-04
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          L +F+    DEL  +    +T+I   D++ W G+  G  G+FP+ +V
Sbjct: 5  LLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFV 51

SGSM3 is also called Merlin-associated protein (MAP), RUN and SH3 domain-containing protein (RUSC3), RUN and TBC1 domain-containing protein 3 (RUTBC3), Rab GTPase-activating protein 5 (RabGAP5), or Rab GAP-like protein (RabGAPLP). It is expressed ubiquitously and functions as a regulator of small G protein RAP- and RAB-mediated neuronal signaling. It is involved in modulating NGF-mediated neurite outgrowth and differentiation. It also interacts with the tumor suppressor merlin and may play a role in the merlin-associated suppression of cell growth. SGSM3 contains TBC, SH3, and RUN domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212837 cd11904, SH3_Nck1_3, Third Src Homology 3 domain of Nck1 adaptor protein

 Score = 35.8 bits (82), Expect = 5e-04
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDT--SDQNWWK-GKCMGRVGYFPSNYV 75
          LY F S + +EL+ + G  + VI+   +D  WWK  K  G+VG  P NYV
Sbjct: 6  LYPFSSSNDEELNFEKGEVMDVIEKPENDPEWWKCRKANGQVGLVPKNYV 55

Nck1 (also called Nckalpha) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds and activates RasGAP, resulting in the downregulation of Ras. It is also involved in the signaling of endothilin-mediated inhibition of cell migration. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The third SH3 domain of Nck appears to prefer ligands with a PxAPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212828 cd11895, SH3_FCHSD1_2, Second Src Homology 3 domain of FCH and double SH3 domains protein 1

 Score = 35.7 bits (82), Expect = 6e-04
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 29 LYNFKSRHADELDLKPGYKVTVI----DTSDQNWWKGKCMGRVGYFPS 72
          LY++  +  +EL    G  + ++    D  D  +W+G+  GRVG FPS
Sbjct: 5  LYSYTGQSPEELSFPEGALIRLLPRAQDGVDDGFWRGEFGGRVGVFPS 52

FCHSD1 has a domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. It has only been characterized in silico and its function is unknown. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212943 cd12010, SH3_SLAP, Src homology 3 domain of Src-Like Adaptor Protein

 Score = 35.6 bits (82), Expect = 6e-04
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
           VL ++ S    E     G K+ V+ + +  WWK + +  GR  Y P   V KV
Sbjct: 3  AVLADYPSPDISEPIFHMGEKLRVL-SDEGGWWKVRSLQTGRENYIPGKCVAKV 55

SLAP (or SLA1) modulates TCR surface expression levels as well as surface and total BCR levels. As an adaptor to c-Cbl, SLAP increases the ubiquitination, intracellular retention, and targeted degradation of the BCR complex components. SLAP has been shown to interact with the EphA receptor, EpoR, Lck, PDGFR, Syk, CD79a, c-Cbl, LAT, CD247, and Zap70, among others. SLAPs are adaptor proteins with limited similarity to Src family tyrosine kinases. They contain an N-terminal SH3 domain followed by an SH2 domain, and a unique C-terminal sequence. The SH3 domain of SLAP forms a complex with v-Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212922 cd11989, SH3_Intersectin1_2, Second Src homology 3 domain (or SH3B) of Intersectin-1

 Score = 35.5 bits (81), Expect = 6e-04
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          LY ++++  + L+      +TV++  D  WW G+  G+ G+FP +YV
Sbjct: 5  LYPWRAKKDNHLNFNKNDVITVLEQQDM-WWFGEVQGQKGWFPKSYV 50

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The second SH3 domain (or SH3B) of ITSN1 has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212917 cd11984, SH3_Shank3, Src homology 3 domain of SH3 and multiple ankyrin repeat domains protein 3

 Score = 35.3 bits (81), Expect = 7e-04
 Identities = 14/50 (28%), Positives = 27/50 (54%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          F+ +  +  +   E+ L  G +V V+   +  +W+G   GR G+FP++ V
Sbjct: 3  FIAVKAYSPQGEGEIQLNRGERVKVLSIGEGGFWEGTVKGRTGWFPADCV 52

Shank3, also called ProSAP2 (Proline-rich synapse-associated protein 2), is widely expressed. It plays a role in the formation of dendritic spines and synapses. Haploinsufficiency of the Shank3 gene causes the 22q13 deletion/Phelan-McDermid syndrome, and variants of Shank3 have been implicated in autism spectrum disorder, schizophrenia, and intellectual disability. Shank proteins carry scaffolding functions through multiple sites of protein-protein interaction in its domain architecture, including ankyrin (ANK) repeats, a long proline rich region, as well as SH3, PDZ, and SAM domains. The SH3 domain of Shank binds GRIP, a scaffold protein that binds AMPA receptors and Eph receptors/ligands. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212780 cd11846, SH3_Srms, Src homology 3 domain of Srms Protein Tyrosine Kinase

 Score = 35.5 bits (82), Expect = 7e-04
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRV--GYFPSNYVIK 77
          LF  LY+F +R   EL ++ G K+ VI+      +  K  G    G  P++YV +
Sbjct: 1  LFTALYDFTARSTHELSVEQGDKLCVIEEEGDYIFARKLTGNPESGLVPASYVAQ 55

Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristoylation sites (Srms) is a cytoplasmic (or non-receptor) PTK with limited homology to Src kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). However, Srms lacks the N-terminal myristoylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212833 cd11900, SH3_Nck1_1, First Src Homology 3 domain of Nck1 adaptor protein

 Score = 35.5 bits (81), Expect = 7e-04
 Identities = 16/52 (30%), Positives = 33/52 (63%), Gaps = 2/52 (3%)

Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYV 75
          + V  +++ ++   ELD+K   ++ ++D S ++WW+ +  M + G+ PSNYV
Sbjct: 4  VVVAKFDYVAQQDQELDIKKNERLWLLDDS-KSWWRVRNAMNKTGFVPSNYV 54

Nck1 (also called Nckalpha) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds and activates RasGAP, resulting in the downregulation of Ras. It is also involved in the signaling of endothilin-mediated inhibition of cell migration. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The first SH3 domain of Nck1 binds the PxxDY sequence in the CD3e cytoplasmic tail; this binding inhibits phosphorylation by Src kinases, resulting in the downregulation of TCR surface expression. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|213010 cd12077, SH3_Tks5_2, Second Src homology 3 domain of Tyrosine kinase substrate with five SH3 domains

 Score = 35.4 bits (81), Expect = 8e-04
 Identities = 15/52 (28%), Positives = 30/52 (57%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIK 77
          +V +  + S+  DE+  + G  V VI  + + WW  + +G+ G+ P++Y+ K
Sbjct: 3  YVTVQPYTSQGKDEIGFEKGVTVEVIQKNLEGWWYIRYLGKEGWAPASYLKK 54

Tks5, also called SH3 and PX domain-containing protein 2A (SH3PXD2A) or Five SH (FISH), is a scaffolding protein and Src substrate that is localized in podosomes, which are electron-dense structures found in Src-transformed fibroblasts, osteoclasts, macrophages, and some invasive cancer cells. It binds and regulates some members of the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. It is required for podosome formation, degradation of the extracellular matrix, and cancer cell invasion. Tks5 contains an N-terminal Phox homology (PX) domain and five SH3 domains. This model characterizes the second SH3 domain of Tks5. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212980 cd12047, SH3_Noxa1_C, C-terminal Src Homology 3 domain of NADPH oxidase activator 1

 Score = 34.8 bits (80), Expect = 0.001
 Identities = 12/51 (23%), Positives = 29/51 (56%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIK 77
          V  +++ ++  ++L+   G  + ++   +Q W +G C GR+G FP  + ++
Sbjct: 3  VAQHDYSAQGPEDLEFSQGDTIDILSEVNQEWLEGHCDGRIGIFPKCFAVR 53

Noxa1 is a homolog of p67phox and is a cytosolic subunit of the nonphagocytic NADPH oxidase complex Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Noxa1 is co-expressed with Nox1 in colon, stomach, uterus, prostate, and vascular smooth muscle cells, consistent with its regulatory role. It does not interact with p40phox, unlike p67phox, making Nox1 activity independent of p40phox, unlike Nox2. Noxa1 contains TPR, PB1, and C-terminal SH3 domains, but lacks the central SH3 domain that is present in p67phox. The TPR domain binds activated GTP-bound Rac. The C-terminal SH3 domain binds the polyproline motif found at the C-terminus of Noxo1, a homolog of p47phox. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212886 cd11953, SH3_ASPP2, Src Homology 3 (SH3) domain of Apoptosis Stimulating of p53 protein 2

 Score = 34.9 bits (80), Expect = 0.001
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQN---WWKGKCMGRVGYFPSN 73
          L++++    DEL  K G  +T++   D++   WW  +   + GY P N
Sbjct: 6  LWDYEGESDDELSFKEGDCMTILRREDEDETEWWWARLNDKEGYVPRN 53

ASPP2 is the full length form of the previously-identified tumor supressor, p53-binding protein 2 (p53BP2). ASPP2 activates the apoptotic function of the p53 family of tumor suppressors (p53, p63, and p73). It plays a central role in regulating apoptosis and cell growth; ASPP2-deficient mice show postnatal death. Downregulated expression of ASPP2 is frequently found in breast tumors, lung cancer, and diffuse large B-cell lymphoma where it is correlated with a poor clinical outcome. ASPP2 contains a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain at its C-terminal half. The SH3 domain and the ANK repeats of ASPP2 contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212725 cd11791, SH3_UBASH3, Src homology 3 domain of Ubiquitin-associated and SH3 domain-containing proteins, also called TULA (T cell Ubiquitin LigAnd) family of proteins

 Score = 35.0 bits (81), Expect = 0.001
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 28 VLYNFKSRHADELDLKPGYKV----TVIDTSDQNW-----WKGKCMGRVGYFPSNYVIK 77
          VLY +  +  DEL+L PG  +      +D+S   W     W   C    G  P NY  K
Sbjct: 4  VLYPYTPQEEDELELVPGDYIYVSPEELDSSSDGWVEGTSWLTGC---SGLLPENYTEK 59

UBASH3 or TULA proteins are also referred to as Suppressor of T cell receptor Signaling (STS) proteins. They contain an N-terminal UBA domain, a central SH3 domain, and a C-terminal histidine phosphatase domain. They bind c-Cbl through the SH3 domain and to ubiquitin via UBA. In some vertebrates, there are two TULA family proteins, called UBASH3A (also called TULA or STS-2) and UBASH3B (also called TULA-2 or STS-1), which show partly overlapping as well as distinct functions. UBASH3B is widely expressed while UBASH3A is only found in lymphoid cells. UBASH3A facilitates apoptosis induced in T cells through its interaction with the apoptosis-inducing factor AIF. UBASH3B is an active phosphatase while UBASH3A is not. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212899 cd11966, SH3_ASAP2, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing protein 2

 Score = 34.5 bits (79), Expect = 0.001
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG---RVGYFPSNYV 75
          LYN  + + DEL    G  + V    D+ WW G   G   R G FP ++V
Sbjct: 5  LYNCVADNPDELTFSEGEIIIVDGEEDKEWWIGHIDGEPTRRGAFPVSFV 54

ASAP2 is also called DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. It mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and it binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212916 cd11983, SH3_Shank2, Src homology 3 domain of SH3 and multiple ankyrin repeat domains protein 2

 Score = 34.5 bits (79), Expect = 0.001
 Identities = 16/51 (31%), Positives = 29/51 (56%)

Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
           FVV+ +++ +   E+ L  G +V V+   +  +W+G   G VG+FP+  V
Sbjct: 2  HFVVVKSYQPQVEGEIPLHKGDRVKVLSIGEGGFWEGSARGHVGWFPAECV 52

Shank2, also called ProSAP1 (Proline-rich synapse-associated protein 1) or CortBP1 (Cortactin-binding protein 1), is found in neurons, glia, endocrine cells, liver, and kidney. It plays a role in regulating dendritic spine volume and branching and postsynaptic clustering. Mutations in the Shank2 gene are associated with autism spectrum disorder and mental retardation. Shank proteins carry scaffolding functions through multiple sites of protein-protein interaction in its domain architecture, including ankyrin (ANK) repeats, a long proline rich region, as well as SH3, PDZ, and SAM domains. The SH3 domain of Shank binds GRIP, a scaffold protein that binds AMPA receptors and Eph receptors/ligands. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212832 cd11899, SH3_Nck2_1, First Src Homology 3 domain of Nck2 adaptor protein

 Score = 34.7 bits (79), Expect = 0.001
 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYV 75
          + +  +++ ++   ELD+K   ++ ++D S + WW+ +    R GY PSNYV
Sbjct: 5  IVIAKWDYTAQQDQELDIKKNERLWLLDDS-KTWWRVRNAANRTGYVPSNYV 55

Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds neuronal signaling proteins such as ephrinB and Disabled-1 (Dab-1) exclusively. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The first SH3 domain of Nck2 binds the PxxDY sequence in the CD3e cytoplasmic tail; this binding inhibits phosphorylation by Src kinases, resulting in the downregulation of TCR surface expression. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212816 cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25/Cdc25 guanine nucleotide exchange factors

 Score = 34.6 bits (80), Expect = 0.001
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRV-----GYFPSNY 74
          V LY+F  +  ++L  K G  + V++     WW G  +        G+FPSNY
Sbjct: 3  VALYDFTPKSKNQLSFKAGDIIYVLNKDPSGWWDGVIISSSGKVKRGWFPSNY 55

This subfamily is composed of the Saccharomyces cerevisiae guanine nucleotide exchange factors (GEFs) Sdc25 and Cdc25, and similar proteins. These GEFs regulate Ras by stimulating the GDP/GTP exchange on Ras. Cdc25 is involved in the Ras/PKA pathway that plays an important role in the regulation of metabolism, stress responses, and proliferation, depending on available nutrients and conditions. Proteins in this subfamily contain an N-terminal SH3 domain as well as REM (Ras exchanger motif) and RasGEF domains at the C-terminus. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|212707 cd11773, SH3_Sla1p_1, First Src Homology 3 domain of the fungal endocytic adaptor protein Sla1p

 Score = 34.3 bits (79), Expect = 0.002
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 7/57 (12%)

Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-------GRVGYFPSNY 74
          ++  LY+++ +  DEL ++    + +++ SD +WWK K           VG  P+ Y
Sbjct: 1  VYKALYDYEPQTEDELTIQEDDILYLLEKSDDDWWKVKLKVNSSDDDEPVGLVPATY 57

Sla1p facilitates endocytosis by playing a role as an adaptor protein in coupling components of the actin cytoskeleton to the endocytic machinery. It interacts with Abp1p, Las17p and Pan1p, which are activator proteins of actin-related protein 2/3 (Arp2/3). Sla1p contains multiple domains including three SH3 domains, a SAM (sterile alpha motif) domain, and a Sla1 homology domain 1 (SHD1), which binds to the NPFXD motif that is found in many integral membrane proteins such as the Golgi-localized Arf-binding protein Lsb5p and the P4-ATPases, Drs2p and Dnf1p. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212955 cd12022, SH3_p47phox_2, Second or C-terminal Src homology 3 domain of the p47phox subunit of NADPH oxidase, also called Neutrophil Cytosolic Factor 1

 Score = 34.0 bits (78), Expect = 0.002
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 6/56 (10%)

Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWW---KGKCMGRVGYFPSNYVIK 77
          L++ +  + +   DEL L  G  + VI      WW   KG+     GYFPS Y+ K
Sbjct: 1  LYITIKAYTAVEEDELTLLEGEAIEVIHKLLDGWWVVRKGEVT---GYFPSMYLQK 53

p47phox, or NCF1, is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal Phox homology (PX) domain, tandem SH3 domains (N-SH3 and C-SH3), a polybasic/autoinhibitory region, and a C-terminal proline-rich region (PRR). This model characterizes the second SH3 domain (or C-SH3) of p47phox. In its inactive state, the tandem SH3 domains interact intramolecularly with the autoinhibitory region; upon activation, the tandem SH3 domains are exposed through a conformational change, resulting in their binding to the PRR of p22phox and the activation of NADPH oxidase. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212728 cd11794, SH3_DNMBP_N1, First N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 34.0 bits (78), Expect = 0.002
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
           +++F    ++EL L  G  + V+   D+ W  G   G  G FPS++V
Sbjct: 4  AIFDFCPSVSEELPLFAGDVIEVLKVVDEFWLLGTKEGVTGQFPSSFV 51

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP binds the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212827 cd11894, SH3_FCHSD2_2, Second Src Homology 3 domain of FCH and double SH3 domains protein 2

 Score = 33.8 bits (77), Expect = 0.003
 Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQN---WWKGKCMGRVGYFPS 72
          LY+++ +  DEL    G  + +++  +Q+   +W+G+  GR+G FPS
Sbjct: 5  LYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPS 51

FCHSD2 has a domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. It has only been characterized in silico and its function is unknown. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212798 cd11864, SH3_PEX13_eumet, Src Homology 3 domain of eumetazoan Peroxisomal biogenesis factor 13

 Score = 33.8 bits (78), Expect = 0.003
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQN----WWKGKCMG-RVGYFPSNYV 75
             Y+F +   DEL  + G K+ +     Q     W      G ++G  P+NYV
Sbjct: 3  RAEYDFVAESEDELSFRAGDKLRLAPKELQPRVRGWLLATVDGQKIGLVPANYV 56

PEX13 is a peroxin and is required for protein import into the peroxisomal matrix and membrane. It is an integral membrane protein that is essential for the localization of PEX14 and the import of proteins containing the peroxisome matrix targeting signals, PTS1 and PTS2. Mutations of the PEX13 gene in humans lead to a wide range of peroxisome biogenesis disorders (PBDs), the most severe of which is known as Zellweger syndrome (ZS), a severe multisystem disorder characterized by hypotonia, psychomotor retardation, and neuronal migration defects. PEX13 contains two transmembrane regions and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212984 cd12051, SH3_DOCK1_5_A, Src Homology 3 domain of Class A Dedicator of Cytokinesis proteins 1 and 5

 Score = 33.6 bits (77), Expect = 0.003
 Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 4/52 (7%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM---GRVGYFPSNYV 75
          V +YN+ +R  DEL L+ G  V +++T  + W++G  +    + G FP++Y+
Sbjct: 3  VAIYNYDARGPDELSLQIGDTVHILETY-EGWYRGYTLRKKSKKGIFPASYI 53

Dock1, also called Dock180, and Dock5 are class A DOCKs and are atypical guanine nucleotide exchange factors (GEFs) that lack the conventional Dbl homology (DH) domain. Dock1 interacts with the scaffold protein Elmo and the resulting complex functions upstream of Rac in many biological events including phagocytosis of apoptotic cells, cell migration and invasion. Dock5 functions upstream of Rac1 to regulate osteoclast function. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and DHR-2 (also called CZH2 or Docker). The DHR-1 domain binds phosphatidylinositol-3,4,5-triphosphate while DHR-2 contains the catalytic activity for Rac and/or Cdc42. Class A DOCKs also contain an SH3 domain at the N-terminal region and a PxxP motif at the C-terminus; they are specific GEFs for Rac. The SH3 domain of Dock1 binds to DHR-2 in an autoinhibitory manner; binding of Elmo to the SH3 domain of Dock1 exposes the DHR-2 domain and promotes GEF activity. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212898 cd11965, SH3_ASAP1, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing protein 1

 Score = 33.4 bits (76), Expect = 0.004
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG---RVGYFPSNYV 75
          +Y+ ++ + DEL    G  + V    DQ WW G   G   R G FP ++V
Sbjct: 5  IYDCQADNDDELTFVEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFV 54

ASAP1 is also called DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6. However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212863 cd11930, SH3_SH3RF1_2, Second Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase

 Score = 33.4 bits (76), Expect = 0.004
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 6/52 (11%)

Query: 29 LYNF--KSRHADELDLKPGYK---VTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          LY+F  K + AD+ D  P  K   +TVI   D+NW +G    ++G FP +YV
Sbjct: 5  LYDFEVKDKEADK-DCLPFAKDDILTVIRRVDENWAEGMLGDKIGIFPISYV 55

SH3RF1 is also called POSH (Plenty of SH3s) or SH3MD2 (SH3 multiple domains protein 2). It is a scaffold protein that acts as an E3 ubiquitin-protein ligase. It plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF1 also enhances the ubiquitination of ROMK1 potassium channel resulting in its increased endocytosis. It contains an N-terminal RING finger domain and four SH3 domains. This model represents the second SH3 domain, located C-terminal of the first SH3 domain at the N-terminal half, of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212802 cd11869, SH3_p40phox, Src Homology 3 domain of the p40phox subunit of NADPH oxidase

 Score = 33.2 bits (76), Expect = 0.004
 Identities = 13/47 (27%), Positives = 25/47 (53%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          L++F      EL+ K G  + ++   +++W +G   G  G FP ++V
Sbjct: 5  LFDFTGNSKLELNFKAGDVIFLLSRVNKDWLEGTVRGATGIFPLSFV 51

p40phox, also called Neutrophil cytosol factor 4 (NCF-4), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. It contains an N-terminal PX domain, a central SH3 domain, and a C-terminal PB1 domain that interacts with p67phox. The SH3 domain of p40phox binds to canonical polyproline and noncanonical motifs at the C-terminus of p47phox. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212875 cd11942, SH3_JIP2, Src homology 3 domain of JNK-interacting protein 2

 Score = 33.4 bits (76), Expect = 0.004
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNY 74
          ++ F  RH DEL+L     + V    D  W++G  M  G  G FP+ Y
Sbjct: 5  VFRFIPRHEDELELDVDDPLLVEAEEDDYWYRGYNMRTGERGIFPAFY 52

JNK-interacting protein 2 (JIP2) is also called Mitogen-activated protein kinase 8-interacting protein 2 (MAPK8IP2) or Islet-brain-2 (IB2). It is widely expressed in the brain, where it forms complexes with fibroblast growth factor homologous factors (FHFs), which facilitates activation of the p38delta MAPK. JIP2 is enriched in postsynaptic densities and may play a role in motor and cognitive function. In addition to a JNK binding domain, JIP2 also contains SH3 and Phosphotyrosine-binding (PTB) domains. The SH3 domain of the related protein JIP1 homodimerizes at the interface usually involved in proline-rich ligand recognition, despite the lack of this motif in the domain itself. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212874 cd11941, SH3_ARHGEF37_C2, Second C-terminal Src homology 3 domain of Rho guanine nucleotide exchange factor 37

 Score = 33.3 bits (76), Expect = 0.004
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQN----WWKGKCMGRVGYFPSNYVIK 77
          V  Y F +R   E+ L+ G  VTV++  D+     W   +  G+ GY PS+Y+ +
Sbjct: 3  VAAYPFTARSKHEVSLQAGQPVTVLEPHDKKGSPEWSLVEVNGQRGYVPSSYLAR 57

ARHGEF37 contains a RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. Its specific function is unknown. Its domain architecture is similar to the C-terminal half of DNMBP or Tuba, a cdc42-specific GEF that provides a functional link between dynamin, Rho GTPase signaling, and actin dynamics, and plays an important role in regulating cell junction configuration. GEFs activate small GTPases by exchanging bound GDP for free GTP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	139
KOG4226|consensus	379		99.88
KOG4225|consensus	489		99.83
KOG4348|consensus	627		99.81
KOG4226|consensus	379		99.78
KOG4225|consensus	489		99.78
KOG1029|consensus	1118		99.77
KOG4348|consensus	627		99.69
KOG1029|consensus	1118		99.68
PF14604	49	SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3	99.65
KOG4792|consensus	293		99.64
PF07653	55	SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3	99.55
PF14604	49	SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3	99.47
PF00018	48	SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Ho	99.45
KOG2070|consensus	661		99.36
smart00326	58	SH3 Src homology 3 domains. Src homology 3 (SH3) d	99.36
KOG0162|consensus	1106		99.33
KOG1118|consensus	366		99.32
cd00174	54	SH3 Src homology 3 domains; SH3 domains bind to pr	99.31
KOG2199|consensus	462		99.29
PF07653	55	SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3	99.27
KOG3632|consensus	1335		99.19
KOG2996|consensus	865		99.09
PF00018	48	SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Ho	99.04
smart00326	58	SH3 Src homology 3 domains. Src homology 3 (SH3) d	98.98
cd00174	54	SH3 Src homology 3 domains; SH3 domains bind to pr	98.94
KOG3601|consensus	222		98.84
KOG2199|consensus	462		98.83
KOG2996|consensus	865		98.81
KOG0515|consensus	752		98.79
KOG2856|consensus	472		98.76
KOG2070|consensus	661		98.76
KOG1264|consensus	1267		98.75
KOG2546|consensus	483		98.73
KOG1702|consensus	264		98.72
KOG1118|consensus	366		98.64
KOG1843|consensus	473		98.57
KOG2546|consensus	483		98.55
KOG4278|consensus	1157		98.55
KOG3601|consensus	222		98.53
KOG3875|consensus	362		98.45
KOG3655|consensus	484		98.42
KOG1264|consensus	1267		98.24
KOG3523|consensus	695		98.24
KOG2856|consensus	472		98.16
KOG3655|consensus	484		98.14
KOG0162|consensus	1106		98.11
KOG0197|consensus	468		98.1
KOG3875|consensus	362		97.9
KOG4792|consensus	293		97.9
KOG3557|consensus	721		97.86
KOG0515|consensus	752		97.82
KOG4429|consensus	421		97.78
KOG2222|consensus	848		97.76
KOG1702|consensus	264		97.69
KOG2528|consensus	490		97.64
KOG3775|consensus	482		97.62
KOG4773|consensus	386		97.62
KOG1451|consensus	812		97.62
KOG3523|consensus	695		97.47
KOG0609|consensus	542		97.29
KOG4575|consensus	874		97.24
KOG2528|consensus	490		97.19
KOG3771|consensus	460		97.15
KOG3557|consensus	721		96.9
PF08239	55	SH3_3: Bacterial SH3 domain; InterPro: IPR013247 S	96.76
KOG2222|consensus	848		96.72
KOG3725|consensus	375		96.72
KOG3632|consensus	1335		96.7
KOG3725|consensus	375		96.48
PF14603	89	hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.	96.36
PF14603	89	hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.	96.36
KOG4773|consensus	386		96.29
KOG3565|consensus	640		96.1
smart00287	63	SH3b Bacterial SH3 domain homologues.	96.08
PF08239	55	SH3_3: Bacterial SH3 domain; InterPro: IPR013247 S	95.82
KOG4429|consensus	421		95.75
KOG1843|consensus	473		95.7
KOG0199|consensus	1039		95.6
KOG3775|consensus	482		95.56
KOG4278|consensus	1157		95.26
KOG4575|consensus	874		94.71
PRK10884	206	SH3 domain-containing protein; Provisional	94.48
smart00287	63	SH3b Bacterial SH3 domain homologues.	94.4
KOG1451|consensus	812		94.1
KOG3812|consensus	475		93.96
PRK10884	206	SH3 domain-containing protein; Provisional	93.84
KOG3771|consensus	460		93.79
PF06347	55	SH3_4: Bacterial SH3 domain; InterPro: IPR010466 S	93.71
KOG0197|consensus	468		93.41
KOG3705|consensus	580		92.65
PF06347	55	SH3_4: Bacterial SH3 domain; InterPro: IPR010466 S	92.57
COG3103	205	SH3 domain protein [Signal transduction mechanisms	92.05
PRK13914	481	invasion associated secreted endopeptidase; Provis	91.11
KOG0609|consensus	542		90.6
COG3103	205	SH3 domain protein [Signal transduction mechanisms	90.43
KOG0040|consensus	2399		88.81
KOG3565|consensus	640		87.09
PRK13914	481	invasion associated secreted endopeptidase; Provis	86.01
smart00743	61	Agenet Tudor-like domain present in plant sequence	83.55

>KOG4226|consensus

Probab=99.88  E-value=5.1e-23  Score=147.75  Aligned_cols=113  Identities=27%  Similarity=0.519  Sum_probs=96.3

Q ss_pred             EEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCCC-----------------------
Q psy6450          26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE-----------------------   82 (139)
Q Consensus        26 ~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~-----------------------   82 (139)
                      +.+.|.|.++.++||+|.+|+.+.|.++..++||+|..+|+.||||++|+.+..+..                       
T Consensus       110 AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDGWWrG~~ng~VGWFPSNYv~E~~ds~~gd~~s~~~~~~~A~a~n~~~s~  189 (379)
T KOG4226|consen  110 AVVKFNYVAEREDELSLTKGTRVTVMEKSSDGWWRGSYNGQVGWFPSNYVTEEVDSAAGDSPSFLSLRKAASASNGQGSR  189 (379)
T ss_pred             eEEEEeeccccccccccccCcEEEEEEeccCcceecccCCeeccccccceehhccccccCCccceecchhhcccCCCCce
Confidence            788999999999999999999999999999999999999999999999998754331                       


Q ss_pred             --ccceeccccccccCCCceeeecCcEEEE--EcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 --RPLQVTHNLQIADGESGLSLLRDQIVIQ--IGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 --~~~~~~~~~~~~~~~~~l~~~~g~~v~~--~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                        ..+.+.+.|. +.++.||+|.+||.+-+  ....+..||++|+..|++|+||.|||+.+
T Consensus       190 vl~vVvaLYsFs-ssndeELsFeKGerleivd~Pe~DPdWwkarn~~G~vGLVPrNYv~vl  249 (379)
T KOG4226|consen  190 VLHVVVALYSFS-SSNDEELSFEKGERLEIVDKPENDPDWWKARNARGQVGLVPRNYVVVL  249 (379)
T ss_pred             EEEEEEEEeccc-CCChhhcccccCceeEeccCCCCCchHHhhcccCCccceeecceEEEe
Confidence              0234566664 77788999999998733  34566799999999999999999999864

>KOG4225|consensus

Probab=99.83  E-value=2.5e-20  Score=140.83  Aligned_cols=116  Identities=28%  Similarity=0.474  Sum_probs=100.6

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCC----CC-----------cccee
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP----GE-----------RPLQV   87 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~----~~-----------~~~~~   87 (139)
                      ...++|+|+|.++...||.|.+||+|.|+.+.+..|++|..+|+.|+||++||+.+..    ..           ....+
T Consensus       230 ~~~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEhhGr~GifP~sYvE~~~~~e~~qP~~~~P~q~~~~g~a~A  309 (489)
T KOG4225|consen  230 KRAARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGEHHGRVGIFPASYVEILTPREKAQPARPPPQQVLEQGEAIA  309 (489)
T ss_pred             cchhhheeccccCCccccccCCCCEEEEEeeccCceeeeeecceecceechheeecCcccccCcCCCCcccccccccccc
Confidence            3448999999999999999999999999999999999999999999999999998875    11           13566


Q ss_pred             ccccccccCCCceeeecCcEEEEEcceeCCEEEEEeC-CCeEEeeecCCEEeC
Q psy6450          88 THNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNG-ENRQGVCPLKYLQEV  139 (139)
Q Consensus        88 ~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~-~~~~G~~P~~~v~~~  139 (139)
                      .++|. +...-|+++.+|+.|.+....+..|+..+.. .+++|+||.+||+.+
T Consensus       310 ~y~F~-~~s~~Els~~kge~v~L~r~vd~nw~eG~i~g~~rqgifP~SyVev~  361 (489)
T KOG4225|consen  310 KYNFN-ADSPVELSLRKGERVTLTRQVDENWYEGKIPGTNRQGIFPASYVEVI  361 (489)
T ss_pred             cCCCC-CCCchhcccccCceEEEEEeccCceeeccccccccccccchhHhhhh
Confidence            77775 7788899999999999888888899988876 458899999999863

>KOG4348|consensus

Probab=99.81  E-value=1.3e-20  Score=142.59  Aligned_cols=115  Identities=28%  Similarity=0.492  Sum_probs=94.7

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCCCc-------------------
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGER-------------------   83 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~~-------------------   83 (139)
                      .+.|++.|.|.+++++||.|+.||+|.+++....|||.|..+|..|+||.||+..+.....                   
T Consensus       100 ~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~Lngk~GmFPsNFVkel~~~sde~~~aqd~~~S~stlagst  179 (627)
T KOG4348|consen  100 ARICVVTFAYSPQNDDELELKVGDIIELISEVEEGWWKGKLNGKVGMFPSNFVKELPTPSDESAAAQDPAASASTLAGST  179 (627)
T ss_pred             ceeEEEEEeecCCCCceeeeeeccHHHhhhHhhhhhhhceecCcccccchhhceecCCCCcchhhhcCcccchhhhcCcC
Confidence            4569999999999999999999999999999999999999999999999999987652110                   


Q ss_pred             --------------------------------------------------------------------------------
Q psy6450          84 --------------------------------------------------------------------------------   83 (139)
Q Consensus        84 --------------------------------------------------------------------------------   83 (139)
                                                                                                      
T Consensus       180 ~~~ps~s~~SE~a~gsv~qPKkI~g~gfgdIfk~~pVklr~rt~~sete~~p~~~~i~~~l~asT~s~d~tktd~~~~tK  259 (627)
T KOG4348|consen  180 ARTPSKSIGSEVAMGSVTQPKKIDGTGFGDIFKPAPVKLRLRTKFSETEKKPEKPFISSALSASTQSVDITKTDTAETTK  259 (627)
T ss_pred             CCCCcccccchhhcccccCcccccCCCcccccCCccceecccccccccccccccchhhhccCccccCccccccccccchh
Confidence                                                                                            


Q ss_pred             ---cceeccccccccCCCceeeecCcEEEE--EcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 ---PLQVTHNLQIADGESGLSLLRDQIVIQ--IGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ---~~~~~~~~~~~~~~~~l~~~~g~~v~~--~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                         ..++.+.| .+++++||.+++||+++.  ..+.+.|||.++ .+|+.|+||.|||+.|
T Consensus       260 tKeycrv~F~Y-e~qndDELt~KEgdil~lItK~cgdaGWweGE-LnGk~GvFPDNFv~lv  318 (627)
T KOG4348|consen  260 TKEYCRVKFVY-EPQNDDELTLKEGDILILITKNCGDAGWWEGE-LNGKKGVFPDNFVELV  318 (627)
T ss_pred             hhhheeeeeee-cCCCccceeeccccEEEEecccccccceeeee-ecCccccCCchhhhhc
Confidence               12344555 488899999999998844  466677999555 4559999999999764

>KOG4226|consensus

Probab=99.78  E-value=3e-19  Score=128.47  Aligned_cols=111  Identities=28%  Similarity=0.527  Sum_probs=93.0

Q ss_pred             EEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEecCCCC---------------------
Q psy6450          25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIKVQPGE---------------------   82 (139)
Q Consensus        25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~~~---------------------   82 (139)
                      .++|.|||.++.++||.+++.+.+-+++. ...||+.++ ..++|++|++||+.-....                     
T Consensus         6 ~vvak~dy~aq~~qeldikkner~~lldd-sk~wwrvrns~n~tgyvpsnyverkn~~~~~si~knlkd~~g~kt~~k~s   84 (379)
T KOG4226|consen    6 IVVAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNSANRTGYVPSNYVERKNSLKKGSIVKNLKDTLGLKTRRKTS   84 (379)
T ss_pred             EEEEEechhcccchhccccccceEEEEcC-CccceeeecccccCCcccchhhhcccchhhhHHHHhhhhccccccccCCC
Confidence            47899999999999999999999988875 458999999 6789999999998543110                     


Q ss_pred             -----------------------ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450          83 -----------------------RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQE  138 (139)
Q Consensus        83 -----------------------~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~  138 (139)
                                             .++.+.+.| .++.++||++.+|..|++.+...+|||++.. +|+.||||+|||++
T Consensus        85 ~~~~~~sp~~d~~~ppd~~~~~~t~AvVKf~Y-~a~~eDELsLtKGtrv~vmEKssDGWWrG~~-ng~VGWFPSNYv~E  161 (379)
T KOG4226|consen   85 ARDASPSPSTDAEYPPDRIYDLNTPAVVKFNY-VAEREDELSLTKGTRVTVMEKSSDGWWRGSY-NGQVGWFPSNYVTE  161 (379)
T ss_pred             ccccCCCCCccccCCcchhhhcCCceEEEEee-ccccccccccccCcEEEEEEeccCcceeccc-CCeeccccccceeh
Confidence                                   023345666 4888999999999999999999999998777 66999999999986

>KOG4225|consensus

Probab=99.78  E-value=2.4e-19  Score=135.57  Aligned_cols=126  Identities=24%  Similarity=0.424  Sum_probs=104.6

Q ss_pred             CCccccCCCCccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEecCCCCc-------
Q psy6450          13 LTQKAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIKVQPGER-------   83 (139)
Q Consensus        13 ~~~~~~~~~~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~~~~-------   83 (139)
                      ..++++..++...++|+|+|.+..+.||++++|+.|.++...+..|.+|.+  .++.|+||.+||+.+.....       
T Consensus       294 ~~~~P~q~~~~g~a~A~y~F~~~s~~Els~~kge~v~L~r~vd~nw~eG~i~g~~rqgifP~SyVev~~~~~~~~~~~~~  373 (489)
T KOG4225|consen  294 ARPPPQQVLEQGEAIAKYNFNADSPVELSLRKGERVTLTRQVDENWYEGKIPGTNRQGIFPASYVEVIKSPKLELPLDYP  373 (489)
T ss_pred             CCCCcccccccccccccCCCCCCCchhcccccCceEEEEEeccCceeeccccccccccccchhHhhhhhccccccccccC
Confidence            334555666666699999999999999999999999999999999999999  47899999999987652100       


Q ss_pred             ------------------------------------------------------------cceeccccccccCCCceeee
Q psy6450          84 ------------------------------------------------------------PLQVTHNLQIADGESGLSLL  103 (139)
Q Consensus        84 ------------------------------------------------------------~~~~~~~~~~~~~~~~l~~~  103 (139)
                                                                                  ..+|.+.|. +++++||-|.
T Consensus       374 ~~p~~p~~s~~~~~~~~~s~~~~~~~~~t~~~~q~~~n~~qepr~~~~~~~~~qt~~~~l~yrAly~Y~-pqnedeLEl~  452 (489)
T KOG4225|consen  374 DLPIPPRSSNELRPLSEDSMKNAWPQTHTQSSTQPPENFPQEPRVTEKNDAHSQTSSEPLKYRALYSYR-PQNEDELELR  452 (489)
T ss_pred             CCCCCcccchhhcccccchhhhcccccccccccCCCCCcccccccccccCcccCCCCCcccceeccccC-CCCchhheec
Confidence                                                                        236777884 8899999999


Q ss_pred             cCcEEEEEcceeCCEEEEE-eCCCeEEeeecCCEEeC
Q psy6450         104 RDQIVIQIGDEVDGMVMIR-NGENRQGVCPLKYLQEV  139 (139)
Q Consensus       104 ~g~~v~~~~~~~~g~~~~~-~~~~~~G~~P~~~v~~~  139 (139)
                      +||+|.+...+++|||.+. ...|+.|+||-|||+++
T Consensus       453 egDii~VmeKcddgWfvGts~rtg~fGtFPgnyV~~~  489 (489)
T KOG4225|consen  453 EGDIIDVMEKCDDGWFVGTSRRTGKFGTFPGNYVKRL  489 (489)
T ss_pred             cCCEEeeeecccCcceeccceecccccccCccccccC
Confidence            9999999999999999653 44568899999999874

>KOG1029|consensus

Probab=99.77  E-value=1.6e-19  Score=144.19  Aligned_cols=110  Identities=22%  Similarity=0.527  Sum_probs=96.2

Q ss_pred             EEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CC---eEEEEcCCcEEecCCCCc----------cceeccc
Q psy6450          26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MG---RVGYFPSNYVIKVQPGER----------PLQVTHN   90 (139)
Q Consensus        26 ~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g---~~G~~P~~~v~~~~~~~~----------~~~~~~~   90 (139)
                      +.++-+|.+..+..|++..|++|.|..+..+|||.|..  +|   +.||||++||..+.+...          .+.++|+
T Consensus       982 AqVia~yvAs~peQLsla~GqlIlIrkKn~sGWWeGELqarGkkrq~GWFPa~yVKvL~~~s~raTPa~~~v~qviamYd 1061 (1118)
T KOG1029|consen  982 AQVIADYVASGPEQLSLAPGQLILIRKKNASGWWEGELQARGKKRQIGWFPAEYVKVLEPGSGRATPATRPVCQVIAMYD 1061 (1118)
T ss_pred             hhhhhhhhccCchhccccCccEEEEEecCCCccchhhHhhcCCccccccccHHHhhhccCCCCcCCCCCCccceeEEeec
Confidence            56688999999999999999999999999999999987  44   469999999998876532          2347899


Q ss_pred             cccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEE
Q psy6450          91 LQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQ  137 (139)
Q Consensus        91 ~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~  137 (139)
                      |. +++++||+|..||+|.+..+....||.+... |+.|+||+|||+
T Consensus      1062 Y~-AqndDELsF~kgdiI~VlnkdepeWW~Ge~n-g~sGLFPSNYV~ 1106 (1118)
T KOG1029|consen 1062 YE-AQNDDELSFKKGDIINVLNKDEPEWWSGERN-GKSGLFPSNYVQ 1106 (1118)
T ss_pred             cc-cCCcccccccCCCEEEecCCCChhhhccccc-CccccCcccccc
Confidence            95 9999999999999999999999999976665 599999999995

>KOG4348|consensus

Probab=99.69  E-value=1.6e-18  Score=131.44  Aligned_cols=112  Identities=24%  Similarity=0.500  Sum_probs=94.4

Q ss_pred             EEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCC------------------------
Q psy6450          26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG------------------------   81 (139)
Q Consensus        26 ~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~------------------------   81 (139)
                      +++-|||.++.++||+++.|++|+-+.+.+.|||.|..+|+.|+||-++|.++...                        
T Consensus         4 ~ive~dy~a~hddelti~vgeii~nvkk~e~gw~egelngrrg~fpdnfV~eik~e~k~d~l~nk~~r~~l~q~~s~n~l   83 (627)
T KOG4348|consen    4 YIVEYDYDAVHDDELTIRVGEIIRNVKKLEEGWLEGELNGRRGQFPDNFVVEIKVEFKDDDLVNKLSRDSLVQMTSRNPL   83 (627)
T ss_pred             eeeecccccccCceeeEeHHHHHHhhhhhccceeeceeccccccCCchhhhhhhhhcccccccccccccchhhcccCCCc
Confidence            56789999999999999999999988888899999999999999999998766411                        


Q ss_pred             ----------------CccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          82 ----------------ERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        82 ----------------~~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                                      ....++.+.| ..++++||.|+-||+|-+..+..+|||.+.-. |++|.||+|||.++
T Consensus        84 ~~~q~v~rtn~~~q~~~r~c~v~f~Y-~pqndDELelkVGDiIeli~eVEeGWw~G~Ln-gk~GmFPsNFVkel  155 (627)
T KOG4348|consen   84 TVHQQVERTNPPPQPQARICVVTFAY-SPQNDDELELKVGDIIELISEVEEGWWKGKLN-GKVGMFPSNFVKEL  155 (627)
T ss_pred             cccCcccccCCCCCccceeEEEEEee-cCCCCceeeeeeccHHHhhhHhhhhhhhceec-Ccccccchhhceec
Confidence                            0023345666 58899999999999998888888999966655 59999999999874

>KOG1029|consensus

Probab=99.68  E-value=1.5e-17  Score=133.03  Aligned_cols=112  Identities=26%  Similarity=0.473  Sum_probs=87.6

Q ss_pred             EEEEEeeecCCCCCCcccCCCCEEEEEEC--CCCCeeEEEECCeEEEEcCCcEEecCCCCc-------------------
Q psy6450          25 LFVVLYNFKSRHADELDLKPGYKVTVIDT--SDQNWWKGKCMGRVGYFPSNYVIKVQPGER-------------------   83 (139)
Q Consensus        25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~--~~~~w~~~~~~g~~G~~P~~~v~~~~~~~~-------------------   83 (139)
                      .|+|+|.|.+.+.+|++|..||+|.|.+.  ..+||..|..+|..||||.+||+.+...+.                   
T Consensus       695 kyrAly~FeaRs~dEisf~pGDII~V~esq~aEPGWlaGel~gktGWFPenyvEki~~~e~p~~v~Pv~~l~~~~~psas  774 (1118)
T KOG1029|consen  695 KYRALYPFEARSHDEISFEPGDIIIVFESQAAEPGWLAGELRGKTGWFPENYVEKIPAVETPGGVPPVQNLPPTMTPSAS  774 (1118)
T ss_pred             EEeeecccccCCcccccccCCCEEEEehhccCCcccccceeccccCcCcHHHHhhcccCCCCCCCCchhcCCCCCCcccc
Confidence            48999999999999999999999988764  467999999999999999999997763320                   


Q ss_pred             ----------------------------------------cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEe
Q psy6450          84 ----------------------------------------PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRN  123 (139)
Q Consensus        84 ----------------------------------------~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~  123 (139)
                                                              ...+.+.+ .+.+++.|+|.+||+|.+.+. .+-||.+ +
T Consensus       775 ~nq~a~~ad~~~~~~n~~~~t~~aA~p~~tapg~~eve~lq~iA~y~w-rakke~dLsFskgd~I~Vlek-qemwW~G-~  851 (1118)
T KOG1029|consen  775 VNQIAVVADTKNESANAMGLTEGAAPPALTAPGQGEVEILQAIALYPW-RAKKENDLSFSKGDTITVLEK-QEMWWFG-E  851 (1118)
T ss_pred             cccceeecccccchhhccCCCCCCCCccccCCCchhhhhhhHHhhccc-cccccccccccCCCeeeeehh-ccceecc-c
Confidence                                                    01122333 255677899999999987766 2445545 6


Q ss_pred             CCCeEEeeecCCEEeC
Q psy6450         124 GENRQGVCPLKYLQEV  139 (139)
Q Consensus       124 ~~~~~G~~P~~~v~~~  139 (139)
                      ..|++||||.+||+++
T Consensus       852 v~g~~GwFPksYVk~~  867 (1118)
T KOG1029|consen  852 VAGEIGWFPKSYVKEV  867 (1118)
T ss_pred             ccCccCcCcHHhhhhc
Confidence            6679999999999853

>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A

Probab=99.65  E-value=3e-16  Score=86.97  Aligned_cols=49  Identities=45%  Similarity=0.986  Sum_probs=44.9

Q ss_pred             EEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEE
Q psy6450          28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVI   76 (139)
Q Consensus        28 al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~   76 (139)
                      |+|+|.++.++||+|++||+|.|+++.+++||+++++|+.|+||++||+
T Consensus         1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~   49 (49)
T PF14604_consen    1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRNTGRTGLFPANYVE   49 (49)
T ss_dssp             ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEETTEEEEEEGGGEE
T ss_pred             CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEECCEEEEECHHhCC
Confidence            6899999999999999999999999988999999999999999999985

...

>KOG4792|consensus

Probab=99.64  E-value=1.6e-16  Score=111.66  Aligned_cols=113  Identities=22%  Similarity=0.441  Sum_probs=88.6

Q ss_pred             EEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEecCCCCc--------------------
Q psy6450          25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIKVQPGER--------------------   83 (139)
Q Consensus        25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~~~~--------------------   83 (139)
                      +++++|+|.+...++|.|++|+++.|+++.+..||..++ .|+.|++|..||+.......                    
T Consensus       126 ~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns~Gk~GmIPvpYVe~~~~~~~~~~~~~~ga~e~si~q~~~g  205 (293)
T KOG4792|consen  126 YVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNSEGKRGMIPVPYVEKYRPASASVSALIGGASESSIPQSGGG  205 (293)
T ss_pred             heeeeeccCCCccccCCcccCcEEEEecCcHHHhhhhhccCCcccceechHHHhhhhhhcccccccCCcccccCCCCCCC
Confidence            478899999999999999999999999999999999999 89999999999986542110                    


Q ss_pred             ---------------------c--ceeccc-cccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450          84 ---------------------P--LQVTHN-LQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQE  138 (139)
Q Consensus        84 ---------------------~--~~~~~~-~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~  138 (139)
                                           +  +++... .-.+.....|.+..||+|.++....+|.|.. +.+|+.|.||.+||+-
T Consensus       206 ~e~~s~a~~s~~~~l~l~~~lPa~Arv~q~RVPnAYDkTaL~levGdiVkVTk~ninGqweg-ElnGk~G~fPfThvrf  283 (293)
T KOG4792|consen  206 AERFSSASTSSDTPLPLQQNLPAYARVIQKRVPNAYDKTALALEVGDIVKVTKKNINGQWEG-ELNGKIGHFPFTHVRF  283 (293)
T ss_pred             CCCCCCCCcccCCcCccccCCChheeeehhcCCCccChhhhhhhcCcEEEEEeeccCceeee-eecCccccccceeEEe
Confidence                                 0  001000 0012234459999999999999999999955 4566999999999974

>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.55  E-value=1.4e-14  Score=82.20  Aligned_cols=54  Identities=33%  Similarity=0.848  Sum_probs=48.0

Q ss_pred             EEEEEeeecCCCCCCcccCCCCEEEEE-ECCCCCeeEEEECCeEEEEcCCcEEec
Q psy6450          25 LFVVLYNFKSRHADELDLKPGYKVTVI-DTSDQNWWKGKCMGRVGYFPSNYVIKV   78 (139)
Q Consensus        25 ~~~al~~~~~~~~~eLs~~~gd~i~v~-~~~~~~w~~~~~~g~~G~~P~~~v~~~   78 (139)
                      +++|+++|.+..+++|+|++||+|.|+ +...++||.++.+|+.||||.+|++++
T Consensus         1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~~g~~G~~P~~~v~~~   55 (55)
T PF07653_consen    1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGENNGRRGWFPSSYVEEI   55 (55)
T ss_dssp             EEEESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEETTEEEEEEGGGEEEH
T ss_pred             CEEEeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEECCcEEEEcHHHEEEC
Confidence            478999999999999999999999999 777789999999999999999999863

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....

>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A

Probab=99.47  E-value=1.3e-13  Score=76.27  Aligned_cols=49  Identities=22%  Similarity=0.405  Sum_probs=41.2

Q ss_pred             eccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEE
Q psy6450          87 VTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQ  137 (139)
Q Consensus        87 ~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~  137 (139)
                      |.++|. ++.+++|+|.+||+|.+..+..+|||.+++ +|+.|+||++|||
T Consensus         1 Al~~y~-~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~-~g~~G~~P~~yV~   49 (49)
T PF14604_consen    1 ALYDYE-AQDPDELSFKKGDVITVLEKSDDGWWYGRN-TGRTGLFPANYVE   49 (49)
T ss_dssp             ESSCBC-SSSTTB-EB-TTEEEEEEEESSTSEEEEEE-TTEEEEEEGGGEE
T ss_pred             CCccCC-CCCcCEeeEcCCCEEEEEEeCCCCEEEEEE-CCEEEEECHHhCC
Confidence            457785 778889999999999888878899999998 7799999999997

...

>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.45  E-value=1.9e-13  Score=75.39  Aligned_cols=46  Identities=39%  Similarity=0.853  Sum_probs=42.1

Q ss_pred             EEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcC
Q psy6450          27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPS   72 (139)
Q Consensus        27 ~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~   72 (139)
                      +|+|+|.++.+++|+|++||.+.|++..+++||.++.  ++++|+||+
T Consensus         1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~   48 (48)
T PF00018_consen    1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS   48 (48)
T ss_dssp             EESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred             CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence            5899999999999999999999999998889999999  479999995

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....

>KOG2070|consensus

Probab=99.36  E-value=2.9e-13  Score=104.46  Aligned_cols=56  Identities=36%  Similarity=0.801  Sum_probs=53.3

Q ss_pred             EEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCC
Q psy6450          25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   80 (139)
                      .++|.|.|.+.+.|||+|.+||+|+|++..++|||.|+.+|++||||.+||..+..
T Consensus        19 vvrAkf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGTlng~TGWFPsnYV~eik~   74 (661)
T KOG2070|consen   19 VVRAKFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGTLNGRTGWFPSNYVREIKS   74 (661)
T ss_pred             EEEEEeecccCCCceeccccCCEEEEEEeccCcceeccccCccCccchHHHHHHhh
Confidence            48999999999999999999999999999999999999999999999999998763

>smart00326 SH3 Src homology 3 domains

Probab=99.36  E-value=5.2e-12  Score=71.37  Aligned_cols=54  Identities=43%  Similarity=0.866  Sum_probs=49.9

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEEC-CeEEEEcCCcEEe
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSNYVIK   77 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~-g~~G~~P~~~v~~   77 (139)
                      ..++|+++|.+..+++|+|++||.+.++....++||.+++. ++.|+||.+|++.
T Consensus         3 ~~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~   57 (58)
T smart00326        3 PQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVEE   57 (58)
T ss_pred             cEEEEeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEEE
Confidence            45899999999999999999999999999888899999995 9999999999875

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.

>KOG0162|consensus

Probab=99.33  E-value=1.5e-12  Score=104.50  Aligned_cols=54  Identities=33%  Similarity=0.765  Sum_probs=51.6

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEe
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIK   77 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~   77 (139)
                      ..|.|+|+|.++..+||+|++||+|.|+.++.+|||.|+.+|++||||.+|+.+
T Consensus      1052 p~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk~~~keG~~P~~Yv~~ 1105 (1106)
T KOG0162|consen 1052 PVCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGKLNGKEGLFPGNYVTE 1105 (1106)
T ss_pred             cceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhccCCcccccccccccc
Confidence            469999999999999999999999999999999999999999999999999975

>KOG1118|consensus

Probab=99.32  E-value=1.2e-12  Score=95.89  Aligned_cols=57  Identities=37%  Similarity=0.719  Sum_probs=53.8

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   80 (139)
                      ..|+|+|||++++..||.|+.||+|.++...+.+||.|...|..|+||.+||+.+.+
T Consensus       307 p~cralYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~~~g~sG~FPvnYv~vlvp  363 (366)
T KOG1118|consen  307 PCCRALYDFEPENEGELDFKEGDLITLTNQIDENWYEGEKHGESGMFPVNYVEVLVP  363 (366)
T ss_pred             hhheeeeccCCCCCCccCcccCceeeehhhcCcchhhheecCccCccccceeEEecc
Confidence            349999999999999999999999999999999999999999999999999998765

>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies

Probab=99.31  E-value=9.2e-12  Score=69.46  Aligned_cols=51  Identities=43%  Similarity=0.959  Sum_probs=47.2

Q ss_pred             EEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECC-eEEEEcCCcEE
Q psy6450          26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG-RVGYFPSNYVI   76 (139)
Q Consensus        26 ~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g-~~G~~P~~~v~   76 (139)
                      ++++|+|.+..+++|+|++||.+.+++...++||.+++.+ +.|+||.+|++
T Consensus         2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~   53 (54)
T cd00174           2 VRALYDYDARDPDELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVE   53 (54)
T ss_pred             EEEEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCc
Confidence            6899999999999999999999999998788999999955 99999999975

>KOG2199|consensus

Probab=99.29  E-value=6e-13  Score=100.30  Aligned_cols=58  Identities=40%  Similarity=0.744  Sum_probs=53.3

Q ss_pred             CccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecC
Q psy6450          22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQ   79 (139)
Q Consensus        22 ~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   79 (139)
                      ..+.++|||||.+..++||+|++||+|.|++..+..||.|.+.+..|+||.+||...-
T Consensus       214 ~~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~~~~~GlFPsnfVT~~l  271 (462)
T KOG2199|consen  214 VVRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGENHRGIGLFPSNFVTADL  271 (462)
T ss_pred             cchhhhhhhcccccCCCccceecCcEEEEcccCCcchhccccCCcccccchhhhhhhh
Confidence            3445999999999999999999999999999999999999999999999999997644

>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.27  E-value=9.7e-12  Score=70.39  Aligned_cols=53  Identities=21%  Similarity=0.408  Sum_probs=43.3

Q ss_pred             ceeccccccccCCCceeeecCcEEEEE-cceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          85 LQVTHNLQIADGESGLSLLRDQIVIQI-GDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        85 ~~~~~~~~~~~~~~~l~~~~g~~v~~~-~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      .++..+|. +..+++|++.+||+|.+. ....+|||+++. +|+.|+||.+||+.+
T Consensus         2 ~~a~~d~~-~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~-~g~~G~~P~~~v~~~   55 (55)
T PF07653_consen    2 YRAIFDYV-AEDPDELSFKKGDVIEVLGEKDDDGWWLGEN-NGRRGWFPSSYVEEI   55 (55)
T ss_dssp             EEESSSBE-SSSTTB-EB-TTEEEEEEEEECSTSEEEEEE-TTEEEEEEGGGEEEH
T ss_pred             EEEeEEEC-CCCCCceEEecCCEEEEEEeecCCCEEEEEE-CCcEEEEcHHHEEEC
Confidence            46778885 678889999999999776 667789999999 779999999999863

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....

>KOG3632|consensus

Probab=99.19  E-value=3.4e-11  Score=99.13  Aligned_cols=120  Identities=21%  Similarity=0.444  Sum_probs=92.4

Q ss_pred             CCCCccEEEEEeeecCC--------CCCCcccCCCCEEEEEEC-CCCCeeEEEECCeEEEEcCCcEEecCCCC-------
Q psy6450          19 RLLPTNLFVVLYNFKSR--------HADELDLKPGYKVTVIDT-SDQNWWKGKCMGRVGYFPSNYVIKVQPGE-------   82 (139)
Q Consensus        19 ~~~~~~~~~al~~~~~~--------~~~eLs~~~gd~i~v~~~-~~~~w~~~~~~g~~G~~P~~~v~~~~~~~-------   82 (139)
                      ..++...++|+|||.+-        ...||.|++|++|.|+.. +.++++.|..+|+.|+||.++|.++.-..       
T Consensus      1134 ~~lparifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~ngr~GlIPcNmvae~~vd~eq~~~r~ 1213 (1335)
T KOG3632|consen 1134 AALPARIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGELNGRRGLIPCNMVAEQPVDNEQTDRRW 1213 (1335)
T ss_pred             ccCcceeeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeecccccccccccccccccccCCcHHHHHHH
Confidence            45677789999999873        356799999999999864 45789999999999999999998765221       


Q ss_pred             -----c--------------------------cceecccccccc------CCCceeeecCcEEEEEcceeCCEEEEEeCC
Q psy6450          83 -----R--------------------------PLQVTHNLQIAD------GESGLSLLRDQIVIQIGDEVDGMVMIRNGE  125 (139)
Q Consensus        83 -----~--------------------------~~~~~~~~~~~~------~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~  125 (139)
                           +                          ...+.++|...+      .+.++.|..||||.+.+..+++-|..+..+
T Consensus      1214 rqG~lPsv~~~e~~~gs~~s~g~~k~vp~~p~~mvaa~dydpqeSSpg~dgeAelafraGdIitVfg~mdddgfyyGeln 1293 (1335)
T KOG3632|consen 1214 RQGLLPSVPTEEMRKGSAFSDGQQKMVPWPPRQMVAASDYDPQESSPGLDGEAELAFRAGDIITVFGKMDDDGFYYGELN 1293 (1335)
T ss_pred             HhccCCCCCchhhhcccccCCCCccccCCchhhhhhhhcCCcccCCCCcccceeeccccCCeEEeeccccCCcccccccC
Confidence                 0                          112344553211      145699999999988877777776678888


Q ss_pred             CeEEeeecCCEEe
Q psy6450         126 NRQGVCPLKYLQE  138 (139)
Q Consensus       126 ~~~G~~P~~~v~~  138 (139)
                      |++|++|++|++.
T Consensus      1294 gqkglvpsnfle~ 1306 (1335)
T KOG3632|consen 1294 GQKGLVPSNFLEA 1306 (1335)
T ss_pred             CccCccccccccC
Confidence            8999999999985

>KOG2996|consensus

Probab=99.09  E-value=5.5e-11  Score=93.72  Aligned_cols=49  Identities=24%  Similarity=0.215  Sum_probs=37.1

Q ss_pred             ccccccccCCCceeeecCcEEEEE--cceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450          88 THNLQIADGESGLSLLRDQIVIQI--GDEVDGMVMIRNGENRQGVCPLKYLQE  138 (139)
Q Consensus        88 ~~~~~~~~~~~~l~~~~g~~v~~~--~~~~~g~~~~~~~~~~~G~~P~~~v~~  138 (139)
                      .++| .++...+|++++||+|.+.  ...+.|||.++..+ +.||||++|||+
T Consensus       811 rYdf-~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevng-rvGwFPstYVee  861 (865)
T KOG2996|consen  811 RYDF-CARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVNG-RVGWFPSTYVEE  861 (865)
T ss_pred             cccc-CCCchhhcccccCCEEEEehhccccCceecceecC-cccccccccccc
Confidence            3444 2555667999999998443  34558999777665 999999999985

>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.04  E-value=6.4e-10  Score=61.12  Aligned_cols=47  Identities=21%  Similarity=0.368  Sum_probs=39.9

Q ss_pred             eeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCC-CeEEeeec
Q psy6450          86 QVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGE-NRQGVCPL  133 (139)
Q Consensus        86 ~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~-~~~G~~P~  133 (139)
                      +|.++|. +...++|++.+||.+.+.....+|||.++..+ ++.|+||+
T Consensus         1 ~Alydf~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~   48 (48)
T PF00018_consen    1 RALYDFD-AEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS   48 (48)
T ss_dssp             EESSCBE-TSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred             CCCeeeC-CCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence            4678886 77788999999999988888888999999887 59999996

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....

>smart00326 SH3 Src homology 3 domains

Probab=98.98  E-value=1.1e-09  Score=61.57  Aligned_cols=55  Identities=22%  Similarity=0.403  Sum_probs=46.4

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...+.++|. +...++|++.+||.+.+.....+|||.++..+++.|+||.+|++.+
T Consensus         4 ~~~a~~~~~-~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~~   58 (58)
T smart00326        4 QVRALYDYT-AQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVEEI   58 (58)
T ss_pred             EEEEeeeeC-CCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEEEC
Confidence            356777885 6777889999999997777768999999988789999999999864

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.

>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies

Probab=98.94  E-value=1.6e-09  Score=60.20  Aligned_cols=52  Identities=21%  Similarity=0.298  Sum_probs=44.0

Q ss_pred             eeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450          86 QVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQE  138 (139)
Q Consensus        86 ~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~  138 (139)
                      .+.++|. +..++++++.+||.+.+.....+|||.++...++.|+||.+||+.
T Consensus         3 ~a~~~~~-~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~   54 (54)
T cd00174           3 RALYDYD-ARDPDELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVEE   54 (54)
T ss_pred             EEEEeeC-CCCCCCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCcC
Confidence            4667775 666789999999999777777899999998888999999999863

>KOG3601|consensus

Probab=98.84  E-value=5.4e-10  Score=78.16  Aligned_cols=50  Identities=28%  Similarity=0.551  Sum_probs=42.9

Q ss_pred             EEEEeeecCCCCCCcccCCCCEEEEEECCC-CCeeEEEECCeEEEEcCCcE
Q psy6450          26 FVVLYNFKSRHADELDLKPGYKVTVIDTSD-QNWWKGKCMGRVGYFPSNYV   75 (139)
Q Consensus        26 ~~al~~~~~~~~~eLs~~~gd~i~v~~~~~-~~w~~~~~~g~~G~~P~~~v   75 (139)
                      ++++++|.+...+||+|.+|+.+.++...+ -.|......|..|++|.++.
T Consensus         3 a~a~n~f~a~i~dELsFlkg~~lk~l~~~d~~nw~~ael~g~~g~~P~Nai   53 (222)
T KOG3601|consen    3 AVAKNDFLAGIRDELSFLKGDNLKILNMEDDINWYKAELDGPEGFIPKNAI   53 (222)
T ss_pred             hhhhhhhhhcCcccceeecCCceEecchHHhhhhhhHhhcCccccCccccc
Confidence            567899999999999999999998887653 36888788888999998887

>KOG2199|consensus

Probab=98.83  E-value=8.6e-10  Score=83.50  Aligned_cols=55  Identities=16%  Similarity=0.243  Sum_probs=49.3

Q ss_pred             CccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450          82 ERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQE  138 (139)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~  138 (139)
                      .+++++.|+|. +..++||+|.+||||++.++....||.++... ..|+||+|||..
T Consensus       215 ~rkVRALYDFe-AaE~nELsFkaGdIItVLd~s~~~WWKG~~~~-~~GlFPsnfVT~  269 (462)
T KOG2199|consen  215 VRKVRALYDFE-AAEDNELSFKAGDIITVLDDSDPNWWKGENHR-GIGLFPSNFVTA  269 (462)
T ss_pred             chhhhhhhccc-ccCCCccceecCcEEEEcccCCcchhccccCC-cccccchhhhhh
Confidence            35789999996 77888999999999999999999999888777 899999999975

>KOG2996|consensus

Probab=98.81  E-value=3.1e-09  Score=84.02  Aligned_cols=53  Identities=49%  Similarity=0.877  Sum_probs=47.5

Q ss_pred             EEEEeeecCCCCCCcccCCCCEEEEEECC--CCCeeEEEECCeEEEEcCCcEEec
Q psy6450          26 FVVLYNFKSRHADELDLKPGYKVTVIDTS--DQNWWKGKCMGRVGYFPSNYVIKV   78 (139)
Q Consensus        26 ~~al~~~~~~~~~eLs~~~gd~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~   78 (139)
                      ++|-|||-+.+-.+|||+.||++.|+.+.  +.|||+|..+|+.||||++||++-
T Consensus       808 AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevngrvGwFPstYVee~  862 (865)
T KOG2996|consen  808 AVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVNGRVGWFPSTYVEED  862 (865)
T ss_pred             eeeccccCCCchhhcccccCCEEEEehhccccCceecceecCccccccccccccc
Confidence            67778888999999999999999998865  369999999999999999999864

>KOG0515|consensus

Probab=98.79  E-value=2.8e-09  Score=83.55  Aligned_cols=59  Identities=29%  Similarity=0.623  Sum_probs=51.6

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCC---CCeeEEEECCeEEEEcCCcEEecCCCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSD---QNWWKGKCMGRVGYFPSNYVIKVQPGE   82 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~---~~w~~~~~~g~~G~~P~~~v~~~~~~~   82 (139)
                      ..+-|+|||+++..+||+|+.||.++|+.+++   ..||+++++|++|+||.+|+..+....
T Consensus       684 G~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRnylgLyPriK  745 (752)
T KOG0515|consen  684 GVVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRNYLGLYPRIK  745 (752)
T ss_pred             ceeEEeecccccccccccccCCceeEEEecCCcchhhhhhHhhcCcccccchhhhhcCcccc
Confidence            34789999999999999999999999998754   479999999999999999997665443

>KOG2856|consensus

Probab=98.76  E-value=1.5e-09  Score=81.58  Aligned_cols=54  Identities=35%  Similarity=0.759  Sum_probs=47.9

Q ss_pred             EEEEEeeecCCCCCCcccCCCCEEEEEEC-CCCCeeEEEE-CCeEEEEcCCcEEec
Q psy6450          25 LFVVLYNFKSRHADELDLKPGYKVTVIDT-SDQNWWKGKC-MGRVGYFPSNYVIKV   78 (139)
Q Consensus        25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~-~~~~w~~~~~-~g~~G~~P~~~v~~~   78 (139)
                      .++|||||.++..+||+|++||.+..+.. +..||-.|+. .|+.|++|++||+.+
T Consensus       416 ~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~~  471 (472)
T KOG2856|consen  416 RVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVECI  471 (472)
T ss_pred             eEEeeeccCcccccchhhccccHhhhcCCccccccccccccCCcccccchhhhhcc
Confidence            48999999999999999999999987765 4569999999 599999999999754

>KOG2070|consensus

Probab=98.76  E-value=3.7e-09  Score=82.09  Aligned_cols=54  Identities=20%  Similarity=0.310  Sum_probs=45.8

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      .++|.+.|. +.+.+||+|.+||+|.+......|||.+.. +|++||||++||.++
T Consensus        19 vvrAkf~F~-gsNnDELsf~KgDvItVTq~eeGGWWEGTl-ng~TGWFPsnYV~ei   72 (661)
T KOG2070|consen   19 VVRAKFNFQ-GSNNDELSFSKGDVITVTQVEEGGWWEGTL-NGRTGWFPSNYVREI   72 (661)
T ss_pred             EEEEEeecc-cCCCceeccccCCEEEEEEeccCcceeccc-cCccCccchHHHHHH
Confidence            567888886 888999999999999888888899995554 459999999999653

>KOG1264|consensus

Probab=98.75  E-value=3e-09  Score=86.78  Aligned_cols=57  Identities=32%  Similarity=0.712  Sum_probs=52.6

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECC-eEEEEcCCcEEecCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG-RVGYFPSNYVIKVQP   80 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g-~~G~~P~~~v~~~~~   80 (139)
                      ..++|||+|.++.++||+|-++-+|..+++..++||+|..+| ..+|||++||+++.+
T Consensus       775 vt~kAL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei~~  832 (1267)
T KOG1264|consen  775 VTVKALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEIST  832 (1267)
T ss_pred             hhhhhhhccccCCcccccccccceeEeeeccCCceeecccccceeeeccHHHhhhhcc
Confidence            458999999999999999999999999999999999999975 489999999998875

>KOG2546|consensus

Probab=98.73  E-value=5.4e-09  Score=79.79  Aligned_cols=54  Identities=31%  Similarity=0.696  Sum_probs=51.5

Q ss_pred             EEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecC
Q psy6450          26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQ   79 (139)
Q Consensus        26 ~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   79 (139)
                      ++++|||.+..++||+|.+|-+|.|+.+.+++||+|...|.+|+||.+|++.+.
T Consensus       426 Vv~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV~~~VTglFpgnyve~~~  479 (483)
T KOG2546|consen  426 VVAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGVQDGVTGLFPGNYVEPLK  479 (483)
T ss_pred             HHhhcccccccccccccccccEEEEEEecCCcchhheecCcceeccCccccccc
Confidence            789999999999999999999999999999999999999999999999998764

>KOG1702|consensus

Probab=98.72  E-value=1.2e-08  Score=71.22  Aligned_cols=56  Identities=21%  Similarity=0.551  Sum_probs=50.8

Q ss_pred             CccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEe
Q psy6450          22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIK   77 (139)
Q Consensus        22 ~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~   77 (139)
                      +...++|+|||.++..++++|.-||.|.-.+..++||.+|+.  +|.+|+.|++|++.
T Consensus       206 ~gktyra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~  263 (264)
T KOG1702|consen  206 TGKTYRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEF  263 (264)
T ss_pred             CCccchhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheee
Confidence            345689999999999999999999999888888889999988  89999999999975

>KOG1118|consensus

Probab=98.64  E-value=1.1e-08  Score=75.28  Aligned_cols=55  Identities=9%  Similarity=0.199  Sum_probs=48.7

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      +..++.++|. +++++||.|.+||+|.+...-+++||+++..+ ++|+||.|||+.+
T Consensus       307 p~cralYdFe-penEgEL~fkeGDlI~l~~QIdenWyeG~~~g-~sG~FPvnYv~vl  361 (366)
T KOG1118|consen  307 PCCRALYDFE-PENEGELDFKEGDLITLTNQIDENWYEGEKHG-ESGMFPVNYVEVL  361 (366)
T ss_pred             hhheeeeccC-CCCCCccCcccCceeeehhhcCcchhhheecC-ccCccccceeEEe
Confidence            3567889996 99999999999999999999999999777666 8999999999974

>KOG1843|consensus

Probab=98.57  E-value=3.8e-08  Score=74.93  Aligned_cols=58  Identities=34%  Similarity=0.750  Sum_probs=51.7

Q ss_pred             CCCccEEEEEeeecCCCCCCcccCCCCEEEEEECCC--CCeeEEEECCeEEEEcCCcEEe
Q psy6450          20 LLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSD--QNWWKGKCMGRVGYFPSNYVIK   77 (139)
Q Consensus        20 ~~~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~--~~w~~~~~~g~~G~~P~~~v~~   77 (139)
                      .+..+.+.|+|+|.++.+.+|+|++||+|.++.+.+  ..||.++.++.+|+||++|+..
T Consensus       413 Sl~~n~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~~egifPanyv~~  472 (473)
T KOG1843|consen  413 SLEPNIATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRGNGYEGIFPANYVSL  472 (473)
T ss_pred             ccCcceeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhccccccccccceecc
Confidence            344667999999999999999999999999998765  4799999999999999999863

>KOG2546|consensus

Probab=98.55  E-value=1.4e-08  Score=77.55  Aligned_cols=65  Identities=18%  Similarity=0.325  Sum_probs=54.0

Q ss_pred             eEEEEcCCcEEecCCCCccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          66 RVGYFPSNYVIKVQPGERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        66 ~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..+|+|.+|++       .+.+.++|+ +..++||+|.+|.+|.+.++.++|||.+ ..++.+|+||-|||+.+
T Consensus       414 sp~w~p~syLE-------kVv~iydy~-~~KddeLsf~E~ailyv~kknddgw~Eg-V~~~VTglFpgnyve~~  478 (483)
T KOG2546|consen  414 SPAWVPTSYLE-------KVVAIYDYT-ADKDDELSFAEGAILYVLKKNDDGWYEG-VQDGVTGLFPGNYVEPL  478 (483)
T ss_pred             CcccccHHHHH-------HHHhhcccc-cccccccccccccEEEEEEecCCcchhh-eecCcceeccCcccccc
Confidence            45899999885       466778996 8999999999999998888899999954 44558999999999864

>KOG4278|consensus

Probab=98.55  E-value=7.9e-08  Score=77.57  Aligned_cols=100  Identities=24%  Similarity=0.488  Sum_probs=67.5

Q ss_pred             CCccEEEEEeeecCCCCCCcccCCCCEEEEEECC-CCCeeEEEECCeEEEEcCCcEEecCCCCccceeccccccccCCCc
Q psy6450          21 LPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTS-DQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQVTHNLQIADGESG   99 (139)
Q Consensus        21 ~~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~   99 (139)
                      ...+.++|||||.+.++..|++.+||.+.|+.-. ++.|-+.+....+||||++|+.++...+.    ..+|| +.    
T Consensus        88 ndpNLFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartKNGqGWVPSNyItPvNSLeK----hsWYH-Gp----  158 (1157)
T KOG4278|consen   88 NDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTKNGQGWVPSNYITPVNSLEK----HSWYH-GP----  158 (1157)
T ss_pred             CCCceeEeeeeeeccccceeeeecCceEEEeeecCCCcceeecccCCCccccccccccccchhh----ccccc-Cc----
Confidence            3456799999999999999999999999999755 45687777733349999999998775432    23554 11    


Q ss_pred             eeeecCcEEEEEcceeCCEEEEEeCCCeEEee
Q psy6450         100 LSLLRDQIVIQIGDEVDGMVMIRNGENRQGVC  131 (139)
Q Consensus       100 l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~  131 (139)
                      .+..+.+-+  ....++|.|+||++....|.+
T Consensus       159 vSRsaaEy~--LsSgInGSFLVRESEsSpgQ~  188 (1157)
T KOG4278|consen  159 VSRSAAEYI--LSSGINGSFLVRESESSPGQY  188 (1157)
T ss_pred             cccchhhhh--hhcCcccceEEeeccCCCcce
Confidence            111111111  223347777777776555543

>KOG3601|consensus

Probab=98.53  E-value=6.5e-08  Score=67.86  Aligned_cols=56  Identities=32%  Similarity=0.734  Sum_probs=51.8

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEec
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV   78 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   78 (139)
                      ..+..++|+|+++.+.++.|++|+.+.++...+..||.|+..|+.|+||++|+...
T Consensus       163 ~~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~lg~agiFpagyv~p~  218 (222)
T KOG3601|consen  163 NYYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSKLGRAGIFPAGYVAPS  218 (222)
T ss_pred             chhhhhcCCCCCCCchhhccccCCcceeecCCCcchhhccccCceeeecCcccccc
Confidence            44589999999999999999999999999999999999999999999999998654

>KOG3875|consensus

Probab=98.45  E-value=2.4e-08  Score=73.65  Aligned_cols=58  Identities=29%  Similarity=0.455  Sum_probs=49.0

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCC-----CCeeEEEE--CCeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSD-----QNWWKGKC--MGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~-----~~w~~~~~--~g~~G~~P~~~v~~~~~   80 (139)
                      ...++|+|||.+.++.||+|++||.+.|..+.+     +.||..+.  .+..|+||.+||+.+..
T Consensus       268 ~~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~r  332 (362)
T KOG3875|consen  268 HEFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGR  332 (362)
T ss_pred             HHHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhc
Confidence            345899999999999999999999999876533     46888776  56789999999998775

>KOG3655|consensus

Probab=98.42  E-value=1.2e-07  Score=73.38  Aligned_cols=54  Identities=35%  Similarity=0.786  Sum_probs=50.5

Q ss_pred             EEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEec
Q psy6450          25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIKV   78 (139)
Q Consensus        25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~   78 (139)
                      .++|+|+|++-.+.|++|..++.|.++...+.+||.|.. +|..|+||+|||+.+
T Consensus       429 ~A~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~li  483 (484)
T KOG3655|consen  429 TARALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVELI  483 (484)
T ss_pred             CccccccccccCCcccccCCccccccccccCCccccccCCCCCcCcccccccccC
Confidence            489999999999999999999999999999999999998 899999999999754

>KOG1264|consensus

Probab=98.24  E-value=5.4e-07  Score=74.07  Aligned_cols=56  Identities=20%  Similarity=0.278  Sum_probs=48.6

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...+|.++|. +..++||+|.++.+|....+...|||.+..++..+++||++|||+|
T Consensus       775 vt~kAL~~Yk-a~r~DELSFpk~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei  830 (1267)
T KOG1264|consen  775 VTVKALYDYK-AKRSDELSFPKGAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEI  830 (1267)
T ss_pred             hhhhhhhccc-cCCcccccccccceeEeeeccCCceeecccccceeeeccHHHhhhh
Confidence            3567888995 8889999999999998787777889988888878899999999975

>KOG3523|consensus

Probab=98.24  E-value=9.7e-08  Score=75.90  Aligned_cols=61  Identities=26%  Similarity=0.519  Sum_probs=55.0

Q ss_pred             CccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEecCCCC
Q psy6450          22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIKVQPGE   82 (139)
Q Consensus        22 ~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~~~   82 (139)
                      .+.++.++.+|.+..+++|++..+|++.|+++..+||++|..  +|..||||.+|++.|....
T Consensus       607 dcpQv~~~~sy~a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI~~~~  669 (695)
T KOG3523|consen  607 DCPQVQCVHSYKAKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEITNPH  669 (695)
T ss_pred             CCChhheeeccccCCCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHhcCHH
Confidence            345688999999999999999999999999999999999987  8899999999999887543

>KOG2856|consensus

Probab=98.16  E-value=3.6e-07  Score=68.99  Aligned_cols=56  Identities=14%  Similarity=0.246  Sum_probs=46.5

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEE-cceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQI-GDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~-~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      .++++.++|. ++..+||+|.+||.+... +....||..+|-..|+.|+||+||||-+
T Consensus       415 v~vraLYDY~-gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~~  471 (472)
T KOG2856|consen  415 VRVRALYDYA-GQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVECI  471 (472)
T ss_pred             eeEEeeeccC-cccccchhhccccHhhhcCCccccccccccccCCcccccchhhhhcc
Confidence            4678899995 777889999999988544 4445699999988889999999999853

>KOG3655|consensus

Probab=98.14  E-value=7.6e-07  Score=69.07  Aligned_cols=57  Identities=14%  Similarity=0.238  Sum_probs=50.1

Q ss_pred             CccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          82 ERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ....++.++|. +..+.++++..+++|+.+...++|||.+.--+|..|+||+|||+.+
T Consensus       427 ~q~A~A~~dyq-AAddtEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~li  483 (484)
T KOG3655|consen  427 PQTARALYDYQ-AADDTEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVELI  483 (484)
T ss_pred             CCCcccccccc-ccCCcccccCCccccccccccCCccccccCCCCCcCcccccccccC
Confidence            34577889997 5668899999999999999999999999989999999999999864

>KOG0162|consensus

Probab=98.11  E-value=1.6e-06  Score=70.60  Aligned_cols=55  Identities=15%  Similarity=0.263  Sum_probs=47.1

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      +...+.++|. ++..+||++.+||+|.+..++..|||..+.. |+.||||.+||+.+
T Consensus      1052 p~~~A~Y~y~-gq~~dEls~~~~diIei~~edpSGWw~gk~~-~keG~~P~~Yv~~~ 1106 (1106)
T KOG0162|consen 1052 PVCEALYDYP-GQDVDELSFKKGDIIEIMREDPSGWWLGKLN-GKEGLFPGNYVTEY 1106 (1106)
T ss_pred             cceeeeccCC-CCCcccccccCCCEEEEeccCCCcchhhccC-CccccccccccccC
Confidence            3567888994 8888999999999998888989999988854 49999999999863

>KOG0197|consensus

Probab=98.10  E-value=1.2e-06  Score=68.65  Aligned_cols=56  Identities=32%  Similarity=0.879  Sum_probs=49.7

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCE-EEEEECCCCCeeEEEE--CCeEEEEcCCcEEec
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYK-VTVIDTSDQNWWKGKC--MGRVGYFPSNYVIKV   78 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~-i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~   78 (139)
                      ...++|+|+|.+..+.+|+|.+||+ ..+++..+..||+.+.  .+..|++|.||+...
T Consensus        11 ~~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~   69 (468)
T KOG0197|consen   11 ETIVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARN   69 (468)
T ss_pred             cceEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeecc
Confidence            3469999999999999999999999 7777777789999877  688999999999875

>KOG3875|consensus

Probab=97.90  E-value=2.7e-06  Score=62.99  Aligned_cols=55  Identities=13%  Similarity=0.178  Sum_probs=41.1

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEc-----ceeCCEEEEEeC-CCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIG-----DEVDGMVMIRNG-ENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~-----~~~~g~~~~~~~-~~~~G~~P~~~v~~~  139 (139)
                      ..++.++|. ++++.|++|.+||++.+..     ..+..||.++.- ++.+|+||.|||+.|
T Consensus       270 ~arA~YdF~-a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi  330 (362)
T KOG3875|consen  270 FARALYDFV-ARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKII  330 (362)
T ss_pred             HHHHHhhhh-cCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhh
Confidence            467888994 7788999999999884432     222357777766 557799999999864

>KOG4792|consensus

Probab=97.90  E-value=2.7e-06  Score=60.60  Aligned_cols=53  Identities=17%  Similarity=0.381  Sum_probs=45.6

Q ss_pred             ceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450          85 LQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQE  138 (139)
Q Consensus        85 ~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~  138 (139)
                      .++.++|. +..+..|-|++||++.+.++..+-||..|++.|++|.+|..|||.
T Consensus       127 vr~~fdF~-G~deeDLPFkkGeiL~I~~K~eeqWW~Arns~Gk~GmIPvpYVe~  179 (293)
T KOG4792|consen  127 VRALFDFN-GNDEEDLPFKKGEILRIRDKPEEQWWNARNSEGKRGMIPVPYVEK  179 (293)
T ss_pred             eeeeeccC-CCccccCCcccCcEEEEecCcHHHhhhhhccCCcccceechHHHh
Confidence            44567774 666667999999999888888899999999999999999999984

>KOG3557|consensus

Probab=97.86  E-value=4.5e-06  Score=67.05  Aligned_cols=59  Identities=41%  Similarity=0.811  Sum_probs=51.7

Q ss_pred             CccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEecCCC
Q psy6450          22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        22 ~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~~   81 (139)
                      ...++.++|||.+.+..||+..+||++.|+.. ...||.+++ .|+.|++|.+.+..+...
T Consensus       499 ~~k~~~~~Ydf~arNs~ELsV~k~E~LEvl~d-~R~WW~~kn~~G~~GyvP~nIL~~~~~~  558 (721)
T KOG3557|consen  499 GKKWVLVLYDFQARNSSELSVKKGEVLEVLDD-GRKWWKVKNGHGRAGYVPSNILAPLQPE  558 (721)
T ss_pred             cceeeeeehhhhcccchhhhhhhhhhhhhhhc-cccceeccCccCCCCCcchhhhccCCCc
Confidence            34478999999999999999999999999885 358999999 789999999999877644

>KOG0515|consensus

Probab=97.82  E-value=5.2e-06  Score=65.65  Aligned_cols=52  Identities=19%  Similarity=0.148  Sum_probs=40.7

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcc---eeCCEEEEEeCCCeEEeeecCCEE
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGD---EVDGMVMIRNGENRQGVCPLKYLQ  137 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~---~~~g~~~~~~~~~~~G~~P~~~v~  137 (139)
                      .+.+.++|. ++.++||+|.+||-+.+.++   ....||+++..+ +.|+||.||+-
T Consensus       685 ~vYAlwdYe-aqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng-~eGyVPRnylg  739 (752)
T KOG0515|consen  685 VVYALWDYE-AQFEDELSFDEGDELTVIRRDDEVETEWWWARLNG-EEGYVPRNYLG  739 (752)
T ss_pred             eeEEeeccc-ccccccccccCCceeEEEecCCcchhhhhhHhhcC-cccccchhhhh
Confidence            455777885 99999999999997755443   334899999555 99999999973

>KOG4429|consensus

Probab=97.78  E-value=1.1e-05  Score=59.56  Aligned_cols=54  Identities=19%  Similarity=0.214  Sum_probs=49.4

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEe
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIK   77 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~   77 (139)
                      ..|.++|+|++..+++|...+|+++.+.+....+||.|+..|.-|-||+.+++.
T Consensus       364 ~lcdafYSfqarqddel~~e~gditif~Ekkeeg~~f~rl~gd~~hf~Aa~iEe  417 (421)
T KOG4429|consen  364 ILCDAFYSFQARQDDELGGEIGDITIFDEKKEEGPTFCRLLGDFEHFHAAEIEE  417 (421)
T ss_pred             HHhhhhhccccccccccCCcccceeeecCcccCCCceeeeccccCCCcHHHHHH
Confidence            348999999999999999999999988888889999999999989999988865

>KOG2222|consensus

Probab=97.76  E-value=3.5e-06  Score=66.05  Aligned_cols=56  Identities=27%  Similarity=0.529  Sum_probs=51.3

Q ss_pred             EEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCC
Q psy6450          25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   80 (139)
                      .++|+.||....++||.|++.|+|++++..+..-|-|..+|-+||||+.+|+.+..
T Consensus       550 rakal~df~r~dddelgfrkndiitiisekdehcwvgelnglrgwfpakfvellde  605 (848)
T KOG2222|consen  550 RAKALHDFAREDDDELGFRKNDIITIISEKDEHCWVGELNGLRGWFPAKFVELLDE  605 (848)
T ss_pred             HHHHHhhhhhccccccccccccEEEEeecCCcceeeeccccccccchHHHHHHHHh
Confidence            37889999999999999999999999998888999999999999999999976653

>KOG1702|consensus

Probab=97.69  E-value=6.3e-05  Score=52.89  Aligned_cols=56  Identities=16%  Similarity=0.281  Sum_probs=44.5

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEE-eCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIR-NGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~-~~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++| .++.+++.+|.-||-|+....-++||.... .-.|.+|.+|+||||-|
T Consensus       208 ktyra~ydy-saqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~v  264 (264)
T KOG1702|consen  208 KTYRAFYDY-SAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEFV  264 (264)
T ss_pred             ccchhhccC-cccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheeeC
Confidence            568899999 488889999999998876777778985433 33457999999999965

>KOG2528|consensus

Probab=97.64  E-value=1.6e-05  Score=61.49  Aligned_cols=55  Identities=25%  Similarity=0.512  Sum_probs=49.9

Q ss_pred             EEEEEeeecCCCCCCcccCCCCEEEEEECC-CCCeeEEEE-CCeEEEEcCCcEEecC
Q psy6450          25 LFVVLYNFKSRHADELDLKPGYKVTVIDTS-DQNWWKGKC-MGRVGYFPSNYVIKVQ   79 (139)
Q Consensus        25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~~-~~~w~~~~~-~g~~G~~P~~~v~~~~   79 (139)
                      ..+++|+|.++...+++...||++.+.... ..+||.+.+ .|..|.||++|++.+.
T Consensus         4 k~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV~~   60 (490)
T KOG2528|consen    4 KARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEVTR   60 (490)
T ss_pred             chhhhcchhhcccccccccccceeeecCcccccccccCCCccCccCCCcccceeeec
Confidence            478999999999999999999999998765 568999999 8999999999999876

>KOG3775|consensus

Probab=97.62  E-value=3.1e-05  Score=58.91  Aligned_cols=56  Identities=34%  Similarity=0.598  Sum_probs=50.9

Q ss_pred             EEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEecCCC
Q psy6450          26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        26 ~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~~   81 (139)
                      -++++.|.+..++||.|..||-|.|....++.|.+|.+  +|++|+||+.|..++...
T Consensus       265 HR~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd~~  322 (482)
T KOG3775|consen  265 HRAVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVDGP  322 (482)
T ss_pred             hhhhhhccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecCCc
Confidence            57889999999999999999999999888889999998  899999999999887643

>KOG4773|consensus

Probab=97.62  E-value=5.7e-06  Score=62.11  Aligned_cols=54  Identities=24%  Similarity=0.527  Sum_probs=51.1

Q ss_pred             EEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecC
Q psy6450          26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQ   79 (139)
Q Consensus        26 ~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   79 (139)
                      +.++++|.+....||.|.+||++.++.+++.+||.|+.++.+||+|.+|+..+.
T Consensus       178 ~~a~~df~gns~~EL~l~agdV~~~~~r~ek~W~~gk~R~~~g~yp~sF~~~ld  231 (386)
T KOG4773|consen  178 AEASFDFPGNSKLELNLVAGDVEFLLSRDEKYWLLGKVRGLTGYYPDSFVKQLD  231 (386)
T ss_pred             HHhhccCCCCccceeeeehhhHHHHHhhcccceeeeeeccccccccHHhhhhhc
Confidence            678999999999999999999999999999999999999999999999998774

>KOG1451|consensus

Probab=97.62  E-value=8.7e-05  Score=59.51  Aligned_cols=68  Identities=26%  Similarity=0.451  Sum_probs=53.0

Q ss_pred             CCCCCccccCCCCccEEEEEeeecCCCCCCcccCCCCEEEEEE-CCCCCeeEEEECCeEEEEcCCcEEe
Q psy6450          10 LHDLTQKAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVID-TSDQNWWKGKCMGRVGYFPSNYVIK   77 (139)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~-~~~~~w~~~~~~g~~G~~P~~~v~~   77 (139)
                      .++++....-......+.++|...+..+.+++|..|.++.-.. ...+||..|+.+|.+|++|.+||+.
T Consensus       743 ~ps~~~~~~~~~~~rk~k~lyAc~a~h~selsf~~gt~f~nv~~S~e~Gwl~GtLnGktglip~nyve~  811 (812)
T KOG1451|consen  743 LPSSSMGTTYKYLSRRVKTLYACTADHHSELSFEPGTIFTNVYESNEDGWLVGTLNGKTGLIPSNYVEP  811 (812)
T ss_pred             CCcccccCCCccccccccceeccCCCCcccccccCcceeeeecccCCCCceeeecCCCcccCcccccCc
Confidence            3334443333333344888999999999999999999987544 5678999999999999999999975

>KOG3523|consensus

Probab=97.47  E-value=1.1e-05  Score=64.56  Aligned_cols=56  Identities=21%  Similarity=0.325  Sum_probs=47.5

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEE-eCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIR-NGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~-~~~~~~G~~P~~~v~~~  139 (139)
                      +.+.+++.|. +...+++.+..+|++.+.....+||+.+. -.||..||||..|+++|
T Consensus       609 pQv~~~~sy~-a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI  665 (695)
T KOG3523|consen  609 PQVQCVHSYK-AKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEI  665 (695)
T ss_pred             Chhheeeccc-cCCCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHh
Confidence            3577888885 77788999999999988888899998755 56899999999999865

>KOG0609|consensus

Probab=97.29  E-value=7e-05  Score=59.30  Aligned_cols=53  Identities=23%  Similarity=0.625  Sum_probs=44.1

Q ss_pred             cEEEEEeeecCCCCC-------CcccCCCCEEEEEECCCCCeeEEEEC-----CeEEEEcCCcEE
Q psy6450          24 NLFVVLYNFKSRHAD-------ELDLKPGYKVTVIDTSDQNWWKGKCM-----GRVGYFPSNYVI   76 (139)
Q Consensus        24 ~~~~al~~~~~~~~~-------eLs~~~gd~i~v~~~~~~~w~~~~~~-----g~~G~~P~~~v~   76 (139)
                      .+++|+|||.+..++       .|.|++||++.|+++++..||.++..     +..|.+|+....
T Consensus       215 ~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~q  279 (542)
T KOG0609|consen  215 VFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQ  279 (542)
T ss_pred             eeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHH
Confidence            468999999987654       49999999999999999999999873     346899986654

>KOG4575|consensus

Probab=97.24  E-value=0.00051  Score=55.64  Aligned_cols=56  Identities=23%  Similarity=0.468  Sum_probs=45.5

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEecC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIKVQ   79 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~   79 (139)
                      -+++|+|.+.++..++|.|..||++.++...++-||-+..  ....|+||.+++..+.
T Consensus         9 ~~vrA~y~w~ge~eGdl~f~egDlie~trI~dgkwwi~lhrNk~~~g~fpsNFvhcLd   66 (874)
T KOG4575|consen    9 CMVRALYAWPGEREGDLKFTEGDLIEQTRIEDGKWWILLHRNKDEDGLFPSNFVHCLD   66 (874)
T ss_pred             ceEEeeccCCCCcccccceecccceeEEeeccceeeeeeeecccccccCcccceeecc
Confidence            3589999999999999999999999999876554554444  4567999999996554

>KOG2528|consensus

Probab=97.19  E-value=0.00014  Score=56.38  Aligned_cols=55  Identities=22%  Similarity=0.441  Sum_probs=47.3

Q ss_pred             cceeccccccccCCCceeeecCcEE-EEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIV-IQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v-~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..++.++|+ .+...+++.-.+|++ +...+..+||+...+..|.+|+||+.|||.+
T Consensus         4 k~RamyDf~-~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV~   59 (490)
T KOG2528|consen    4 KARAMYDFQ-SEGHSELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEVT   59 (490)
T ss_pred             chhhhcchh-hcccccccccccceeeecCcccccccccCCCccCccCCCcccceeee
Confidence            467888997 448888999999987 5578888999999999999999999999964

>KOG3771|consensus

Probab=97.15  E-value=0.00041  Score=54.25  Aligned_cols=52  Identities=19%  Similarity=0.183  Sum_probs=42.9

Q ss_pred             EEEEEeeecCCCCCCcccCCCCEEEEEECC-CCCeeEEEECCeEEEEcCCcEE
Q psy6450          25 LFVVLYNFKSRHADELDLKPGYKVTVIDTS-DQNWWKGKCMGRVGYFPSNYVI   76 (139)
Q Consensus        25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~~-~~~w~~~~~~g~~G~~P~~~v~   76 (139)
                      .+.++|+|.++..++|+|+.||+|.|+... .+.||.|...|..+-++.+|+.
T Consensus       402 ~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~mg~ke~~~~~~~~  454 (460)
T KOG3771|consen  402 KVKALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGWLMGVKESDWNGLFP  454 (460)
T ss_pred             ceeccccccccccccccccCCCEEEEecCCCccchhhHHHhhhccccccccee
Confidence            489999999999999999999999998754 4579999887766666666653

>KOG3557|consensus

Probab=96.90  E-value=0.00016  Score=58.35  Aligned_cols=53  Identities=25%  Similarity=0.322  Sum_probs=43.4

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQE  138 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~  138 (139)
                      ...+.|+|. +++..||++.+||++.+..+ ..+||.|++..|+.|++|.|.+..
T Consensus       502 ~~~~~Ydf~-arNs~ELsV~k~E~LEvl~d-~R~WW~~kn~~G~~GyvP~nIL~~  554 (721)
T KOG3557|consen  502 WVLVLYDFQ-ARNSSELSVKKGEVLEVLDD-GRKWWKVKNGHGRAGYVPSNILAP  554 (721)
T ss_pred             eeeeehhhh-cccchhhhhhhhhhhhhhhc-cccceeccCccCCCCCcchhhhcc
Confidence            455677884 88999999999999854433 378999999999999999998764

>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=96.76  E-value=0.0043  Score=34.37  Aligned_cols=38  Identities=24%  Similarity=0.374  Sum_probs=29.1

Q ss_pred             eeeecCcEEEEEcceeCC-EEEEEeCCCeEEeeecCCEE
Q psy6450         100 LSLLRDQIVIQIGDEVDG-MVMIRNGENRQGVCPLKYLQ  137 (139)
Q Consensus       100 l~~~~g~~v~~~~~~~~g-~~~~~~~~~~~G~~P~~~v~  137 (139)
                      -.+..|+.|.+.....++ |+.++..+++.||+..+||+
T Consensus        17 ~~l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~   55 (55)
T PF08239_consen   17 GQLPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS   55 (55)
T ss_dssp             EEEETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred             EEEeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence            556788887655554444 99998888899999999985

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.

>KOG2222|consensus

Probab=96.72  E-value=0.00012  Score=57.64  Aligned_cols=55  Identities=13%  Similarity=0.311  Sum_probs=45.1

Q ss_pred             CccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450          82 ERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQE  138 (139)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~  138 (139)
                      ..++++..+|. ...++++.|.+.|+|......++..| +++.+|-.||||+.|||.
T Consensus       548 ~krakal~df~-r~dddelgfrkndiitiisekdehcw-vgelnglrgwfpakfvel  602 (848)
T KOG2222|consen  548 AKRAKALHDFA-REDDDELGFRKNDIITIISEKDEHCW-VGELNGLRGWFPAKFVEL  602 (848)
T ss_pred             hHHHHHHhhhh-hccccccccccccEEEEeecCCccee-eeccccccccchHHHHHH
Confidence            44677888884 67788999999999977777777778 777777999999999874

>KOG3725|consensus

Probab=96.72  E-value=0.00039  Score=50.72  Aligned_cols=55  Identities=25%  Similarity=0.424  Sum_probs=48.1

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEEC--CCCCeeEEEECCeEEEEcCCcEEec
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDT--SDQNWWKGKCMGRVGYFPSNYVIKV   78 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~--~~~~w~~~~~~g~~G~~P~~~v~~~   78 (139)
                      ..++++|||.+..+.||++-..++|.|.+-  .+.+|..+..+++.|-+|..|++.+
T Consensus       318 rkArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmgErGnkkGKvPvtYlELL  374 (375)
T KOG3725|consen  318 RKARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMGERGNKKGKVPVTYLELL  374 (375)
T ss_pred             cceeeeecccccchhhhhhhhcceEEEEecCCCChHHhhhhhcCCCCCcchhHHHhc
Confidence            458999999999999999999999998874  3668999999999999999998643

>KOG3632|consensus

Probab=96.70  E-value=0.0012  Score=55.88  Aligned_cols=55  Identities=20%  Similarity=0.325  Sum_probs=39.1

Q ss_pred             cceeccccc-------cccCCCceeeecCcEEEEEcceeC-CEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQ-------IADGESGLSLLRDQIVIQIGDEVD-GMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~-------~~~~~~~l~~~~g~~v~~~~~~~~-g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      .+.+.+||.       ....+.||.|.+|+||++.++.+. |+| -.+.+|++|++|+|+|.++
T Consensus      1140 ifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY-~GE~ngr~GlIPcNmvae~ 1202 (1335)
T KOG3632|consen 1140 IFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFY-MGELNGRRGLIPCNMVAEQ 1202 (1335)
T ss_pred             eeEeeeccCccccCCCCChhhhccccccCcEEEEecccccccee-ecccccccccccccccccc
Confidence            345666774       223355799999999988765554 666 4555669999999999764

>KOG3725|consensus

Probab=96.48  E-value=0.00034  Score=51.02  Aligned_cols=56  Identities=27%  Similarity=0.392  Sum_probs=45.1

Q ss_pred             CccceeccccccccCCCceeeecCcEEEE--EcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          82 ERPLQVTHNLQIADGESGLSLLRDQIVIQ--IGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~l~~~~g~~v~~--~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ....++.++|. +....|+++..++++++  ....+..|.+.+.++ +.|-+|.+|+|.+
T Consensus       317 trkArVlyDYd-Aa~s~ElslladeiitVyslpGMD~dwlmgErGn-kkGKvPvtYlELL  374 (375)
T KOG3725|consen  317 TRKARVLYDYD-AALSQELSLLADEIITVYSLPGMDADWLMGERGN-KKGKVPVTYLELL  374 (375)
T ss_pred             ccceeeeeccc-ccchhhhhhhhcceEEEEecCCCChHHhhhhhcC-CCCCcchhHHHhc
Confidence            45788899996 66777899999999865  356667888777777 9999999999854

>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A

Probab=96.36  E-value=0.0056  Score=37.37  Aligned_cols=44  Identities=25%  Similarity=0.410  Sum_probs=30.7

Q ss_pred             CCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEecC
Q psy6450          36 HADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIKVQ   79 (139)
Q Consensus        36 ~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~   79 (139)
                      +.-+|.+++|+.+.|++..+..-|.|++ .|+-|+|+.+++-...
T Consensus        29 G~kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L~~~d   73 (89)
T PF14603_consen   29 GGKDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHLLPLD   73 (89)
T ss_dssp             -TTB----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS----
T ss_pred             CcccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHccCCC
Confidence            4678999999999999998889999999 8999999999985543

>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A

Probab=96.36  E-value=0.0043  Score=37.88  Aligned_cols=39  Identities=26%  Similarity=0.249  Sum_probs=28.4

Q ss_pred             CceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCE
Q psy6450          98 SGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYL  136 (139)
Q Consensus        98 ~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v  136 (139)
                      ..|.+.+||++-+.....++-|+||+++|+-|+||.++|
T Consensus        31 kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L   69 (89)
T PF14603_consen   31 KDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHL   69 (89)
T ss_dssp             TB----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS
T ss_pred             ccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHc
Confidence            459999999986666667888999999999999999987

>KOG4773|consensus

Probab=96.29  E-value=0.00072  Score=51.10  Aligned_cols=53  Identities=8%  Similarity=0.225  Sum_probs=42.6

Q ss_pred             ceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          85 LQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        85 ~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      .++..+|. +....||.+.+|+++.+..+...+||++..-+ .+||+|..|++.+
T Consensus       178 ~~a~~df~-gns~~EL~l~agdV~~~~~r~ek~W~~gk~R~-~~g~yp~sF~~~l  230 (386)
T KOG4773|consen  178 AEASFDFP-GNSKLELNLVAGDVEFLLSRDEKYWLLGKVRG-LTGYYPDSFVKQL  230 (386)
T ss_pred             HHhhccCC-CCccceeeeehhhHHHHHhhcccceeeeeecc-ccccccHHhhhhh
Confidence            44556663 66778899999999988888889999876665 8999999998753

>KOG3565|consensus

Probab=96.10  E-value=0.0019  Score=53.16  Aligned_cols=61  Identities=25%  Similarity=0.549  Sum_probs=51.6

Q ss_pred             CCCCccEEEEEeeecCCCCCCcccCCCCEEEEEECC-CCCeeEEE--ECCeEEEEcCCcEEecC
Q psy6450          19 RLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTS-DQNWWKGK--CMGRVGYFPSNYVIKVQ   79 (139)
Q Consensus        19 ~~~~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~-~~~w~~~~--~~g~~G~~P~~~v~~~~   79 (139)
                      ...+...+.|+|.|.++.++++++..|+++.+++.+ .++|-+++  ..+..|.+|.+|+....
T Consensus       574 ~~p~~~~~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~~  637 (640)
T KOG3565|consen  574 PSPPIRTSKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVTE  637 (640)
T ss_pred             CCCCccceecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCcccccccc
Confidence            344556799999999999999999999999988765 56899998  47889999999997654

>smart00287 SH3b Bacterial SH3 domain homologues

Probab=96.08  E-value=0.015  Score=32.93  Aligned_cols=38  Identities=18%  Similarity=0.226  Sum_probs=29.4

Q ss_pred             eeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEE
Q psy6450         100 LSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQ  137 (139)
Q Consensus       100 l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~  137 (139)
                      ..+..|+.+.+.....++|+.++..+|+.||++..++.
T Consensus        25 ~~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~~   62 (63)
T smart00287       25 GTLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVVN   62 (63)
T ss_pred             EEecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeeec
Confidence            45678888765555444999999998899999888764

>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=95.82  E-value=0.024  Score=31.25  Aligned_cols=36  Identities=36%  Similarity=0.697  Sum_probs=28.7

Q ss_pred             ccCCCCEEEEEECCCCC-eeEEEE-CCeEEEEcCCcEE
Q psy6450          41 DLKPGYKVTVIDTSDQN-WWKGKC-MGRVGYFPSNYVI   76 (139)
Q Consensus        41 s~~~gd~i~v~~~~~~~-w~~~~~-~g~~G~~P~~~v~   76 (139)
                      .+..|+.+.++.....+ |++.+. ++..||+...|+.
T Consensus        18 ~l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~   55 (55)
T PF08239_consen   18 QLPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS   55 (55)
T ss_dssp             EEETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred             EEeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence            46789999998876544 999944 8999999999874

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.

>KOG4429|consensus

Probab=95.75  E-value=0.0027  Score=47.21  Aligned_cols=51  Identities=16%  Similarity=0.012  Sum_probs=43.6

Q ss_pred             eccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          87 VTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        87 ~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      +.+.|+ ++.+++|....|++++......+|||.|+-.+ ..|-||+.|||++
T Consensus       368 afYSfq-arqddel~~e~gditif~Ekkeeg~~f~rl~g-d~~hf~Aa~iEea  418 (421)
T KOG4429|consen  368 AFYSFQ-ARQDDELGGEIGDITIFDEKKEEGPTFCRLLG-DFEHFHAAEIEEA  418 (421)
T ss_pred             hhhccc-cccccccCCcccceeeecCcccCCCceeeecc-ccCCCcHHHHHHh
Confidence            456664 77888999999999999999899999888776 8999999998863

>KOG1843|consensus

Probab=95.70  E-value=0.0048  Score=47.72  Aligned_cols=53  Identities=15%  Similarity=0.279  Sum_probs=38.3

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEc--ceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIG--DEVDGMVMIRNGENRQGVCPLKYLQE  138 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~--~~~~g~~~~~~~~~~~G~~P~~~v~~  138 (139)
                      .+.+.+.|. .+....++|.+||+|....  +..+.||.. ..+++.|+||+|||+.
T Consensus       418 ~a~a~ysfa-ge~~GDl~f~kgDii~il~ks~s~~dwwtg-r~~~~egifPanyv~~  472 (473)
T KOG1843|consen  418 IATALYSFA-GEQPGDLSFQKGDIITILKKSDSANDWWTG-RGNGYEGIFPANYVSL  472 (473)
T ss_pred             eeeeeehhc-cCCCCCcccccCceEEEecCCcchhhHHHh-hccccccccccceecc
Confidence            455666663 6666679999999985543  445678844 4555999999999974

>KOG0199|consensus

Probab=95.60  E-value=0.018  Score=48.03  Aligned_cols=51  Identities=29%  Similarity=0.423  Sum_probs=43.1

Q ss_pred             EEEEeeecCCCCCCcccCCCCEEEEEECCC-CCeeEEEE--CCeEEEEcCCcEE
Q psy6450          26 FVVLYNFKSRHADELDLKPGYKVTVIDTSD-QNWWKGKC--MGRVGYFPSNYVI   76 (139)
Q Consensus        26 ~~al~~~~~~~~~eLs~~~gd~i~v~~~~~-~~w~~~~~--~g~~G~~P~~~v~   76 (139)
                      ++|..+|....++.|-|++||.|.|++... +.||+|.+  +++.|-||.+-+.
T Consensus       377 ~~a~~~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt  430 (1039)
T KOG0199|consen  377 AVARETYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVT  430 (1039)
T ss_pred             ceeeeeccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceee
Confidence            456667777889999999999999998753 57999987  6789999998887

>KOG3775|consensus

Probab=95.56  E-value=0.01  Score=45.60  Aligned_cols=54  Identities=19%  Similarity=0.132  Sum_probs=43.2

Q ss_pred             ceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeC-CCeEEeeecCCEEeC
Q psy6450          85 LQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNG-ENRQGVCPLKYLQEV  139 (139)
Q Consensus        85 ~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~-~~~~G~~P~~~v~~~  139 (139)
                      -++...|. .+..+||.+..||.|.+....++-|+..-+. .|+.|+||+.|+-+|
T Consensus       265 HR~~~rFv-PRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~ev  319 (482)
T KOG3775|consen  265 HRAVFRFV-PRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEV  319 (482)
T ss_pred             hhhhhhcc-CCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEec
Confidence            35666774 7888899999999999888888889765544 468899999998654

>KOG4278|consensus

Probab=95.26  E-value=0.016  Score=47.82  Aligned_cols=53  Identities=17%  Similarity=0.305  Sum_probs=40.3

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeC-CEEEEEeCCCeEEeeecCCEEe
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVD-GMVMIRNGENRQGVCPLKYLQE  138 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~-g~~~~~~~~~~~G~~P~~~v~~  138 (139)
                      .+.+.|+|. +..++-|++.+||-+-+.+-..+ .|..++.-+|+ ||||+||+.-
T Consensus        92 LFVALYDFv-asGdntLSitKGeklRvLGYN~NgEWcEartKNGq-GWVPSNyItP  145 (1157)
T KOG4278|consen   92 LFVALYDFV-ASGDNTLSITKGEKLRVLGYNKNGEWCEARTKNGQ-GWVPSNYITP  145 (1157)
T ss_pred             eeEeeeeee-ccccceeeeecCceEEEeeecCCCcceeecccCCC-cccccccccc
Confidence            577889995 88888899999998865554444 55566665544 9999999863

>KOG4575|consensus

Probab=94.71  E-value=0.031  Score=45.71  Aligned_cols=52  Identities=15%  Similarity=0.229  Sum_probs=36.4

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeC--CCeEEeeecCCEE
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNG--ENRQGVCPLKYLQ  137 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~--~~~~G~~P~~~v~  137 (139)
                      .++|.+.. .++.++.+.|.+||++.+.+- .+|||++...  ....|+||.|||-
T Consensus        10 ~vrA~y~w-~ge~eGdl~f~egDlie~trI-~dgkwwi~lhrNk~~~g~fpsNFvh   63 (874)
T KOG4575|consen   10 MVRALYAW-PGEREGDLKFTEGDLIEQTRI-EDGKWWILLHRNKDEDGLFPSNFVH   63 (874)
T ss_pred             eEEeeccC-CCCcccccceecccceeEEee-ccceeeeeeeecccccccCccccee
Confidence            34556666 477888899999999865544 3566665522  2366999999983

>PRK10884 SH3 domain-containing protein; Provisional

Probab=94.48  E-value=0.049  Score=38.84  Aligned_cols=39  Identities=23%  Similarity=0.246  Sum_probs=30.7

Q ss_pred             eeeecCcEEEEEccee-CCEEEEEeCCCeEEeeecCCEEe
Q psy6450         100 LSLLRDQIVIQIGDEV-DGMVMIRNGENRQGVCPLKYLQE  138 (139)
Q Consensus       100 l~~~~g~~v~~~~~~~-~g~~~~~~~~~~~G~~P~~~v~~  138 (139)
                      -.+..|+.|.+..... .||..|+..+|+.||++..||..
T Consensus        48 ~~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls~   87 (206)
T PRK10884         48 GTLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLST   87 (206)
T ss_pred             EEEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhcC
Confidence            4567888886555433 58999999999999999999863

>smart00287 SH3b Bacterial SH3 domain homologues

Probab=94.40  E-value=0.12  Score=29.12  Aligned_cols=36  Identities=39%  Similarity=0.570  Sum_probs=28.8

Q ss_pred             cccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcE
Q psy6450          40 LDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYV   75 (139)
Q Consensus        40 Ls~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v   75 (139)
                      -.+..|+.+.++.....+|.+.+. .|..||++..++
T Consensus        25 ~~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~   61 (63)
T smart00287       25 GTLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVV   61 (63)
T ss_pred             EEecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeee
Confidence            347789999999876548999988 599999976654

>KOG1451|consensus

Probab=94.10  E-value=0.046  Score=44.49  Aligned_cols=45  Identities=24%  Similarity=0.412  Sum_probs=33.1

Q ss_pred             ccCCCceeeecCcEEEEEc-ceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          94 ADGESGLSLLRDQIVIQIG-DEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        94 ~~~~~~l~~~~g~~v~~~~-~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      +....++++..|.+..-.- ...+||. ++..+|++|++|.||||-+
T Consensus       767 a~h~selsf~~gt~f~nv~~S~e~Gwl-~GtLnGktglip~nyve~l  812 (812)
T KOG1451|consen  767 ADHHSELSFEPGTIFTNVYESNEDGWL-VGTLNGKTGLIPSNYVEPL  812 (812)
T ss_pred             CCCcccccccCcceeeeecccCCCCce-eeecCCCcccCcccccCcC
Confidence            4455579999999885443 3345766 6667779999999999853

>KOG3812|consensus

Probab=93.96  E-value=0.024  Score=43.21  Aligned_cols=47  Identities=13%  Similarity=0.473  Sum_probs=37.7

Q ss_pred             EEEEeeecCCCCCC-------cccCCCCEEEEEECCCCCeeEEEE---CCeEEEEcC
Q psy6450          26 FVVLYNFKSRHADE-------LDLKPGYKVTVIDTSDQNWWKGKC---MGRVGYFPS   72 (139)
Q Consensus        26 ~~al~~~~~~~~~e-------Ls~~~gd~i~v~~~~~~~w~~~~~---~g~~G~~P~   72 (139)
                      +++.-+|.+.-+++       ++|...|.+.|.++-+++||.|+.   .+..||+|.
T Consensus        61 V~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPs  117 (475)
T KOG3812|consen   61 VRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPS  117 (475)
T ss_pred             EEeccccCCccCCCCCCCCceeeeccccceeehhhcccchhHHHHhhcCCccccccc
Confidence            44556787765544       889999999999999999999997   456799986

>PRK10884 SH3 domain-containing protein; Provisional

Probab=93.84  E-value=0.09  Score=37.53  Aligned_cols=40  Identities=20%  Similarity=0.323  Sum_probs=33.5

Q ss_pred             cccCCCCEEEEEECCC-CCeeEEEE-CCeEEEEcCCcEEecC
Q psy6450          40 LDLKPGYKVTVIDTSD-QNWWKGKC-MGRVGYFPSNYVIKVQ   79 (139)
Q Consensus        40 Ls~~~gd~i~v~~~~~-~~w~~~~~-~g~~G~~P~~~v~~~~   79 (139)
                      -++.+|+.+.+++..+ .+|.+.+. +|++||++..|+....
T Consensus        48 ~~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls~~p   89 (206)
T PRK10884         48 GTLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLSTTP   89 (206)
T ss_pred             EEEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhcCCc
Confidence            4678999999998664 68999987 8899999999987654

>KOG3771|consensus

Probab=93.79  E-value=0.031  Score=44.05  Aligned_cols=51  Identities=20%  Similarity=0.426  Sum_probs=36.7

Q ss_pred             cceeccccccccCCCceeeecCcEEEEE-----cceeCCEEEEEeCCCeEEeeecCC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQI-----GDEVDGMVMIRNGENRQGVCPLKY  135 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~-----~~~~~g~~~~~~~~~~~G~~P~~~  135 (139)
                      .+.+.++|. +...++|++..|++|.+.     .++++||.|+...+...|+||+++
T Consensus       402 ~v~a~~dy~-a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~mg~ke~~~~~~~~~~~  457 (460)
T KOG3771|consen  402 KVKALHDYA-AQDTDELSFEAGDVILVIPSDNPEEQDEGWLMGVKESDWNGLFPLNF  457 (460)
T ss_pred             ceecccccc-ccccccccccCCCEEEEecCCCccchhhHHHhhhcccccccceeccc
Confidence            567888995 777778999999988443     344557776665554567888775

>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=93.71  E-value=0.19  Score=27.72  Aligned_cols=35  Identities=23%  Similarity=0.206  Sum_probs=26.5

Q ss_pred             eeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCE
Q psy6450         100 LSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYL  136 (139)
Q Consensus       100 l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v  136 (139)
                      ..+.+|..+.+. ...++|..++ .+|.+||++.+.|
T Consensus        19 ~~l~~g~~v~v~-~~~~~W~~V~-~~g~~GWv~~~~l   53 (55)
T PF06347_consen   19 ARLEPGVPVRVI-ECRGGWCKVR-ADGRTGWVHKSLL   53 (55)
T ss_pred             EEECCCCEEEEE-EccCCeEEEE-ECCeEEeEEeeec
Confidence            556666666544 5568999999 8889999998765

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.

>KOG0197|consensus

Probab=93.41  E-value=0.017  Score=45.83  Aligned_cols=54  Identities=13%  Similarity=0.182  Sum_probs=42.4

Q ss_pred             cceeccccccccCCCceeeecCcE-EEEEcceeCCEEEEEeC-CCeEEeeecCCEEe
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQI-VIQIGDEVDGMVMIRNG-ENRQGVCPLKYLQE  138 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~-v~~~~~~~~g~~~~~~~-~~~~G~~P~~~v~~  138 (139)
                      ...+.++|. +....+|++..|+. ..+..+....||+++.. .+..|++|.|||.+
T Consensus        13 ~~valyd~~-s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~   68 (468)
T KOG0197|consen   13 IVVALYDYA-SRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVAR   68 (468)
T ss_pred             eEEEecccc-CCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeec
Confidence            455667775 55677899999999 56677777899988866 56889999999974

>KOG3705|consensus

Probab=92.65  E-value=0.15  Score=39.94  Aligned_cols=53  Identities=32%  Similarity=0.368  Sum_probs=44.4

Q ss_pred             EEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEe
Q psy6450          25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIK   77 (139)
Q Consensus        25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~   77 (139)
                      ..++++++.++..+|+.++.||.+.|-...-+|.-.|.+  .++.|.||+--+++
T Consensus       511 n~ivi~aH~prt~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvre  565 (580)
T KOG3705|consen  511 NVIVIEAHIPRTNKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVRE  565 (580)
T ss_pred             ceEEEEecCCCcccccCcccCCeeeecccccccccccccccccccCCCccceeee
Confidence            378999999999999999999999888766566667776  67899999877764

>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=92.57  E-value=0.35  Score=26.63  Aligned_cols=35  Identities=31%  Similarity=0.621  Sum_probs=28.6

Q ss_pred             cccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcE
Q psy6450          40 LDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV   75 (139)
Q Consensus        40 Ls~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v   75 (139)
                      ..+.+|..+.+.+. ..+|.+.+.+|..||++.+.+
T Consensus        19 ~~l~~g~~v~v~~~-~~~W~~V~~~g~~GWv~~~~l   53 (55)
T PF06347_consen   19 ARLEPGVPVRVIEC-RGGWCKVRADGRTGWVHKSLL   53 (55)
T ss_pred             EEECCCCEEEEEEc-cCCeEEEEECCeEEeEEeeec
Confidence            45778888888865 578999998999999987765

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.

>COG3103 SH3 domain protein [Signal transduction mechanisms]

Probab=92.05  E-value=0.28  Score=35.01  Aligned_cols=39  Identities=26%  Similarity=0.264  Sum_probs=31.0

Q ss_pred             eeeecCcEEEEEcc-eeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450         100 LSLLRDQIVIQIGD-EVDGMVMIRNGENRQGVCPLKYLQE  138 (139)
Q Consensus       100 l~~~~g~~v~~~~~-~~~g~~~~~~~~~~~G~~P~~~v~~  138 (139)
                      -++..||.+.+... ...||..++..+|+.|+|+..++..
T Consensus        48 ~~i~~Ge~vtvl~~~~~~~~~qI~~~~g~t~wi~~~~lt~   87 (205)
T COG3103          48 GSIKAGEKVTVLGTDGNTGYYQIRDSSGRTGWILSKNLTS   87 (205)
T ss_pred             eEecCCcEEEEEEEcCcccEEEEEecCCceEEEechhhcc
Confidence            56788898855544 3448999999999999999998764

>PRK13914 invasion associated secreted endopeptidase; Provisional

Probab=91.11  E-value=0.37  Score=38.62  Aligned_cols=39  Identities=23%  Similarity=0.265  Sum_probs=32.0

Q ss_pred             eeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450         100 LSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQE  138 (139)
Q Consensus       100 l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~  138 (139)
                      -.+..|+.|.+.....+||+.++..+|+.||+-..||..
T Consensus       103 gsl~~G~~V~Vl~~~~ngW~kI~~~~GktGwV~~~YLs~  141 (481)
T PRK13914        103 TSIKGGTKVTVETTESNGWHKITYNDGKTGFVNGKYLTD  141 (481)
T ss_pred             eeecCCCEEEEeecccCCeEEEEcCCCCEEEEecccccC
Confidence            567788888665445689999999999999999999864

>KOG0609|consensus

Probab=90.60  E-value=0.06  Score=43.20  Aligned_cols=54  Identities=22%  Similarity=0.264  Sum_probs=38.6

Q ss_pred             cceeccccc------cccCCCceeeecCcEEEEEcceeCCEEEEEeCC----CeEEeeecCCEE
Q psy6450          84 PLQVTHNLQ------IADGESGLSLLRDQIVIQIGDEVDGMVMIRNGE----NRQGVCPLKYLQ  137 (139)
Q Consensus        84 ~~~~~~~~~------~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~----~~~G~~P~~~v~  137 (139)
                      ..++.++|.      ....+.++.|.+|||+-+....+..||-.+..+    +..|++|+..++
T Consensus       216 ~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~q  279 (542)
T KOG0609|consen  216 FVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQ  279 (542)
T ss_pred             eehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHH
Confidence            345666665      233456699999999987888888998665432    567999997554

>COG3103 SH3 domain protein [Signal transduction mechanisms]

Probab=90.43  E-value=0.56  Score=33.46  Aligned_cols=96  Identities=18%  Similarity=0.260  Sum_probs=55.0

Q ss_pred             cccCCCCEEEEEECCCC-CeeEEEE-CCeEEEEcCCcEEecCCCCccceeccccccccCCC-----ceeeecCcEEEEEc
Q psy6450          40 LDLKPGYKVTVIDTSDQ-NWWKGKC-MGRVGYFPSNYVIKVQPGERPLQVTHNLQIADGES-----GLSLLRDQIVIQIG  112 (139)
Q Consensus        40 Ls~~~gd~i~v~~~~~~-~w~~~~~-~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~~g~~v~~~~  112 (139)
                      =++++|+.+.|+..... +|.+.+. .|..|||+..++........+... -.........     --.+..|..+.+..
T Consensus        48 ~~i~~Ge~vtvl~~~~~~~~~qI~~~~g~t~wi~~~~lt~e~s~~~~~p~-~~~nVr~~t~t~~~v~g~~~~~t~~~~~s  126 (205)
T COG3103          48 GSIKAGEKVTVLGTDGNTGYYQIRDSSGRTGWILSKNLTSEPSSNERVPD-LELNVRELTKTLSNVDGTWKQGTAVMQIS  126 (205)
T ss_pred             eEecCCcEEEEEEEcCcccEEEEEecCCceEEEechhhccccccceecCc-hhhhhhhcccchhhhhhhhhcCcEEEEEe
Confidence            46889999999987644 7999888 789999999888654432110000 0000011000     02334444555555


Q ss_pred             ceeCCEEEEEeCCCeEEeeecCCEE
Q psy6450         113 DEVDGMVMIRNGENRQGVCPLKYLQ  137 (139)
Q Consensus       113 ~~~~g~~~~~~~~~~~G~~P~~~v~  137 (139)
                      ...++|+... ..++.|++-..|+.
T Consensus       127 k~~~~w~~~~-~~~k~~~vs~q~~~  150 (205)
T COG3103         127 KTQNNWYIIT-LKGKNGYVSGQLVT  150 (205)
T ss_pred             eccccchhhh-hhcccchhhhhhee
Confidence            5557887433 34477777666653

>KOG0040|consensus

Probab=88.81  E-value=0.0074  Score=53.50  Aligned_cols=56  Identities=29%  Similarity=0.800  Sum_probs=50.1

Q ss_pred             EEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        26 ~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      +.|+|+|....+-+.+.++||+++++....-.||.+++.-+.|++|+.|++.+...
T Consensus       971 v~alyd~q~kSprev~mKkgDvltll~s~nkdwwkve~~d~qg~vpa~yvk~~~~~ 1026 (2399)
T KOG0040|consen  971 VLALYDYQEKSPREVTMKKGDVLTLLNSINKDWWKVEVNDRQGFVPAAYVKRLDPG 1026 (2399)
T ss_pred             HHHHHHHHhcCHHHHHHhhhhHHHHHhhcccccccchhhhhcCcchHHHHHHhccC
Confidence            56899999999999999999999988877789999999888899999999876544

>KOG3565|consensus

Probab=87.09  E-value=0.14  Score=42.43  Aligned_cols=53  Identities=21%  Similarity=0.322  Sum_probs=41.1

Q ss_pred             eeccccccccCCCceeeecCcEE-EEEcceeCCEEEEE-eCCCeEEeeecCCEEeC
Q psy6450          86 QVTHNLQIADGESGLSLLRDQIV-IQIGDEVDGMVMIR-NGENRQGVCPLKYLQEV  139 (139)
Q Consensus        86 ~~~~~~~~~~~~~~l~~~~g~~v-~~~~~~~~g~~~~~-~~~~~~G~~P~~~v~~~  139 (139)
                      .+.+.|. +.+++.+.+.+|+++ ....+..+||=.++ ..++..|+||.+||+.+
T Consensus       582 ~a~~~~~-~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~  636 (640)
T KOG3565|consen  582 KALYAFE-GQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVT  636 (640)
T ss_pred             ecccCcC-CCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCccccccc
Confidence            3455563 677788999999988 44566678998777 77779999999999853

>PRK13914 invasion associated secreted endopeptidase; Provisional

Probab=86.01  E-value=1.4  Score=35.39  Aligned_cols=39  Identities=31%  Similarity=0.516  Sum_probs=32.5

Q ss_pred             cccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEec
Q psy6450          40 LDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIKV   78 (139)
Q Consensus        40 Ls~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~   78 (139)
                      -++.+|+.|.|+.....+|++.+. +|+.||+-..|+..-
T Consensus       103 gsl~~G~~V~Vl~~~~ngW~kI~~~~GktGwV~~~YLs~~  142 (481)
T PRK13914        103 TSIKGGTKVTVETTESNGWHKITYNDGKTGFVNGKYLTDK  142 (481)
T ss_pred             eeecCCCEEEEeecccCCeEEEEcCCCCEEEEecccccCC
Confidence            468899999998645678999998 699999999998753

>smart00743 Agenet Tudor-like domain present in plant sequences

Probab=83.55  E-value=2.3  Score=23.73  Aligned_cols=23  Identities=30%  Similarity=0.829  Sum_probs=20.0

Q ss_pred             ccCCCCEEEEEECCCCCeeEEEE
Q psy6450          41 DLKPGYKVTVIDTSDQNWWKGKC   63 (139)
Q Consensus        41 s~~~gd~i~v~~~~~~~w~~~~~   63 (139)
                      .|++|+.+.+....++.||.+..
T Consensus         2 ~~~~G~~Ve~~~~~~~~W~~a~V   24 (61)
T smart00743        2 DFKKGDRVEVFSKEEDSWWEAVV   24 (61)
T ss_pred             CcCCCCEEEEEECCCCEEEEEEE
Confidence            57899999999877789999987

Domain in plant sequences with possible chromatin-associated functions.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	139
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		2e-10
2dl4_A	68	Solution Structure Of The First Sh3 Domain Of Stac		5e-10
1x2k_A	68	Solution Structure Of The Sh3 Domain Of Human Osteo		4e-09
1zlm_A	58	Crystal Structure Of The Sh3 Domain Of Human Osteoc		5e-09
1g83_A	165	Crystal Structure Of Fyn Sh3-Sh2 Length = 165		7e-09
3uf4_A	164	Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn P		1e-08
1a0n_B	69	Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene		2e-08
1azg_B	67	Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene		2e-08
2l0a_A	72	Solution Nmr Structure Of Signal Transducing Adapte		2e-08
2vvk_A	56	Grb2 Sh3c (1) Length = 56		2e-08
2vwf_A	58	Grb2 Sh3c (2) Length = 58		2e-08
3ua6_A	64	Crystal Structure Of The Human Fyn Sh3 Domain Lengt		2e-08
1avz_C	57	V-1 Nef Protein In Complex With Wild Type Fyn Sh3 D		3e-08
1fyn_A	62	Phosphotransferase Length = 62		3e-08
1m27_C	61	Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX		3e-08
1gri_A	217	Grb2 Length = 217		3e-08
1io6_A	59	Growth Factor Receptor-Bound Protein 2 (Grb2) C-Ter		3e-08
1shf_A	59	Crystal Structure Of The Sh3 Domain In Human Fyn; C		3e-08
2cub_A	88	Solution Structure Of The Sh3 Domain Of The Human C		3e-08
1gcq_A	61	Crystal Structure Of Vav And Grb2 Sh3 Domains Lengt		3e-08
2yt6_A	109	Solution Structure Of The Sh3_1 Domain Of Yamaguchi		4e-08
3jv3_A	283	Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l		5e-08
1x69_A	79	Solution Structures Of The Sh3 Domain Of Human Src		6e-08
2d1x_A	66	The Crystal Structure Of The Cortactin-Sh3 Domain A		8e-08
1x2q_A	88	Solution Structure Of The Sh3 Domain Of The Signal		1e-07
3ulr_B	65	Lysozyme Contamination Facilitates Crystallization		1e-07
2dm1_A	73	Solution Structure Of The Second Sh3 Domain Of Huma		1e-07
3gf9_A	295	Crystal Structure Of Human Intersectin 2 Rhogef Dom		1e-07
1uj0_A	62	Crystal Structure Of Stam2 Sh3 Domain In Complex Wi		1e-07
1ujy_A	76	Solution Structure Of Sh3 Domain In RacCDC42 GUANIN		1e-07
1oeb_A	62	MonaGADS SH3C DOMAIN Length = 62		2e-07
1uti_A	58	MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE L		2e-07
1ynz_A	58	Sh3 Domain Of Yeast Pin3 Length = 58		2e-07
2js0_A	61	Solution Structure Of Second Sh3 Domain Of Adaptor		2e-07
1h3h_A	60	Structural Basis For Specific Recognition Of An Rxx		2e-07
2d0n_A	59	Crystal Structure Of The C-Terminal Sh3 Domain Of T		2e-07
2d8j_A	77	Solution Structure Of The Sh3 Domain Of Fyn-Related		2e-07
3h0f_A	73	Crystal Structure Of The Human Fyn Sh3 R96w Mutant		2e-07
3h0h_A	73	Human Fyn Sh3 Domain R96i Mutant, Crystal Form I Le		2e-07
4d8d_A	58	Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant		3e-07
2hda_A	64	Yes Sh3 Domain Length = 64		3e-07
2ak5_A	64	Beta Pix-Sh3 Complexed With A Cbl-B Peptide Length		3e-07
1efn_A	59	Hiv-1 Nef Protein In Complex With R96i Mutant Fyn S		3e-07
2frw_A	57	Solution Structure Of The Second Sh3 Domain Of Huma		4e-07
4e6r_A	58	Crystal Structure Of A Cytoplasmic Protein Nck2 (Nc		4e-07
1k76_A	62	Solution Structure Of The C-Terminal Sem-5 Sh3 Doma		4e-07
2d8h_A	80	Solution Structure Of The Sh3 Domain Of Hypothetica		5e-07
3fj5_A	57	Crystal Structure Of The C-Src-Sh3 Domain Length =		6e-07
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		6e-07
1sem_A	58	Structural Determinants Of Peptide-Binding Orientat		7e-07
3sem_A	60	Sem5 Sh3 Domain Complexed With Peptoid Inhibitor Le		8e-07
2bz8_A	58	N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Pepti		9e-07
1zsg_A	65	Beta Pix-Sh3 Complexed With An Atypical Peptide Fro		9e-07
2kbt_A	142	Attachment Of An Nmr-Invisible Solubility Enhanceme		1e-06
2cuc_A	70	Solution Structure Of The Sh3 Domain Of The Mouse H		1e-06
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		1e-06
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		1e-06
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		1e-06
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		1e-06
1udl_A	98	The Solution Structure Of The Fifth Sh3 Domain Of I		1e-06
1prl_C	64	Two Binding Orientations For Peptides To Src Sh3 Do		2e-06
3cqt_A	79	N53i V55l Mutant Of Fyn Sh3 Domain Length = 79		2e-06
4hxj_A	60	Crystal Structure Of Sh3:rgt Complex Length = 60		2e-06
1qwe_A	64	C-Src Sh3 Domain Complexed With Ligand App12 Length		2e-06
4ag2_C	84	Human Chymase - Fynomer Complex Length = 84		2e-06
2yun_A	79	Solution Structure Of The Sh3 Domain Of Human Nostr		3e-06
2esw_A	61	Atomic Structure Of The N-Terminal Sh3 Domain Of Mo		3e-06
2a08_A	60	Structure Of The Yeast Yhh6 Sh3 Domain Length = 60		3e-06
2df6_A	59	Crystal Structure Of The Sh3 Domain Of Betapix In C		3e-06
1uhc_A	79	Solution Structure Of Rsgi Ruh-002, A Sh3 Domain Of		4e-06
1ad5_A	438	Src Family Kinase Hck-Amp-Pnp Complex Length = 438		4e-06
2l2p_A	66	Folding Intermediate Of The Fyn Sh3 A39vN53PV55L FR		4e-06
2ew3_A	68	Solution Structure Of The Sh3 Domain Of Human Sh3gl		5e-06
3nhn_A	193	Crystal Structure Of The Src-Family Kinase Hck Sh3-		5e-06
1oot_A	60	Crystal Structure Of The Sh3 Domain From A S. Cerev		6e-06
3iql_A	71	Crystal Structure Of The Rat Endophilin-A1 Sh3 Doma		7e-06
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		7e-06
2krn_A	60	High Resolution Structure Of The Second Sh3 Domain		9e-06
3thk_A	73	Structure Of Sh3 Chimera With A Type Ii Ligand Link		9e-06
1uue_A	62	A-Spectrin Sh3 Domain (V44t, D48g Mutant) Length =		9e-06
3ngp_A	62	High Resolution Structure Of Alpha-Spectrin Sh3 Dom		9e-06
2dbm_A	73	Solution Structures Of The Sh3 Domain Of Human Sh3-		1e-05
2o2o_A	92	Solution Structure Of Domain B From Human Cin85 Pro		1e-05
4afq_C	85	Human Chymase - Fynomer Complex Length = 85		1e-05
3m0p_A	62	Crystal Structure Of The R21d Mutant Of Alpha-Spect		1e-05
2ydl_A	69	Crystal Structure Of Sh3c From Cin85 Length = 69		2e-05
3m0s_A	57	Crystal Structure Of The R21d Mutant Of Alpha-Spect		2e-05
4afz_C	84	Human Chymase - Fynomer Complex Length = 84		2e-05
4hck_A	72	Human Hck Sh3 Domain, Nmr, 25 Structures Length = 7		2e-05
1bk2_A	57	A-Spectrin Sh3 Domain D48g Mutant Length = 57		2e-05
2oi3_A	86	Nmr Structure Analysis Of The Hematopoetic Cell Kin		2e-05
2k6d_A	62	Cin85 Sh3-C Domain In Complex With Ubiquitin Length		3e-05
2k9g_A	73	Solution Structure Of The Third Sh3 Domain Of The C		3e-05
1e6g_A	62	A-Spectrin Sh3 Domain A11v, V23l, M25i, V53i, V58l		3e-05
1bu1_A	57	Src Family Kinase Hck Sh3 Domain Length = 57		3e-05
1wi7_A	68	Solution Structure Of The Sh3 Domain Of Sh3-Domain		4e-05
4glm_A	72	Crystal Structure Of The Sh3 Domain Of Dnmbp Protei		4e-05
3c0c_A	73	X-Ray Crystal Structure Of The Rat Endophilin A2 Sh		4e-05
1hd3_A	62	A-Spectrin Sh3 Domain F52y Mutant Length = 62		4e-05
1gl5_A	67	Nmr Structure Of The Sh3 Domain From The Tec Protei		4e-05
3u23_A	65	Atomic Resolution Crystal Structure Of The 2nd Sh3		4e-05
2da9_A	70	Solution Structure Of The Third Sh3 Domain Of Sh3-D		4e-05
3haj_A	486	Crystal Structure Of Human Pacsin2 F-Bar Domain (P2		5e-05
1e7o_A	62	A-Spectrin Sh3 Domain A11v, V23l, M25v, V44i, V58l		6e-05
2cdt_A	62	Alpha-Spectrin Sh3 Domain A56s Mutant Length = 62		6e-05
2xmf_A	60	Myosin 1e Sh3 Length = 60		7e-05
2fei_A	65	Solution Structure Of The Second Sh3 Domain Of Huma		7e-05
4gbq_A	74	Solution Nmr Structure Of The Grb2 N-Terminal Sh3 D		7e-05
1wa7_A	65	Sh3 Domain Of Human Lyn Tyrosine Kinase Length = 65		7e-05
1qkx_A	62	Alpha-Spectrin Src Homology 3 Domain, N47a Mutant I		7e-05
3reb_B	90	Hiv-1 Nef Protein In Complex With Engineered Hck-Sh		7e-05
2nwm_A	65	Solution Structure Of The First Sh3 Domain Of Human		8e-05
2rf0_A	89	Crystal Structure Of Human Mixed Lineage Kinase Map		8e-05
2dl3_A	68	Solution Structure Of The First Sh3 Domain Of Human		9e-05
2drm_A	58	Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 L		1e-04
2drk_A	59	Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 L		1e-04
2f2v_A	62	Alpha-Spectrin Sh3 Domain A56g Mutant Length = 62		1e-04
2f2w_A	62	Alpha-Spectrin Sh3 Domain R21a Mutant Length = 62		1e-04
2lj3_A	63	Pfbd: High-Throughput Strategy Of Backbone Fold Det		1e-04
1m8m_A	62	Solid-State Mas Nmr Structure Of The A-Spectrin Sh3		1e-04
1aze_A	56	Nmr Structure Of The Complex Between The C32s-Y7v M		1e-04
2f2x_A	62	Alpha-Spectrin Sh3 Domain R21g Mutant Length = 62		1e-04
1e6h_A	62	A-Spectrin Sh3 Domain A11v, M25i, V44i, V58l Mutant		1e-04
1lck_A	175	Sh3-Sh2 Domain Fragment Of Human P56-Lck Tyrosine K		1e-04
1pwt_A	61	Thermodynamic Analysis Of Alpha-Spectrin Sh3 And Tw		1e-04
1h8k_A	62	A-Spectrin Sh3 Domain A11v, V23l, M25v, V53i, V58l		1e-04
3rea_B	61	Hiv-1 Nef Protein In Complex With Engineered Hck-Sh		1e-04
4d8k_A	175	Crystal Structure Of A Sh3-Sh2 Domains Of A Lymphoc		1e-04
1qkw_A	62	Alpha-Spectrin Src Homology 3 Domain, N47g Mutant I		1e-04
1neg_A	83	Crystal Structure Analysis Of N-And C-Terminal Labe		2e-04
1x27_A	167	Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding S		2e-04
3i9q_A	57	Crystal Structure Of The Triple Mutant S19g-P20d-R2		2e-04
1aww_A	67	Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, 42 S		2e-04
1qly_A	58	Nmr Study Of The Sh3 Domain From Bruton's Tyrosine		2e-04
2dlm_A	68	Solution Structure Of The First Sh3 Domain Of Human		2e-04
4esr_A	69	Molecular And Structural Characterization Of The Sh		2e-04
2jte_A	64	Third Sh3 Domain Of Cd2ap Length = 64		3e-04
2rmo_A	70	Solution Structure Of Alpha-Spectrin_sh3-Bergerac F		4e-04
2rot_A	70	Structure Of Chimeric Variant Of Sh3 Domain- Shh Le		4e-04
2ed0_A	78	Solution Structure Of The Sh3 Domain Of Abl Interac		4e-04
2oaw_A	65	Structure Of Shh Variant Of "bergerac" Chimera Of S		5e-04
1wxt_A	68	Solution Structure Of The Sh3 Domain Of Human Hypot		5e-04
1u5s_A	71	Nmr Structure Of The Complex Between Nck-2 Sh3 Doma		6e-04
2dil_A	69	Solution Structure Of The Sh3 Domain Of The Human P		7e-04
1wx6_A	91	Solution Structure Of The Sh3 Domain Of The Human C		8e-04
2ct3_A	70	Solution Structure Of The Sh3 Domain Of The Vinexin		8e-04
2eqi_A	69	Solution Structure Of The Sh3 Domain From Phospholi		9e-04

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 25  LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERP 84
           +F  LY F+ R  DEL ++ G  + + D SD NWWKG   GR G  PSNYV      E+ 
Sbjct: 16  VFRALYTFEPRTPDELYIEEGDIIYITDXSDTNWWKGTSKGRTGLIPSNYV-----AEQA 70
Query: 85  LQVTHNLQIADGESGLSLLRDQIVIQIG 112
             + + L  A     LS LR+ +  ++G
Sbjct: 71  ESIDNPLHEAAKRGNLSWLRECLDNRVG 98

>pdb|2DL4|A Chain A, Solution Structure Of The First Sh3 Domain Of Stac Protein Length = 68

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 41/56 (73%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQ 79
          N +V LY F  +  ++L+++PG  +T+++ S+++WWKGK   R+G+FP+N+V ++ 
Sbjct: 8  NTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRLS 63

>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast Stimulating Factor 1 (Ostf1) Length = 68

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 31/53 (58%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIK 77
          +F  LY F+ R  DEL  + G  + + D SD NWWKG   GR G  PSNYV +
Sbjct: 9  VFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE 61

>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast Stimulating Factor Length = 58

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 31/53 (58%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIK 77
          +F  LY F+ R  DEL  + G  + + D SD NWWKG   GR G  PSNYV +
Sbjct: 5  VFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE 57

>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2 Length = 165

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Query: 24  NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQPG 81
            LFV LY++++R  D+L    G K  ++++S+ +WW+ + +  G  GY PSNYV  V   
Sbjct: 4   TLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVDSI 63
Query: 82  ERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPL 133
           +        L   D E  L        +  G+   G  +IR  E  +G   L
Sbjct: 64  QAEEWYFGKLGRKDAERQL--------LSFGNP-RGTFLIRESETTKGAYSL 106

>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein (Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus Musculus At 1.98 A Resolution Length = 164

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Query: 24  NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQPG 81
            LFV LY++++R  D+L    G K  ++++S+ +WW+ + +  G  GY PSNYV  V   
Sbjct: 5   TLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVDSI 64
Query: 82  ERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPL 133
           +        L   D E  L        +  G+   G  +IR  E  +G   L
Sbjct: 65  QAEEWYFGKLGRKDAERQL--------LSFGNPR-GTFLIRESETTKGAYSL 107

>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene Tyrosine Kinase Complexed With The Synthetic Peptide P2l Corresponding To Residues 91-104 Of The P85 Subunit Of Pi3- Kinase, Family Of 25 Structures Length = 69

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
           LFV LY++++R  D+L    G K  ++++S+ +WW+ + +  G  GY PSNYV  V
Sbjct: 6  TLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 62

>pdb|1AZG|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene Tyrosine Kinase Kinase Complexed With The Synthetic Peptide P2l Corresponding To Residues 91-104 Of The P85 Subunit Of Pi3-Kinase, Minimized Average (Probmap) Structure Length = 67

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
           LFV LY++++R  D+L    G K  ++++S+ +WW+ + +  G  GY PSNYV  V
Sbjct: 4  TLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 60

>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter Molecule 1 Stam-1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4479e Length = 72

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
           +Y+F++   +EL  K G  +TV+D SD NWWKG+    +G FPSN+V
Sbjct: 22 AIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFV 69

>pdb|2VVK|A Chain A, Grb2 Sh3c (1) Length = 56

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 30/51 (58%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
           L++F  +   EL  + G  + V+D SD NWWKG C G+ G FP NYV  V
Sbjct: 5  ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPV 55

>pdb|2VWF|A Chain A, Grb2 Sh3c (2) Length = 58

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 30/51 (58%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
           L++F  +   EL  + G  + V+D SD NWWKG C G+ G FP NYV  V
Sbjct: 7  ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTAV 57

>pdb|3UA6|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain Length = 64

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
           LFV LY++++R  D+L    G K  ++++S+ +WW+ + +  G  GY PSNYV  V
Sbjct: 6  TLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 62

>pdb|1AVZ|C Chain C, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain Length = 57

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
           LFV LY++++R  D+L    G K  ++++S+ +WW+ + +  G  GY PSNYV  V
Sbjct: 1  TLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 57

>pdb|1FYN|A Chain A, Phosphotransferase Length = 62

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
           LFV LY++++R  D+L    G K  ++++S+ +WW+ + +  G  GY PSNYV  V
Sbjct: 5  TLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 61

>pdb|1M27|C Chain C, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX Length = 61

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
           LFV LY++++R  D+L    G K  ++++S+ +WW+ + +  G  GY PSNYV  V
Sbjct: 2  TLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 58

>pdb|1GRI|A Chain A, Grb2 Length = 217

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 13/122 (10%)
Query: 27  VVLYNFKSRHADELDLKPGYKVTVIDTS-DQNWWKGKCMGRVGYFPSNYV-IKVQP---G 81
           +  Y+FK+   DEL  K G  + V++   DQNW+K +  G+ G+ P NY+ +K  P   G
Sbjct: 4   IAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPWFFG 63
Query: 82  ERPLQVTHNLQIADGESGLSLLRD--------QIVIQIGDEVDGMVMIRNGENRQGVCPL 133
           + P      +       G  L+R+         + ++ G++V    ++R+G  +  +  +
Sbjct: 64  KIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVV 123
Query: 134 KY 135
           K+
Sbjct: 124 KF 125

>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal Sh3 Domain Complexed With A Ligand Peptide (Nmr, Minimized Mean Structure) Length = 59

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 30/51 (58%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
           L++F  +   EL  + G  + V+D SD NWWKG C G+ G FP NYV  V
Sbjct: 7  ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPV 57

>pdb|1SHF|A Chain A, Crystal Structure Of The Sh3 Domain In Human Fyn; Comparison Of The Three-Dimensional Structures Of Sh3 Domains In Tyrosine Kinases And Spectrin Length = 59

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
           LFV LY++++R  D+L    G K  ++++S+ +WW+ + +  G  GY PSNYV  V
Sbjct: 2  TLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 58

>pdb|2CUB|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Cytoplasmic Protein Nck1 Length = 88

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 11/80 (13%)
Query: 6  PLITLHDLTQKAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG 65
          P   L+DL   A+         V +N+ +   DEL L  G KV V++     WW+G   G
Sbjct: 9  PGERLYDLNMPAY---------VKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNG 59
Query: 66 RVGYFPSNYVIKVQPGERPL 85
          +VG+FPSNYV   + G+ PL
Sbjct: 60 QVGWFPSNYV--TEEGDSPL 77

>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains Length = 61

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 30/52 (57%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQ 79
           L++F  +   EL  + G  + V+D SD NWWKG C G+ G FP NYV  V 
Sbjct: 7  ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVN 58

>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi Sarcoma Viral (V-Yes) Oncogene Homolog 1 Length = 109

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 24  NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQPG 81
            +FV LY++++R  ++L  K G +  +I+ ++ +WW+ + +  G+ GY PSNYV+     
Sbjct: 28  TIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPADSI 87
Query: 82  ERPLQVTHNLQIADGESGLS 101
           +        +   D ESG S
Sbjct: 88  QAEEWYFGKMGRKDAESGPS 107

>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l Length = 283

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%)
Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          +Y++ +++ DEL    G  + V++  D +WWKG+  G+VG FPSNYV
Sbjct: 8  MYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYV 54

>pdb|1X69|A Chain A, Solution Structures Of The Sh3 Domain Of Human Src Substrate Cortactin Length = 79

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 32/55 (58%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG 81
          V LY++++   DE+   P   +T I+  D  WW+G C GR G FP+NYV   Q G
Sbjct: 21 VALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQSG 75

>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And Amap1- Peptide Complex Length = 66

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          V LY++++   DE+   P   +T I+  D  WW+G C GR G FP+NYV
Sbjct: 14 VALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYV 62

>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal Transducing Adaptor Molecule 2 Length = 88

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
           LY+F++   +EL  K G  + V+D SD NWWKG+    +G FPSN+V
Sbjct: 22 ALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFV 69

>pdb|3ULR|B Chain B, Lysozyme Contamination Facilitates Crystallization Of A Hetero- Trimericcortactin:arg:lysozyme Complex Length = 65

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          + LY++++   DE+   P   +T I+  D  WW+G C GR G FP+NYV
Sbjct: 13 IALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYV 61

>pdb|2DM1|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Protein Vav-2 Length = 73

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVID--TSDQNWWKGKCMGRVGYFPSNYV 75
          V  YNF +R   EL L+ G  V +      DQ WWKG+  GR+G+FPS YV
Sbjct: 11 VARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYV 61

>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain Length = 295

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQ 86
          + +Y++ + + DEL    G  + V++  D +WW+G+  G  G FPSNYV      +   Q
Sbjct: 22 IAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDSDPSQQ 81
Query: 87 VTHNLQIAD 95
             +LQ  D
Sbjct: 82 WCADLQTLD 90

>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A Ubpy-Derived Peptide Length = 62

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVI 76
           LY+F++   +EL  K G  +TV+D SD NWW+G+     G FPSN+V 
Sbjct: 10 ALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVT 58

>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE Nucleotide Exchange Factor(Gef) 6 Length = 76

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 30 YNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERP 84
          +NFK  + DEL +  G  + V    +  WW+G   GR G+FPSNYV +++  ER 
Sbjct: 17 FNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSSERS 71

>pdb|1OEB|A Chain A, MonaGADS SH3C DOMAIN Length = 62

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
           LY+F++   DEL  + G  V V+D+S+ +WW G+   ++G FP+NYV
Sbjct: 10 ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 57

>pdb|1UTI|A Chain A, MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE Length = 58

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
           LY+F++   DEL  + G  V V+D+S+ +WW G+   ++G FP+NYV
Sbjct: 6  ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 53

>pdb|1YNZ|A Chain A, Sh3 Domain Of Yeast Pin3 Length = 58

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
           LY F  +   +L LKPG KV +++     W+KG C GR G FP+NYV
Sbjct: 7  ALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYV 54

>pdb|2JS0|A Chain A, Solution Structure Of Second Sh3 Domain Of Adaptor Nck Length = 61

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIK 77
          V +N+ +   DEL L  G KV V++     WW+G   G+VG+FPSNYV +
Sbjct: 9  VKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTE 58

>pdb|1H3H|A Chain A, Structural Basis For Specific Recognition Of An Rxxk-Containing Slp-76 Peptide By The Gads C-Terminal Sh3 Domain Length = 60

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
           LY+F++   DEL  + G  V V+D+S+ +WW G+   ++G FP+NYV
Sbjct: 8  ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 55

>pdb|2D0N|A Chain A, Crystal Structure Of The C-Terminal Sh3 Domain Of The Adaptor Protein Gads In Complex With Slp-76 Motif Peptide Reveals A Unique Sh3-Sh3 Interaction Length = 59

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
           LY+F++   DEL  + G  V V+D+S+ +WW G+   ++G FP+NYV
Sbjct: 7  ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 54

>pdb|2D8J|A Chain A, Solution Structure Of The Sh3 Domain Of Fyn-Related Kinase Length = 77

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 9/61 (14%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWW-------KGKCMGR--VGYFPSNYVI 76
          FV L+++++R A++L  + G K+ V+DTS + WW       KG  +G+   GY PSNYV 
Sbjct: 10 FVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVA 69
Query: 77 K 77
          +
Sbjct: 70 E 70

>pdb|3H0F|A Chain A, Crystal Structure Of The Human Fyn Sh3 R96w Mutant Length = 73

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
           LFV LY++++   D+L    G K  ++++S+ +WW+ + +  G  GY PSNYV  V
Sbjct: 16 TLFVALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 72

>pdb|3H0H|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form I Length = 73

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
           LFV LY++++   D+L    G K  ++++S+ +WW+ + +  G  GY PSNYV  V
Sbjct: 16 TLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 72

>pdb|4D8D|A Chain A, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant Length = 58

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
           LFV LY++++   D+L    G K  ++++S+ +WW+ + +  G  GY PSNYV  V
Sbjct: 2  TLFVALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 58

>pdb|2HDA|A Chain A, Yes Sh3 Domain Length = 64

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
          +FV LY++++R  ++L  K G +  +I+ ++ +WW+ + +  G+ GY PSNYV
Sbjct: 7  IFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKNGYIPSNYV 59

>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide Length = 64

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 30 YNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
          +NF+  + DEL    G  + V    +  WW+G   GR G+FPSNYV +++P
Sbjct: 13 FNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREIKP 63

>pdb|1EFN|A Chain A, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3 Domain Length = 59

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
          LFV LY++++   D+L    G K  ++++S+ +WW+ + +  G  GY PSNYV  V
Sbjct: 2  LFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 57

>pdb|2FRW|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Adaptor Protein Nck2 Length = 57

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIK 77
          V + + +   DEL L  G +VTV++     WW+G   G++G+FPSNYV++
Sbjct: 5  VKFAYVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYVLE 54

>pdb|4E6R|A Chain A, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2) From Homo Sapiens At 2.20 A Resolution Length = 58

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIK 77
          V + + +   DEL L  G +VTV +     WW+G   G++G+FPSNYV++
Sbjct: 6  VXFAYVAEREDELSLVXGSRVTVXEXCSDGWWRGSYNGQIGWFPSNYVLE 55

>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain (Minimized Average Structure) Length = 62

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 21 LPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          + T     L++F  + + EL  K G  +T+I+  D NWW+G+   R G FPSNYV
Sbjct: 2  METKFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 56

>pdb|2D8H|A Chain A, Solution Structure Of The Sh3 Domain Of Hypothetical Protein Sh3yl1 Length = 80

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQ--NWWKGKCMGRVGYFPSNYVI 76
            LY+F+ +   +L+ + G ++TVI  +D   +WW+GK  G+ G FP+NYV 
Sbjct: 21 TALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVT 72

>pdb|3FJ5|A Chain A, Crystal Structure Of The C-Src-Sh3 Domain Length = 57

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
          FV LY+++SR   +L  K G ++ +++ ++ +WW    +  GR GY PSNYV
Sbjct: 3  FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGRTGYIPSNYV 54

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 26  FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
           FV LY+++SR   +L  K G ++ +++ ++ +WW    +  G+ GY PSNYV
Sbjct: 88  FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 139

>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation And Of Sequence Specificity In Sh3 Domains Length = 58

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          T     L++F  + + EL  K G  +T+I+  D NWW+G+   R G FPSNYV
Sbjct: 2  TKFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54

>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor Length = 60

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          T     L++F  + + EL  K G  +T+I+  D NWW+G+   R G FPSNYV
Sbjct: 2  TKFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54

>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide Length = 58

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQ 79
          +V ++++++H DEL +  G  +T I   D  WW+G+  GR G FP N+V +++
Sbjct: 5  IVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREIK 57

>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From Alpha- Pak Length = 65

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 30 YNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
          +NF+  + DEL    G  + V    +  WW+G   GR G+FPSNYV +V+ 
Sbjct: 15 FNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSNYVREVKA 65

>pdb|2KBT|A Chain A, Attachment Of An Nmr-Invisible Solubility Enhancement Tag (Inset) Using A Sortase-Mediated Protein Ligation Method Length = 142

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 30 YNFKSRHADELDLKPGYKVTVIDT-SDQNWWKGKCMGRVGYFPSNYV 75
          Y+F +R   EL LK G  + +++    Q WW+G+  GR+G+FPSNYV
Sbjct: 12 YDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYV 58

>pdb|2CUC|A Chain A, Solution Structure Of The Sh3 Domain Of The Mouse Hypothetical Protein Sh3rf2 Length = 70

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQ 79
          N+FV L+ + +   +ELDL+ G  + V+      W KG  +  GR G FPS+YVI V 
Sbjct: 8  NMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVS 65

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
          FV LY+++SR   +L  K G ++ +++ ++ +WW    +  G+ GY PSNYV
Sbjct: 5  FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
          FV LY+++SR   +L  K G ++ +++ ++ +WW    +  G+ GY PSNYV
Sbjct: 5  FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
          FV LY+++SR   +L  K G ++ +++ ++ +WW    +  G+ GY PSNYV
Sbjct: 5  FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
          FV LY+++SR   +L  K G ++ +++ ++ +WW    +  G+ GY PSNYV
Sbjct: 6  FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 57

>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of Intersectin 2 (Kiaa1256) Length = 98

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          P    + +Y++ + + DEL    G  + V++  D +WW+G+  G  G FPSNYV
Sbjct: 33 PVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYV 86

>pdb|1PRL|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain: Development Of A General Model For Sh3-Ligand Interactions Length = 64

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
          FV LY+++SR   +L  K G ++ +++ ++ +WW    +  G+ GY PSNYV
Sbjct: 10 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 61

>pdb|3CQT|A Chain A, N53i V55l Mutant Of Fyn Sh3 Domain Length = 79

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
          + LF  LY++++R  D+L    G K  ++++S+ +WW+ + +  G  GY PS Y+  V
Sbjct: 5  STLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPV 62

>pdb|4HXJ|A Chain A, Crystal Structure Of Sh3:rgt Complex Length = 60

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
          +  FV LY+++SR   +L  K G ++ +++ ++ +WW    +  G+ GY PSNYV
Sbjct: 2  STTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56

>pdb|1QWE|A Chain A, C-Src Sh3 Domain Complexed With Ligand App12 Length = 64

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
          FV LY+++SR   +L  K G ++ +++ ++ +WW    +  G+ GY PSNYV
Sbjct: 10 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 61

>pdb|4AG2|C Chain C, Human Chymase - Fynomer Complex Length = 84

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQP- 80
           LFV LY++ +    +L    G K  ++D    +WW+ + +  G  GY PSNYV  V   
Sbjct: 7  TLFVALYDYNATRWTDLSFHKGEKFQILDGDSGDWWEARSLTTGETGYIPSNYVAPVDSI 66
Query: 81 -GERPLQVTHNL 91
           GE+ L    +L
Sbjct: 67 QGEQKLISEEDL 78

>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin Length = 79

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          L   LY+F++R  DEL+L+ G  V + +  ++ WW G   G+ G+FP+ YV
Sbjct: 9  LCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYV 59

>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange Factor Length = 61

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 30 YNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
          +NF+  + DEL    G  + V    +  WW+G   GR G+FPSNYV ++
Sbjct: 13 FNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI 61

>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain Length = 60

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQ--NWWKGKCMGRVGYFPSNYV 75
          V LYNF      +L  K G  +T++  SD   +WW G+  G+ G FP+NYV
Sbjct: 7  VALYNFAGEQPGDLAFKKGDVITILKKSDSQNDWWTGRTNGKEGIFPANYV 57

>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In Complex With A High Affinity Peptide From Pak2 Length = 59

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 30 YNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
          +NF+  + DEL    G  + V    +  WW+G   GR G+FPSNYV ++
Sbjct: 11 FNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI 59

>pdb|1UHC|A Chain A, Solution Structure Of Rsgi Ruh-002, A Sh3 Domain Of Kiaa1010 Protein [homo Sapiens] Length = 79

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVID----TSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
          ++  +Y FK+R+ +EL +    K+ +++    T +  WW  +  G+ GY PSNY+ K + 
Sbjct: 15 VYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTES 74
Query: 81 G 81
          G
Sbjct: 75 G 75

>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 12/111 (10%)
Query: 25  LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG--RVGYFPSNYVIKVQPGE 82
           + V LY++++ H ++L  + G ++ V++ S + WWK + +   + GY PSNYV +V   E
Sbjct: 4   IVVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVARVDSLE 62
Query: 83  RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPL 133
                   +   D E  L        +  G+ + G  MIR+ E  +G   L
Sbjct: 63  TEEWFFKGISRKDAERQL--------LAPGNML-GSFMIRDSETTKGSYSL 104

>pdb|2L2P|A Chain A, Folding Intermediate Of The Fyn Sh3 A39vN53PV55L FROM NMR RELAXATION Dispersion Experiments Length = 66

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
          + LF  LY++++R  D+L    G K  ++++S+ +WW+ + +  G  GY PS Y+  V
Sbjct: 7  STLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEVRSLTTGETGYIPSPYLAPV 64

>pdb|2EW3|A Chain A, Solution Structure Of The Sh3 Domain Of Human Sh3gl3 Length = 68

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
          LY+F+  +  EL  K G  +T+ +  D+NW++G   G  G+FP NYV  + P
Sbjct: 9  LYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVIVP 60

>pdb|3NHN|A Chain A, Crystal Structure Of The Src-Family Kinase Hck Sh3-Sh2-Linker Regulatory Region Length = 193

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 12/111 (10%)
Query: 25  LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG--RVGYFPSNYVIKVQPGE 82
           + V LY++++ H ++L  + G ++ V++ S + WWK + +   + GY PSNYV +V   E
Sbjct: 11  IVVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVARVDSLE 69
Query: 83  RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPL 133
                   +   D E  L    + +         G  MIR+ E  +G   L
Sbjct: 70  TEEWFFKGISRKDAERQLLAPGNML---------GSFMIRDSETTKGSYSL 111

>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae Hypothetical 40.4 Kda Protein At 1.39 A Resolution Length = 60

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQ--NWWKGKCMGRVGYFPSNYV 75
          V LY+F    + +L  + G  +T++  SD   +WW G+  GR G FP+NYV
Sbjct: 7  VALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYV 57

>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain Length = 71

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
           LY+F+  +  EL  K G  +T+ +  D+NW++G   G+ G+FP NYV
Sbjct: 16 ALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGQSGFFPINYV 63

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 12/107 (11%)
Query: 25  LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG--RVGYFPSNYVIKVQPGE 82
           + V LY++++ H ++L  + G ++ V++ S + WWK + +   + GY PSNYV +V   E
Sbjct: 10  IVVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVARVDSLE 68
Query: 83  RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQG 129
                   +   D E  L        +  G+ + G  MIR+ E  +G
Sbjct: 69  TEEWFFKGISRKDAERQL--------LAPGNML-GSFMIRDSETTKG 106

>pdb|2KRN|A Chain A, High Resolution Structure Of The Second Sh3 Domain Of Cd2ap Length = 60

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 34/52 (65%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQ 79
          VL+++  ++ DEL+L  G  + VI+  ++ WW G    ++G FPSN+V +++
Sbjct: 9  VLFDYSPQNEDELELIVGDVIDVIEEVEEGWWSGTLNNKLGLFPSNFVKELE 60

>pdb|3THK|A Chain A, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To The Chain C- Terminal Length = 73

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 38/58 (65%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
          L + LY+++ +   E+ +K G  +T++++++++WWK +   R G+ P+ YV K+ P +
Sbjct: 7  LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQ 64

>pdb|1UUE|A Chain A, A-Spectrin Sh3 Domain (V44t, D48g Mutant) Length = 62

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 37/54 (68%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
          L + LY+++ +   E+ +K G  +T++++++++WWK +  GR G+ P+ YV K+
Sbjct: 8  LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKTEVNGRQGFVPAAYVKKL 61

>pdb|3NGP|A Chain A, High Resolution Structure Of Alpha-Spectrin Sh3 Domain Mutant With A Redesigned Core Length = 62

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 38/54 (70%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
          L +VLY+++ +   EL +K G  +T++++++++WWK +  GR G+ P+ Y+ K+
Sbjct: 8  LVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKKL 61

>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3- Containing Grb2-Like Protein 2 Length = 73

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
           LY+F+  +  EL  K G  +T+ +  D+NW++G   G  G+FP NYV
Sbjct: 12 ALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYV 59

>pdb|2O2O|A Chain A, Solution Structure Of Domain B From Human Cin85 Protein Length = 92

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 37/63 (58%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQV 87
          V +++  ++ DEL+LK G  + V+   ++ WW+G   G+ G FPSN++ ++      L +
Sbjct: 23 VAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESDELGI 82
Query: 88 THN 90
          + +
Sbjct: 83 SQD 85

>pdb|4AFQ|C Chain C, Human Chymase - Fynomer Complex Length = 85

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTS-DQNWWKGKCM--GRVGYFPSNYVIKVQP 80
           LFV LY++++    +L    G K  ++D S   +WW+ + +  G  GY PSNYV  V  
Sbjct: 7  TLFVALYDYQADRWTDLSFHKGEKFQILDASPPGDWWEARSLTTGETGYIPSNYVAPVDS 66
Query: 81 --GERPLQVTHNL 91
            GE+ L    +L
Sbjct: 67 IQGEQKLISEEDL 79

>pdb|3M0P|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph 4. Length = 62

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 37/54 (68%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
          L + LY+++ +  DE+ +K G  +T++++++++WWK +   R G+ P+ YV K+
Sbjct: 8  LVLALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 61

>pdb|2YDL|A Chain A, Crystal Structure Of Sh3c From Cin85 Length = 69

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVI--DTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
          V++ +++++ DEL +K G  VT+I  D  D  WW+G+  GR G FP N+V  + P E
Sbjct: 7  VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPLE 63

>pdb|3M0S|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph 7 Length = 57

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 37/54 (68%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
          L + LY+++ +  DE+ +K G  +T++++++++WWK +   R G+ P+ YV K+
Sbjct: 3  LVLALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 56

>pdb|4AFZ|C Chain C, Human Chymase - Fynomer Complex Length = 84

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQP- 80
           LFV LY++ +    +L    G K  +++    +WW+ + +  G  GY PSNYV  V   
Sbjct: 7  TLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVDSI 66
Query: 81 -GERPLQVTHNL 91
           GE+ L    +L
Sbjct: 67 QGEQKLISEEDL 78

>pdb|4HCK|A Chain A, Human Hck Sh3 Domain, Nmr, 25 Structures Length = 72

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG--RVGYFPSNYVIKV 78
          + V LY++++ H ++L  + G ++ V++ S + WWK + +   + GY PSNYV +V
Sbjct: 11 IVVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVARV 65

>pdb|1BK2|A Chain A, A-Spectrin Sh3 Domain D48g Mutant Length = 57

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 37/54 (68%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
          L + LY+++ +   E+ +K G  +T++++++++WWK +  GR G+ P+ YV K+
Sbjct: 3  LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNGRQGFVPAAYVKKL 56

>pdb|2OI3|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase Sh3 Domain Complexed With An Artificial High Affinity Ligand (Pd1) Length = 86

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG--RVGYFPSNYVIKV 78
          + V LY++++ H ++L  + G ++ V++ S + WWK + +   + GY PSNYV +V
Sbjct: 27 IVVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVARV 81

>pdb|2K6D|A Chain A, Cin85 Sh3-C Domain In Complex With Ubiquitin Length = 62

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVI--DTSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
          V++ +++++ DEL +K G  VT+I  D  D  WW+G+  GR G FP N+V  + P
Sbjct: 8  VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPP 62

>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85 Adapter Protein Length = 73

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVI--DTSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
          V++ +++++ DEL +K G  VT+I  D  D  WW+G+  GR G FP N+V  + P
Sbjct: 14 VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPP 68

>pdb|1E6G|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25i, V53i, V58l Mutant Length = 62

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 37/54 (68%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
          L +VLY+++ +   EL +K G  +T++++++++WWK +   R G+ P+ Y+ K+
Sbjct: 8  LVLVLYDYQEKSPRELTIKKGDILTLLNSTNKDWWKVEVNDRQGFIPAAYLKKL 61

>pdb|1BU1|A Chain A, Src Family Kinase Hck Sh3 Domain Length = 57

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG--RVGYFPSNYVIKV 78
          + V LY++++ H ++L  + G ++ V++ S + WWK + +   + GY PSNYV +V
Sbjct: 2  IVVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVARV 56

>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain Kinase Binding Protein 1 Length = 68

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 31/48 (64%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          V +++  ++ DEL+LK G  + V+   ++ WW+G   G+ G FPSN++
Sbjct: 12 VAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFI 59

>pdb|4GLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo Sapiens] Length = 72

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          V LY F++   +ELD + G K+ ++ T +  W +G   GR G FP  +V
Sbjct: 17 VALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRFV 65

>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3 Domain Length = 73

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
           LY+F+  +  EL  + G  +T+ +  D+NW++G   G+ G+FP +YV
Sbjct: 18 ALYDFEPENDGELGFREGDLITLTNQIDENWYEGXLHGQSGFFPLSYV 65

>pdb|1HD3|A Chain A, A-Spectrin Sh3 Domain F52y Mutant Length = 62

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 36/54 (66%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
          L + LY+++ +   E+ +K G  +T++++++++WWK +   R GY P+ YV K+
Sbjct: 8  LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGYVPAAYVKKL 61

>pdb|1GL5|A Chain A, Nmr Structure Of The Sh3 Domain From The Tec Protein Tyrosine Kinase Length = 67

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYV 75
          + + V +Y+F++  A +L L+ G +  +++ +D +WW+ +   G  GY PSNYV
Sbjct: 2  SEIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYV 55

>pdb|3U23|A Chain A, Atomic Resolution Crystal Structure Of The 2nd Sh3 Domain From Human Cd2ap (Cms) In Complex With A Proline-Rich Peptide From Human Rin3 Length = 65

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 33/52 (63%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQ 79
          VL+ +  ++ DEL+LK G  + + +  ++ WW G    ++G FPSN+V +++
Sbjct: 12 VLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELE 63

>pdb|2DA9|A Chain A, Solution Structure Of The Third Sh3 Domain Of Sh3-Domain Kinase Binding Protein 1 (Regulator Of Ubiquitous Kinase, Ruk) Length = 70

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVI--DTSDQNWWKGKCMGRVGYFPSNYV 75
          V++ +++++ DEL +K G  VT+I  D  D  WW+G+  GR G FP N+V
Sbjct: 12 VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 61

>pdb|3HAJ|A Chain A, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121 Lattice) Length = 486

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 29  LYNFKSRHADELDLKPGYKVTVI-DTSDQNWWKGKC-MGRVGYFPSNYVIKVQ 79
           LY+++ +  DEL  K G ++T + D  +Q W KG+   G+VG +P+NYV  +Q
Sbjct: 434 LYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVEAIQ 486

>pdb|1E7O|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V44i, V58l Mutations Length = 62

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 37/54 (68%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
          L +VLY+++ +   EL +K G  +T++++++++WWK +   R G+ P+ Y+ K+
Sbjct: 8  LVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNDRQGFVPAAYLKKL 61

>pdb|2CDT|A Chain A, Alpha-Spectrin Sh3 Domain A56s Mutant Length = 62

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 37/54 (68%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
          L + LY+++ +   E+ +K G  +T++++++++WWK +   R G+ P++YV K+
Sbjct: 8  LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPASYVKKL 61

>pdb|2XMF|A Chain A, Myosin 1e Sh3 Length = 60

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
           LY + ++  DEL       + +I      WW G+  G+ G FP+NYV K+
Sbjct: 10 ALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTKI 60

>pdb|2FEI|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Cms Protein Length = 65

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          VL+ +  ++ DEL+LK G  + + +  ++ WW G    ++G FPSN+V
Sbjct: 6  VLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFV 53

>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain Complexed With A Ten-Residue Peptide Derived From Sos Direct Refinement Against Noes, J-Couplings, And 1h And 13c Chemical Shifts, 15 Structures Length = 74

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTS-DQNWWKGKCMGRVGYFPSNYV 75
          +  Y+FK+   DEL  K G  + V++   DQNW+K +  G+ G+ P NY+
Sbjct: 13 IAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYI 62

>pdb|1QKX|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47a Mutant In The Distal Loop Length = 62

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 36/54 (66%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
          L + LY+++ +   E+ +K G  +T++++++++WWK +   R G+ P+ YV K+
Sbjct: 8  LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVADRQGFVPAAYVKKL 61

>pdb|3REB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3 Domain Length = 90

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG--RVGYFPSNYVIKV 78
          + V LY++ S   D+L  + G ++ V++ S + WWK + +   + GY PSNYV +V
Sbjct: 5  IVVALYDYVSWSPDDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVARV 59

>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Vinexin And Its Interaction With The Peptides From Vinculin Length = 65

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 30 YNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          ++F+++   EL L+ G  V +    D+NW +G+  GR+G FP+NYV
Sbjct: 8  FDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYV 53

>pdb|2RF0|A Chain A, Crystal Structure Of Human Mixed Lineage Kinase Map3k10 Sh3 Domain Length = 89

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 6/57 (10%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVID-----TSDQNWWKGKC-MGRVGYFPSNYV 75
          ++  ++++++   +EL L+ G +V V+      + D+ WW G+   GRVG FPSNYV
Sbjct: 31 VWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYV 87

>pdb|2DL3|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Sorbin And Sh3 Domain-Containing Protein 1 Length = 68

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 30 YNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          ++FK++   EL L+ G  V +    DQNW++G+  GRVG FP  Y+
Sbjct: 14 FDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYI 59

>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 Length = 58

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
           LY++ ++  DEL  K G  + V       WW+G+  G+ G+ P+NYV
Sbjct: 8  ALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYV 55

>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 Length = 59

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
           LY++ ++  DEL  K G  + V       WW+G+  G+ G+ P+NYV
Sbjct: 9  ALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYV 56

>pdb|2F2V|A Chain A, Alpha-Spectrin Sh3 Domain A56g Mutant Length = 62

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 36/54 (66%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
          L + LY+++ +   E+ +K G  +T++++++++WWK +   R G+ P+ YV K+
Sbjct: 8  LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAGYVKKL 61

>pdb|2F2W|A Chain A, Alpha-Spectrin Sh3 Domain R21a Mutant Length = 62

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 36/54 (66%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
          L + LY+++ +   E+ +K G  +T++++++++WWK +   R G+ P+ YV K+
Sbjct: 8  LVLALYDYQEKSPAEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 61

>pdb|2LJ3|A Chain A, Pfbd: High-Throughput Strategy Of Backbone Fold Determination For Small Well-Folded Proteins In Less Than A Day Length = 63

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 36/54 (66%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
          L + LY+++ +   E+ +K G  +T++++++++WWK +   R G+ P+ YV K+
Sbjct: 8  LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 61

>pdb|1M8M|A Chain A, Solid-State Mas Nmr Structure Of The A-Spectrin Sh3 Domain Length = 62

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 36/54 (66%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
          L + LY+++ +   E+ +K G  +T++++++++WWK +   R G+ P+ YV K+
Sbjct: 8  LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 61

>pdb|1AZE|A Chain A, Nmr Structure Of The Complex Between The C32s-Y7v Mutant Of The Nsh3 Domain Of Grb2 With A Peptide From Sos, 10 Structures Length = 56

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 31 NFKSRHADELDLKPGYKVTVI-DTSDQNWWKGKCMGRVGYFPSNYV 75
          +FK+   DEL  K G  + V+ + SDQNW+K +  G+ G+ P NY+
Sbjct: 8  DFKATADDELSFKRGDILKVLNEESDQNWYKAELNGKDGFIPKNYI 53

>pdb|2F2X|A Chain A, Alpha-Spectrin Sh3 Domain R21g Mutant Length = 62

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 36/54 (66%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
          L + LY+++ +   E+ +K G  +T++++++++WWK +   R G+ P+ YV K+
Sbjct: 8  LVLALYDYQEKSPGEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 61

>pdb|1E6H|A Chain A, A-Spectrin Sh3 Domain A11v, M25i, V44i, V58l Mutants Length = 62

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 37/54 (68%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
          L +VLY+++ +   E+ +K G  +T++++++++WWK +   R G+ P+ Y+ K+
Sbjct: 8  LVLVLYDYQEKSPREVTIKKGDILTLLNSTNKDWWKIEVNDRQGFVPAAYLKKL 61

>pdb|1LCK|A Chain A, Sh3-Sh2 Domain Fragment Of Human P56-Lck Tyrosine Kinase Complexed With The 10 Residue Synthetic Phosphotyrosyl Peptide Tegqpyqpqpa Length = 175

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 12/116 (10%)
Query: 21  LPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
           L  NL + L++++  H  +L  + G ++ +++ S + WWK + +  G+ G+ P N+V K 
Sbjct: 10  LQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAKA 68
Query: 79  QPGERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLK 134
              E       NL   D E  L        +  G+   G  +IR  E+  G   L 
Sbjct: 69  NSLEPEPWFFKNLSRKDAERQL--------LAPGN-THGSFLIRESESTAGSFSLS 115

>pdb|1PWT|A Chain A, Thermodynamic Analysis Of Alpha-Spectrin Sh3 And Two Of Its Circular Permutants With Different Loop Lengths: Discerning The Reasons For Rapid Folding In Proteins Length = 61

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 36/54 (66%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
          L + LY+++ +   E+ +K G  +T++++++++WWK +   R G+ P+ YV K+
Sbjct: 7  LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 60

>pdb|1H8K|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V53i, V58l Mutant Length = 62

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 37/55 (67%)
Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
           L +VLY+++ +   E+ +K G  +T++++++++WWK +   R G+ P+ Y+ K+
Sbjct: 7  ELVLVLYDYQEKSPREVTVKKGDILTLLNSTNKDWWKVEVDDRQGFIPAAYLKKL 61

>pdb|3REA|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3 Domain Length = 61

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG--RVGYFPSNYVIKV 78
          + V LY++ S   D+L  + G ++ V++ S + WWK + +   + GY PSNYV +V
Sbjct: 5  IVVALYDYVSWSPDDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVARV 59

>pdb|4D8K|A Chain A, Crystal Structure Of A Sh3-Sh2 Domains Of A Lymphocyte-Specific Protein Tyrosine Kinase (Lck) From Homo Sapiens At 2.36 A Resolution Length = 175

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 12/116 (10%)
Query: 21  LPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
           L  NL + L++++  H  +L  + G ++ +++ S + WWK + +  G+ G+ P N+V K 
Sbjct: 10  LQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAKA 68
Query: 79  QPGERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLK 134
              E       NL   D E  L        +  G+   G  +IR  E+  G   L 
Sbjct: 69  NSLEPEPWFFKNLSRKDAERQL--------LAPGN-THGSFLIRESESTAGSFSLS 115

>pdb|1QKW|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47g Mutant In The Distal Loop Length = 62

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 36/54 (66%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
          L + LY+++ +   E+ +K G  +T++++++++WWK +   R G+ P+ YV K+
Sbjct: 8  LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVGDRQGFVPAAYVKKL 61

>pdb|1NEG|A Chain A, Crystal Structure Analysis Of N-And C-Terminal Labeled Sh3- Domain Of Alpha-Chicken Spectrin Length = 83

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 36/54 (66%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
          L + LY+++ +   E+ +K G  +T++++++++WWK +   R G+ P+ YV K+
Sbjct: 19 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 72

>pdb|1X27|A Chain A, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of P130cas Length = 167

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 24  NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQPG 81
           NL + L++++  H  +L  + G ++ +++ S + WWK + +  G+ G+ P N+V K    
Sbjct: 5   NLVIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAKANSL 63
Query: 82  ERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLK 134
           E       NL   D E  L        +  G+   G  +IR  E+  G   L 
Sbjct: 64  EPEPWFFKNLSRKDAERQL--------LAPGN-THGSFLIRESESTAGSFSLS 107

>pdb|3I9Q|A Chain A, Crystal Structure Of The Triple Mutant S19g-P20d-R21s Of Alpha Spectrin Sh3 Domain Length = 57

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 36/54 (66%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
          L + LY+++ +   E+ +K G  +T++++++++WWK +   R G+ P+ YV K+
Sbjct: 3  LVLALYDYQEKGDSEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 56

>pdb|1AWW|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, 42 Structures Length = 67

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSNYVIKVQ 79
          V LY++   +A++L L+ G +  +++ S+  WW+ +   G+ GY PSNYV + +
Sbjct: 12 VALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE 65

>pdb|1QLY|A Chain A, Nmr Study Of The Sh3 Domain From Bruton's Tyrosine Kinase, 20 Structures Length = 58

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSNYVIKVQ 79
          V LY++   +A++L L+ G +  +++ S+  WW+ +   G+ GY PSNYV + +
Sbjct: 5  VALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE 58

>pdb|2DLM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Vinexin Length = 68

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 30 YNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          ++F+++   EL L+ G  V +    D+NW +G+  GR+G FP+NYV
Sbjct: 14 FDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYV 59

>pdb|4ESR|A Chain A, Molecular And Structural Characterization Of The Sh3 Domain Of Ahi-1 In Regulation Of Cellular Resistance Of Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine Kinase Inhibitors Length = 69

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 18 HRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYV 75
          H++      V LY++ +  +DEL +  G  + V    +++WW G    G+ GYFP+N+V
Sbjct: 1  HQVDTAPTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHV 59

>pdb|2JTE|A Chain A, Third Sh3 Domain Of Cd2ap Length = 64

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVI--DTSDQNWWKGKCMGRVGYFPSNYVIKVQ 79
           L+ +   + DEL  + G  + +I  +T +  WWKG+  G+ G FP N+ +++ 
Sbjct: 11 TLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQIS 64

>pdb|2RMO|A Chain A, Solution Structure Of Alpha-Spectrin_sh3-Bergerac From Chicken Length = 70

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 8/62 (12%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWK--------GKCMGRVGYFPSNYVI 76
          L + LY+++ +   E+ +K G  +T++++++++WWK        GK   R G+ P+ YV 
Sbjct: 8  LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKATANGKTYERQGFVPAAYVK 67
Query: 77 KV 78
          K+
Sbjct: 68 KL 69

>pdb|2ROT|A Chain A, Structure Of Chimeric Variant Of Sh3 Domain- Shh Length = 70

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 8/62 (12%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWK--------GKCMGRVGYFPSNYVI 76
          L + LY+++ +   E+ +K G  +T++++++++WWK        GK   R G+ P+ YV 
Sbjct: 8  LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVK 67
Query: 77 KV 78
          K+
Sbjct: 68 KL 69

>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2 (Abelson Interactor 2) Length = 78

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQ 79
          V +Y++     DEL  + G  + VI  +D  W++G   G  G FP NYV  + 
Sbjct: 21 VAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESIS 73

>pdb|2OAW|A Chain A, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin Sh3 Length = 65

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 8/62 (12%)
Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWK--------GKCMGRVGYFPSNYVI 76
          L + LY+++ +   E+ +K G  +T++++++++WWK        GK   R G+ P+ YV 
Sbjct: 3  LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVK 62
Query: 77 KV 78
          K+
Sbjct: 63 KL 64

>pdb|1WXT|A Chain A, Solution Structure Of The Sh3 Domain Of Human Hypothetical Protein Flj21522 Length = 68

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSN 73
          VLY F++R+  EL +  G K+ V+D S + W      GR GY PSN
Sbjct: 12 VLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNEAGRSGYIPSN 57

>pdb|1U5S|A Chain A, Nmr Structure Of The Complex Between Nck-2 Sh3 Domain And Pinch-1 Lim4 Domain Length = 71

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDT--SDQNWWKGK-CMGRVGYFPSNYVIKVQPG 81
           LY F S   +EL+ + G  + VI+   +D  WWK K   G+VG  P NYV+ +  G
Sbjct: 11 TLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDG 67

>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Proline- Serine-Threonine Phosphatase-Interacting Protein 1 Length = 69

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQ 79
          +  LY++ +++ DELDL  G  + VI   +  WW  +  G+ G+ P +Y+ K+ 
Sbjct: 11 YRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKLS 64

>pdb|1WX6|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Cytoplasmic Protein Nck2 Length = 91

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDT--SDQNWWKGK-CMGRVGYFPSNYVIKVQPG 81
           LY F S   +EL+ + G  + VI+   +D  WWK K   G+VG  P NYV+ +  G
Sbjct: 22 TLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDG 78

>pdb|2CT3|A Chain A, Solution Structure Of The Sh3 Domain Of The Vinexin Protein Length = 70

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKG--KCMGRVGYFPSNYVIKV 78
          +  +Y ++ ++ DEL+L+ G +V V+   D  W+ G  +   + G FP NYV  V
Sbjct: 10 YRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPV 64

>pdb|2EQI|A Chain A, Solution Structure Of The Sh3 Domain From Phospholipase C, Gamma 2 Length = 69

Iteration: 1
 Score = 38.9 bits (89), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRV-GYFPSNYV 75
           LY++K++ +DEL    G  +  +      WWKG    R+  YFPSNYV
Sbjct: 12 ALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYV 60

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	139
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	2e-23
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	1e-22
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	1e-22
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	3e-22
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	3e-22
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	8e-22
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	1e-21
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	1e-21
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	2e-21
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	2e-21
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	2e-21
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	2e-21
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	3e-21
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	3e-21
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	3e-21
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	5e-21
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	7e-21
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	9e-21
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	1e-20
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	1e-20
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	1e-20
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	1e-20
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	1e-20
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	2e-20
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	2e-20
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	2e-20
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	3e-20
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	3e-20
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	3e-20
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	3e-20
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	6e-20
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	6e-20
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	7e-20
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	7e-20
3u23_A	65	CD2-associated protein; structural genomics, struc	1e-19
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	1e-19
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	1e-19
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	1e-19
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	1e-19
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	1e-19
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	2e-19
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	2e-19
1wxb_A	68	Epidermal growth factor receptor pathway substrate	2e-19
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	3e-19
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	3e-19
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	3e-19
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	3e-19
1awj_A	77	ITK; transferase, regulatory intramolecular comple	3e-19
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	3e-19
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	3e-19
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	3e-19
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	3e-19
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	6e-17
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	3e-19
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	3e-19
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	3e-19
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	4e-19
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	4e-19
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	4e-19
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens} Length	5e-19
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	5e-19
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	6e-19
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	6e-19
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	6e-19
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	8e-19
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	8e-19
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	8e-19
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	9e-19
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	9e-19
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	9e-19
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	1e-18
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	1e-18
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	2e-18
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	2e-18
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	2e-18
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	2e-18
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	2e-18
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	2e-18
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	2e-18
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	2e-18
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	3e-18
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	3e-18
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	3e-18
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	3e-18
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	4e-18
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	4e-18
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	4e-18
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	4e-18
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	5e-18
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	5e-18
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	5e-18
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	6e-18
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	7e-18
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	7e-18
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	8e-18
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	9e-18
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	9e-18
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	1e-17
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	1e-17
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	1e-17
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	1e-17
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	1e-17
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	1e-17
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	1e-17
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	2e-17
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	2e-17
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	2e-17
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	2e-17
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	3e-17
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	3e-17
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	3e-17
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	3e-17
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	3e-17
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	4e-17
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	4e-17
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	4e-17
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	6e-17
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	6e-17
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	8e-17
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	4e-14
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	8e-17
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	9e-17
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	1e-16
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	1e-16
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	1e-16
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	1e-16
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	1e-16
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	2e-16
1i07_A	60	Epidermal growth factor receptor kinase substrate	2e-16
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	2e-16
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	3e-16
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	5e-15
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	6e-10
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	3e-16
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	3e-16
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	3e-16
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	3e-16
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	4e-16
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	5e-16
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	6e-16
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	7e-16
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	7e-16
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	9e-16
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	2e-15
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	2e-06
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	3e-15
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	4e-15
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	4e-12
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	4e-15
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	2e-12
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	4e-15
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	6e-15
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	1e-14
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	1e-14
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	1e-14
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	2e-14
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	2e-14
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	3e-14
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	3e-14
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	5e-14
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	6e-14
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	9e-14
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	1e-13
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	1e-13
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	1e-13
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	2e-13
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	3e-13
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	5e-13
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	5e-13
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	6e-13
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	7e-13
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	8e-13
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	1e-12
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	1e-12
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	2e-12
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	2e-12
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	5e-12
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	1e-11
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	1e-11
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	3e-11
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	1e-10
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	1e-10
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	2e-10
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	2e-10
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	4e-10
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	1e-09
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	1e-09
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	2e-09
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	2e-09
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	3e-09
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	8e-09
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	4e-08
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	8e-08
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	9e-08
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	5e-07
2gtj_A	96	FYN-binding protein; SH3, redox, signaling protein	2e-04

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} Length = 73

 Score = 85.8 bits (213), Expect = 2e-23
 Identities = 17/63 (26%), Positives = 39/63 (61%)

Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGER 83
           L + LY+++ +   E+ +K G  +T++++++++WWK +   R G+ P+ YV K+ P + 
Sbjct: 6  ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQS 65

Query: 84 PLQ 86
            +
Sbjct: 66 ASR 68

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1 Length = 83

 Score = 84.4 bits (209), Expect = 1e-22
 Identities = 16/59 (27%), Positives = 36/59 (61%)

Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
           L + LY+++ +   E+ +K G  +T++++++++WWK +   R G+ P+ YV K+    
Sbjct: 18 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLAAAW 76

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A Length = 79

 Score = 82.8 bits (205), Expect = 3e-22
 Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 2/63 (3%)

Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQ 79
           + LF  LY++++R  D+L    G K  ++++S+ +WW+ + +  G  GY PS Y+  V 
Sbjct: 4  ISTLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVD 63

Query: 80 PGE 82
            +
Sbjct: 64 RLD 66

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 79

 Score = 82.8 bits (205), Expect = 3e-22
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQ----NWWKGKCMGRVGYFPSNYVIK 77
             ++  +Y FK+R+ +EL +    K+ +++  D      WW  +  G+ GY PSNY+ K
Sbjct: 12 GNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRK 71

Query: 78 VQPGERP 84
           + G   
Sbjct: 72 TESGPSS 78

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A Length = 67

 Score = 81.5 bits (202), Expect = 8e-22
 Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSNYVIKVQP 80
               V LY++   +A++L L+ G +  +++ S+  WW+ +   G+ GY PSNYV + + 
Sbjct: 7  ELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAED 66

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 81.7 bits (202), Expect = 1e-21
 Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYVIKVQP 80
             + + LY++++    EL L+   +  ++D+S+ +WW+ +   G  GY PS+Y+++  P
Sbjct: 18 EETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEKSP 77

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 81.1 bits (201), Expect = 1e-21
 Identities = 17/55 (30%), Positives = 24/55 (43%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
            VL+ F     +EL + PG  V V+   + NW      G+ G  P NY+  V  
Sbjct: 10 HRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPVSG 64

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1 Length = 67

 Score = 80.7 bits (200), Expect = 2e-21
 Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSNYVIKVQPG 81
          + + V +Y+F++  A +L L+ G +  +++ +D +WW+ +   G  GY PSNYV   +  
Sbjct: 2  SEIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKKSN 61

Query: 82 E 82
           
Sbjct: 62 N 62

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 81.4 bits (201), Expect = 2e-21
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQ 86
           V +N+ +   DEL L  G KV V++     WW+G   G+VG+FPSNYV +         
Sbjct: 21 YVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTEEGDSPLGDH 80

Query: 87 V 87
          V
Sbjct: 81 V 81

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus} Length = 109

 Score = 81.7 bits (202), Expect = 2e-21
 Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 22  PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQ 79
              +FV LY++++R  ++L  K G +  +I+ ++ +WW+ + +  G+ GY PSNYV+   
Sbjct: 26  GVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPAD 85

Query: 80  PGERPLQVTHNLQIADGESGLS 101
             +        +   D ESG S
Sbjct: 86  SIQAEEWYFGKMGRKDAESGPS 107

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus} Length = 70

 Score = 80.3 bits (199), Expect = 2e-21
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQ 79
          N+FV L+ + +   +ELDL+ G  + V+      W KG  +  GR G FPS+YVI V 
Sbjct: 8  NMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVS 65

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 76

 Score = 80.4 bits (199), Expect = 3e-21
 Identities = 22/57 (38%), Positives = 32/57 (56%)

Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERP 84
            +NFK  + DEL +  G  + V    +  WW+G   GR G+FPSNYV +++  ER 
Sbjct: 15 ARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSSERS 71

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 80.5 bits (199), Expect = 3e-21
 Identities = 14/59 (23%), Positives = 27/59 (45%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPL 85
          V  + +  R A EL  + G  + + + +  +WW+G+  G  G  P  Y+      E+ +
Sbjct: 14 VACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLPAGTEKQV 72

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ... Length = 62

 Score = 80.0 bits (198), Expect = 3e-21
 Identities = 18/55 (32%), Positives = 38/55 (69%)

Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
           L +VLY+++ +   EL +K G  +T++++++++WWK +  GR G+ P+ Y+ K+
Sbjct: 7  ELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKKL 61

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ... Length = 84

 Score = 80.1 bits (198), Expect = 5e-21
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQPG 81
           LFV LY++ +    +L    G K  +++    +WW+ + +  G  GY PSNYV  V   
Sbjct: 7  TLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVDSI 66

Query: 82 E 82
          +
Sbjct: 67 Q 67

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 79.2 bits (196), Expect = 7e-21
 Identities = 25/50 (50%), Positives = 29/50 (58%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          F  LY F+ R  DEL  + G  + + D SD NWWKG   GR G  PSNYV
Sbjct: 10 FRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 59

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens} Length = 58

 Score = 78.3 bits (194), Expect = 9e-21
 Identities = 25/51 (49%), Positives = 30/51 (58%)

Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          +F  LY F+ R  DEL  + G  + + D SD NWWKG   GR G  PSNYV
Sbjct: 5  VFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 55

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A Length = 64

 Score = 78.4 bits (194), Expect = 1e-20
 Identities = 20/54 (37%), Positives = 30/54 (55%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
             +NF+  + DEL    G  + V    +  WW+G   GR G+FPSNYV +++P
Sbjct: 10 RAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREIKP 63

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 71

 Score = 78.5 bits (194), Expect = 1e-20
 Identities = 15/57 (26%), Positives = 31/57 (54%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
          +V +  + S+  DE+  + G  V VI  + + WW  + +G+ G+ P++Y+ K +   
Sbjct: 11 YVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKAKDSG 67

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 78.4 bits (194), Expect = 1e-20
 Identities = 15/54 (27%), Positives = 28/54 (51%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQ 79
          FV + ++ +    +L    G K+ ++  +  +WW G+  G  GY P+N+V K  
Sbjct: 10 FVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGKHS 63

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 78.5 bits (194), Expect = 1e-20
 Identities = 19/58 (32%), Positives = 33/58 (56%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERP 84
            LY+F++R  DEL+L+ G  V + +  ++ WW G   G+ G+FP+ YV ++      
Sbjct: 11 KALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEELPSNAGN 68

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens} Length = 90

 Score = 79.0 bits (195), Expect = 1e-20
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 3/66 (4%)

Query: 21 LPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
          +   + V LY++ S   D+L  + G ++ V++ S   WWK + +   + GY PSNYV +V
Sbjct: 1  MEDIIVVALYDYVSWSPDDLSFQKGDQMVVLEESG-EWWKARSLATRKEGYIPSNYVARV 59

Query: 79 QPGERP 84
            G   
Sbjct: 60 DSGGGT 65

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A 3h0f_A* Length = 73

 Score = 78.5 bits (194), Expect = 2e-20
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
             LFV LY++++   D+L    G K  ++++S+ +WW+ + +  G  GY PSNYV  V
Sbjct: 14 GVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 72

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 78.6 bits (194), Expect = 2e-20
 Identities = 23/58 (39%), Positives = 32/58 (55%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERP 84
            LY+F++   +EL  K G  + V+D SD NWWKG+    +G FPSN+V      E  
Sbjct: 21 RALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTNLNIETE 78

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens} Length = 92

 Score = 78.6 bits (194), Expect = 2e-20
 Identities = 18/66 (27%), Positives = 37/66 (56%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQ 86
           V +++  ++ DEL+LK G  + V+   ++ WW+G   G+ G FPSN++ ++      L 
Sbjct: 22 QVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESDELG 81

Query: 87 VTHNLQ 92
          ++ +  
Sbjct: 82 ISQDEH 87

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 77.7 bits (192), Expect = 3e-20
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERP 84
          +  +++  R A EL  K G  + +   +  +WW+G+  G  G  P  Y+  VQ    P
Sbjct: 13 IAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYI-VVQDTSGP 69

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A Length = 62

 Score = 77.3 bits (191), Expect = 3e-20
 Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 21 LPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIK 77
          L  NL + L++++  H  +L  + G ++ +++ S   WWK + +  G+ G+ P N+V K
Sbjct: 4  LQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSG-EWWKAQSLTTGQEGFIPFNFVAK 61

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 98

 Score = 78.2 bits (193), Expect = 3e-20
 Identities = 19/60 (31%), Positives = 31/60 (51%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQ 86
          + +Y++ + + DEL    G  + V++  D +WW+G+  G  G FPSNYV        P  
Sbjct: 38 IAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDSSGPSS 97

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 77.3 bits (191), Expect = 3e-20
 Identities = 20/54 (37%), Positives = 39/54 (72%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
          V LY F  +  ++L+++PG  +T+++ S+++WWKGK   R+G+FP+N+V ++  
Sbjct: 11 VALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRLSG 64

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 77.0 bits (190), Expect = 6e-20
 Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVID--TSDQNWWKGKCMGRVGYFPSNYVIKVQPGERP 84
          V  YNF +R   EL L+ G  V +      DQ WWKG+  GR+G+FPS YV +      P
Sbjct: 11 VARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEEGIQSGP 70

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens} Length = 65

 Score = 76.5 bits (189), Expect = 6e-20
 Identities = 17/58 (29%), Positives = 33/58 (56%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERP 84
           VL+ +  ++ DEL+LK G  + + +  ++ WW G    ++G FPSN+V +++     
Sbjct: 5  KVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELELEHHH 62

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A Length = 68

 Score = 76.5 bits (189), Expect = 7e-20
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
             ++FK++   EL L+ G  V +    DQNW++G+  GRVG FP  Y+
Sbjct: 11 RAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYI 59

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A Length = 65

 Score = 76.1 bits (188), Expect = 1e-19
 Identities = 17/54 (31%), Positives = 33/54 (61%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
           VL+ +  ++ DEL+LK G  + + +  ++ WW G    ++G FPSN+V +++ 
Sbjct: 11 KVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELEV 64

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens} Length = 58

 Score = 75.7 bits (187), Expect = 1e-19
 Identities = 19/53 (35%), Positives = 34/53 (64%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQ 79
          +V ++++++H DEL +  G  +T I   D  WW+G+  GR G FP N+V +++
Sbjct: 5  IVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREIK 57

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 76.2 bits (188), Expect = 1e-19
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQV 87
          L +F+    DEL  +    +T+I   D++ W G+  G  G+FP+ +V  +    +   +
Sbjct: 13 LLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDERSKEYSI 71

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 75.8 bits (187), Expect = 1e-19
 Identities = 17/56 (30%), Positives = 28/56 (50%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG 81
          +VV+ N+K +   EL L+ G  V VI+ ++  WW        G+ P+ Y+     G
Sbjct: 11 YVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQNSG 66

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A Length = 73

 Score = 75.8 bits (187), Expect = 1e-19
 Identities = 19/56 (33%), Positives = 30/56 (53%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERP 84
          LY+F+  +  EL  K G  +T+ +  D+NW++G   G  G+FP NYV  +      
Sbjct: 13 LYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEILVALPHS 68

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic} Length = 73

 Score = 75.9 bits (187), Expect = 1e-19
 Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERP 84
            L  + +    E+ +K G  +T++++++++WWK +   R G+ P+ YV K+  G   
Sbjct: 4  PPLPPYSAG-GREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGK 60

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 68

 Score = 75.7 bits (187), Expect = 2e-19
 Identities = 17/49 (34%), Positives = 31/49 (63%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
           V +++  ++ DEL+LK G  + V+   ++ WW+G   G+ G FPSN++
Sbjct: 11 QVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFI 59

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus} Length = 71

 Score = 75.8 bits (187), Expect = 2e-19
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQPGER 83
             ++ F  RH DEL+L+    + V   ++  W++   M  G  G FP+ Y I+V     
Sbjct: 9  HRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTKEPE 68

Query: 84 PL 85
           +
Sbjct: 69 HM 70

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 75.4 bits (186), Expect = 2e-19
 Identities = 15/56 (26%), Positives = 27/56 (48%)

Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
             +LY+F +R+A+EL +     + V++   Q W      G+ GY P N + +   
Sbjct: 9  YVKILYDFTARNANELSVLKDEVLEVLEDGRQWWKLRSRSGQAGYVPCNILGEASG 64

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 80

 Score = 75.6 bits (186), Expect = 3e-19
 Identities = 10/64 (15%), Positives = 26/64 (40%)

Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG 81
              ++    ++     E+    G +V V++  +  WW  +     G+ PS+Y++  +  
Sbjct: 7  GATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDENE 66

Query: 82 ERPL 85
          +   
Sbjct: 67 QPDP 70

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A Length = 59

 Score = 75.0 bits (185), Expect = 3e-19
 Identities = 19/49 (38%), Positives = 26/49 (53%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
             +NF+  + DEL    G  + V    +  WW+G   GR G+FPSNYV
Sbjct: 8  RAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 56

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens} Length = 72

 Score = 75.0 bits (185), Expect = 3e-19
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYVIKVQP 80
             + V  +++ ++   ELD+K   ++ ++D S  +WW+ +  M + G+ PSNYV +   
Sbjct: 6  EEVVVVAKFDYVAQQEQELDIKKNERLWLLDDSK-SWWRVRNSMNKTGFVPSNYVERKNS 64

Query: 81 GERP 84
              
Sbjct: 65 ARAA 68

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A Length = 63

 Score = 74.9 bits (185), Expect = 3e-19
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVID-TSDQNWWKGKCMGRVGYFPSNYVIKVQ 79
          NLFV LY+F +   + L +  G K+ V+    +  W + +     G+ PS Y+  V 
Sbjct: 6  NLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPVN 62

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A Length = 77

 Score = 75.5 bits (186), Expect = 3e-19
 Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYV 75
             L + LY++++    EL L+   +  ++D+S+ +WW+ +   G  GY PS+Y+
Sbjct: 19 EETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYL 73

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 62

 Score = 74.9 bits (185), Expect = 3e-19
 Identities = 12/49 (24%), Positives = 29/49 (59%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
            L+++++   ++L+ + G  + V+   ++ W +G+  G+VG FP  +V
Sbjct: 9  EALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFV 57

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1 Length = 62

 Score = 74.9 bits (185), Expect = 3e-19
 Identities = 22/49 (44%), Positives = 31/49 (63%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
            LY+F++   +EL  K G  +TV+D SD NWW+G+     G FPSN+V
Sbjct: 9  RALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFV 57

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 75.1 bits (185), Expect = 3e-19
 Identities = 23/56 (41%), Positives = 32/56 (57%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
          V LY++++   DE+   P   +T I+  D  WW+G C GR G FP+NYV   Q G 
Sbjct: 21 VALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQSGP 76

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 78.5 bits (193), Expect = 3e-19
 Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 11/123 (8%)

Query: 27  VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQ 86
             + +++     E+ L  G  V V++ S+  WW  +   + G+ P++++  +   +    
Sbjct: 15  RAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDETED 74

Query: 87  VTHNLQI----------ADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYL 136
              N             A     +SLL  + V  I   +DG  +IR   +  G  P  YL
Sbjct: 75  PEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKD-DVTGYFPSMYL 133

Query: 137 QEV 139
           Q+ 
Sbjct: 134 QKS 136

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 72.3 bits (177), Expect = 6e-17
 Identities = 20/82 (24%), Positives = 29/82 (35%)

Query: 7   LITLHDLTQKAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGR 66
            +   D T+          +V +  + +   DE+ L  G  V VI      WW  +    
Sbjct: 65  PLDSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDV 124

Query: 67  VGYFPSNYVIKVQPGERPLQVT 88
            GYFPS Y+ K        Q  
Sbjct: 125 TGYFPSMYLQKSGQDVSQAQRQ 146

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A Length = 58

 Score = 74.5 bits (184), Expect = 3e-19
 Identities = 22/47 (46%), Positives = 29/47 (61%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          L++F  +   EL  + G  + V+D SD NWWKG C G+ G FP NYV
Sbjct: 8  LFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens} Length = 69

 Score = 75.0 bits (185), Expect = 3e-19
 Identities = 17/52 (32%), Positives = 30/52 (57%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
            LY++ +++ DELDL  G  + VI   +  WW  +  G+ G+ P +Y+ K+
Sbjct: 12 RALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKL 63

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A Length = 58

 Score = 74.5 bits (184), Expect = 3e-19
 Identities = 22/49 (44%), Positives = 29/49 (59%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
            LY F  +   +L LKPG KV +++     W+KG C GR G FP+NYV
Sbjct: 6  EALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYV 54

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A Length = 69

 Score = 74.6 bits (184), Expect = 4e-19
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVI--DTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERP 84
           V++ +++++ DEL +K G  VT+I  D  D  WW+G+  GR G FP N+V  + P E  
Sbjct: 6  KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPLEHH 65

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus} Length = 120

 Score = 76.1 bits (187), Expect = 4e-19
 Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 4/79 (5%)

Query: 27  VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGR---VGYFPSNYV-IKVQPGE 82
           V LY FK+   DELD+ PG  +++    D  W+  K + R    G  P +YV I      
Sbjct: 7   VTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRIIDLMDP 66

Query: 83  RPLQVTHNLQIADGESGLS 101
                            + 
Sbjct: 67  AKYASVDTYDREQVMKIID 85

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A Length = 86

 Score = 75.2 bits (185), Expect = 4e-19
 Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 3/61 (4%)

Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQPG 81
           + V LY++++ H ++L  + G ++ V++ S   WWK + +   + GY PSNYV +V   
Sbjct: 26 IIVVALYDYEAIHHEDLSFQKGDQMVVLEESG-EWWKARSLATRKEGYIPSNYVARVDSL 84

Query: 82 E 82
          E
Sbjct: 85 E 85

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens} Length = 65

 Score = 74.2 bits (183), Expect = 5e-19
 Identities = 18/48 (37%), Positives = 31/48 (64%)

Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          + ++F+++   EL L+ G  V +    D+NW +G+  GR+G FP+NYV
Sbjct: 6  LKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYV 53

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Length = 72

 Score = 74.3 bits (183), Expect = 5e-19
 Identities = 22/49 (44%), Positives = 32/49 (65%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
            +Y+F++   +EL  K G  +TV+D SD NWWKG+    +G FPSN+V
Sbjct: 21 RAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFV 69

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A Length = 108

 Score = 75.6 bits (186), Expect = 6e-19
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRV---GYFPSNYV-IKVQPGE 82
          +VLY+FK+  ADEL    G  + +    +  W+  K +GR+   G  P  +V I      
Sbjct: 9  IVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIIDIATG 68

Query: 83 RPLQ 86
              
Sbjct: 69 YATG 72

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 74.4 bits (183), Expect = 6e-19
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 9/67 (13%)

Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM---------GRVGYFPS 72
              FV L+++++R A++L  + G K+ V+DTS + WW  + +            GY PS
Sbjct: 6  SGQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPS 65

Query: 73 NYVIKVQ 79
          NYV +  
Sbjct: 66 NYVAEDS 72

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens} Length = 68

 Score = 74.2 bits (183), Expect = 6e-19
 Identities = 20/57 (35%), Positives = 29/57 (50%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
            VLY F++R+  EL +  G K+ V+D S + W      GR GY PSN +  +    
Sbjct: 10 MQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNEAGRSGYIPSNILEPLSGPS 66

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A Length = 58

 Score = 73.7 bits (182), Expect = 8e-19
 Identities = 20/49 (40%), Positives = 32/49 (65%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
            LY+F++   DEL  + G  V V+D+S+ +WW G+   ++G FP+NYV
Sbjct: 5  RALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 53

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 74.4 bits (183), Expect = 8e-19
 Identities = 15/58 (25%), Positives = 31/58 (53%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQ 86
          +++  +    EL  K G  + V+D S+++WW G+     G+FP+++V      E  ++
Sbjct: 16 VWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQEDEVE 73

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A Length = 58

 Score = 73.3 bits (181), Expect = 8e-19
 Identities = 21/49 (42%), Positives = 30/49 (61%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
            L++F  + + EL  K G  +T+I+  D NWW+G+   R G FPSNYV
Sbjct: 6  QALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 69

 Score = 73.8 bits (182), Expect = 9e-19
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
          ++ LY + S    +L    G ++ V    D  WW G    R G FPSNYV     G 
Sbjct: 11 YIALYPYSSVEPGDLTFTEGEEILVTQ-KDGEWWTGSIGDRSGIFPSNYVKPKDSGP 66

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 97

 Score = 74.5 bits (183), Expect = 9e-19
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 9/85 (10%)

Query: 14 TQKAHRLLPTNLFVVLYNFKSRHA--------DELDLKPGYKVTVIDTSDQN-WWKGKCM 64
          T      LP  +FV L+++             +EL  K G  + V    D + +++G+  
Sbjct: 8  TDPGAEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETC 67

Query: 65 GRVGYFPSNYVIKVQPGERPLQVTH 89
           R+G  P N V ++Q  +  +    
Sbjct: 68 ARLGLIPCNMVSEIQADDEEMMDQS 92

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens} Length = 68

 Score = 73.8 bits (182), Expect = 9e-19
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYVIKVQ 79
          ++ + +F ++   +L  K G  + VI+     WW  K   G  G  P  Y+    
Sbjct: 13 YIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEPYS 67

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A Length = 58

 Score = 73.4 bits (181), Expect = 1e-18
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
            LY++ ++  DEL  K G  + V       WW+G+  G+ G+ P+NYV
Sbjct: 7  KALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYV 55

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A Length = 68

 Score = 73.1 bits (180), Expect = 1e-18
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYVIKVQP 80
               +  Y+F++R++ EL +K    + V+D S   WWK +   G+ GY P N +     
Sbjct: 7  ALKWVLCNYDFQARNSSELSVKQRDVLEVLDDSR-KWWKVRDPAGQEGYVPYNILTPYPA 65

Query: 81 GE 82
            
Sbjct: 66 AA 67

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 73.6 bits (181), Expect = 2e-18
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 21 LPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
          L ++   VL ++ S        + G K+ VI   +  WWK   +  GR  Y P   V +V
Sbjct: 15 LDSDFLAVLSDYPSPDISPPIFRRGEKLRVIS-DEGGWWKAISLSTGRESYIPGICVARV 73

Query: 79 QPGE 82
              
Sbjct: 74 SGPS 77

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae} Length = 71

 Score = 73.1 bits (180), Expect = 2e-18
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVI-DTSDQNWWKGKCM--GRVGYFPSNYVIKVQPGE 82
           +V Y+F +   DEL +K G KV ++ D   ++WW  + +  G+ G  P+ ++  V+  +
Sbjct: 9  GIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVRDKK 68

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 73.2 bits (180), Expect = 2e-18
 Identities = 18/54 (33%), Positives = 27/54 (50%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
          V +Y++     DEL  + G  + VI  +D  W++G   G  G FP NYV  +  
Sbjct: 21 VAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESISG 74

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus} Length = 60

 Score = 72.6 bits (179), Expect = 2e-18
 Identities = 16/49 (32%), Positives = 24/49 (48%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
            LY + ++  DEL       + +I      WW G+  G+ G FP+NYV
Sbjct: 9  KALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYV 57

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus} Length = 60

 Score = 72.6 bits (179), Expect = 2e-18
 Identities = 13/49 (26%), Positives = 25/49 (51%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          +  +++  R A EL  K G  + +   + ++WW+G+  G  G  P  Y+
Sbjct: 10 IAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYI 58

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A Length = 60

 Score = 72.5 bits (179), Expect = 2e-18
 Identities = 13/49 (26%), Positives = 25/49 (51%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
            L++F      EL+ K G  + ++   +++W +G   G  G FP ++V
Sbjct: 8  EALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFV 56

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70

 Score = 72.7 bits (179), Expect = 2e-18
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
            +  +Y ++ ++ DEL+L+ G +V V+   D  W+ G      + G FP NYV  V
Sbjct: 8  TPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPV 64

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus} Length = 77

 Score = 72.9 bits (179), Expect = 2e-18
 Identities = 15/61 (24%), Positives = 31/61 (50%)

Query: 35 RHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQVTHNLQIA 94
              E+ +K G  +T++++++++WWK +   R G+ P+ YV K+  G     V       
Sbjct: 3  MGPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKELVLALYDYQ 62

Query: 95 D 95
          +
Sbjct: 63 E 63

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus} Length = 68

 Score = 72.6 bits (179), Expect = 3e-18
 Identities = 13/54 (24%), Positives = 27/54 (50%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
            L N++ ++  +L    G  + +    D+NW++G+  G  G FP++ V  +  
Sbjct: 11 KALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEVISG 64

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus} Length = 73

 Score = 72.7 bits (179), Expect = 3e-18
 Identities = 18/54 (33%), Positives = 32/54 (59%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
            LY+F+  +  EL  + G  +T+ +  D+NW++G   G+ G+FP +YV  + P
Sbjct: 17 KALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQVLVP 70

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A Length = 57

 Score = 72.2 bits (178), Expect = 3e-18
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYV 75
            L++F     ++L  K G  + + D  ++ WW  +   G+ G  P  YV
Sbjct: 5  RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 54

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens} Length = 68

 Score = 72.3 bits (178), Expect = 3e-18
 Identities = 21/58 (36%), Positives = 32/58 (55%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERP 84
            LY+F+  +  EL  K G  +T+ +  D+NW++G   G  G+FP NYV  + P E  
Sbjct: 7  RGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVIVPLEHH 64

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens} Length = 73

 Score = 72.4 bits (178), Expect = 4e-18
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVI--DTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERP 84
           V++ +++++ DEL +K G  VT+I  D  D  WW+G+  GR G FP N+V  + P    
Sbjct: 13 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPDFEK 72

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A Length = 67

 Score = 71.9 bits (177), Expect = 4e-18
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSNYVIKVQPGE 82
           + +  +++ ++   ELD+K   ++ ++D S   WW+ +    R GY PSNYV +     
Sbjct: 5  VIVIAKWDYTAQQDQELDIKKNERLWLLDDSK-TWWRVRNAANRTGYVPSNYVERKLEHH 63

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A Length = 74

 Score = 72.3 bits (178), Expect = 4e-18
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVI-DTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPL 85
          +  Y+FK+   DEL  K G  + V+ +  DQNW+K +  G+ G+ P NY+      E  +
Sbjct: 13 IAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPEFIV 72

Query: 86 Q 86
           
Sbjct: 73 T 73

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 93

 Score = 72.5 bits (178), Expect = 4e-18
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 28 VLYNFKSRHADELDLKPGYKVTVI--DTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPL 85
           LY F++R+ DE+    G  + V      +  W  G   G  G+FP NYV K+   E   
Sbjct: 10 ALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSSENEK 69

Query: 86 QVT 88
           V+
Sbjct: 70 AVS 72

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85

 Score = 72.5 bits (178), Expect = 5e-18
 Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 22 PTNLFVV-LYNFKSRHADELDLKPGYKVTVI--DTSDQNWWKGKCMGRVGYFPSNYVIKV 78
            + +V+ L ++ + +   L    G  + ++   T +  W  G   GR G FP++ V   
Sbjct: 6  SGSGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPA 65

Query: 79 QPGERPL 85
             +   
Sbjct: 66 AAPDFSF 72

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus} Length = 142

 Score = 74.0 bits (181), Expect = 5e-18
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVID-TSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPL 85
             Y+F +R   EL LK G  + +++    Q WW+G+  GR+G+FPSNYV +      P 
Sbjct: 9  KARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYSEYLPE 68

Query: 86 QVTHN 90
              +
Sbjct: 69 TGGGS 73

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens} Length = 79

 Score = 71.9 bits (177), Expect = 5e-18
 Identities = 13/54 (24%), Positives = 27/54 (50%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
            L++F      EL+ K G  + ++   +++W +G   G  G FP ++V  ++ 
Sbjct: 22 EALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKD 75

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A Length = 60

 Score = 71.4 bits (176), Expect = 6e-18
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVI-DTSDQNWWKGKCM--GRVGYFPSNYV 75
           +V Y+F +   DEL +K G KV ++ D   ++WW  + +  G+ G  P+ ++
Sbjct: 5  GIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFI 57

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} PDB: 2d1x_A Length = 65

 Score = 71.5 bits (176), Expect = 7e-18
 Identities = 20/49 (40%), Positives = 30/49 (61%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          + LY++++   DE+   P   +T I+  D  WW+G C GR G FP+NYV
Sbjct: 13 IALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYV 61

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae} Length = 73

 Score = 71.6 bits (176), Expect = 7e-18
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQPGERP 84
          V LY+F+  + +EL L  G  V +     Q W   +     + G  P  +V  +QP    
Sbjct: 9  VALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQPELEH 68

Query: 85 LQVTH 89
              H
Sbjct: 69 HHHHH 73

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 91

 Score = 72.1 bits (177), Expect = 8e-18
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVID--TSDQNWWKGK-CMGRVGYFPSNYVIKV 78
            ++   LY F S   +EL+ + G  + VI+   +D  WWK K   G+VG  P NYV+ +
Sbjct: 16 VLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVL 75

Query: 79 QPGE 82
            G 
Sbjct: 76 SDGP 79

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1 Length = 65

 Score = 71.1 bits (175), Expect = 9e-18
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYVIKVQP 80
            L++F     ++L  K G  + + D  ++ WW  +   G+ G  P  YV K   
Sbjct: 7  RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYHH 61

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1 Length = 63

 Score = 70.8 bits (174), Expect = 9e-18
 Identities = 15/50 (30%), Positives = 30/50 (60%)

Query: 38 DELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQV 87
           E+ +K G  +T++++++++WWK +   R G+ P+ YV K+  G     V
Sbjct: 4  REVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKELV 53

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 81

 Score = 71.3 bits (175), Expect = 1e-17
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVID--TSDQNWWKGKCMGRVGYFPSNYVIKVQPG 81
           VLY++ + ++ EL L     +TV      D +W  G+   + G  P  Y+  +  G
Sbjct: 21 RVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLELLNSG 77

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 70.8 bits (174), Expect = 1e-17
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVI---DTSDQNWWKGKCMGRVGYFPSNYVIKVQPG 81
            LY+++ +  DEL    G  + ++   +  D  +W+G+  GR+G FPS  V ++  G
Sbjct: 12 KALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEELSSG 69

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A Length = 64

 Score = 70.7 bits (174), Expect = 1e-17
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVI--DTSDQNWWKGKCMGRVGYFPSNYVIKV 78
            L+ +   + DEL  + G  + +I  +T +  WWKG+  G+ G FP N+ +++
Sbjct: 10 RTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQI 63

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 70

 Score = 70.8 bits (174), Expect = 1e-17
 Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 2/51 (3%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVI--DTSDQNWWKGKCMGRVGYFPSNYV 75
           V++ +++++ DEL +K G  VT+I  D  D  WW+G+  GR G FP N+V
Sbjct: 11 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 61

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 74

 Score = 70.8 bits (174), Expect = 1e-17
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
            L ++ ++  + L+      +TV++   +NWW G+  G  G+FP +YV  +   E
Sbjct: 14 QALCSWTAKKDNHLNFSKHDIITVLE-QQENWWFGEVHGGRGWFPKSYVKIIPGSE 68

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 71.3 bits (175), Expect = 1e-17
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQPGERP 84
          V  Y FK     EL  + G  + +I   ++NW++G+    GR G FP++YV   +     
Sbjct: 21 VAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVSREPRLR 80

Query: 85 LQVTH 89
          L    
Sbjct: 81 LCDDS 85

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens} Length = 69

 Score = 70.8 bits (174), Expect = 1e-17
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSNYVIKVQPGE 82
           V LY++ +  +DEL +  G  + V    +++WW G    G+ GYFP+N+V      +
Sbjct: 9  VVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVASETLYQ 66

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 80

 Score = 70.9 bits (174), Expect = 2e-17
 Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGR-----VGYFPSNYVI 76
             +  V   + +  +++L L PG  + ++  +   WW+G+   R      G+FP+++V 
Sbjct: 6  SGEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVK 65

Query: 77 KVQPGERP 84
           + P    
Sbjct: 66 LLGPSSER 73

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A* Length = 62

 Score = 70.3 bits (173), Expect = 2e-17
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
             ++ F  RH DEL+L+    + V   ++  W++   M  G  G FP+ Y I+V
Sbjct: 6  HRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEV 60

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A Length = 67

 Score = 70.0 bits (172), Expect = 2e-17
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG--RVGYFPSNYVIKVQPGERP 84
          +  +NF      E+  + G ++T++   D+NW++G+  G  R G FP  Y   V   +RP
Sbjct: 10 IAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITY---VDVIKRP 66

Query: 85 L 85
          L
Sbjct: 67 L 67

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 88

 Score = 70.6 bits (173), Expect = 2e-17
 Identities = 14/56 (25%), Positives = 21/56 (37%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
          +      +     L L+ G  V V   +    W+G+  GR G FP  +V    P  
Sbjct: 22 IQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQN 77

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 70.5 bits (173), Expect = 3e-17
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSD--QNWWKGKCMGRVGYFPSNYVIKVQPGERP 84
            LY+F+ +   +L+ + G ++TVI  +D   +WW+GK  G+ G FP+NYV  +  G   
Sbjct: 21 TALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYV-TMNSGPSS 79

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A Length = 73

 Score = 70.1 bits (172), Expect = 3e-17
 Identities = 14/56 (25%), Positives = 19/56 (33%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
             +       D L LK G  + +I       W G    +VG F   YV  +  G 
Sbjct: 15 HTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVLSSGP 70

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae} Length = 54

 Score = 69.5 bits (171), Expect = 3e-17
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQN-WWKGKCMGRVGYFPSNYV 75
           +Y ++++  DE+ + PG  +TVI   D + W  G+C G  G FP++Y 
Sbjct: 5  AIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYC 53

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A Length = 65

 Score = 69.7 bits (171), Expect = 3e-17
 Identities = 16/63 (25%), Positives = 36/63 (57%), Gaps = 8/63 (12%)

Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--------GRVGYFPSNYV 75
           L + LY+++ +   E+ +K G  +T++++++++WWK +           R G+ P+ YV
Sbjct: 2  ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYV 61

Query: 76 IKV 78
           K+
Sbjct: 62 KKL 64

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A Length = 76

 Score = 70.1 bits (172), Expect = 3e-17
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG---RVGYFPSNYVIKVQP 80
            +Y+ ++ + DEL    G  + V    DQ WW G   G   R G FP ++V  +  
Sbjct: 14 KTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHILSD 70

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens} Length = 70

 Score = 69.6 bits (171), Expect = 4e-17
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG--RVGYFPSNYV 75
          +  +NF      E+  + G ++T++   D+NW++G+  G  R G FP  YV
Sbjct: 11 IAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYV 61

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 69

 Score = 69.6 bits (171), Expect = 4e-17
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRV-GYFPSNYVIKVQP 80
            LY++K++ +DEL    G  +  +      WWKG    R+  YFPSNYV  +  
Sbjct: 11 KALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDISG 65

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A Length = 62

 Score = 69.1 bits (170), Expect = 4e-17
 Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVID-TSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
          +V Y++ + H DEL ++ G  +  +    ++ W +G+  GR G FP N+V +++ 
Sbjct: 5  IVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKR 59

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A Length = 71

 Score = 69.2 bits (170), Expect = 6e-17
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVG-YFPSNYVIKVQPGE 82
            L+++K++  DEL       +  ++  +  WW+G   G+   +FPSNYV ++   E
Sbjct: 10 KALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVNPE 66

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A Length = 58

 Score = 68.7 bits (168), Expect = 6e-17
 Identities = 20/49 (40%), Positives = 30/49 (61%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
           V + + +   DEL L  G +VTV++     WW+G   G++G+FPSNYV
Sbjct: 5  FVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYV 53

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 72.4 bits (177), Expect = 8e-17
 Identities = 23/52 (44%), Positives = 30/52 (57%)

Query: 29  LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
           L++F  +   EL  + G  + V+D SD NWWKG C G+ G FP NYV  V  
Sbjct: 164 LFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNR 215

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 65.5 bits (159), Expect = 4e-14
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 27  VVLYNFKSRHADELDLKPGYKVTVIDTS-DQNWWKGKCMGRVGYFPSNYVIKVQPGERPL 85
           +  Y+FK+   DEL  K G  + V++   DQNW+K +  G+ G+ P NY+          
Sbjct: 4   IAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPWFFG 63

Query: 86  QVT----HNLQIADGESGLSLLRD 105
           ++       +       G  L+R+
Sbjct: 64  KIPRAKAEEMLSKQRHDGAFLIRE 87

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 72

 Score = 68.8 bits (169), Expect = 8e-17
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 29 LYNFKSRHADELDLKPGYKVTVIDTS-DQNWWKGKCMGRVGYFPSNYV 75
          LY  K+ H  EL    G     +  S +  W +G   G+ G  P NYV
Sbjct: 16 LYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYV 63

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A Length = 71

 Score = 68.9 bits (169), Expect = 9e-17
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDT--SDQNWWKGKCM-GRVGYFPSNYVIKVQPGE 82
            LY F S   +EL+ + G  + VI+   +D  WWK K   G+VG  P NYV+ +  G 
Sbjct: 10 QTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDGP 68

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens} Length = 86

 Score = 69.1 bits (169), Expect = 1e-16
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 16 KAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNY 74
          K   +    + +  +++ ++   ELD+K   ++ ++D S   WW+ +    R GY PSNY
Sbjct: 24 KNLHMTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSK-TWWRVRNAANRTGYVPSNY 82

Query: 75 V 75
          V
Sbjct: 83 V 83

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A Length = 60

 Score = 68.0 bits (167), Expect = 1e-16
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSD--QNWWKGKCMGRVGYFPSNYV 75
          V LY+F    + +L  + G  +T++  SD   +WW G+  GR G FP+NYV
Sbjct: 7  VALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYV 57

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 68.5 bits (168), Expect = 1e-16
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVID---TSDQNWWKGKCMGRVGYFPSNYV 75
            LY+     +DEL    G  +T+++      + WWK    GR G  P+N +
Sbjct: 11 RALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRL 62

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 68.6 bits (168), Expect = 1e-16
 Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 3/67 (4%)

Query: 19 RLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTS-DQNWWKGKCM--GRVGYFPSNYV 75
          R  P    +           EL  + G  VT+++   +++W++ K    G+ G   +  +
Sbjct: 13 RWAPGTQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGAL 72

Query: 76 IKVQPGE 82
           +     
Sbjct: 73 RERSGPS 79

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A Length = 61

 Score = 68.0 bits (167), Expect = 1e-16
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVG-YFPSNYV 75
            L+++K++  DEL       +  ++  D  WW+G   G+   +FPSNYV
Sbjct: 7  KALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYV 56

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 72

 Score = 67.8 bits (166), Expect = 2e-16
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-----MGRVGYFPSNYVI 76
              +V L++FKSR  +EL  + G    V    +Q WW             GY P NY+ 
Sbjct: 9  LGPKYVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHNYLA 68

Query: 77 KVQ 79
          + +
Sbjct: 69 ERE 71

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A Length = 60

 Score = 67.7 bits (166), Expect = 2e-16
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSNYVIKVQPGE 82
             Y+F +R++ EL +     + ++D     WWK +   G  G+ P+N +  ++  E
Sbjct: 5  KSKYDFVARNSSELSVMKDDVLEILDDRR-QWWKVRNASGDSGFVPNNILDIMRTPE 60

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A Length = 68

 Score = 67.7 bits (166), Expect = 2e-16
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 7/61 (11%)

Query: 22 PTNLFVV--LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG-----RVGYFPSNY 74
          P   F V   + +KS + D+L+ +   ++ V    D  W+ G+          G FP ++
Sbjct: 4  PEVPFKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSF 63

Query: 75 V 75
          V
Sbjct: 64 V 64

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 72.6 bits (177), Expect = 3e-16
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 26  FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSNYV 75
            V  + F      +L  + G ++ ++  ++Q+WW+ +   G  G  P+NYV
Sbjct: 150 VVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYV 200

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 68.7 bits (167), Expect = 5e-15
 Identities = 11/53 (20%), Positives = 19/53 (35%)

Query: 30  YNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
               +    +L +K G  V V        +K +  G++G  P  Y+      E
Sbjct: 256 RVPNAYDPTQLRVKKGQTVLVTQKMSNGMYKAELDGQIGSVPHTYLRFTAVSE 308

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 54.8 bits (131), Expect = 6e-10
 Identities = 19/125 (15%), Positives = 33/125 (26%), Gaps = 16/125 (12%)

Query: 30  YNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQVTH 89
           Y+   R ADE +    Y +   +  +              FP    +      R L    
Sbjct: 78  YSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEAS 137

Query: 90  NLQI----------------ADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPL 133
            L                   + E+ L   + + +  +          RN     G+ P 
Sbjct: 138 LLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPA 197

Query: 134 KYLQE 138
            Y+Q 
Sbjct: 198 NYVQI 202

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum} Length = 80

 Score = 67.8 bits (166), Expect = 3e-16
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQN-WWKGKCMGRVGYFPSNYVIKVQPGERPL 85
            L ++       L  K    +T+     +N W+ G+  G+ G FP ++V  +     P 
Sbjct: 14 RALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEILLSDVPPP 73

Query: 86 QVTH 89
          Q  H
Sbjct: 74 QPVH 77

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens} Length = 69

 Score = 67.3 bits (165), Expect = 3e-16
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 23 TNLFVV-LYNFKSRHADELDLKPGYKVTVIDTSDQN---WWKGKCMGRVGYFPSNYV--I 76
           N+    LY+  +   DEL  + G  +TV++   Q    WW     GR G  P N +  +
Sbjct: 2  LNVLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKIL 61

Query: 77 KVQPGERP 84
               ++P
Sbjct: 62 VGMYDKKP 69

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae} Length = 59

 Score = 66.8 bits (164), Expect = 3e-16
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKG--KCMGRVGYFPSNYV 75
          V LY+F+  + +EL L  G  V +     Q W     +   + G  P  +V
Sbjct: 5  VALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFV 55

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1 Length = 71

 Score = 67.3 bits (165), Expect = 3e-16
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVID-TSDQNWWKGKC-MGRVGYFPSNYVIKVQ 79
          +  YNF      +L    G  +T++  T D NW+K K  +GR G  P+NYV K +
Sbjct: 15 IAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKRE 69

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A Length = 64

 Score = 66.9 bits (164), Expect = 4e-16
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
          +  +Y++ ++  DE+  + G  +  +   D  W  G     GR G  P+NY+
Sbjct: 9  YRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYI 60

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A Length = 67

 Score = 66.6 bits (163), Expect = 5e-16
 Identities = 14/56 (25%), Positives = 21/56 (37%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
          +      +     L L+ G  V V   +    W+G+  GR G FP  +V    P  
Sbjct: 7  IQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQN 62

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 67.1 bits (164), Expect = 6e-16
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 19 RLLPTNLFVVLYNFKSRHADELDLKPGYKVTVI----DTSDQNWWKGKCM--GRVGYFPS 72
          R        V+Y +  ++ DEL+L PG  + +      ++ + W  G  +  G  G  P 
Sbjct: 12 RFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPE 71

Query: 73 NYVIKV 78
          NY+ K 
Sbjct: 72 NYITKA 77

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A Length = 69

 Score = 66.2 bits (162), Expect = 7e-16
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 26 FVVLYNFK-SRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQPGE 82
          F   Y+F  S  + EL LK G  V +       W   K +   + G+ P+ Y+   +   
Sbjct: 5  FEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDTR 64

Query: 83 RPLQV 87
            + V
Sbjct: 65 NTVPV 69

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens} Length = 89

 Score = 66.8 bits (163), Expect = 7e-16
 Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 6/57 (10%)

Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVID-----TSDQNWWKGKCM-GRVGYFPSNYV 75
          ++  ++++++   +EL L+ G +V V+      + D+ WW G+   GRVG FPSNYV
Sbjct: 31 VWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYV 87

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A Length = 58

 Score = 65.7 bits (161), Expect = 9e-16
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
             Y++ +   +EL      K+  I+  D +WW G+    G  G FPSNYV
Sbjct: 4  TAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 54

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans} Length = 174

 Score = 67.9 bits (165), Expect = 2e-15
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 26  FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSNYV 75
            V  + F      +L  + G ++ ++  ++Q+WW+ +   G  G  P+NYV
Sbjct: 121 VVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYV 171

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans} Length = 174

 Score = 44.4 bits (104), Expect = 2e-06
 Identities = 19/125 (15%), Positives = 33/125 (26%), Gaps = 16/125 (12%)

Query: 30  YNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQVTH 89
           Y+   R ADE +    Y +   +  +              FP    +      R L    
Sbjct: 49  YSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEAS 108

Query: 90  NLQ----------------IADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPL 133
            L                   + E+ L   + + +  +          RN     G+ P 
Sbjct: 109 LLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPA 168

Query: 134 KYLQE 138
            Y+Q 
Sbjct: 169 NYVQI 173

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 65.1 bits (159), Expect = 3e-15
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSD-QNWWKGK-CMGRVGYFPSNYV 75
           V+Y++K+   DEL ++    + VI+  D ++W K +  +G+VGY P  Y+
Sbjct: 17 KVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYL 67

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 69.3 bits (168), Expect = 4e-15
 Identities = 14/57 (24%), Positives = 21/57 (36%)

Query: 26  FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
            +      +     L L+ G  V V   +    W+G+  GR G FP  +V    P  
Sbjct: 242 AIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQN 298

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 60.8 bits (146), Expect = 4e-12
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 1/66 (1%)

Query: 11  HDLTQKAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGY 69
                             LY+F    A++L  K G  + +I+  ++ WW  +   GRVG 
Sbjct: 113 VSAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGM 172

Query: 70  FPSNYV 75
            P  YV
Sbjct: 173 IPVPYV 178

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 69.2 bits (168), Expect = 4e-15
 Identities = 13/69 (18%), Positives = 23/69 (33%)

Query: 14  TQKAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSN 73
                        +      +     L L+ G  V V   +    W+G+C G+ G+FP  
Sbjct: 230 LPNLQNGPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFT 289

Query: 74  YVIKVQPGE 82
           +V  +    
Sbjct: 290 HVRLLDQQN 298

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 61.9 bits (149), Expect = 2e-12
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 1/81 (1%)

Query: 1   MNLIPPLITLHDLTQKAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWK 60
             LI P+      +    R         L++F     ++L  K G  + + D  ++ WW 
Sbjct: 112 TTLIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWN 171

Query: 61  GK-CMGRVGYFPSNYVIKVQP 80
            +   G+ G  P  YV K +P
Sbjct: 172 AEDSEGKRGMIPVPYVEKYRP 192

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens} Length = 341

 Score = 69.3 bits (168), Expect = 4e-15
 Identities = 19/84 (22%), Positives = 39/84 (46%)

Query: 27  VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQ 86
             L++F      EL+ K G  + ++   +++W +G   G  G FP ++V  ++       
Sbjct: 178 EALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFPEEDD 237

Query: 87  VTHNLQIADGESGLSLLRDQIVIQ 110
            T+ L+    E  +S ++D  V +
Sbjct: 238 PTNWLRCYYYEDTISTIKDIAVEE 261

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 63.8 bits (156), Expect = 6e-15
 Identities = 10/51 (19%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVI-DTSDQNWWKGK-CMGRVGYFPSNYV 75
          V +Y+F+      + +  G  ++++ +     W + +   G  GY P++Y+
Sbjct: 11 VAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYL 61

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D Length = 60

 Score = 63.0 bits (154), Expect = 1e-14
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSD-QNWWKGKC-MGRVGYFPSNYV 75
            LY++  +  DEL  K G ++T +   D Q W +G+   G++G +P+NYV
Sbjct: 7  RALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYV 57

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens} Length = 67

 Score = 63.1 bits (154), Expect = 1e-14
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 28 VLYNFKSRHAD--ELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          V+        D   L L+ G  V V   +    W+G+C G+ G+FP  +V
Sbjct: 11 VIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHV 60

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 63.2 bits (154), Expect = 1e-14
 Identities = 12/65 (18%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM----GRVGYFPSNYVIK 77
            +++V + +++    +    + G  + V++ +   WW  + +       G+ PSNY+ K
Sbjct: 9  LKDVYVSIADYEG-DEETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEK 67

Query: 78 VQPGE 82
             G 
Sbjct: 68 KNSGP 72

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 62.8 bits (153), Expect = 2e-14
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
           +   F ++ ADE+ L+    V V+   D  W  G+ +  G  G+FP ++   +
Sbjct: 21 EITKAFFAKQADEVTLQQADVVLVLQQED-GWLYGERLRDGETGWFPEDFARFI 73

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A Length = 92

 Score = 63.3 bits (154), Expect = 2e-14
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 9/71 (12%)

Query: 22 PTNLFVV--LYNFKSRHAD-ELDLKPGYKVTVIDTSDQ-----NWWKGKCM-GRVGYFPS 72
          P+ L     LY+F   + + E+ LK G  + ++   D      +WWK +   G +GY P 
Sbjct: 11 PSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPY 70

Query: 73 NYVIKVQPGER 83
          NY+  ++  ++
Sbjct: 71 NYIEIIKRRKK 81

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A Length = 58

 Score = 61.9 bits (151), Expect = 3e-14
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 25 LFVVLYNFK-SRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
          +F   Y+F  S    EL LK G  + +       W  GK +   + G+ P+ Y+
Sbjct: 2  MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYM 55

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A Length = 230

 Score = 66.1 bits (160), Expect = 3e-14
 Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 1/83 (1%)

Query: 1   MNLIPPLITLHDLTQKAHRLLPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWK 60
             LI P+      +    R         L++F     ++L  K G  + + D  ++ WW 
Sbjct: 114 TTLIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWN 173

Query: 61  GKCM-GRVGYFPSNYVIKVQPGE 82
            +   G+ G  P  YV K +P  
Sbjct: 174 AEDSEGKRGMIPVPYVEKYRPAS 196

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 62.0 bits (151), Expect = 5e-14
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 8/63 (12%)

Query: 26 FVVLYNFKSRHA-------DELDLKPGYKVTVIDTSD-QNWWKGKCMGRVGYFPSNYVIK 77
           V LY++  R +        EL    G  +TV    D   ++ G+  G+ G  PSN++ +
Sbjct: 10 MVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLEE 69

Query: 78 VQP 80
          V  
Sbjct: 70 VSG 72

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus} Length = 93

 Score = 62.1 bits (151), Expect = 6e-14
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 5/54 (9%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQN----WWKGKCMGR-VGYFPSNYV 75
             Y+F +   +E+  + G  + +     Q     W      G+  G  P+NYV
Sbjct: 21 RAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYV 74

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 65.9 bits (161), Expect = 9e-14
 Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 11/107 (10%)

Query: 25  LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQPGE 82
            FV LY+++SR   +L  K G ++ +++ ++ +WW    +  G+ GY PSNYV      +
Sbjct: 4   TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQ 63

Query: 83  RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQG 129
                   +   + E    LL +       +   G  ++R  E  +G
Sbjct: 64  AEEWYFGKITRRESE---RLLLNA------ENPRGTFLVRESETTKG 101

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 96

 Score = 61.5 bits (149), Expect = 1e-13
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 8/85 (9%)

Query: 14 TQKAHRLLPTNLFVVLYNFKSRHA------DELDLKPGYKVTVIDTSDQN-WWKGKCM-G 65
          T K       +L V  Y++            EL L  G  + V    D++ +++G+ + G
Sbjct: 8  TSKQRYSGKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDG 67

Query: 66 RVGYFPSNYVIKVQPGERPLQVTHN 90
          + G  PSN+V  VQ  E  L  T  
Sbjct: 68 QRGLVPSNFVDFVQDNESRLASTSG 92

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens} Length = 83

 Score = 61.4 bits (149), Expect = 1e-13
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 9/74 (12%)

Query: 11 HDLTQKAHRLLPTNLFVV--LYNFKSRH-ADELDLKPGYKVTVIDTSDQNWWKGKCMG-- 65
          H     +  L+P     V  L +F + H    L+++ G  +TV++      WKG      
Sbjct: 4  HHHHHHSSGLVPRGSLKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQ 63

Query: 66 ----RVGYFPSNYV 75
              R+GYFP   V
Sbjct: 64 RGTDRIGYFPPGIV 77

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae} Length = 70

 Score = 60.8 bits (148), Expect = 1e-13
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 6/66 (9%)

Query: 22 PTNLFVV--LYNFKSRHAD--ELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSNYVI 76
             ++    LY + +   D  E+  +    + V D     WWK +   G  G  PSNYV 
Sbjct: 2  DNFIYKAKALYPYDADDDDAYEISFEQNEILQVSDIEG-RWWKARRANGETGIIPSNYVQ 60

Query: 77 KVQPGE 82
           +   E
Sbjct: 61 LIDGPE 66

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 80

 Score = 60.5 bits (147), Expect = 2e-13
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 9/70 (12%)

Query: 22 PTNLFVV--LYNFKSRHAD-ELDLKPGYKVTVIDTSDQ-----NWWKGK-CMGRVGYFPS 72
          P+ L     LY+F   + + E+ LK G  + ++   D      +WWK +   G +GY P 
Sbjct: 11 PSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPY 70

Query: 73 NYVIKVQPGE 82
          NY+  ++  +
Sbjct: 71 NYIEIIKRRK 80

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 58

 Score = 59.5 bits (145), Expect = 3e-13
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWW---KGKCMGRVGYFPSNYV 75
          VLY +  +  DE+ + PG K++++     + W        G  G  P+ Y+
Sbjct: 6  VLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYI 56

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens} Length = 486

 Score = 64.0 bits (154), Expect = 5e-13
 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 2/54 (3%)

Query: 28  VLYNFKSRHADELDLKPGYKVTVIDTSD-QNWWKGKCM-GRVGYFPSNYVIKVQ 79
            LY+++ +  DEL  K G ++T ++  D Q W KG+   G+VG +P+NYV  +Q
Sbjct: 433 ALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVEAIQ 486

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens} Length = 119

 Score = 60.5 bits (146), Expect = 5e-13
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 27  VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM---GRVGYFPSNYV 75
           V +YNF+   A +L L+ G  V + +T   +W++G  +      G FP +++
Sbjct: 63  VAIYNFQGSGAPQLSLQIGDVVRIQET-CGDWYRGYLIKHKMLQGIFPKSFI 113

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 58.9 bits (143), Expect = 6e-13
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 28 VLYNFK-SRHADELDLKPGYKVTVID-TSDQNWWKGK-CMGRVGYFPSNYV-IKVQPGER 83
          V+Y+F      +EL +  G  +TV +      W +GK   G  G  P++YV I    G+ 
Sbjct: 14 VMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEILPNDGKD 73

Query: 84 PLQ 86
          P  
Sbjct: 74 PFS 76

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 69

 Score = 58.5 bits (142), Expect = 7e-13
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 7/56 (12%)

Query: 27 VVLYNFKSRHAD-ELDLKPGYKVTVIDTSDQ-----NWWKGKCM-GRVGYFPSNYV 75
            LY+F   + + E+ LK G  + ++   D      +WWK +   G +GY P NY+
Sbjct: 11 RALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYI 66

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 58.5 bits (142), Expect = 8e-13
 Identities = 8/53 (15%), Positives = 15/53 (28%), Gaps = 3/53 (5%)

Query: 26 FVVLYNF-KSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
             +  + K    DE+    G    V +  +  W     +     G    + V
Sbjct: 10 VRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLV 62

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 62.8 bits (153), Expect = 1e-12
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 3/60 (5%)

Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQ 79
             + V LY++++ H ++L  + G ++ V++ S + WWK + +   + GY PSNYV +V 
Sbjct: 7  IRIIVVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVARVD 65

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 62.6 bits (152), Expect = 1e-12
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 11/110 (10%)

Query: 22  PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQ 79
               FV LY+++SR   +L  K G ++ +++ ++ +WW    +  G+ GY PSNYV    
Sbjct: 84  GVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 143

Query: 80  PGERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQG 129
             +        +   + E  L    +           G  ++R  E  +G
Sbjct: 144 SIQAEEWYFGKITRRESERLLLNAENP---------RGTFLVRESETTKG 184

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 62.1 bits (151), Expect = 2e-12
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 22  PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWK-GKCMGRVGYFPSNYVIKVQP 80
             NLFV LY+F +   + L +  G K+ V+  +    W   +     G+ PSNY+  V  
Sbjct: 42  DPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVNS 101

Query: 81  GER 83
            E+
Sbjct: 102 LEK 104

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B Length = 115

 Score = 58.6 bits (141), Expect = 2e-12
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 15/68 (22%)

Query: 27  VVLYNFKSRHADELDLKPGYKVTVI-----DTSDQNWWKG----------KCMGRVGYFP 71
              +++ +   DEL LK G  V VI     +  D+ W  G          +     G FP
Sbjct: 48  QAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFP 107

Query: 72  SNYVIKVQ 79
            N+  +VQ
Sbjct: 108 ENFTERVQ 115

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 56.6 bits (137), Expect = 5e-12
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 8/64 (12%)

Query: 25 LFVVLYNFKSR-------HADELDLKPGYKVTVI-DTSDQNWWKGKCMGRVGYFPSNYVI 76
          + +   ++              L L+ G  V V     DQ ++ G+  G  G  P++ + 
Sbjct: 9  IMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLD 68

Query: 77 KVQP 80
           +  
Sbjct: 69 HMSL 72

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 60.1 bits (146), Expect = 1e-11
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTS-DQNWWKGKCM-GRVGYFPSNYVIKVQ 79
               +  YNF      +L    G  +T++  + D NW+K K   GR G  P+NYV K +
Sbjct: 10 SGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKRE 69

Query: 80 PGERP 84
            +  
Sbjct: 70 GVKAG 74

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 92

 Score = 56.1 bits (135), Expect = 1e-11
 Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 4/71 (5%)

Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSD----QNWWKGKCMGRVGYFPSNYVIK 77
          P  LF    NF +    ++ L  G  V VI   D    QN W        G+  S+++  
Sbjct: 16 PEKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKP 75

Query: 78 VQPGERPLQVT 88
            P       +
Sbjct: 76 YNPRRSHSDAS 86

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A* Length = 175

 Score = 57.0 bits (137), Expect = 3e-11
 Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 12/115 (10%)

Query: 21  LPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIKV 78
           L  NL + L++++  H  +L  + G ++ +++     WWK +    G+ G+ P N+V K 
Sbjct: 10  LQDNLVIALHSYEPSHDGDLGFEKGEQLRILE-QSGEWWKAQSLTTGQEGFIPFNFVAKA 68

Query: 79  QPGERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPL 133
              E       NL   D E  L                G  +IR  E+  G   L
Sbjct: 69  NSLEPEPWFFKNLSRKDAERQL---------LAPGNTHGSFLIRESESTAGSFSL 114

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466

 Score = 56.9 bits (137), Expect = 1e-10
 Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 8/89 (8%)

Query: 28  VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQV 87
            L++  +    EL  K G  + V+D +++ WW G+     G+FP+++V      + P   
Sbjct: 35  ALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVNQDEPADD 94

Query: 88  THNL--------QIADGESGLSLLRDQIV 108
              L          A+ +S    +R  ++
Sbjct: 95  DAPLAGNSGAEDGGAEAQSSKDQMRTNVI 123

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1 Length = 72

 Score = 53.1 bits (128), Expect = 1e-10
 Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 28 VLYNF-KSRHADELDLKPGYKVTVIDTSDQN-WWKGKCM--GRVGYFPSNYV 75
           ++      +   L    G  +T++   +++ W  G+       G+FPS+Y 
Sbjct: 12 TIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYT 63

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} PDB: 2kt1_A Length = 90

 Score = 53.1 bits (127), Expect = 2e-10
 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 17/72 (23%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQN---------------WWKGKCM--GRVG 68
          +  LY F+    ++L+L PG  + V   + Q                W  G      + G
Sbjct: 14 YRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRG 73

Query: 69 YFPSNYVIKVQP 80
           FP  YV  + P
Sbjct: 74 DFPGTYVEFLGP 85

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Length = 283

 Score = 55.5 bits (134), Expect = 2e-10
 Identities = 24/80 (30%), Positives = 41/80 (51%)

Query: 29  LYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPLQVT 88
           +Y++ +++ DEL    G  + V++  D +WWKG+  G+VG FPSNYV      +   Q  
Sbjct: 8   MYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDMDPSQQWC 67

Query: 89  HNLQIADGESGLSLLRDQIV 108
            +L + D  +     R   +
Sbjct: 68  SDLHLLDMLTPTERKRQGYI 87

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A Length = 65

 Score = 51.7 bits (124), Expect = 4e-10
 Identities = 8/53 (15%), Positives = 15/53 (28%), Gaps = 3/53 (5%)

Query: 26 FVVLYNF-KSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
             +  + K    DE+    G    V +  +  W     +     G    + V
Sbjct: 8  VRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLV 60

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A Length = 62

 Score = 50.5 bits (121), Expect = 1e-09
 Identities = 10/42 (23%), Positives = 27/42 (64%)

Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC 63
             L + LY+++ +   E+ +K G  +T++++++++WWK + 
Sbjct: 20 GKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV 61

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens} Length = 67

 Score = 50.4 bits (121), Expect = 1e-09
 Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 28 VLYNFK-SRHADELDLKPGYKVTVIDTSDQN-WWKGKCM--GRVGYFPSNYV 75
           ++      +   L    G  +T++   +++ W  G+       G+FPS+Y 
Sbjct: 11 TIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYT 62

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} Length = 184

 Score = 52.4 bits (125), Expect = 2e-09
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKG---KCMGRVGYFPSNYV-IKVQPGE 82
          V +YNF+   A +L L+ G  V + +T   +W++G   K     G FP +++ IK    E
Sbjct: 21 VAIYNFQGSGAPQLSLQIGDVVRIQET-CGDWYRGYLIKHKMLQGIFPKSFIHIKEVTVE 79

Query: 83 RPLQVTHNLQIAD 95
          +     + +    
Sbjct: 80 KRRNTENIIPAEI 92

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} Length = 67

 Score = 49.6 bits (119), Expect = 2e-09
 Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 29 LYNFKS-RHADELDLKPGYKVTVIDTS-DQNWWKGKCM--GRVGYFPSNYV 75
          +++  +  ++  L  K G  +T++       W  G+       G+FP +Y 
Sbjct: 13 IFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYT 63

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} Length = 526

 Score = 53.3 bits (127), Expect = 3e-09
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 22  PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
             +  + +Y  + R ADE+ ++PG  + V       + KG     GR G +PS  V
Sbjct: 441 NAHNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKV 496

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1 Length = 78

 Score = 48.5 bits (115), Expect = 8e-09
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 7/62 (11%)

Query: 21 LPTNLFVVLYN----FKSRHADELDLKPGYKVTVIDT-SDQNWWKGKCM--GRVGYFPSN 73
          LP       Y             L L PG  V +    ++ NWW+G+      VG+FP N
Sbjct: 12 LPKMEVFQEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCN 71

Query: 74 YV 75
           V
Sbjct: 72 RV 73

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A Length = 70

 Score = 46.5 bits (110), Expect = 4e-08
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 38 DELDLKPGYKVTVIDTS-DQNWWKGKCM--GRVGYFPSNYV 75
            L L PG  V +     + NWW+G+      VG+FP N V
Sbjct: 25 PFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRV 65

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A Length = 108

 Score = 46.5 bits (110), Expect = 8e-08
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 12/71 (16%)

Query: 29 LYNFKSRHADELDLKPGYKVTV---IDTSDQNWWKG--------KCMGRVGYFPSNYVIK 77
          L ++ +     L +  G  V V   +    + +W G            R+GYFPS+ V +
Sbjct: 28 LQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVRE 87

Query: 78 VQ-PGERPLQV 87
           Q      + V
Sbjct: 88 DQTLKPGKVDV 98

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 48.2 bits (113), Expect = 9e-08
 Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 15/67 (22%)

Query: 27  VVLYNFKSRHADELDLKPGYKVTVIDTS-----DQNWWKG----------KCMGRVGYFP 71
              +++ +   DEL LK G  V VI        D+ W  G          K     G FP
Sbjct: 146 QAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFP 205

Query: 72  SNYVIKV 78
            N+  +V
Sbjct: 206 ENFTERV 212

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A Length = 83

 Score = 43.9 bits (103), Expect = 5e-07
 Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 17/72 (23%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQN---------------WWKGKCM--GRVG 68
          +  LY++K    +++DL  G  +TV   S                  W  G     G  G
Sbjct: 8  YRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERG 67

Query: 69 YFPSNYVIKVQP 80
           FP  YV  +  
Sbjct: 68 DFPGTYVEYIGR 79

>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo sapiens} PDB: 2gto_A Length = 96

 Score = 37.0 bits (85), Expect = 2e-04
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSD--QNWWKGKCM-GRVGYFPSNYV 75
            +L     + K    +EL  K G ++ +I  +D  +  W G+   G  GY  +  V
Sbjct: 27 VIHLAKACCDVKGG-KNELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKTTAV 82

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	139
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	99.94
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.92
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	99.9
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	99.9
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	99.82
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	99.8
2lx7_A	60	GAS-7, growth arrest-specific protein 7; structura	99.74
2lj0_A	65	Sorbin and SH3 domain-containing protein 1; R85FL,	99.73
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	99.68
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens}	99.68
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	99.68
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	99.67
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	99.67
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	99.67
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	99.67
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	99.67
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	99.67
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	99.67
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	99.67
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	99.67
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	99.66
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	99.66
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	99.66
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	99.66
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	99.66
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	99.66
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	99.66
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	99.66
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	99.66
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	99.66
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	99.65
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	99.65
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	99.65
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	99.65
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	99.65
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	99.65
4glm_A	72	Dynamin-binding protein; SH3 domain, DNMBP, struct	99.65
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	99.65
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	99.65
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	99.65
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	99.64
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	99.64
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	99.64
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	99.64
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	99.64
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.64
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	99.64
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	99.64
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.64
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	99.64
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	99.64
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	99.64
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	99.64
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	99.64
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	99.64
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	99.64
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	99.64
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	99.64
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	99.64
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	99.64
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	99.64
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	99.64
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	99.64
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	99.64
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	99.63
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	99.63
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	99.63
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	99.63
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.63
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	99.63
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	99.63
3u23_A	65	CD2-associated protein; structural genomics, struc	99.63
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	99.63
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	99.63
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	99.63
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	99.63
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	99.63
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	99.63
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	99.62
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	99.62
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	99.62
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	99.62
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	99.62
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	99.62
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	99.62
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	99.62
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	99.62
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	99.62
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	99.62
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	99.62
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	99.62
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	99.62
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	99.62
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	99.61
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	99.61
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	99.61
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	99.61
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	99.61
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	99.61
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	99.61
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	99.61
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	99.61
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	99.61
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	99.61
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	99.61
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	99.61
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	99.61
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	99.61
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	99.61
1i07_A	60	Epidermal growth factor receptor kinase substrate	99.61
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	99.6
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	99.6
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	99.6
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	99.6
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	99.6
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	99.6
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.6
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	99.6
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	99.6
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	99.6
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	99.6
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	99.59
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	99.59
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	99.59
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	99.59
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	99.59
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	99.59
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	99.59
2lx7_A	60	GAS-7, growth arrest-specific protein 7; structura	99.59
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	99.59
1awj_A	77	ITK; transferase, regulatory intramolecular comple	99.59
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.59
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	99.59
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	99.59
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	99.59
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	99.59
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	99.58
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	99.58
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.58
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	99.58
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	99.58
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	99.58
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	99.58
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	99.58
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	99.58
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	99.58
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.58
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	99.58
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	99.58
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	99.57
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	99.57
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	99.57
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.57
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	99.57
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	99.57
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	99.56
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	99.56
1wxb_A	68	Epidermal growth factor receptor pathway substrate	99.56
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	99.56
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	99.56
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	99.55
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	99.55
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	99.53
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	99.53
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	99.53
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	99.52
2lj0_A	65	Sorbin and SH3 domain-containing protein 1; R85FL,	99.52
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	99.52
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	99.51
2m0y_A	74	Dedicator of cytokinesis protein 1; apoptosis; NMR	99.51
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	99.51
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	99.5
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	99.48
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	99.48
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	99.47
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	99.46
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	99.45
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.45
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	99.44
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	99.42
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	99.42
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	99.42
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	99.41
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	99.41
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	99.41
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	99.4
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	99.4
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	99.4
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	99.4
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	99.4
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	99.4
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	99.39
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	99.39
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	99.39
1v1c_A	71	Obscurin; muscle, sarcomere, adapter, myogenesis,	99.39
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	99.39
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	99.38
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	99.38
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	99.38
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	99.38
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	99.38
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	99.38
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	99.38
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	99.38
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	99.38
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	99.38
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	99.37
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	99.37
1i07_A	60	Epidermal growth factor receptor kinase substrate	99.37
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	99.37
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	99.37
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.37
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	99.37
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	99.36
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	99.36
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	99.36
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	99.36
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	99.36
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	99.36
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	99.35
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	99.35
1wxb_A	68	Epidermal growth factor receptor pathway substrate	99.35
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	99.35
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	99.35
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens}	99.35
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	99.35
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	99.35
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	99.34
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	99.34
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	99.34
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	99.34
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	99.34
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	99.34
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	99.34
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	99.34
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	99.34
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	99.34
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	99.34
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	99.33
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.33
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.33
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	99.33
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	99.33
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	99.33
3u23_A	65	CD2-associated protein; structural genomics, struc	99.33
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	99.33
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	99.33
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	99.32
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	99.32
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	99.32
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	99.32
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	99.32
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	99.32
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	99.32
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	99.32
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	99.32
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	99.32
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	99.32
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	99.32
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	99.32
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	99.32
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	99.31
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	99.31
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.31
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.31
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	99.31
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	99.31
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.31
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	99.31
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	99.31
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	99.31
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	99.31
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.31
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	99.31
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	99.31
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	99.31
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	99.31
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	99.31
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	99.31
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	99.3
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	99.3
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	99.3
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.3
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	99.3
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	99.3
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	99.3
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	99.3
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	99.3
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	99.29
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	99.29
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	99.29
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	99.29
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	99.29
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	99.29
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	99.29
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	99.29
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	99.29
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	99.29
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.29
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	99.28
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	99.28
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	99.28
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	99.28
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.28
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	99.28
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	99.28
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	99.28
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	99.28
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	99.28
1u3o_A	82	Huntingtin-associated protein-interacting protein;	99.27
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	99.27
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	99.27
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	99.27
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	99.27
4glm_A	72	Dynamin-binding protein; SH3 domain, DNMBP, struct	99.26
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	99.26
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	99.26
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	99.26
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	99.26
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	99.26
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	99.26
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	99.26
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	99.26
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	99.26
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	99.25
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	99.25
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	99.25
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	99.25
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	99.25
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	99.25
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	99.25
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	99.25
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	99.24
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.24
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	99.24
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	99.23
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	99.23
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	99.23
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	99.23
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	99.22
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	99.21
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	99.21
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	99.21
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	99.2
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.2
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	99.2
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	99.19
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	99.19
2m0y_A	74	Dedicator of cytokinesis protein 1; apoptosis; NMR	99.18
1awj_A	77	ITK; transferase, regulatory intramolecular comple	99.18
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.18
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	99.17
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	99.17
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	99.17
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	99.16
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	99.16
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	99.15
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	99.15
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	99.15
1v1c_A	71	Obscurin; muscle, sarcomere, adapter, myogenesis,	99.14
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	98.74
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	99.12
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	99.11
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	99.11
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	99.1
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	99.09
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	99.09
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	99.08
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	99.08
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	99.08
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	99.02
1ri9_A	102	FYN-binding protein; SH3-like, helically extended,	99.02
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	98.99
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	98.97
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	98.95
1u3o_A	82	Huntingtin-associated protein-interacting protein;	98.93
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	98.86
1ri9_A	102	FYN-binding protein; SH3-like, helically extended,	98.86
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	98.85
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	98.82
2gtj_A	96	FYN-binding protein; SH3, redox, signaling protein	98.81
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	98.81
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	98.79
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	98.75
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	98.75
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	98.74
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	98.73
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	98.71
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	98.69
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	98.69
2gtj_A	96	FYN-binding protein; SH3, redox, signaling protein	98.68
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	98.63
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	98.62
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	98.58
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	98.53
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	98.52
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	98.51
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	98.47
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	98.42
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	98.4
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	98.39
3pe0_A	283	Plectin; cytoskeleton, plakin, spectrin repeat, SH	98.38
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	98.38
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	98.3
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	98.21
3r6n_A	450	Desmoplakin; spectrin repeat, SH3 domain, cell adh	97.98
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	97.82
3npf_A	306	Putative dipeptidyl-peptidase VI; structural genom	97.72
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	97.62
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	97.61
3pe0_A	283	Plectin; cytoskeleton, plakin, spectrin repeat, SH	97.61
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	97.51
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	97.47
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	97.33
3h41_A	311	NLP/P60 family protein; NLPC/P60 family protein, s	97.01
3r6n_A	450	Desmoplakin; spectrin repeat, SH3 domain, cell adh	96.96
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	96.92
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	96.5
2krs_A	74	Probable enterotoxin; all beta, SH3, ENTD, CPF_058	95.89
2kt8_A	76	Probable surface protein; SH3 family, structural g	95.84
2krs_A	74	Probable enterotoxin; all beta, SH3, ENTD, CPF_058	95.76
2kt8_A	76	Probable surface protein; SH3 family, structural g	95.71
2kq8_A	70	Cell WALL hydrolase; GFT protein structure, NESG,	95.57
2kq8_A	70	Cell WALL hydrolase; GFT protein structure, NESG,	94.65
1wfw_A	74	Kalirin-9A; SH3 domain, neuron-specific GDP/GTP ex	94.28
3npf_A	306	Putative dipeptidyl-peptidase VI; structural genom	92.27
1wfw_A	74	Kalirin-9A; SH3 domain, neuron-specific GDP/GTP ex	90.34
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	86.77
3h8z_A	128	FragIle X mental retardation syndrome-related Pro;	84.54
3m1u_A	434	Putative gamma-D-glutamyl-L-diamino acid endopept;	83.65
2y3a_B	302	Phosphatidylinositol 3-kinase regulatory subunit;	80.47

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=99.94  E-value=2.6e-27  Score=165.66  Aligned_cols=115  Identities=23%  Similarity=0.459  Sum_probs=101.6

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCCC-----------ccceecccc
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE-----------RPLQVTHNL   91 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~-----------~~~~~~~~~   91 (139)
                      ...++|+|+|.++.++||+|++||+|.|++..+++||.|+.+|+.||||.+|++.+....           ..+.+.++|
T Consensus        11 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~~~~~~p~~~~~~~~al~dy   90 (193)
T 1ng2_A           11 LQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDETEDPEPNYAGEPYVAIKAY   90 (193)
T ss_dssp             CEEEECSSCBCCSSTTCCCBCTTCEEEEEECCTTSCCEEEECCCCCCCCGGGCCCSSCSSCSCCCCCCTTCEEEEESSCB
T ss_pred             CcEEEEcCCcCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCeeeEechheEEeeccccccchhhccccceeeeecccc
Confidence            456999999999999999999999999999988999999999999999999999876432           235788899


Q ss_pred             ccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          92 QIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        92 ~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      . +..+++|+|.+||+|.+.....+|||.++. +|+.|+||++||+.+
T Consensus        91 ~-a~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~-~g~~G~~P~~yv~~~  136 (193)
T 1ng2_A           91 T-AVEGDEVSLLEGEAVEVIHKLLDGWWVIRK-DDVTGYFPSMYLQKS  136 (193)
T ss_dssp             C-CCSTTBCCBCTTCEEEEEECCTTSEEEEEE-TTEEEEEEGGGEEET
T ss_pred             C-CCCCCcccccCCCEEEEEEecCCCeEEEEE-CCCEEEEehHHeEEC
Confidence            6 788889999999999888777899999996 669999999999874

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=99.92  E-value=1.9e-24  Score=160.55  Aligned_cols=117  Identities=21%  Similarity=0.376  Sum_probs=98.5

Q ss_pred             CccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEecCCCC------------------
Q psy6450          22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIKVQPGE------------------   82 (139)
Q Consensus        22 ~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~~~------------------   82 (139)
                      ....++|+|+|.++.++||+|++||+|.|+++.+++||++++ +|+.|+||++||+.+....                  
T Consensus       133 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~~~~~~~~g~~~~~~~~~  212 (304)
T 2eyz_A          133 EAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASASVSALIGGNQEGSHPQP  212 (304)
T ss_dssp             CCCEEEECSCCCCSCSSSCCCCTTCEEEEEECCSSSEEEEECTTSCEEEEESTTEEECCCSTTSCCCCCCCSSCCSCCCS
T ss_pred             cceeEEEEeeecCCCCCcCcccCCCEEEEEEecCCCcEEEEeCCCceeccchhccccccCCCcccccccCCCcCCCCCCC
Confidence            345699999999999999999999999999998899999995 8999999999999764321                  


Q ss_pred             -------------------------ccceecccccc-ccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCE
Q psy6450          83 -------------------------RPLQVTHNLQI-ADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYL  136 (139)
Q Consensus        83 -------------------------~~~~~~~~~~~-~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v  136 (139)
                                               ...++.++|.. +..+++|+|.+||+|.+....++|||.++.. |+.|+||++||
T Consensus       213 ~~~~~p~~~~~p~~~~~~p~~~~~~~~~~al~d~~~~a~~~~eL~~~~Gd~i~v~~~~~~gWw~g~~~-g~~G~fP~~yv  291 (304)
T 2eyz_A          213 LGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECN-GKRGHFPFTHV  291 (304)
T ss_dssp             CSCCCSBTTBCSSSSCSSSCCSSCCCCSCCSSCBCCCTTCSSCCCBCTTSCCEEEEECTTSCEEEEET-TEEEECCCTTS
T ss_pred             CCCCCcccccccccccccCCCCCCCEEEEEeeeecCCCCCCCeecccCCCEEEEEEecCCCeEEEEEC-CceEEechHHE
Confidence                                     02456677752 5578899999999998887778999977764 69999999999


Q ss_pred             EeC
Q psy6450         137 QEV  139 (139)
Q Consensus       137 ~~~  139 (139)
                      +.+
T Consensus       292 ~~~  294 (304)
T 2eyz_A          292 RLL  294 (304)
T ss_dssp             CCC
T ss_pred             EEC
Confidence            864

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=99.90  E-value=9.5e-24  Score=149.67  Aligned_cols=113  Identities=23%  Similarity=0.427  Sum_probs=91.1

Q ss_pred             EEEEEeeecCCCCCCcccCCCCEEEEEECC-CCCeeEEEECCeEEEEcCCcEEecCCC----------------------
Q psy6450          25 LFVVLYNFKSRHADELDLKPGYKVTVIDTS-DQNWWKGKCMGRVGYFPSNYVIKVQPG----------------------   81 (139)
Q Consensus        25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~~----------------------   81 (139)
                      .++|+|+|.++.++||+|++||+|.|++.. +.+||.++.+|+.|+||.+|++.....                      
T Consensus         2 ~~~al~~~~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~~~g~~G~~P~~yv~~~~~~w~~g~isr~~ae~lL~~~~~~G   81 (217)
T 1gri_A            2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPWFFGKIPRAKAEEMLSKQRHDG   81 (217)
T ss_dssp             EEEECSCBCCCSSSCCCBCTTCEEEC------CCEEEEESSSCEEEEEGGGEECCCCSSBCTTCCHHHHHHHHHTCSSTT
T ss_pred             EEEEeeccCCcCCCcCCCCCCCEEEEEeccCCCCeEeeccCCccceECCcccccccchhhcccCCHHHHHHHHhccCCCc
Confidence            389999999999999999999999999876 578999999999999999999653210                      


Q ss_pred             ----------------------------------------------------------------------------Cccc
Q psy6450          82 ----------------------------------------------------------------------------ERPL   85 (139)
Q Consensus        82 ----------------------------------------------------------------------------~~~~   85 (139)
                                                                                                  ....
T Consensus        82 ~fLvR~S~~~~g~~~LSv~~~~~v~h~~I~~~~~g~~~~~~~~f~sl~eLv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  161 (217)
T 1gri_A           82 AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYV  161 (217)
T ss_dssp             CEEEEECSSSTTCEEEEEEETTEEEEEEEEECSSSCEESSSCEESSHHHHHHHHHHSCSSSSTTCCCCBCCCCCCCCCEE
T ss_pred             eEEEEccCCCCCCEEEEEEECCEEEEEEEEEcCCCCEEEeeeEcCCHHHHHHhhhccccccccceeecccccCCCCceEE
Confidence                                                                                        0123


Q ss_pred             eeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          86 QVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        86 ~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ++.++|. ++.+++|+|.+||+|.+....++|||.++. +|+.|+||++||+.+
T Consensus       162 ~al~~y~-~~~~~eL~~~~Gd~i~v~~~~~~~W~~g~~-~g~~G~~P~~yv~~~  213 (217)
T 1gri_A          162 QALFDFD-PQEDGELGFRRGDFIHVMDNSDPNWWKGAC-HGQTGMFPRNYVTPV  213 (217)
T ss_dssp             EESSCCC-CSSTTBCCCCTTCEEEEEECCSSSEEEEEC-SSCEEEEEGGGEEEE
T ss_pred             EecCCcc-CCCCCcCCCCCCCEEEEEEeCCCCeEEEEE-CCeEEEEeHHHeEEC
Confidence            4566774 677889999999999888877889999987 579999999999864

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=99.90  E-value=3.2e-24  Score=159.52  Aligned_cols=116  Identities=22%  Similarity=0.453  Sum_probs=51.1

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEE---ecCCC-----------------
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVI---KVQPG-----------------   81 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~---~~~~~-----------------   81 (139)
                      ...++|+|+|.++.+++|+|++||+|.|+++.+.+||++++ +|+.|+||.+||+   .+...                 
T Consensus       147 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~~~~~~~~~~ss~~ss~s~  226 (308)
T 3qwy_A          147 IEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQMEFHNDRTSKGASQSSIGSSGGG  226 (308)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEECTTSCEEEEEGGGEEEC-----------------------
T ss_pred             ceeEEEeceEcCCCCCcCcCCCCCEEEEEEcCCCCeEEEEeCCCCeeEecccccccccccccCccccccccCCCCCcccc
Confidence            34699999999999999999999999999998899999997 8999999999999   22211                 


Q ss_pred             --------------------Cccceecccccc-ccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          82 --------------------ERPLQVTHNLQI-ADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        82 --------------------~~~~~~~~~~~~-~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                                          ....++.++|.. +..++||+|.+||+|.+.....+|||. ...+|++|+||++|||.|
T Consensus       227 p~p~s~ps~~sp~p~~~~~~~~~a~alyd~~~~~~~~~ELs~~~Gd~i~v~~~~~~~ww~-g~~~g~~G~fP~~yv~~~  304 (308)
T 3qwy_A          227 AERFSSASTSSDNIELQPRLPAKAKVTFDRVPNAYDPTQLRVKKGQTVLVTQKMSNGMYK-AELDGQIGSVPHTYLRFT  304 (308)
T ss_dssp             -------------------------------------------------------------------------------
T ss_pred             ccccccccccCcccccccccccccccccccccccCCcccceeCCCCEEEEEEEcCCCcEE-EEECCeeEEechHHeEEe
Confidence                                112355667742 334588999999999888888899994 445779999999999975

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=99.82  E-value=5e-25  Score=163.54  Aligned_cols=116  Identities=23%  Similarity=0.408  Sum_probs=97.0

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEecCCCC-------------------
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIKVQPGE-------------------   82 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~~~-------------------   82 (139)
                      ...++|+|+|.++.++||+|++||+|.|+++.+++||.+++ +|+.||||++||+.+....                   
T Consensus       125 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~~~~~~~~~~~~s~~~~~~~~p~~s  204 (303)
T 2lqn_A          125 LEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSSPHGKHGNRNSNSYGIPEPA  204 (303)
Confidence            34699999999999999999999999999998889999996 8999999999998765321                   


Q ss_pred             ---------------------------------ccceecccccc-ccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeE
Q psy6450          83 ---------------------------------RPLQVTHNLQI-ADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQ  128 (139)
Q Consensus        83 ---------------------------------~~~~~~~~~~~-~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~  128 (139)
                                                       ..+++.++|.. +..+++|+|.+||+|.+.....+|||.++. +|+.
T Consensus       205 ~~~~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~-~g~~  283 (303)
T 2lqn_A          205 HAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEV-NGRK  283 (303)
Confidence                                             12456677751 333668999999999888888899997765 6699


Q ss_pred             EeeecCCEEeC
Q psy6450         129 GVCPLKYLQEV  139 (139)
Q Consensus       129 G~~P~~~v~~~  139 (139)
                      |+||++||+.+
T Consensus       284 G~fP~~yv~~~  294 (303)
T 2lqn_A          284 GLFPFTHVKIF  294 (303)
Confidence            99999999875

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=99.80  E-value=1.1e-20  Score=142.19  Aligned_cols=118  Identities=17%  Similarity=0.316  Sum_probs=90.0

Q ss_pred             CCccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCCCccc---------------
Q psy6450          21 LPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERPL---------------   85 (139)
Q Consensus        21 ~~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~~~~---------------   85 (139)
                      .....++|+|+|.++.++||+|++||+|.|+++.+++||.|+.+|+.|+||++||+.+.......               
T Consensus       172 ~~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~~~~~~~~~~~~~~~~~~  251 (341)
T 2dyb_A          172 MAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFPEEDDPTNWLRCYYYEDTI  251 (341)
T ss_dssp             CCCCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEEECCCCTTCCCEEEEEEEECSSC
T ss_pred             cCCcEEEEEEeeCCCCCCcCCccCCCEEEEEEecCCCEEEEEECCcEEEechHHeEEcCCCCccccccccccccccCCCC
Confidence            34556999999999999999999999999999988999999999999999999999764321100               


Q ss_pred             ------------------eecccccc---ccCCCceee--ecCcEEEEEcceeCCEEEEEeC--CCeEEeeecC-CEEe
Q psy6450          86 ------------------QVTHNLQI---ADGESGLSL--LRDQIVIQIGDEVDGMVMIRNG--ENRQGVCPLK-YLQE  138 (139)
Q Consensus        86 ------------------~~~~~~~~---~~~~~~l~~--~~g~~v~~~~~~~~g~~~~~~~--~~~~G~~P~~-~v~~  138 (139)
                                        ++.++|..   ...+.+|.+  .+||+|.+....++|||.++..  .|++|+||.+ +|+.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~a~yd~~~~~~~~~e~eL~~~~~~GD~I~v~~~~d~gWw~Ge~~g~~G~~glfP~~~~v~~  330 (341)
T 2dyb_A          252 STIKDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFPWKLHITQ  330 (341)
T ss_dssp             EEEEEEEECSCTTCCCCHHHHHHHHHHHHTCSCEEEEEECSSSCEEECCSHHHHHHHHHHHTTSCCBTTBCSSCEEEEE
T ss_pred             ccccccccccccCCCcchhhhhhhhhhhcCCCcccccCCCCCCCEEEEeeecCCCEeEEEECCCCCCCceecceeEEEe
Confidence                              11222221   133444555  7999999888889999976632  3567799999 7664

>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}

Probab=99.74  E-value=2.4e-18  Score=98.40  Aligned_cols=56  Identities=29%  Similarity=0.639  Sum_probs=51.2

Q ss_pred             ccEEEEEeeecCCCCCC-cccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEec
Q psy6450          23 TNLFVVLYNFKSRHADE-LDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIKV   78 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~e-Ls~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~   78 (139)
                      ...|+|+|+|.++.++| |+|++||+|.|+++.+++||.|++ +|++|+||++||+.+
T Consensus         3 g~~~rAlydy~~~~~~e~Ls~~~Gd~i~v~~~~~~~Ww~g~~~~G~~G~fP~nyVe~i   60 (60)
T 2lx7_A            3 GARCRTLYPFSGERHGQGLRFAAGELITLLQVPDGGWWEGEKEDGLRGWFPASYVQLL   60 (60)
T ss_dssp             SCEEEESCCCCSCCCSSCCCCCTTCEEEBSCCCTTSCEEEECTTSCEEEECGGGEEEC
T ss_pred             CCEEEECcccCCCCCCCCccCCCCCEEEEeEecCCCeEEEEeCCCCEEEEcHHHEEEC
Confidence            35699999999998887 999999999999998899999998 789999999999864

>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A

Probab=99.73  E-value=2.1e-17  Score=96.05  Aligned_cols=56  Identities=32%  Similarity=0.672  Sum_probs=51.9

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEecC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIKVQ   79 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~   79 (139)
                      ..++|+|+|.++.++||+|++||+|.|++..+++||.|++  +|+.|+||++||+++.
T Consensus         7 ~~~~Alydy~a~~~~ELs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~nyVe~l~   64 (65)
T 2lj0_A            7 FSYQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKPLY   64 (65)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEETTSEEECC
T ss_pred             EEEEEceeECCCCcCCcCCCCCCEEEEeEeCCCCEEEEEECCCCCEEEEehhHeEEEe
Confidence            3589999999999999999999999999998899999998  6899999999999763

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}

Probab=99.68  E-value=1.3e-16  Score=91.26  Aligned_cols=57  Identities=30%  Similarity=0.721  Sum_probs=52.7

Q ss_pred             CccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEec
Q psy6450          22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV   78 (139)
Q Consensus        22 ~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   78 (139)
                      +...++|+|+|.++.+++|+|++||+|.|+++.+++||.++++|+.|+||++|++.+
T Consensus         4 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   60 (60)
T 2xmf_A            4 GSPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTKI   60 (60)
T ss_dssp             CSCEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CCcEEEECccCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCEEEEEcHHHEEEC
Confidence            345699999999999999999999999999988899999999999999999999864

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}

Probab=99.68  E-value=2e-16  Score=91.99  Aligned_cols=58  Identities=31%  Similarity=0.596  Sum_probs=53.7

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      ..++|+|+|.++.+++|+|++||+|.|++..+++||.|+.+|+.|+||++|++.+...
T Consensus         2 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~~   59 (65)
T 2nwm_A            2 KAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVLPLE   59 (65)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEECCTTTCEEEEETTEEEEECGGGEEECCCC
T ss_pred             cEEEEeeeECCCCcCccCCcCCCEEEEEEecCCCEEEEEECCcEEEEehhhEEEcCCC
Confidence            3589999999999999999999999999998899999999999999999999987643

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A

Probab=99.68  E-value=1.7e-16  Score=90.42  Aligned_cols=56  Identities=34%  Similarity=0.767  Sum_probs=52.1

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEec
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV   78 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   78 (139)
                      ...++|+|+|.++.+++|+|++||+|.|+++.+++||.++.+|+.|+||++|++.+
T Consensus         4 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   59 (59)
T 2g6f_X            4 GSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI   59 (59)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CcEEEECceeCCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEC
Confidence            34699999999999999999999999999988899999999999999999999864

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A

Probab=99.67  E-value=2e-16  Score=89.77  Aligned_cols=56  Identities=30%  Similarity=0.704  Sum_probs=52.1

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEec
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV   78 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   78 (139)
                      ...++|+|+|.++.+++|+|++||+|.|+++.+++||.++.+|+.|+||++|++.+
T Consensus         3 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~l   58 (58)
T 2drm_A            3 GIQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI   58 (58)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CcEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEC
Confidence            34699999999999999999999999999998899999999999999999999864

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}

Probab=99.67  E-value=1.8e-16  Score=90.04  Aligned_cols=54  Identities=35%  Similarity=0.811  Sum_probs=51.5

Q ss_pred             EEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecC
Q psy6450          26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQ   79 (139)
Q Consensus        26 ~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   79 (139)
                      ++|+|+|.++.+++|+|++||+|.|++..+++||.++.+|+.|+||++|++.+.
T Consensus         4 ~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   57 (58)
T 2bz8_A            4 AIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREIK   57 (58)
T ss_dssp             EEESSCBCCCSTTBCCBCTTCEEEEEECCTTTEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEECcccCCCCcCEeeECCCCEEEEEEeCCCCEEEEEECCeEEEEehHHeEEcC
Confidence            899999999999999999999999999988999999999999999999998764

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A

Probab=99.67  E-value=2.4e-16  Score=89.51  Aligned_cols=56  Identities=36%  Similarity=0.796  Sum_probs=52.3

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQ   79 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   79 (139)
                      .+++|+|+|.++.+++|+|++||+|.|++..+++||.++.+|+.|+||++|++.+.
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   57 (58)
T 1uti_A            2 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPMM   57 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             eEEEECccCCCCCcCCCCCCCCCEEEEEEECCCCEEEEEECCeEEEeeHHHeEEcc
Confidence            35899999999999999999999999999988999999999999999999998753

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A

Probab=99.67  E-value=2.5e-16  Score=90.07  Aligned_cols=55  Identities=24%  Similarity=0.512  Sum_probs=52.0

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEec
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV   78 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   78 (139)
                      ..++|+|+|.++.+++|+|++||+|.|++..+++||.++.+|+.|+||++|++.+
T Consensus         5 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~l   59 (60)
T 1w70_A            5 MRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKIL   59 (60)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEECccCCcCCCCCccCCCCCEEEEEEeCCCCeEEEEECCCEEEechHHEEEC
Confidence            4599999999999999999999999999988899999999999999999999875

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A

Probab=99.67  E-value=3.1e-16  Score=90.95  Aligned_cols=55  Identities=36%  Similarity=0.809  Sum_probs=51.8

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEec
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV   78 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   78 (139)
                      ..++|+|+|.++.+++|+|++||+|.|+++.+++||.++.+|+.|+||++|++.+
T Consensus        10 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   64 (65)
T 3ulr_B           10 ITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELR   64 (65)
T ss_dssp             SCEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEEEeeECCCCcCEeeEecCCEEEEEEecCCCEEEEEECCcEEEEehHHeEEC
Confidence            3499999999999999999999999999998889999999999999999999875

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A

Probab=99.67  E-value=2.9e-16  Score=89.11  Aligned_cols=55  Identities=38%  Similarity=0.802  Sum_probs=51.9

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEec
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV   78 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   78 (139)
                      ..++|+|+|.++.+++|+|++||+|.|++..+++||.++.+|+.|+||++|++.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 1sem_A            3 KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPY   57 (58)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEECcCCCCCCCCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEechHHeEEC
Confidence            4589999999999999999999999999998889999999999999999999865

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=3.8e-16  Score=91.51  Aligned_cols=59  Identities=36%  Similarity=0.929  Sum_probs=54.5

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      ...++|+|+|.++.++||+|++||+|.|+++.+++||+++.+|+.|+||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 2dl4_A            7 GNTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRLSGP   65 (68)
T ss_dssp             CCEEEESSCCCCSSTTBCCCCTTCEEEEEECCCSSEEEEECSSCEEEEETTTEEECCCC
T ss_pred             CCEEEEeeeECCCCcCCcCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHeEECCCC
Confidence            45699999999999999999999999999998899999999999999999999987653

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}

Probab=99.67  E-value=5e-16  Score=90.93  Aligned_cols=58  Identities=22%  Similarity=0.469  Sum_probs=54.0

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   80 (139)
                      ...++|+|+|.++.+++|+|++||+|.|+++.+++||.++.+|+.|+||++||+.+..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 2djq_A            7 GPRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEVISG   64 (68)
T ss_dssp             CCEEEECSCCCSCCTTCCCCCTTCEEEEEECCCSSEEEEEETTEEEEEESSSEETTCS
T ss_pred             ceEEEECCCCCCCCcCCccCCCCCEEEEEEecCCCEEEEEECCcEEEeehHHEEEcCC
Confidence            4569999999999999999999999999999889999999999999999999987764

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}

Probab=99.67  E-value=2.7e-16  Score=92.19  Aligned_cols=58  Identities=34%  Similarity=0.663  Sum_probs=53.4

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      ..++|+|+|.++.+++|+|++||+|.|++..+++||.|+.+|+.|+||++||+.+...
T Consensus         4 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   61 (68)
T 2ew3_A            4 PCCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVIVPL   61 (68)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEESSSSEEEEEETTEEEEEEGGGEEESCC-
T ss_pred             CEEEEeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEEECCcEEEeeHHHEEEcCcc
Confidence            4599999999999999999999999999988899999999999999999999987643

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A

Probab=99.66  E-value=2.7e-16  Score=89.32  Aligned_cols=55  Identities=40%  Similarity=0.869  Sum_probs=51.7

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEec
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV   78 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   78 (139)
                      ..++|+|+|.++.+++|+|++||+|.|+++.+++||.++.+|+.|+||++|++.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 1zx6_A            3 EYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVKPA   57 (58)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEECceECCCCCCCccCCCCCEEEEEEecCCCEEEEEECCcEEEeeHHHEEEc
Confidence            4689999999999999999999999999988899999999999999999999864

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A

Probab=99.66  E-value=4.9e-16  Score=92.27  Aligned_cols=59  Identities=27%  Similarity=0.385  Sum_probs=53.8

Q ss_pred             ccEEEEEeeecCC--CCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          23 TNLFVVLYNFKSR--HADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        23 ~~~~~al~~~~~~--~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      ...++|+|+|.+.  .++||+|++||+|.|+++.+++||+++.+|+.|+||++||+.+...
T Consensus         9 ~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~   69 (73)
T 2ebp_A            9 CGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVLSSG   69 (73)
T ss_dssp             SEEEEECSCBCCCTTCCSBCCBCSSCEEEEEECCSSSCEEEECSSCEEEECSTTEEECCCC
T ss_pred             ceEEEEeeccCCCCCCCCccCCCCCCEEEEEEeCCCCeEEEEECCCEEEEeHHHEEECCCC
Confidence            3469999999976  9999999999999999998899999999999999999999987653

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.66  E-value=3.8e-16  Score=91.51  Aligned_cols=58  Identities=29%  Similarity=0.508  Sum_probs=54.0

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   80 (139)
                      ..+++|+|+|.++.++||+|++||+|.|+++.+++||.++.+|+.|+||++||+.+..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 2dmo_A            7 GEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPVSG   64 (68)
T ss_dssp             SEEEEECSSCCCCSSSSCCCCTTCEEEECEECSSSCEEEEETTEEEEECSTTEEECCC
T ss_pred             CCEEEECcCCCcCCcCCCCCCCCCEEEEEEeCCCCEEEEEeCCCEEEeehHHeEECCC
Confidence            4569999999999999999999999999998888999999999999999999998764

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A

Probab=99.66  E-value=4.1e-16  Score=90.25  Aligned_cols=58  Identities=34%  Similarity=0.776  Sum_probs=53.7

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   80 (139)
                      ...++|+|+|.++.+++|+|++||+|.|++..+++||.++.+|+.|+||++|++.+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   63 (64)
T 2ak5_A            6 QLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREIKP   63 (64)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEECCC
T ss_pred             CEEEEEccccCCcCcCcccCCCCCEEEEeEecCCCEEEEEECCCEEEEehHHeEEcCC
Confidence            3469999999999999999999999999998889999999999999999999998753

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A

Probab=99.66  E-value=3.3e-16  Score=89.51  Aligned_cols=56  Identities=36%  Similarity=0.785  Sum_probs=51.4

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECC--CCCeeEEEECCeEEEEcCCcEEec
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTS--DQNWWKGKCMGRVGYFPSNYVIKV   78 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~   78 (139)
                      ...++|+|+|.++.+++|+|++||+|.|++..  +++||.++.+|+.|+||++|++.+
T Consensus         3 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   60 (60)
T 1oot_A            3 SPKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV   60 (60)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             ccEEEECccCCcCCcCEeeEcCCCEEEEEEeCCCCCCeEEEEECCEEEEEeHHHEEEC
Confidence            34699999999999999999999999999986  679999999999999999999764

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A

Probab=99.66  E-value=3.9e-16  Score=90.31  Aligned_cols=56  Identities=27%  Similarity=0.738  Sum_probs=51.6

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECC--CCCeeEEEECCeEEEEcCCcEEec
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTS--DQNWWKGKCMGRVGYFPSNYVIKV   78 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~   78 (139)
                      ...++|+|+|.++.+++|+|++||+|.|+++.  +++||.|+.+|+.|+||++|++.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~l   63 (64)
T 2jte_A            6 KEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQI   63 (64)
T ss_dssp             SEEEEESSCBCCSSSSBCCBCTTCEEEEEESCSSSTTEEEEEETTEEEEEEGGGEEEC
T ss_pred             CEEEEECccCCccCCCccCCCCCCEEEEEECCCCCCCEEEEEECCeEEEEeHHHEEEC
Confidence            35699999999999999999999999999875  679999999999999999999875

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A

Probab=99.66  E-value=7.2e-16  Score=94.25  Aligned_cols=58  Identities=33%  Similarity=0.798  Sum_probs=52.9

Q ss_pred             CccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEecCC
Q psy6450          22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        22 ~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~   80 (139)
                      ....++|+|+|.++.+++|+|++||+|.|+++. ++||++++  +|+.|+||++|++.+..
T Consensus        24 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~~~~   83 (86)
T 2oi3_A           24 EDIIVVALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVDS   83 (86)
T ss_dssp             TSEEEEESSCCCCSSSSCCCCCTTCEEEEEEES-SSEEEEEETTTCCEEEEEGGGEEEGGG
T ss_pred             CCcEEEECccCCCCCCCcCcCCCCCEEEEEEcC-CCeEEEEECCCCCEEEEehHHcEEccc
Confidence            345799999999999999999999999999987 69999999  89999999999998754

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A

Probab=99.66  E-value=4.1e-16  Score=91.68  Aligned_cols=58  Identities=36%  Similarity=0.770  Sum_probs=53.3

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECC--CCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTS--DQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      ..++|+|+|.++.++||+|++||+|.|+++.  +++||.++.+|+.|+||++||+.+...
T Consensus         3 ~~~~Alydy~a~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~~P~~yV~~~~~~   62 (69)
T 2ydl_A            3 DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPL   62 (69)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEESCCSSTTEEEEEETTEEEEEEGGGEEECCSC
T ss_pred             cEEEEcccCCCCCCCccccCCCCEEEEEEcCCCCCCEEEEEECCcEEEecHHHEEECCCC
Confidence            4589999999999999999999999999985  789999999999999999999987643

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}

Probab=99.66  E-value=2.1e-16  Score=93.81  Aligned_cols=66  Identities=24%  Similarity=0.527  Sum_probs=58.6

Q ss_pred             EEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCCC--ccceeccccc
Q psy6450          26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE--RPLQVTHNLQ   92 (139)
Q Consensus        26 ~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~--~~~~~~~~~~   92 (139)
                      ++|+|+|.+ .++||+|++||+|.|+++.+++||.++.+|+.|+||++|++.+....  ....+.++|.
T Consensus         3 a~alydy~~-~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~~~~~~alydy~   70 (73)
T 2kxd_A            3 APPLPPYSA-GGREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKELVLALYDYQ   70 (73)
T ss_dssp             CCCCCSSCC-CSCCCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECCSSCCSCEEEESSCBC
T ss_pred             EEEeeeeCC-CCCEeeEcCCCEEEEEEecCCCEEEEEECCCEEEEehHHeEEcCCCCCCceEEEecccc
Confidence            689999998 89999999999999999988999999999999999999999886543  3566778875

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.66  E-value=1.4e-16  Score=91.62  Aligned_cols=57  Identities=21%  Similarity=0.596  Sum_probs=52.7

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQ   79 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   79 (139)
                      ...++|+|+|.++.+++|+|++||+|.|++..+++||.++.+|+.|+||++|++.+.
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   61 (62)
T 1k4u_S            5 GSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDSA   61 (62)
T ss_dssp             CEEEECCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEECSSCEEEECGGGCCCSC
T ss_pred             CeEEEECCCCCcCCCCCccCCCCCEEEEEEeCCCCEEEEEECCcEEEEeHHHEEECC
Confidence            346999999999999999999999999999988899999999999999999998754

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A

Probab=99.65  E-value=4.7e-16  Score=88.24  Aligned_cols=55  Identities=42%  Similarity=0.913  Sum_probs=51.8

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEec
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV   78 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   78 (139)
                      ..++|+|+|.++.+++|+|++||+|.|+++.+++||.++++|+.|+||++|++.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 2vwf_A            3 TYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTAV   57 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEECceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEEECCcEEEEchHHeEEC
Confidence            3589999999999999999999999999998889999999999999999999875

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...

Probab=99.65  E-value=5.1e-16  Score=89.19  Aligned_cols=56  Identities=32%  Similarity=0.809  Sum_probs=52.5

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEec
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV   78 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   78 (139)
                      ...++|+|+|.++.+++|+|++||+|.|+++.+++||.++.+|+.|+||++|++.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~g~~G~~P~~yv~~~   61 (62)
T 3ngp_A            6 KELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKKL   61 (62)
T ss_dssp             CCEEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CEEEEECcCCCCCCCCCccCCCCCEEEEeEecCCCeEEEEECCEEEEEEHHHEEEC
Confidence            35699999999999999999999999999998899999999999999999999875

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}

Probab=99.65  E-value=4.5e-16  Score=92.41  Aligned_cols=59  Identities=31%  Similarity=0.649  Sum_probs=54.5

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      ...++|+|+|.++.+++|+|++||+|.|+++.+++||.++.+|+.|+||++|++.+.+.
T Consensus        13 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   71 (73)
T 3c0c_A           13 QPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQVLVPL   71 (73)
T ss_dssp             SCEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEEECC
T ss_pred             CeEEEECccCCCCCCCCccCcCCCEEEEEEecCCCEEEEEECCCEEEeChHHEEECCCC
Confidence            45699999999999999999999999999988899999999999999999999987653

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=1.1e-15  Score=91.86  Aligned_cols=57  Identities=32%  Similarity=0.682  Sum_probs=53.5

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   80 (139)
                      ..++|+|+|.++.++||+|++||+|.|+++.+++||+++.+|+.|+||.+||+.+..
T Consensus        18 ~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~   74 (78)
T 2ed0_A           18 EKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESISG   74 (78)
T ss_dssp             EEEEECSCBCCSSTTBCCBCSSCEEEEEEECSSSEEEEEETTEEEEEETTSEEECSS
T ss_pred             EEEEECccCCccCcCcccccCCCEEEEEEeCCCCEEEEEECCcEEEeChHHEEEcCC
Confidence            469999999999999999999999999999888999999999999999999998764

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A

Probab=99.65  E-value=3.7e-16  Score=89.91  Aligned_cols=56  Identities=29%  Similarity=0.697  Sum_probs=51.7

Q ss_pred             EEEEEeeecCCCCCCcccCCCCEEEEEEC-CCCCeeEEEECCeEEEEcCCcEEecCC
Q psy6450          25 LFVVLYNFKSRHADELDLKPGYKVTVIDT-SDQNWWKGKCMGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~-~~~~w~~~~~~g~~G~~P~~~v~~~~~   80 (139)
                      .++|+|+|.++.+++|+|++||+|.|+++ .+++||.|+.+|+.|+||++|++.+..
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   59 (62)
T 2j6f_A            3 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKR   59 (62)
T ss_dssp             CEEECSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEEETTEEEEEEGGGEEECC-
T ss_pred             EEEECccCCcCCcCCcCCcCCCEEEEEEecCCCCEEEEEECCcEEEechHHEEECCC
Confidence            38999999999999999999999999998 778999999999999999999998764

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A

Probab=99.65  E-value=3.9e-16  Score=88.66  Aligned_cols=53  Identities=32%  Similarity=0.627  Sum_probs=50.3

Q ss_pred             EEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEEC--CeEEEEcCCcEEec
Q psy6450          26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV   78 (139)
Q Consensus        26 ~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~--g~~G~~P~~~v~~~   78 (139)
                      ++|+|+|.++.+++|+|++||+|.|+++.+++||.+++.  |+.|+||++|++.+
T Consensus         3 ~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   57 (58)
T 1jo8_A            3 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG   57 (58)
T ss_dssp             EEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EEECceECCCCCCCcccCCCCEEEEEEecCCCcEEEEECCCCCEEEechHHeEEC
Confidence            899999999999999999999999999988999999996  99999999999865

>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}

Probab=99.65  E-value=4.2e-16  Score=92.13  Aligned_cols=58  Identities=31%  Similarity=0.613  Sum_probs=53.4

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   80 (139)
                      ...++|+|+|.++.+++|+|++||+|.|+++.+++||.++.+|+.|+||.+|++.+..
T Consensus        13 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   70 (72)
T 4glm_A           13 LTYGVALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRFVKLCPA   70 (72)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEECSTTEEEEEETTEEEEEEGGGEEEEC-
T ss_pred             CeEEEECccCCCCCCCcCCCCCCCEEEEEEccCCCEEEEEECCcEEEEChHHeEECCC
Confidence            4569999999999999999999999999998888999999999999999999998753

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A

Probab=99.65  E-value=4.4e-16  Score=90.96  Aligned_cols=57  Identities=25%  Similarity=0.335  Sum_probs=53.1

Q ss_pred             EEEEEeeecCC--CCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          25 LFVVLYNFKSR--HADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        25 ~~~al~~~~~~--~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      .++|+|+|.++  .+++|+|++||+|.|+++.+++||.|+.+|+.|+||++||+.+...
T Consensus         3 ~~~al~dy~~~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~~   61 (67)
T 2bzy_A            3 FAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQ   61 (67)
T ss_dssp             EEEECSCBCSEEECTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEECCSC
T ss_pred             EEEEeeeECCCCCCCCccccCCCCEEEEEEecCCCeEEEEeCCcEEEEehHHeEECCCc
Confidence            58999999998  9999999999999999988899999999999999999999987654

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}

Probab=99.65  E-value=6.1e-16  Score=93.41  Aligned_cols=59  Identities=20%  Similarity=0.364  Sum_probs=53.9

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCC-eeEEEECCeEEEEcCCcEEecCCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQN-WWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~-w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      ...++|+|+|.++..+||+|++||+|.|+++.+++ ||.|+.+|+.|+||.+||+.+...
T Consensus        10 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~   69 (80)
T 2i0n_A           10 AKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEILLSD   69 (80)
T ss_dssp             CCEEEESSCBCCCSSSSCCBCSSEEEEEEEESSSSSEEEEEETTEEEEEEGGGEEEESSC
T ss_pred             CeEEEECCCCCcCCCCCcCCCCCCEEEEEEecCCCCEEEEEECCcEEEechHHEEECCCC
Confidence            35699999999999999999999999999987777 999999999999999999987654

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=1.2e-15  Score=93.72  Aligned_cols=58  Identities=24%  Similarity=0.317  Sum_probs=53.0

Q ss_pred             cEEEEEeeecCC--CCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          24 NLFVVLYNFKSR--HADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        24 ~~~~al~~~~~~--~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      .+++|+|+|.+.  .+++|+|++||+|.|+++.+.+||+|+.+|+.|+||++||+.+...
T Consensus        17 ~~~~alydy~~~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~~   76 (88)
T 2dbk_A           17 VFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQ   76 (88)
T ss_dssp             EEEEECSCBCCCTTCSSBCCBCTTCEEEEEEECTTSCEEEECSSCEEEECTTTEEECCSS
T ss_pred             EEEEEcccccCCCCCCCcccCCCCCEEEEEEecCCCEEEEEeCCCEEEEehHHeEECCCC
Confidence            469999999954  9999999999999999998899999999999999999999988654

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=6.6e-16  Score=90.42  Aligned_cols=58  Identities=26%  Similarity=0.564  Sum_probs=53.7

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   80 (139)
                      ...++|+|+|.++.+++|+|++||+|.|+++.+++||+++..|+.|+||++|++.+..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 1x2p_A            7 GEEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGKHSG   64 (68)
T ss_dssp             CCEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEECTTCCEEEESSSEECCCC
T ss_pred             CCEEEECceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEEECCeEEEEehHHeEECCC
Confidence            3569999999999999999999999999999889999999999999999999987654

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}

Probab=99.64  E-value=6.6e-16  Score=87.68  Aligned_cols=54  Identities=46%  Similarity=0.906  Sum_probs=51.0

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEe
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIK   77 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~   77 (139)
                      ..++|+|+|.++.+++|+|++||+|.|++..+++||.++.+|+.|+||++|+++
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   57 (58)
T 1zlm_A            4 KVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE   57 (58)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEE
T ss_pred             EEEEECccCCCCCCCCccCCCCCEEEEEEeCCCCEEEEEECCCEEEEehHHEEe
Confidence            468999999999999999999999999999888999999999999999999975

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=6e-16  Score=93.40  Aligned_cols=58  Identities=34%  Similarity=0.764  Sum_probs=52.8

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCC--CCeeEEEECCeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSD--QNWWKGKCMGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~--~~w~~~~~~g~~G~~P~~~v~~~~~   80 (139)
                      ...++|+|+|.++.++||+|++||+|.|+++.+  .+||+++++|+.|+||.+||+.+..
T Consensus        17 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   76 (80)
T 2d8h_A           17 PIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTMNSG   76 (80)
T ss_dssp             CEEEECSSCEECSSTTBCEECTTCEEEEEECCSCSSSEEEEEETTEEEEEEGGGCCBCCC
T ss_pred             CEEEEECccCCcCCCCeeeEcCCCEEEEeECcCCCCCeEEEEECCEEEEEchhHeEEcCC
Confidence            456999999999999999999999999999875  7999999999999999999987653

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A

Probab=99.64  E-value=7e-16  Score=87.46  Aligned_cols=55  Identities=36%  Similarity=0.816  Sum_probs=51.4

Q ss_pred             EEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecC
Q psy6450          25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQ   79 (139)
Q Consensus        25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   79 (139)
                      .++|+|+|.++.+++|+|++||+|.|+++.+++||.+..+|+.|+||++|+++..
T Consensus         3 ~a~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   57 (58)
T 4e6r_A            3 PAFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVLEEV   57 (58)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEECccCCCCCCCEeeEeCCCEEEEeEcCCCCEEEEEECCcEEEEehHHEEECC
Confidence            4899999999999999999999999999988899999889999999999998753

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.64  E-value=8e-16  Score=92.67  Aligned_cols=58  Identities=31%  Similarity=0.802  Sum_probs=53.2

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCC----CCeeEEEECCeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSD----QNWWKGKCMGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~----~~w~~~~~~g~~G~~P~~~v~~~~~   80 (139)
                      ...++|+|+|.++.++||+|++||+|.|+++.+    .+||+++.+|+.|+||++||+.+..
T Consensus        13 ~~~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   74 (79)
T 1uhc_A           13 NQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTES   74 (79)
T ss_dssp             SCCEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESSSCEEEEEGGGEEECCS
T ss_pred             CeEEEECccCCCCCCCccCCCCCCEEEEEECCCCCCCCCeEEEEeCCCEEEEchHHeEECCC
Confidence            446999999999999999999999999999876    7999999999999999999998754

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=1.5e-15  Score=90.08  Aligned_cols=59  Identities=29%  Similarity=0.696  Sum_probs=53.6

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEEC---CCCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDT---SDQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~---~~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      ...++|+|+|.++.++||+|++||+|.|+++   .+++||+++.+|+.|+||.+||+.+...
T Consensus         8 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   69 (73)
T 2dl7_A            8 VCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEELSSG   69 (73)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEECCCSSSSSCEEEEETTEEEEECSSSEEECCSS
T ss_pred             CEEEEECccCCcCCCCcCCCCCCCEEEEEECCCCCCCCcEEEEECCCEEEEChHHEEECCCC
Confidence            3469999999999999999999999999997   4679999999999999999999987654

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}

Probab=99.64  E-value=1.2e-15  Score=90.50  Aligned_cols=58  Identities=36%  Similarity=0.796  Sum_probs=53.5

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECC--CCCeeEEEECCeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTS--DQNWWKGKCMGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~~~   80 (139)
                      ..+++|+|+|.++.+++|+|++||+|.|++..  +++||.|+.+|+.|+||++||+.+..
T Consensus         9 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   68 (73)
T 2k9g_A            9 KDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPP   68 (73)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSTTEEEEEETTEEEEEEGGGEEECCS
T ss_pred             ccEEEECccCCCCCCCeeeECCCCEEEEEECCCCCCCEEEEEECCeEEEEchHHEEECCc
Confidence            45699999999999999999999999999985  78999999999999999999998764

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=9e-16  Score=90.85  Aligned_cols=58  Identities=22%  Similarity=0.573  Sum_probs=53.6

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      ..++|+|+|.++.+++|+|++||+|.|+++.+++||+++++|+.|+||++||+.+...
T Consensus        10 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   67 (72)
T 2dl8_A           10 IEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQDTS   67 (72)
T ss_dssp             EEEEESSCBCCSSSSBCCBCTTCEEEEEEEEETTEEEEEETTEEEEECSSSEEECCSS
T ss_pred             EEEEECccCCcCCCCEeccCCCCEEEEEeecCCCEEEEEECCEEEEEchHHeEEcCCC
Confidence            4699999999999999999999999999988889999999999999999999987643

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A

Probab=99.64  E-value=7.4e-16  Score=88.33  Aligned_cols=56  Identities=29%  Similarity=0.696  Sum_probs=51.6

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEE-EEcCCcEEecC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVG-YFPSNYVIKVQ   79 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G-~~P~~~v~~~~   79 (139)
                      ..++|+|+|.++.+++|+|++||+|.|++..+++||.++..++.| +||++|++.+.
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~gG~~P~~yv~~~~   60 (61)
T 1y0m_A            4 SAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEMI   60 (61)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEEGGGEEECC
T ss_pred             CEEEECcCCCcCCCCCcCCcCCCEEEEEEecCCCEEEEEECCeEEEEEChHHcEECC
Confidence            458999999999999999999999999999888999999988876 99999998764

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1

Probab=99.64  E-value=6e-16  Score=89.92  Aligned_cols=57  Identities=25%  Similarity=0.607  Sum_probs=52.2

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEecCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~   80 (139)
                      ..++|+|+|.++.+++|+|++||+|.|++..+++||+++. +|+.|+||++|++.+..
T Consensus         4 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~   61 (65)
T 1b07_A            4 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYHH   61 (65)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEECC-
T ss_pred             eEEEECCcCCCCCCCccCCcCCCEEEEEEecCCCeEEEEECCCCEEEEChHHEeecCC
Confidence            4589999999999999999999999999998899999995 89999999999988654

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*

Probab=99.64  E-value=8e-16  Score=91.22  Aligned_cols=56  Identities=38%  Similarity=0.904  Sum_probs=52.4

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEec
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIKV   78 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~   78 (139)
                      ...++|+|+|.++.+++|+|++||+|.|+++.+.+||.++.  +|+.|+||.+|++++
T Consensus        15 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   72 (73)
T 3h0h_A           15 VTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV   72 (73)
T ss_dssp             TCEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CEEEEECccCCCCCCCcceEeCCCEEEEEEecCCCeEEEEECCCCCEEEEEHHHeEEC
Confidence            45699999999999999999999999999988889999999  899999999999875

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A

Probab=99.64  E-value=8.4e-16  Score=91.21  Aligned_cols=59  Identities=32%  Similarity=0.614  Sum_probs=54.5

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      ...++|+|+|.++.+++|+|++||+|.|+++.+++||.++.+|+.|+||.+|++.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (73)
T 2dbm_A            7 GPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEILVAL   65 (73)
T ss_dssp             CCEEEESSCBCCCSTTCCCBCTTCEEECCBCSSSSEEEEEETTEEEEEESSSEEESSCC
T ss_pred             CCEEEEccccCCCCCCCccCCCCCEEEEEEecCCCEEEEEECCCEEEechHHEEEccCC
Confidence            45699999999999999999999999999988889999999999999999999987653

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A

Probab=99.64  E-value=6.5e-16  Score=90.47  Aligned_cols=55  Identities=24%  Similarity=0.481  Sum_probs=50.6

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECC-----eEEEEcCCcEEec
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG-----RVGYFPSNYVIKV   78 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g-----~~G~~P~~~v~~~   78 (139)
                      ..++|+|+|.++.+++|+|++||+|.|+++.+++||.|++.+     +.|+||++||+.+
T Consensus         8 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~~~~G~fP~~yv~~~   67 (68)
T 1tg0_A            8 FKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAVQ   67 (68)
T ss_dssp             EEEEESSCBCCSCTTBCCBCTTCEEEEEEECSSSEEEEEEECTTSCEEEEEEEGGGEEEC
T ss_pred             EEEEECeeECcCCcCCCCCCCCCEEEEEEecCCCeEEEEECCCCCCCEEEEEchHHEEEC
Confidence            469999999999999999999999999998889999999844     8999999999864

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}

Probab=99.64  E-value=1.4e-16  Score=92.56  Aligned_cols=58  Identities=29%  Similarity=0.685  Sum_probs=53.3

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      ..++|+|+|.++.++||+|++||+|.|+++.+++||.|+.+|+.|+||++|++.+...
T Consensus         2 ~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~   59 (65)
T 2fei_A            2 RQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELELE   59 (65)
T ss_dssp             CEEECSSCCCCCSTTBCCCCTTCEEECCCCSSSSEEEEESSSCEEEEETTTSCBCCCC
T ss_pred             eEEEECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEEECCcEEEecHHHEEEcCCC
Confidence            3589999999999999999999999999988899999999999999999999876543

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1

Probab=99.64  E-value=1e-15  Score=93.07  Aligned_cols=59  Identities=27%  Similarity=0.725  Sum_probs=54.5

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      ...++|+|+|.++.++||+|++||+|.|++..+++||.|..+|+.|+||++|++.+...
T Consensus        17 ~~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   75 (83)
T 1neg_A           17 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLAAA   75 (83)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECCTT
T ss_pred             ceEEEEccccCCCCCCccccCCCCEEEEEEecCCCEEEEEECCeEEEEEHHHEEECCCC
Confidence            44699999999999999999999999999998889999988999999999999987654

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A

Probab=99.64  E-value=1.3e-15  Score=89.87  Aligned_cols=59  Identities=37%  Similarity=0.762  Sum_probs=53.5

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEEC--CCCCeeEEEE-CCeEEEEcCCcEEecCCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDT--SDQNWWKGKC-MGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~--~~~~w~~~~~-~g~~G~~P~~~v~~~~~~   81 (139)
                      ...++|+|+|.++.+++|+|++||+|.|+++  .+++||.++. +|+.|+||++|++.+...
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~   67 (71)
T 1u5s_A            6 LHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDG   67 (71)
T ss_dssp             SSEEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEETTTEEEEEETTSEEECCCS
T ss_pred             cEEEEEcccCCCCCCCcccCCCCCEEEEEECCCCCCCCEEEEeCCCCEEEEeHHHEEECCCC
Confidence            3569999999999999999999999999998  6789999985 899999999999987654

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A

Probab=99.64  E-value=1.3e-15  Score=89.12  Aligned_cols=58  Identities=33%  Similarity=0.596  Sum_probs=53.9

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   80 (139)
                      ...++|+|+|.++.+++|+|++||+|.|+++.+++||+++.+|+.|+||.+|++.+..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 2dl3_A            7 GRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELLSG   64 (68)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSTTEEEEECSSCEEEEETTTEEECCS
T ss_pred             CcEEEECccCCCCCcCCccCCCCCEEEEeEecCCCEEEEEECCCEEEEchHHEEECCC
Confidence            4569999999999999999999999999998888999999999999999999998754

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=99.64  E-value=6.9e-16  Score=91.39  Aligned_cols=56  Identities=39%  Similarity=0.807  Sum_probs=51.6

Q ss_pred             CccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEe
Q psy6450          22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIK   77 (139)
Q Consensus        22 ~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~   77 (139)
                      ....++|+|+|.++.+++|+|++||+|.|++..+++||+|+..++.|+||++||++
T Consensus        16 ~~~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~fP~~yV~~   71 (72)
T 2l0a_A           16 EARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFVTA   71 (72)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEECSSCEEECTTCCEEE
T ss_pred             CCeEEEECCccCCCCCCccCCCCCCEEEEEEecCCCEEEEEECCCEEEechhhCcc
Confidence            34569999999999999999999999999998888999999988999999999974

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A

Probab=99.64  E-value=5.2e-16  Score=87.78  Aligned_cols=55  Identities=25%  Similarity=0.628  Sum_probs=50.3

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEec
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIKV   78 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~   78 (139)
                      ..++|+|+|.++.+++|+|++||+|.|++..+++||.+++ +|+.|+||++|++.+
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   57 (57)
T 1cka_A            2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY   57 (57)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEC-
T ss_pred             cEEEECCcCCCCCCCCCCCCCCCEEEEEEecCCCcEEEEeCCCCEEEEeHHHEEEC
Confidence            3589999999999999999999999999998899999995 899999999999753

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=1e-15  Score=92.64  Aligned_cols=60  Identities=23%  Similarity=0.482  Sum_probs=55.1

Q ss_pred             CccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        22 ~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      ...+++|+|+|.++.+++|+|++||+|.|+++.+++||+++..|+.|+||.+||+.+...
T Consensus         9 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   68 (81)
T 2ysq_A            9 SIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQ   68 (81)
T ss_dssp             CCEEEEESSCCCCSSSSSCCCCTTCEEEEEECCSSSEEEEECSSCEEEEEGGGEEESSCC
T ss_pred             CceEEEEeeeECCCCCCcCCCCCCCEEEEEEEcCcCEEEEEECCCEEEechHHEEEcCCc
Confidence            345699999999999999999999999999998899999999999999999999987654

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}

Probab=99.64  E-value=8.3e-16  Score=90.24  Aligned_cols=59  Identities=29%  Similarity=0.651  Sum_probs=54.3

Q ss_pred             CccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCC
Q psy6450          22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        22 ~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   80 (139)
                      +...++|+|+|.++.+++|+|++||+|.|+++.+++||+++..|+.|+||.+|++.+..
T Consensus         7 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   65 (69)
T 2dil_A            7 GAQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKLSG   65 (69)
T ss_dssp             CCCEEECCSCBCCSSSSSCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGCCBCCC
T ss_pred             CCcEEEECccCCccCcCccCCCCCCEEEEEECCCCCEEEEEECCCEEEEehHHeEEcCC
Confidence            34569999999999999999999999999999888999999999999999999987654

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=1.7e-15  Score=91.43  Aligned_cols=59  Identities=17%  Similarity=0.469  Sum_probs=54.5

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      ...++|+|+|.++.+++|+|++||+|.|+++.+++||+++..|+.||||++||+.+...
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   66 (80)
T 2ekh_A            8 ATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDENE   66 (80)
T ss_dssp             CEEEEECSCBCCSSTTSCCBCTTCEEEEEEECTTSEEEEEETTEEEEEETTTEECCCCC
T ss_pred             CCEEEECCCCCCCCCCccCcCCCCEEEEEEeCCCCeEEEEECCCEEEEEhHHeEECCCC
Confidence            34699999999999999999999999999998889999999999999999999987654

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A

Probab=99.64  E-value=6.6e-16  Score=92.37  Aligned_cols=59  Identities=29%  Similarity=0.595  Sum_probs=53.6

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECC---eEEEEcCCcEEecCCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMG---RVGYFPSNYVIKVQPG   81 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g---~~G~~P~~~v~~~~~~   81 (139)
                      ...++|+|+|.++.++||+|++||+|.|+++.+++||++++.+   +.|+||++||+.+...
T Consensus        10 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~G~~P~~yv~~~~~~   71 (76)
T 2ed1_A           10 VRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHILSDS   71 (76)
T ss_dssp             CEEEEESSCCCCSSSSBCCCCSSCEEEESSCCSSSEEEEEETTCTTCEEEEEGGGEEECCCC
T ss_pred             CeEEEECccCCCCCcCCcCcCCCCEEEEEEecCCCEEEEEECCCCCCEEEEehHHeEECCCC
Confidence            4569999999999999999999999999998889999999855   8999999999987654

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=1.2e-15  Score=89.37  Aligned_cols=58  Identities=43%  Similarity=0.820  Sum_probs=53.6

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   80 (139)
                      ...++|+|+|.++.+++|+|++||+|.|++..+++||+++.+|+.|+||++|++.+..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 1x2k_A            7 GKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQSG   64 (68)
T ss_dssp             SEEEEESSCCCCCSTTBCCCCSSCEEEEEECSCSSEEEEESSSCEEEEETTTEEECCC
T ss_pred             cEEEEECceECCCCCCcccCCCCCEEEEEEcCCCCEEEEEECCcEEEEehHHeEEcCC
Confidence            3469999999999999999999999999999888999999999999999999998753

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=2e-15  Score=90.90  Aligned_cols=58  Identities=40%  Similarity=0.825  Sum_probs=53.8

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      ..++|+|+|.++.+++|+|++||+|.|+++.+.+||+++.+|+.|+||.+||+.+...
T Consensus        18 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   75 (79)
T 1x69_A           18 ITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQSG   75 (79)
T ss_dssp             CCEEESSCCCCSSSSBCCCCTTCEEEEEEECSSSEEEEEETTEEEEEETTSEEECCCC
T ss_pred             eEEEECccCCCCCCCCcCcCCCCEEEEeEecCCCeEEEEECCcEEEechHHEEECCCC
Confidence            3599999999999999999999999999988889999999999999999999987653

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}

Probab=99.63  E-value=8.8e-16  Score=90.13  Aligned_cols=57  Identities=28%  Similarity=0.479  Sum_probs=52.7

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECC---CCCeeEEEECCeEEEEcCCcEEecCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTS---DQNWWKGKCMGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~---~~~w~~~~~~g~~G~~P~~~v~~~~~   80 (139)
                      ..++|+|+|.++.++||+|++||+|.|++..   +++||.|+.+|+.|+||++|++.+..
T Consensus         4 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   63 (69)
T 1wyx_A            4 VLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILVG   63 (69)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEETTGGGCTTEEEEEETTEEEEEEGGGEEEEEE
T ss_pred             EEEEECccCCcCCCCccCCcCCCEEEEeECCCCCCCCcEEEEECCcEEEechhhEEECCC
Confidence            3589999999999999999999999999987   68999999999999999999987653

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=1.1e-15  Score=91.47  Aligned_cols=59  Identities=24%  Similarity=0.541  Sum_probs=54.3

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE   82 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~   82 (139)
                      ..++|+|+|.++.+++|+|++||+|.|++..+++||+++++|+.|+||.+||+.+....
T Consensus        11 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   69 (76)
T 2epd_A           11 VEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLPAGTE   69 (76)
T ss_dssp             EEEEESSCEECSSTTBCEECTTCEEEEEEEEETTEEEEEETTEEEEEESSSEECCSSCS
T ss_pred             EEEEECcCCCCCCCCccCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHEEEcCCCC
Confidence            45999999999999999999999999999878899999999999999999999876543

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=2e-15  Score=92.76  Aligned_cols=59  Identities=37%  Similarity=0.686  Sum_probs=54.3

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      ...++|+|+|.++.++||+|++||+|.|+++.+++||++++.++.|+||.+||+.+...
T Consensus        17 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   75 (88)
T 1x2q_A           17 ARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTNLNI   75 (88)
T ss_dssp             CEEEEESSCCCCCSSSCCCCCSSCEEEEEECSCSSSEEEEETTEEEEECGGGEESCSSC
T ss_pred             CeEEEEcccCCCCCcCccCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHEEEcCCc
Confidence            45699999999999999999999999999988899999999999999999999976643

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}

Probab=99.63  E-value=5.3e-16  Score=90.65  Aligned_cols=56  Identities=25%  Similarity=0.379  Sum_probs=52.0

Q ss_pred             EEEEEeeecCC--CCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCC
Q psy6450          25 LFVVLYNFKSR--HADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        25 ~~~al~~~~~~--~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   80 (139)
                      .++|+|+|.++  .+++|+|++||+|.|+++.+++||.|+.+|+.|+||++||+.+..
T Consensus         8 ~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~   65 (67)
T 2eyx_A            8 YARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQ   65 (67)
T ss_dssp             BEEECCCBCCCTTCSSBCCBCSSEEEEEEEECTTSEEEEEETTEEEEEEGGGBCCBCS
T ss_pred             EEEEeEEECCCCCCCCccccCCCCEEEEEEecCCCEEEEEECCCEEEEehHhEEEcCC
Confidence            48999999999  889999999999999999889999999999999999999987653

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}

Probab=99.63  E-value=5.1e-16  Score=88.76  Aligned_cols=53  Identities=25%  Similarity=0.688  Sum_probs=50.2

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEE
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVI   76 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~   76 (139)
                      ..++|+|+|.++.+++|+|++||+|.|+++.+++||.++.+|+.|+||++|++
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~   59 (60)
T 2gnc_A            7 EFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIV   59 (60)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEETTEEEEEEGGGEE
T ss_pred             EEEEECCCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCeEEEEeHhhEE
Confidence            45999999999999999999999999999877899999999999999999986

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1

Probab=99.63  E-value=1.1e-15  Score=87.99  Aligned_cols=54  Identities=41%  Similarity=0.791  Sum_probs=51.0

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEe
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIK   77 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~   77 (139)
                      ..++|+|+|.++.+++|+|++||+|.|++..+++||.+++.++.|+||++|++.
T Consensus         6 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   59 (62)
T 1uj0_A            6 RRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTT   59 (62)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEES
T ss_pred             eEEEECccCCCCCcCCcCCCCCCEEEEEEeCCCCEEEEEECCCEEEechhHEEE
Confidence            459999999999999999999999999999889999999999999999999974

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A

Probab=99.63  E-value=7.1e-16  Score=89.36  Aligned_cols=57  Identities=30%  Similarity=0.716  Sum_probs=52.6

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQ   79 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   79 (139)
                      ..+++|+|+|.++.+++|+|++||+|.|+++.+++||.++.+|+.|+||++|++.+.
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   63 (65)
T 3u23_A            7 KRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELE   63 (65)
T ss_dssp             -CEEEECSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEETTEEEEEEGGGEEECC
T ss_pred             CeEEEEeeeeCCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCCEEEeehHHEEECc
Confidence            346999999999999999999999999999888899999999999999999998864

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1

Probab=99.63  E-value=1.4e-15  Score=90.10  Aligned_cols=58  Identities=29%  Similarity=0.785  Sum_probs=53.8

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      ..++|+|+|.++.+++|+|++||+|.|++..+++||.++.+|+.|+||.+|++.+...
T Consensus         6 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   63 (73)
T 3thk_A            6 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPA   63 (73)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECCC-
T ss_pred             EEEEECcCCCcCCCCccCCCCCCEEEEEECCCCCeEEEEECCcEEEEehHHeEECCCC
Confidence            4699999999999999999999999999998899999999999999999999987654

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A

Probab=99.63  E-value=1.4e-15  Score=86.86  Aligned_cols=55  Identities=31%  Similarity=0.688  Sum_probs=50.8

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEEC-CCCCeeEEEE--CCeEEEEcCCcEEec
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDT-SDQNWWKGKC--MGRVGYFPSNYVIKV   78 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~-~~~~w~~~~~--~g~~G~~P~~~v~~~   78 (139)
                      ..++|+|+|.++.+++|+|++||+|.|++. .+++||.++.  +|+.|+||++|++.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~l   60 (60)
T 2v1q_A            3 ERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV   60 (60)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             cEEEEeeeECCCCCCCccCCCCCEEEEEeCCCCCCCEEEEECCCCCEEEEEHHHEEEC
Confidence            468999999999999999999999999998 4789999999  899999999999853

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}

Probab=99.63  E-value=1.6e-15  Score=89.43  Aligned_cols=59  Identities=29%  Similarity=0.640  Sum_probs=54.0

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECC-CCCeeEEEE--CCeEEEEcCCcEEecCCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTS-DQNWWKGKC--MGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~-~~~w~~~~~--~g~~G~~P~~~v~~~~~~   81 (139)
                      ...++|+|+|.++.+++|+|++||+|.|++.. +++||.|++  +|+.|+||.+|++.+...
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   67 (71)
T 2jt4_A            6 KKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVRDK   67 (71)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEETTTS
T ss_pred             CCEEEEcccCCCCCCCcccCCCCCEEEEEECCCCCCCEEEEECCCCCeEEechHHeEECCCc
Confidence            35699999999999999999999999999986 789999999  899999999999987653

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.63  E-value=2e-15  Score=90.66  Aligned_cols=60  Identities=25%  Similarity=0.510  Sum_probs=55.0

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE   82 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~   82 (139)
                      ...++|+|+|.++.+++|+|++||+|.|++..+.+||.++.+|+.|+||.+||+.+....
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   66 (78)
T 2yuo_A            7 GRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDERS   66 (78)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEECCCC
T ss_pred             ceEEEECccCCCCCCCCccCCCCCEEEEEEecCCCEEEEEECCCEEEEehHHEEECCCcC
Confidence            356999999999999999999999999999888999999999999999999999876543

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.63  E-value=2.7e-15  Score=90.76  Aligned_cols=60  Identities=25%  Similarity=0.452  Sum_probs=54.1

Q ss_pred             CccEEEEEeeecCCCCCCcccCCCCEEEEEEC--CCCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDT--SDQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        22 ~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~--~~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      +...++|+|+|.++.++||+|++||+|.|++.  .+.+||.++.+|+.|+||.+||+.+...
T Consensus        16 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   77 (81)
T 1x43_A           16 NNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLELLNSG   77 (81)
T ss_dssp             CCEEEEESSCCCCSSTTBCCCCTTCEEEEECCTTCCTTEEEEEETTEEEEEEGGGEEECCCC
T ss_pred             CCeEEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCCCcEEEEECCCEEEEehHHEEECCCC
Confidence            34569999999999999999999999999998  3589999999999999999999987643

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*

Probab=99.63  E-value=9.6e-16  Score=88.13  Aligned_cols=55  Identities=29%  Similarity=0.562  Sum_probs=51.1

Q ss_pred             EEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEecC
Q psy6450          25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIKVQ   79 (139)
Q Consensus        25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~   79 (139)
                      .++|+|+|.++.++||+|++||+|.|++..+++||.+++  +|+.|+||++|++.+.
T Consensus         5 ~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~fP~~yv~~~~   61 (62)
T 2fpe_A            5 THRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVT   61 (62)
T ss_dssp             CEEECSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             EEEECccCCccCcCcCcCCCCCEEEEEEecCCCEEEEEECCCCCEEEechHHEEECc
Confidence            489999999999999999999999999988899999995  7899999999998763

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}

Probab=99.62  E-value=1.1e-15  Score=89.60  Aligned_cols=57  Identities=32%  Similarity=0.699  Sum_probs=52.9

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEecC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIKVQ   79 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~   79 (139)
                      ...++|+|+|.++.+++|+|++||+|.|+++.+++||.++. +|+.|+||++|+++..
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   63 (69)
T 4esr_A            6 APTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVASET   63 (69)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEEETTEEEEEEGGGEEEHH
T ss_pred             cCEEEECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEeCCCCEEEEchHHeEECc
Confidence            45699999999999999999999999999988889999999 9999999999998754

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.62  E-value=1.3e-15  Score=89.59  Aligned_cols=58  Identities=34%  Similarity=0.739  Sum_probs=53.3

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECC--CCCeeEEEECCeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTS--DQNWWKGKCMGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~~~   80 (139)
                      ...++|+|+|.++.++||+|++||+|.|+++.  +++||+++.+|+.|+||.+||+.+..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   66 (70)
T 2da9_A            7 GDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLSG   66 (70)
T ss_dssp             SEEEEECSCCCCSSTTBCCCCTTEEEEEEECCCSSTTEEEEECSSCEEEEEGGGEEECCC
T ss_pred             CcEEEECcCCCCCCcCEeeEcCCCEEEEEECCCCCCCeEEEEECCcEEEechHHeEECCC
Confidence            35699999999999999999999999999985  78999999999999999999998764

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A

Probab=99.62  E-value=1.4e-15  Score=88.29  Aligned_cols=56  Identities=14%  Similarity=0.223  Sum_probs=51.5

Q ss_pred             cEEEEEeeecC-CCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEecC
Q psy6450          24 NLFVVLYNFKS-RHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIKVQ   79 (139)
Q Consensus        24 ~~~~al~~~~~-~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~   79 (139)
                      ..++|+|+|.+ +.++||+|++||+|.|++..+++||.+++  +|+.|+||++|++.+.
T Consensus         6 ~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~~   64 (65)
T 2j05_A            6 RRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVG   64 (65)
T ss_dssp             CEEEESSCBCCCTTSSBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             cEEEEccccCCCCCCCcCcCCCCCEEEEeEecCCCEEEEEECCCCCEEEEEhHHeEECc
Confidence            45999999999 99999999999999999988889999995  7899999999998764

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}

Probab=99.62  E-value=3e-16  Score=94.51  Aligned_cols=58  Identities=22%  Similarity=0.468  Sum_probs=53.9

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      ..++|+|+|.++.++||+|++||+|.|++..+++||.|+.+|+.|+||++||+.+...
T Consensus        19 ~~~~Alydy~a~~~~eLsf~~Gd~I~Vl~~~~~gWw~g~~~g~~G~fP~nyV~~~~~~   76 (79)
T 1z9q_A           19 PRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDF   76 (79)
T ss_dssp             CCEEESSCCCCSSTTBCCCCTTCCBCCCEESSSSEEEEEETTEEEEEEGGGEEESSCC
T ss_pred             eEEEEcCccCCCCCCcccccCCCEEEEeEecCCCEEEEEECCeEEEecHHHEEECCCC
Confidence            4599999999999999999999999999988899999999999999999999987653

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.62  E-value=9.9e-16  Score=90.40  Aligned_cols=57  Identities=35%  Similarity=0.645  Sum_probs=50.7

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEE-CCCCCeeEEEE-CCeEEEEcCCcEEecC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVID-TSDQNWWKGKC-MGRVGYFPSNYVIKVQ   79 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~-~~~~~w~~~~~-~g~~G~~P~~~v~~~~   79 (139)
                      ...++|+|+|.++.+++|+|++||+|.|++ ..+++||.|++ +|+.|+||++|++...
T Consensus        11 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   69 (71)
T 1csk_A           11 GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKRE   69 (71)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEECTTSCEEEEETTSEEC--
T ss_pred             CCEEEEceeECcCCCCcCCCCCCCEEEEeECCCCCCCEEEEeCCCCEEEEehHHeEEcc
Confidence            346999999999999999999999999999 67789999995 8999999999998643

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=1e-15  Score=90.32  Aligned_cols=60  Identities=25%  Similarity=0.591  Sum_probs=54.9

Q ss_pred             CccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        22 ~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      +...++|+|+|.++.+++|+|++||+|.|++..+++||.+++.|+.|+||.+|++.+...
T Consensus         7 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   66 (71)
T 2dnu_A            7 GEEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKAKDS   66 (71)
T ss_dssp             CSEEEECSSCBCCSSTTBCCBCTTCEEEECCCCSSSEEEEEETTEEEEEEGGGCEECCCC
T ss_pred             CCCEEEECCccCCCCCCCCcCCCCCEEEEeECCCCCeEEEEECCcEEEEEHHHeEEccCC
Confidence            345699999999999999999999999999988899999999999999999999987654

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=2e-15  Score=90.96  Aligned_cols=59  Identities=29%  Similarity=0.570  Sum_probs=52.3

Q ss_pred             CCccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEecCC
Q psy6450          21 LPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        21 ~~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~   80 (139)
                      .....++|+|+|.++.++||+|++||+|.|++. +.+||++++  +|+.|+||++||+.+..
T Consensus        15 ~~~~~~~Alydy~a~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~~g~~G~~P~~yv~~~~~   75 (79)
T 2cud_A           15 LDSDFLAVLSDYPSPDISPPIFRRGEKLRVISD-EGGWWKAISLSTGRESYIPGICVARVSG   75 (79)
T ss_dssp             SCCCEEEESSCSSCTTTSCCSSCTTCEEEEEEE-ETTEEEEEETTTCCEEEEEGGGEEEECC
T ss_pred             CCCeEEEEccCCCCCCCCcCCCCCCCEEEEEec-CCCeEEEEECCCCCEEEeeHHHeEEccC
Confidence            344579999999999999999999999999984 679999998  58999999999988653

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=1.1e-15  Score=90.08  Aligned_cols=58  Identities=28%  Similarity=0.470  Sum_probs=53.5

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECC---CCCeeEEEECCeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTS---DQNWWKGKCMGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~---~~~w~~~~~~g~~G~~P~~~v~~~~~   80 (139)
                      ...++|+|+|.++.+++|+|++||+|.|+++.   +++||.++.+|+.|+||++||+.+..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   67 (71)
T 2cre_A            7 GLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQILSG   67 (71)
T ss_dssp             CEEEEESSCCCCSSSSBCCCCSSCCEEEEESCCTTSTTEEEEESSSCCEEEETTTEEECCC
T ss_pred             cEEEEECcccCcCCCCCCCCCCCCEEEEeEcCCCCCCCcEEEEECCCEEEEehHHEEECCC
Confidence            34699999999999999999999999999986   78999999999999999999998764

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=8.8e-16  Score=94.70  Aligned_cols=61  Identities=31%  Similarity=0.599  Sum_probs=54.8

Q ss_pred             CCccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEEC--CeEEEEcCCcEEecCCC
Q psy6450          21 LPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        21 ~~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~--g~~G~~P~~~v~~~~~~   81 (139)
                      .....++|+|+|.++.++||+|++||+|.|+++.+++||++++.  |+.|+||.+||+.+...
T Consensus        15 ~~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~~~~   77 (90)
T 2yup_A           15 LEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVSREP   77 (90)
T ss_dssp             GGSEEEEECSCCCCCSSSBCCCCTTCEEEESSCCCSSEEEEECTTTCCEEEEEGGGEEEEECC
T ss_pred             ccceEEEEeecCCcCCcCcCCCCCCCEEEEEEEcCCCeEEEEECCCCCEEEEehHHeEEcCCC
Confidence            34456999999999999999999999999999888999999995  89999999999987653

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A

Probab=99.62  E-value=1.5e-15  Score=87.33  Aligned_cols=56  Identities=29%  Similarity=0.742  Sum_probs=50.5

Q ss_pred             CccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEec
Q psy6450          22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIKV   78 (139)
Q Consensus        22 ~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~   78 (139)
                      +...++|+|+|.++.+++|+|++||+|.|++.. ++||++++  +|+.|+||++|++.+
T Consensus         5 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~~   62 (62)
T 2iim_A            5 QDNLVIALHSYEPSHDGDLGFEKGEQLRILEQS-GEWWKAQSLTTGQEGFIPFNFVAKA   62 (62)
T ss_dssp             TTCEEEESSCBCCCSTTBCCBCTTCEEEEEECC-SSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CCcEEEEcccCCCCCCCCcCCCCCCEEEEEEcC-CCEEEEEECCCCCEEEEEHHHEEEC
Confidence            345799999999999999999999999999985 59999996  889999999999863

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A

Probab=99.62  E-value=1.1e-15  Score=88.59  Aligned_cols=55  Identities=29%  Similarity=0.773  Sum_probs=50.9

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEEC--------CeEEEEcCCcEEec
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--------GRVGYFPSNYVIKV   78 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~--------g~~G~~P~~~v~~~   78 (139)
                      .+++|+|+|.++.+++|+|++||+|.|+++.+++||.++..        |+.|+||++|++.+
T Consensus         2 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~g~~~g~~G~~P~~yv~~l   64 (65)
T 2oaw_A            2 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKL   64 (65)
T ss_dssp             EEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEEEEEETTEEEEEEEEEEGGGEEEC
T ss_pred             cEEEEcccCCccCCCCCCCCCCCEEEEEEcCCCCEEEEEEccccCCCcCCcEEEEchHHeEEc
Confidence            35899999999999999999999999999988999999985        88999999999865

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A

Probab=99.62  E-value=1.2e-15  Score=89.09  Aligned_cols=57  Identities=28%  Similarity=0.672  Sum_probs=50.3

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEecCCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~~   81 (139)
                      ..++|+|+|.++.++||+|++||+|.|+++. ++||.+++ +|+.|+||++|++.+.+.
T Consensus         5 ~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~-~~Ww~~~~~~g~~G~~Psnyv~~~~~~   62 (67)
T 2b86_A            5 VIVIAKWDYTAQQDQELDIKKNERLWLLDDS-KTWWRVRNAANRTGYVPSNYVERKLEH   62 (67)
T ss_dssp             EEEEESSCBCCSSTTSCCBCTTCEEEEEECS-SSSCEEECTTSCEEECCCCSEEEC---
T ss_pred             eEEEEeeeECCCCCCccccCCCCEEEEEecC-CCeEEEEeCCCCEEEeChHHEeEcCCC
Confidence            4699999999999999999999999999984 79999996 899999999999887653

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A

Probab=99.62  E-value=2.7e-15  Score=86.38  Aligned_cols=56  Identities=30%  Similarity=0.638  Sum_probs=50.8

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEEC-CCCCeeEEEECCeEEEEcCCcEEecC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDT-SDQNWWKGKCMGRVGYFPSNYVIKVQ   79 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~-~~~~w~~~~~~g~~G~~P~~~v~~~~   79 (139)
                      ..++|+|+|.++.+++|+|++||+|.|+++ .+.+||.++..|+.|+||++|++.+.
T Consensus         6 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~~~g~~G~~P~~yv~~~~   62 (63)
T 3eg3_A            6 NLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPVN   62 (63)
T ss_dssp             TEEEESSCBCCCSSSBCCBCTTCEEEEEEECTTSSEEEEEETTEEEEEEGGGEEESC
T ss_pred             EEEEEcceECCCCCCccCCCCCCEEEEEEeCCCCCeEEEEECCCeEEEehHHeEECC
Confidence            469999999999999999999999999984 45679999999999999999998764

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=1.9e-15  Score=90.17  Aligned_cols=58  Identities=19%  Similarity=0.393  Sum_probs=52.4

Q ss_pred             ccEEEEEeeecCCC-------CCCcccCCCCEEEEEE-CCCCCeeEEEECCeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRH-------ADELDLKPGYKVTVID-TSDQNWWKGKCMGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~-------~~eLs~~~gd~i~v~~-~~~~~w~~~~~~g~~G~~P~~~v~~~~~   80 (139)
                      ...++|+|+|.++.       +++|+|++||+|.|+. ..+++||+++.+|+.|+||++||+.+..
T Consensus         7 ~~~~~Alydy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~   72 (75)
T 2ege_A            7 GKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDHMSL   72 (75)
T ss_dssp             SEEEEESSCBCTTTTCCCSSSCCBCCBCTTCEEEEESCCCTTCEEEEESSSCEEEEETTTEEECCC
T ss_pred             CcEEEECCCCCCCccccCCCCCCcceECCCCEEEEeEccCCCCEEEEEECCcEEEEChHHeEEccC
Confidence            34699999999999       9999999999999997 4678999999999999999999998643

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A

Probab=99.61  E-value=2.5e-15  Score=88.20  Aligned_cols=58  Identities=26%  Similarity=0.454  Sum_probs=52.8

Q ss_pred             cEEEEEeeec-CCCCCCcccCCCCEEEEEECCCCCeeEEEEC--CeEEEEcCCcEEecCCC
Q psy6450          24 NLFVVLYNFK-SRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        24 ~~~~al~~~~-~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~--g~~G~~P~~~v~~~~~~   81 (139)
                      ..++|+|+|. ++.+++|+|++||+|.|++..+++||.+++.  |+.|+||++|++.+...
T Consensus         3 ~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~~~~   63 (69)
T 1ruw_A            3 PKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDT   63 (69)
T ss_dssp             SEEEESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEETTSSCEEEEEGGGEEECCSC
T ss_pred             cEEEEccccCCCCCCCcccCCCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEEcCCc
Confidence            4589999996 9999999999999999999888899999995  99999999999987653

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}

Probab=99.61  E-value=2e-15  Score=92.39  Aligned_cols=53  Identities=28%  Similarity=0.744  Sum_probs=49.0

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEe
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIK   77 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~   77 (139)
                      ..++|+|+|.++.++||+|++||+|.|++. +++||.|++ +|+.|+||++||+.
T Consensus        32 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~   85 (86)
T 2jxb_A           32 VIVIAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNAANRTGYVPSNYVER   85 (86)
T ss_dssp             EEEEESSCCCCCSSSBCCCCTTEEEEEEEC-CSSEEEEECTTSCEEEEEGGGBCC
T ss_pred             eEEEECccCCCCCCCEeccCCCCEEEEEec-CCCeEEEEECCCCEEEeehHHEEe
Confidence            569999999999999999999999999998 679999996 89999999999863

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}

Probab=99.61  E-value=1.2e-15  Score=85.39  Aligned_cols=52  Identities=33%  Similarity=0.735  Sum_probs=48.6

Q ss_pred             EEEEEeeecCCCCCCcccCCCCEEEEEECCC-CCeeEEEECCeEEEEcCCcEE
Q psy6450          25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSD-QNWWKGKCMGRVGYFPSNYVI   76 (139)
Q Consensus        25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~-~~w~~~~~~g~~G~~P~~~v~   76 (139)
                      .++|+|+|.++.+++|+|++||+|.|+++.+ ++||.++++|+.|+||++||+
T Consensus         2 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~g~~G~~P~~yv~   54 (54)
T 2a28_A            2 AMEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK   54 (54)
T ss_dssp             EEEBCSCBCCCSTTBCCBCTTCEEEEEECCCSSSEEEEEETTEEEEEEGGGBC
T ss_pred             EEEECccCCcCCCCCccCCCCCEEEEEEecCCCCEEEEEECCeEEEeeHHHcC
Confidence            4899999999999999999999999999885 799999999999999999974

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A

Probab=99.61  E-value=2.3e-15  Score=88.15  Aligned_cols=57  Identities=30%  Similarity=0.617  Sum_probs=52.1

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~   80 (139)
                      ...++|+|+|.++.++||+|++||+|.|+++. ++||.++. +|+.|+||++|++.+..
T Consensus         8 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~~g~~G~~P~~yv~~~~~   65 (68)
T 2k2m_A            8 LKWVLCNYDFQARNSSELSVKQRDVLEVLDDS-RKWWKVRDPAGQEGYVPYNILTPYPA   65 (68)
T ss_dssp             CCEEEESSCBCCCSSSBCCBCTTCEEEEEECS-SSEEEEECTTSCCEEEEGGGEEECCS
T ss_pred             CEEEEECccCCCCCCCcccCCCCCEEEEEEcC-CCeEEEEeCCCCEEEEEhhhEEEcCC
Confidence            45699999999999999999999999999986 89999987 79999999999998754

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}

Probab=99.61  E-value=7.9e-15  Score=93.36  Aligned_cols=59  Identities=32%  Similarity=0.902  Sum_probs=54.1

Q ss_pred             CccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEecCC
Q psy6450          22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        22 ~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~   80 (139)
                      ....++|+|+|.++.+++|+|++||+|.|+++.+++||++++  +|+.|+||++||+.+..
T Consensus        26 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   86 (109)
T 2yt6_A           26 GVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPADS   86 (109)
T ss_dssp             SCCEEEESSCCCCSSTTSCCCCTTCEEEEEECSCTTCEEEEESSSCCEEEECTTTEEESSS
T ss_pred             CCEEEEECccCCCCCCCccCCCCCCEEEEEEccCCCcEEEEECCCCCEEEechHHcEECCc
Confidence            345699999999999999999999999999988899999997  88999999999998754

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A

Probab=99.61  E-value=1.4e-15  Score=87.89  Aligned_cols=55  Identities=25%  Similarity=0.645  Sum_probs=51.1

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEec
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIKV   78 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~   78 (139)
                      ..++|+|+|.++.+++|+|++||+|.+++..+++||.++.  +|+.|+||++|++.+
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~   63 (64)
T 4f14_A            7 RTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFV   63 (64)
T ss_dssp             -CEEESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EEEEECeeeCCcCCCcCCCCCCCEEEEEEeCCCCeEEEEECCCCCEEEEeHHHeEEC
Confidence            3489999999999999999999999999988889999999  899999999999875

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=3e-15  Score=90.12  Aligned_cols=59  Identities=34%  Similarity=0.726  Sum_probs=54.6

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      ...++|+|+|.++.+++|+|++||+|.|+++.+++||+++.+|+.|+||.+||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (79)
T 2yun_A            7 GRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEELPSN   65 (79)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSCEEEESSSCEEEECSTTEEEESSC
T ss_pred             CCEEEECccCCcCCCCCcCCCCCCEEEEEEcCCCCEEEEEECCCEEEEEhHHeEECCCC
Confidence            45699999999999999999999999999998889999999999999999999987654

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=7.7e-16  Score=90.62  Aligned_cols=58  Identities=29%  Similarity=0.633  Sum_probs=53.7

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      ..++|+|+|.++.+++|+|++||+|.|+++.+++||.++..|+.|+||++|++.+...
T Consensus         9 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   66 (70)
T 2ega_A            9 EQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQNSG   66 (70)
T ss_dssp             BCEECCSCCCCCSSSSCCCCTTCBCEEEEECTTSEEEEECSSCEEEEEGGGCEESCCC
T ss_pred             cEEEECceECCCCCCcccCCCCCEEEEEEccCCCeEEEEECCCEEEEehHHcEECCCC
Confidence            4499999999999999999999999999998899999999999999999999987643

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}

Probab=99.61  E-value=9.6e-16  Score=89.69  Aligned_cols=58  Identities=22%  Similarity=0.526  Sum_probs=52.9

Q ss_pred             CccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEecC
Q psy6450          22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIKVQ   79 (139)
Q Consensus        22 ~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~   79 (139)
                      +...++|+|+|.++.+++|+|++||+|.|++..+++||.+++ +|+.|+||++|++.+.
T Consensus         9 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   67 (68)
T 1s1n_A            9 TGEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEPYS   67 (68)
T ss_dssp             CCEEEEECSCBCCSSSSCCCBCSSEEEEECSCCSSSEEEEECSSSCEEEEESTTEEECC
T ss_pred             CCCEEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEehHHeEECc
Confidence            345699999999999999999999999999988889999995 8999999999998764

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=5.9e-15  Score=89.26  Aligned_cols=59  Identities=17%  Similarity=0.392  Sum_probs=52.5

Q ss_pred             CCccEEEEEeeecCCCCCCcccCCCCEEEEEECCCC-CeeEEEE--CCeEEEEcCCcEEecC
Q psy6450          21 LPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQ-NWWKGKC--MGRVGYFPSNYVIKVQ   79 (139)
Q Consensus        21 ~~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~-~w~~~~~--~g~~G~~P~~~v~~~~   79 (139)
                      .+...++|+|+|.++.++||+|++||+|.|++..++ +||.+++  +|+.|+||.+||+...
T Consensus        15 ~~~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   76 (81)
T 1x6g_A           15 APGTQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRERS   76 (81)
T ss_dssp             CTTCEEEESSCBSSCCTTCCCBCTTCEEEEEECCCSSSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             CCCCEEEECCCCCcCCCCCCCCCCCCEEEEEeccCCCCeEEEEeCCCCCEEEEehHHEEEcc
Confidence            344569999999999999999999999999998766 9999997  6899999999998754

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=2.6e-15  Score=91.62  Aligned_cols=57  Identities=26%  Similarity=0.712  Sum_probs=52.7

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEecC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIKVQ   79 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~   79 (139)
                      ...++|+|+|.++.+++|+|++||+|.|++..+++||+++. +|+.|+||++||+.+.
T Consensus        19 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~~~   76 (85)
T 2yuq_A           19 ETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEKS   76 (85)
T ss_dssp             SCEEEESSCCCCSCSSBCCCCBTEEEEEEECCSSSEEEEECSSSCEEEEETTTCEECC
T ss_pred             CeEEEECcCCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCEEEEehHHeEEcc
Confidence            45699999999999999999999999999998889999986 8999999999999864

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}

Probab=99.61  E-value=8.3e-16  Score=93.46  Aligned_cols=57  Identities=28%  Similarity=0.550  Sum_probs=51.5

Q ss_pred             ccEEEEEeee-cCCCCCCcccCCCCEEEEEECCCCCeeEEEEC------CeEEEEcCCcEEecC
Q psy6450          23 TNLFVVLYNF-KSRHADELDLKPGYKVTVIDTSDQNWWKGKCM------GRVGYFPSNYVIKVQ   79 (139)
Q Consensus        23 ~~~~~al~~~-~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~------g~~G~~P~~~v~~~~   79 (139)
                      ...++|+|+| .++.+++|+|++||+|.|++..+++||.|++.      |+.|+||++||+.+.
T Consensus        18 ~~~~~Alydy~~a~~~~eLsf~~GDiI~V~~~~~~gWw~G~~~~~~~~tg~~G~fPsnyV~~~~   81 (83)
T 2ke9_A           18 SLKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEVVS   81 (83)
T ss_dssp             CEEEEESSCBCCCSCTTBCCBCTTCEEEESCSSCSSCEEEEECCSSTTSCCCEEECGGGEESSC
T ss_pred             CeEEEEccccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCCCCCEEEechHHEEECC
Confidence            3469999999 89999999999999999999988899999984      689999999998764

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}

Probab=99.61  E-value=1.3e-15  Score=89.84  Aligned_cols=58  Identities=28%  Similarity=0.529  Sum_probs=52.1

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEecCCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~~   81 (139)
                      ..++|+|+|.++.++||+|++||+|.|+...+++||.|++  +|+.|+||++||+.+...
T Consensus         7 ~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~fP~~yv~~~~~~   66 (71)
T 2fpf_A            7 QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTKE   66 (71)
T ss_dssp             CCEEECSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTTEEEEEEGGGEEECC--
T ss_pred             eEEEECeeECccCCCcccCcCCcEEEEeEecCCCEEEEEECCCCCEEEeehHHEEECCCC
Confidence            3589999999999999999999999999988899999995  899999999999987643

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}

Probab=99.61  E-value=2.1e-15  Score=89.50  Aligned_cols=59  Identities=27%  Similarity=0.472  Sum_probs=53.5

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEEC--CeEEEEcCCcEEecCCCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQPGE   82 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~--g~~G~~P~~~v~~~~~~~   82 (139)
                      ..++|+|+|.++.++||+|++||+|.|+++.+++||.|++.  |+.|+||++|++.+....
T Consensus         6 ~~~~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~~yv~~~~~~~   66 (73)
T 2lcs_A            6 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQPEL   66 (73)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEEEETTTEEEEECTTSSCEEEEESTTEEECCSSC
T ss_pred             CEEEECccCCCCCCCccCCcCCCEEEEEEEcCCCEEEEEECCCCCEEEeeHHHEEECCCCC
Confidence            46999999999999999999999999999888899999993  899999999999876543

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.61  E-value=5.7e-16  Score=91.02  Aligned_cols=59  Identities=32%  Similarity=0.678  Sum_probs=53.3

Q ss_pred             CccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        22 ~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      +...++|+|+|.++.+++|+|++||+|.|+++ +++||+++.+|+.|+||++||+.+...
T Consensus         7 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (69)
T 1uhf_A            7 GGEEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKPKDSG   65 (69)
T ss_dssp             CSEEEECSSCBCCSSSSBCCBCTTCEEEECEE-ETTEEEECSTTCCEEECGGGCEECCCC
T ss_pred             CCCEEEEeeeECCCCcCccCCCCCCEEEEEEe-CCCEEEEEeCCcEEEEchHHeEECCCC
Confidence            34569999999999999999999999999988 689999999999999999999987643

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.61  E-value=8.3e-16  Score=91.03  Aligned_cols=59  Identities=25%  Similarity=0.464  Sum_probs=52.8

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEEC-CCCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDT-SDQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~-~~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      ...++|+|+|.++.++||+|++||+|.|+++ .+.+||.++.+|+.|+||.+||+.+...
T Consensus        10 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   69 (72)
T 1ugv_A           10 FRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLSGP   69 (72)
T ss_dssp             CCCEEESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEESSSCEEEEEGGGEEECCSS
T ss_pred             ccEEEEccccCCcCCCEeCCcCCCEEEEEEecCCCCeEEEEECCcEEEecHHHEEECCCC
Confidence            3459999999999999999999999998874 6779999999999999999999987653

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A

Probab=99.61  E-value=1e-15  Score=87.44  Aligned_cols=56  Identities=23%  Similarity=0.542  Sum_probs=51.7

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEecCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~   80 (139)
                      ..++|+|+|.++.+++|+|++||+|.|++. +++||.++. +|+.|+||++|++.+..
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~g~~G~~P~~yv~~~~~   58 (60)
T 1i07_A            2 KYAKSKYDFVARNSSELSVMKDDVLEILDD-RRQWWKVRNASGDSGFVPNNILDIMRT   58 (60)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEECGG-GCCEEEEECTTSCEEEEEGGGEEEECC
T ss_pred             eEEEECccCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEECCCCEEEEEHHHeEEccC
Confidence            468999999999999999999999999998 889999996 89999999999998754

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=3.7e-15  Score=88.89  Aligned_cols=58  Identities=19%  Similarity=0.523  Sum_probs=52.2

Q ss_pred             CccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE----CCeEEEEcCCcEEecCC
Q psy6450          22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC----MGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        22 ~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~----~g~~G~~P~~~v~~~~~   80 (139)
                      ....++|+|+|.++ +++|+|++||+|.|+++.+++||+++.    +|+.|+||++||+.+..
T Consensus         9 ~~~~~~alydy~~~-~~eLs~~~Gd~i~vl~~~~~gWw~g~~~~~~~g~~G~~P~~yv~~~~~   70 (75)
T 2egc_A            9 LKDVYVSIADYEGD-EETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKNS   70 (75)
T ss_dssp             CCEEEEECSCBCCC-SSSCCBCTTCEEEECEECTTSEEEEEECCSSSCEEEEEEGGGEEECCS
T ss_pred             CCeEEEECCCcCCC-CCcCCCCCCCEEEEEEcCCCCeEEEEeCCCCCCcEEEEehHHCEECCC
Confidence            34569999999999 999999999999999998889999998    36899999999998764

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=2.8e-15  Score=88.95  Aligned_cols=58  Identities=41%  Similarity=0.759  Sum_probs=52.8

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECC--CCCeeEEEECCeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTS--DQNWWKGKCMGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~~~   80 (139)
                      ...++|+|+|.++.+++|+|++||+|.|+++.  +.+||+++.+|+.|+||.+||+.+..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   66 (73)
T 2dm1_A            7 GGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEEGI   66 (73)
T ss_dssp             SSEEEESSCBCCCSTTBCCBCTTCEEECCBSSSSSSSCEEEEETTEEEEECSSSEEECCC
T ss_pred             CCEEEECccCCcCCCCcCCCCCCCEEEEEEecCCCCCeEEEEECCeEEEeehHHEEEcCC
Confidence            45699999999999999999999999999987  44999999999999999999998754

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.60  E-value=2.5e-15  Score=87.70  Aligned_cols=54  Identities=33%  Similarity=0.821  Sum_probs=51.2

Q ss_pred             EEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEec
Q psy6450          25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIKV   78 (139)
Q Consensus        25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~   78 (139)
                      .++|+|+|.++.+++|+|++||+|.|+++.+++||.+++ +|+.|+||++|++.+
T Consensus         4 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   58 (67)
T 1gl5_A            4 IVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGK   58 (67)
T ss_dssp             CEEECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEECSSSCEEEEETTSEESS
T ss_pred             EEEECccCCCCCCCeecCCcCCEEEEEEccCCCcEEEEECCCCEEEEEhHhEEEc
Confidence            489999999999999999999999999998899999996 899999999999986

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A

Probab=99.60  E-value=1.9e-15  Score=91.02  Aligned_cols=58  Identities=33%  Similarity=0.811  Sum_probs=52.2

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEecCCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~~   81 (139)
                      ..++|+|+|.++.+++|+|++||+|.|++..+++||.|++  +|+.|+||++|++.+...
T Consensus         6 ~~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   65 (79)
T 3cqt_A            6 TLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVDRL   65 (79)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEECTTSSEEEEEETTTCCEEEEEGGGEEEC---
T ss_pred             cEEEECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEeehHHeEECCcc
Confidence            3599999999999999999999999999988899999999  899999999999987654

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.60  E-value=2.5e-15  Score=88.18  Aligned_cols=58  Identities=33%  Similarity=0.689  Sum_probs=52.4

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeE-EEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRV-GYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~-G~~P~~~v~~~~~   80 (139)
                      ...++|+|+|.++.+++|+|++||+|.|+++.+++||+++..+.. |+||.+||+.+..
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~G~~P~~yv~~~~~   65 (69)
T 2eqi_A            7 GRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDISG   65 (69)
T ss_dssp             CCEEEESSCBCCCSSSCCCBCTTCEEESCCCCSSSCEEEEETTEEEEEECGGGEEECCS
T ss_pred             CcEEEECeeECCCCcCccCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEchHHcEECcc
Confidence            356999999999999999999999999999888899999996665 9999999998764

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=3e-15  Score=89.94  Aligned_cols=57  Identities=30%  Similarity=0.591  Sum_probs=52.0

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCC-CCeeEEEEC-CeEEEEcCCcEEecCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSD-QNWWKGKCM-GRVGYFPSNYVIKVQP   80 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~-~~w~~~~~~-g~~G~~P~~~v~~~~~   80 (139)
                      ..++|+|+|.++.++||+|++||+|.|+++.+ ++||++++. |+.|+||.+||+.+..
T Consensus        14 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~   72 (78)
T 2dl5_A           14 LTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQFPTS   72 (78)
T ss_dssp             EEEEECSCBCCCSTTBCCBCSSEEEEEEECCSSSSEEEEECTTCCEEEEETTTSCCSCC
T ss_pred             cEEEEceeECCCCCCCCCCCCCCEEEEEeccCCCCcEEEEeCCCCEEEEEhHHEEECCC
Confidence            35999999999999999999999999999874 899999995 9999999999987654

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=2.9e-15  Score=91.42  Aligned_cols=59  Identities=19%  Similarity=0.415  Sum_probs=54.0

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEEC--CCCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDT--SDQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~--~~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      ..+++|+|+|.++.+++|+|++||+|.|+.+  .+++||++++.|+.|+||++||+.+...
T Consensus         8 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~~   68 (85)
T 2dlp_A            8 SGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPAAAP   68 (85)
T ss_dssp             CCEEEESSCBCCSSSSBCCBCTTCEEEECCCSCCCTTEEEEESSSCEEEEETTSEEECCCS
T ss_pred             CEEEEECCCCCccCcCCccCcCCCEEEEEEccCCCCCeEEEEECCEEEEechHHeEECCCc
Confidence            3469999999999999999999999999987  7889999999999999999999987653

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=4.3e-15  Score=87.34  Aligned_cols=58  Identities=31%  Similarity=0.713  Sum_probs=53.3

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~   80 (139)
                      ...++|+|+|.++.+++|+|++||+|.|++..+++||++++  +++.|+||++|++.+..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~~~   66 (70)
T 2ct3_A            7 GTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPVSG   66 (70)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTEEEEEEEECSSSCEEEEESSSCCEEEECTTTEEETTC
T ss_pred             CcEEEECccCCcCCcCCccCCCCCEEEEEEECCCCEEEEEECCCCCEEEechHHeEECCC
Confidence            45699999999999999999999999999988899999999  48999999999998764

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.60  E-value=2.2e-15  Score=93.45  Aligned_cols=58  Identities=31%  Similarity=0.677  Sum_probs=53.3

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECC--CCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTS--DQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      ..++|+|+|.++..+||+|++||+|.|+++.  +++||+|+.+|+.|+||.+||+.+...
T Consensus         6 ~~~~Alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   65 (93)
T 1uff_A            6 SGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSS   65 (93)
T ss_dssp             CCEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEETTEEEEEETTTEEECCSS
T ss_pred             EEEEECccCCCCCCCCcCCCCCCEEEEeEccCCCCCEEEEEECCCEEEechHHeEEcCCc
Confidence            3589999999999999999999999999875  679999999999999999999988654

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A

Probab=99.60  E-value=2.8e-15  Score=87.44  Aligned_cols=57  Identities=26%  Similarity=0.609  Sum_probs=51.9

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEEC--CeEEEEcCCcEEecCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQP   80 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~--g~~G~~P~~~v~~~~~   80 (139)
                      ..++|+|+|.++.+++|+|++||+|.|+++.+++||.+++.  |+.|+||++|++.+..
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   65 (67)
T 2o9s_A            7 GEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIKR   65 (67)
T ss_dssp             EEEEECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEECTTSSCEEEEEGGGEEEEEC
T ss_pred             EEEEECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEEECCCCCEEEEChHHeEECCC
Confidence            45999999999999999999999999999888899999995  4999999999987653

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.59  E-value=2.1e-15  Score=88.55  Aligned_cols=54  Identities=31%  Similarity=0.764  Sum_probs=49.5

Q ss_pred             EEEEEeeecCCCCC-CcccCCCCEEEEEECCC-----CCeeEEEE-CCeEEEEcCCcEEec
Q psy6450          25 LFVVLYNFKSRHAD-ELDLKPGYKVTVIDTSD-----QNWWKGKC-MGRVGYFPSNYVIKV   78 (139)
Q Consensus        25 ~~~al~~~~~~~~~-eLs~~~gd~i~v~~~~~-----~~w~~~~~-~g~~G~~P~~~v~~~   78 (139)
                      .++|+|+|.++.++ ||+|++||+|.|+++.+     ++||.+++ +|++|+||++||+.+
T Consensus         9 ~~~aly~y~a~~~~dELsf~~Gd~i~Vl~~~~~~~~~~gWW~g~~~~G~~G~~PsnyV~~l   69 (69)
T 1nm7_A            9 FARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   69 (69)
T ss_dssp             CEEECSCCCCSSTTSCCCCCTTCEEEECCSSSSSCCSSSCEEEEETTTEEEEECGGGEEEC
T ss_pred             EEEEEecccCCCCCCccCCCCCCEEEEEecCCCCCCCCCeeEEEeCCCCEEEecHHHEEEC
Confidence            48999999999999 99999999999999875     49999999 899999999999753

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D

Probab=99.59  E-value=1.6e-15  Score=86.62  Aligned_cols=56  Identities=32%  Similarity=0.697  Sum_probs=49.1

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCC-CCeeEEEEC-CeEEEEcCCcEEec
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSD-QNWWKGKCM-GRVGYFPSNYVIKV   78 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~-~~w~~~~~~-g~~G~~P~~~v~~~   78 (139)
                      ...++|+|+|.++.+++|+|++||+|.|+++.+ ++||.++.. |+.|+||++|++.+
T Consensus         3 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~g~~G~~P~~yv~~l   60 (60)
T 2x3w_D            3 GVRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI   60 (60)
T ss_dssp             -CEEEECSCBCCSSSSBCCBCTTCEEEECSCCCSSSEEEEECSSCCEEEEEGGGEEC-
T ss_pred             CCEEEECcccCccCCCcccCCCCCEEEEEEccCCCCceEEEeCCCCEEEecHHHEEEC
Confidence            345899999999999999999999999998754 599999996 99999999999753

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.59  E-value=1.7e-15  Score=94.53  Aligned_cols=61  Identities=31%  Similarity=0.500  Sum_probs=54.5

Q ss_pred             CccEEEEEeeecCCC------CCCcccCCCCEEEEE-ECCCCCeeEEEE-CCeEEEEcCCcEEecCCCC
Q psy6450          22 PTNLFVVLYNFKSRH------ADELDLKPGYKVTVI-DTSDQNWWKGKC-MGRVGYFPSNYVIKVQPGE   82 (139)
Q Consensus        22 ~~~~~~al~~~~~~~------~~eLs~~~gd~i~v~-~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~~~   82 (139)
                      ....++|+|+|.++.      ++||+|++||+|.|+ ...+++||+++. +|+.|+||.+||+.+....
T Consensus        16 ~~~~~~Alydy~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~g~~G~~Psnyv~~~~~~~   84 (96)
T 1wie_A           16 KVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQDNE   84 (96)
T ss_dssp             CEEEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEETTCCBCBCCTTSEECCCSCC
T ss_pred             CCcEEEECCccCCCcccCCCCCCeeeECCCCEEEEeEecCCCCEEEEEECCCCEEEEchHHEEEcCCCC
Confidence            345699999999988      999999999999999 777889999999 8999999999999876543

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A

Probab=99.59  E-value=2.8e-15  Score=84.93  Aligned_cols=53  Identities=28%  Similarity=0.572  Sum_probs=49.5

Q ss_pred             EEEEEeee-cCCCCCCcccCCCCEEEEEECCCCCeeEEEEC--CeEEEEcCCcEEe
Q psy6450          25 LFVVLYNF-KSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIK   77 (139)
Q Consensus        25 ~~~al~~~-~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~--g~~G~~P~~~v~~   77 (139)
                      .++|+|+| .++.+++|+|++||+|.|++..+++||.|++.  |+.|+||++|+++
T Consensus         2 ~~~al~d~~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~   57 (58)
T 1zuy_A            2 MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKP   57 (58)
T ss_dssp             EEEESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEESSCSCEEEEEGGGEEC
T ss_pred             EEEEecccCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEecHHHEEE
Confidence            48999999 89999999999999999999988899999995  9999999999975

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.59  E-value=1.9e-15  Score=90.29  Aligned_cols=58  Identities=34%  Similarity=0.721  Sum_probs=53.7

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   80 (139)
                      ...++|+|+|.++.+++|+|++||+|.|+++.+++||+++.+|+.|+||.+||+.+..
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   67 (76)
T 1ujy_A           10 QLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKS   67 (76)
T ss_dssp             CEEEECCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEEETTEEEEECTTTSEECCH
T ss_pred             CEEEEECccCCcCCCCcccCCCCCEEEEEEecCCCEEEEEECCCEEEechHHEEECCc
Confidence            3469999999999999999999999999998889999999999999999999998754

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.59  E-value=2.8e-15  Score=92.23  Aligned_cols=55  Identities=36%  Similarity=0.860  Sum_probs=50.9

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECC-----CCCeeEEEE-CCeEEEEcCCcEEe
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTS-----DQNWWKGKC-MGRVGYFPSNYVIK   77 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~-----~~~w~~~~~-~g~~G~~P~~~v~~   77 (139)
                      ...++|+|+|.++.++||+|++||+|.|+++.     +++||+|+. +|+.|+||++||++
T Consensus        29 ~~~~~Alydy~a~~~~ELsf~~GD~I~Vl~~~~~~~~~~gWw~g~~~~g~~G~fP~nyV~p   89 (89)
T 2rf0_A           29 GPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVAP   89 (89)
T ss_dssp             CCEEEECSCBCCSSTTBCCBCTTCEEEEEECCHHHHSSTTEEEEECTTCCEEEEEGGGEEC
T ss_pred             CcEEEECCccCCCCCCccccCCCCEEEEEeccCCcccCCCEEEEEECCCCEEEEcHHHCcC
Confidence            45699999999999999999999999999985     789999999 99999999999963

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...

Probab=99.59  E-value=3.9e-15  Score=90.70  Aligned_cols=60  Identities=32%  Similarity=0.758  Sum_probs=54.9

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEecCCCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIKVQPGE   82 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~~~   82 (139)
                      ...++|+|+|.++.+++|+|++||+|.|++..+++||.++.  +|+.|+||++|++.+....
T Consensus         6 ~~~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~~   67 (84)
T 4ag1_C            6 VTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVDSIQ   67 (84)
T ss_dssp             CCEEEESSCBCCSBTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEETTTCC
T ss_pred             CEEEEEcccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEECCCcc
Confidence            34699999999999999999999999999998899999999  8999999999999877543

>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}

Probab=99.59  E-value=1.1e-15  Score=87.26  Aligned_cols=56  Identities=11%  Similarity=0.143  Sum_probs=49.0

Q ss_pred             ccceeccccccccCCCc-eeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESG-LSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~-l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      .+.+|.++|. ++.+++ |+|.+||+|.+....++|||.++..+|+.|+||+||||.|
T Consensus         4 ~~~rAlydy~-~~~~~e~Ls~~~Gd~i~v~~~~~~~Ww~g~~~~G~~G~fP~nyVe~i   60 (60)
T 2lx7_A            4 ARCRTLYPFS-GERHGQGLRFAAGELITLLQVPDGGWWEGEKEDGLRGWFPASYVQLL   60 (60)
T ss_dssp             CEEEESCCCC-SCCCSSCCCCCTTCEEEBSCCCTTSCEEEECTTSCEEEECGGGEEEC
T ss_pred             CEEEECcccC-CCCCCCCccCCCCCEEEEeEecCCCeEEEEeCCCCEEEEcHHHEEEC
Confidence            3578999996 666665 9999999998888888999999988889999999999986

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}

Probab=99.59  E-value=2.1e-15  Score=85.79  Aligned_cols=54  Identities=26%  Similarity=0.469  Sum_probs=50.3

Q ss_pred             EEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEEC--CeEEEEcCCcEEec
Q psy6450          25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV   78 (139)
Q Consensus        25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~--g~~G~~P~~~v~~~   78 (139)
                      .++|+|+|.++.+++|+|++||+|.|+++.+++||.++..  |+.|+||++|++.+
T Consensus         3 ~~~al~d~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~   58 (59)
T 1yn8_A            3 RAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYI   58 (59)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEECTTSSCEEEEEGGGEEEC
T ss_pred             EEEECccCCCCCCCCcCCCCCCEEEEEEcCCCCeEEEEECCCCCEEEEehHHeEEC
Confidence            5899999999999999999999999999888899999993  89999999999875

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A

Probab=99.59  E-value=6e-17  Score=97.19  Aligned_cols=55  Identities=29%  Similarity=0.722  Sum_probs=50.9

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEe
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIK   77 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~   77 (139)
                      ...++|+|+|.++..++|+|++||+|.|++..+++||.+++ +|+.|+||++||+.
T Consensus        20 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~   75 (77)
T 1awj_A           20 ETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVE   75 (77)
T ss_dssp             SSCCCCCCCBCCCCTTSCCBCSSSCCSCCCTTSSSBCCCCCSSSCCCCCBSTTCCC
T ss_pred             ceEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEECCCCEEEEehHHEEE
Confidence            35699999999999999999999999999998889999997 89999999999975

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=5.7e-15  Score=92.27  Aligned_cols=61  Identities=28%  Similarity=0.636  Sum_probs=53.4

Q ss_pred             CCccEEEEEeeecCC--------CCCCcccCCCCEEEEEEC-CCCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          21 LPTNLFVVLYNFKSR--------HADELDLKPGYKVTVIDT-SDQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        21 ~~~~~~~al~~~~~~--------~~~eLs~~~gd~i~v~~~-~~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      .+...++|+|+|.++        ..++|+|++||+|.|+.+ ..++||+++.+|+.|+||.+||+.+...
T Consensus        15 ~~~~~~~Alydy~~~~~~~~~~~~~~eLsf~~Gd~i~vl~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   84 (97)
T 2csq_A           15 LPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETCARLGLIPCNMVSEIQAD   84 (97)
T ss_dssp             CCCEEEECSSCBCTTTTSSCHHHHTTBCCBCTTCEEEEEEEECTTCEEEEEETTEEEEEETTTSEECCCC
T ss_pred             CCceEEEEccccCCCcccccCCCCCCccCCCCCCEEEEEEecCCCCeEEEEECCcEEEEehHHeEECCCC
Confidence            345569999999999        799999999999999964 5568999999999999999999988654

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=99.59  E-value=7.3e-16  Score=90.23  Aligned_cols=58  Identities=29%  Similarity=0.681  Sum_probs=53.3

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      ..++|+|+|.++.++||+|++||+|.|+++.+++||.++.+|+.|+||.+||+.+...
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 1wi7_A            8 RRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGP   65 (68)
T ss_dssp             CCEEESSCBCCSSTTBCCBCTTCEECCCEEEETTEEEECSTTCCEEEETTSEEECCSS
T ss_pred             CEEEECccCCcCCCCCccCcCCCEEEEEEcCCCCeEEEEECCcEEEEchHHEEECCCC
Confidence            4599999999999999999999999999887789999999999999999999987653

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=4.1e-15  Score=89.54  Aligned_cols=57  Identities=23%  Similarity=0.465  Sum_probs=52.8

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~   80 (139)
                      ...++|+|+|.++.++||+|++||+|.|++. +++||++++  +|+.|+||++||+.+..
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~gW~~g~~~~~g~~G~fP~~yv~~~~~   75 (79)
T 1x6b_A           17 LPQVEITKAFFAKQADEVTLQQADVVLVLQQ-EDGWLYGERLRDGETGWFPEDFARFISG   75 (79)
T ss_dssp             CCEEEESSCCCCCSSSBCCCCTTEEEEEEEE-ETTEEEEEETTTCCEEEECGGGCEEEES
T ss_pred             CCEEEECeeECCCCcCCcCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEchHHEEECCC
Confidence            4569999999999999999999999999998 889999999  89999999999998754

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}

Probab=99.59  E-value=2.9e-15  Score=88.11  Aligned_cols=57  Identities=26%  Similarity=0.597  Sum_probs=52.1

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEEC--CeEEEEcCCcEEecCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKVQP   80 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~--g~~G~~P~~~v~~~~~   80 (139)
                      ..++|+|+|.++.+++|+|++||+|.|+++.+++||++++.  |+.|+||.+||+.+..
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   66 (70)
T 2ecz_A            8 GEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVISG   66 (70)
T ss_dssp             BCEEESSCCCCCSTTBCCCCTTCBCEEEEEEETTEEEEEETTTTEEEEECTTTEEESSS
T ss_pred             CEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHEEECCC
Confidence            35999999999999999999999999999877899999995  4999999999998764

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.59  E-value=6.8e-15  Score=90.83  Aligned_cols=59  Identities=37%  Similarity=0.762  Sum_probs=53.4

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEEC--CCCCeeEEEE-CCeEEEEcCCcEEecCCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDT--SDQNWWKGKC-MGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~--~~~~w~~~~~-~g~~G~~P~~~v~~~~~~   81 (139)
                      ...++|+|+|.++.++||+|++||+|.|+++  .+.+||++++ +|+.|+||.+||+.+...
T Consensus        17 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~   78 (91)
T 1wx6_A           17 LHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDG   78 (91)
T ss_dssp             CEEEEESSCCCCSSSSBCCCCTTCEEEEEECCSSCTTEEEEECTTCCEEEEEGGGEEEEEES
T ss_pred             cEEEEEeecCCcCCCCcccCCCCCEEEEEECCCCCCCcEEEEeCCCCEEEEchHHEEECCCc
Confidence            3569999999999999999999999999998  5789999995 899999999999987654

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=3.6e-15  Score=91.56  Aligned_cols=58  Identities=38%  Similarity=0.747  Sum_probs=54.0

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      ..++|+|+|.++.++||+|++||+|.|+++.+++||+++++++.|+||.+||+.+...
T Consensus        18 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   75 (88)
T 2cub_A           18 MPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTEEGDS   75 (88)
T ss_dssp             EEEEESSCCCCCSTTBCCCCTTEEEEEEEECTTSEEEEEETTEEEEEEGGGEEECCCC
T ss_pred             CEEEEccccCCCCCCCcCCCCCCEEEEEEccCCCeEEEEECCcEEEEehHHEEECCCc
Confidence            3599999999999999999999999999998889999999999999999999987654

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.58  E-value=2.7e-15  Score=85.09  Aligned_cols=51  Identities=27%  Similarity=0.620  Sum_probs=48.4

Q ss_pred             EEEEeeecCCCCCCcccCCCCEEEEEECCC-CCeeEEEE--CCeEEEEcCCcEE
Q psy6450          26 FVVLYNFKSRHADELDLKPGYKVTVIDTSD-QNWWKGKC--MGRVGYFPSNYVI   76 (139)
Q Consensus        26 ~~al~~~~~~~~~eLs~~~gd~i~v~~~~~-~~w~~~~~--~g~~G~~P~~~v~   76 (139)
                      ++|+|+|.++.+++|+|++||+|.|++..+ ++||.+++  +|+.|+||++|++
T Consensus         4 ~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~~g~~G~~P~~yv~   57 (58)
T 1zuu_A            4 NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR   57 (58)
T ss_dssp             CEECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEE
T ss_pred             EEEeeeECCcCCCcccCCCCCEEEEeEcCCCCCCEEEEECCCCCEEEEEHHHEE
Confidence            789999999999999999999999999886 79999999  8999999999986

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}

Probab=99.58  E-value=3.7e-15  Score=86.95  Aligned_cols=56  Identities=18%  Similarity=0.395  Sum_probs=50.9

Q ss_pred             cEEEEEeeecC-CCCCCcccCCCCEEEEEEC-CCCCeeEEEEC--CeEEEEcCCcEEecC
Q psy6450          24 NLFVVLYNFKS-RHADELDLKPGYKVTVIDT-SDQNWWKGKCM--GRVGYFPSNYVIKVQ   79 (139)
Q Consensus        24 ~~~~al~~~~~-~~~~eLs~~~gd~i~v~~~-~~~~w~~~~~~--g~~G~~P~~~v~~~~   79 (139)
                      ..++|+|+|.+ +.+++|+|++||+|.|+++ .+++||.+++.  |+.|+||++|++.+.
T Consensus         7 ~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   66 (67)
T 2kxc_A            7 QKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLLE   66 (67)
T ss_dssp             CEEEESSCBCCSSCSSBCCBCTTCEEEESSSSCBTTEEEEEESSSCCEEEEEGGGEEESC
T ss_pred             EEEEEeecCCCCCCCCCCcCCCCCEEEEeECCCCCCcEEEEECCCCCEEEEehHHeEECC
Confidence            46999999996 8999999999999999985 77899999995  999999999998764

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A

Probab=99.58  E-value=2.6e-15  Score=89.30  Aligned_cols=56  Identities=34%  Similarity=0.650  Sum_probs=51.4

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECC-CCCeeEEEECCeEEEEcCCcEEecC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTS-DQNWWKGKCMGRVGYFPSNYVIKVQ   79 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~-~~~w~~~~~~g~~G~~P~~~v~~~~   79 (139)
                      ..++|+|+|.++.++||+|++||+|.|+++. +.+||.++.+|+.|+||++||+.+.
T Consensus        10 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   66 (74)
T 1gbq_A           10 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKP   66 (74)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEECCBCSSCSSEEEEEETTEEEEEEGGGEEEEC
T ss_pred             eEEEECccCCCCCCCeeeEcCCCEEEEeEecCCCCEEEEEECCCEEEEehHhEEEcC
Confidence            4599999999999999999999999999887 5689999999999999999998654

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.58  E-value=3.4e-15  Score=88.29  Aligned_cols=58  Identities=17%  Similarity=0.352  Sum_probs=52.4

Q ss_pred             ccEEEEEeeecC-CCCCCcccCCCCEEEEEEC-CCCCeeEEEEC--CeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKS-RHADELDLKPGYKVTVIDT-SDQNWWKGKCM--GRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~-~~~~eLs~~~gd~i~v~~~-~~~~w~~~~~~--g~~G~~P~~~v~~~~~   80 (139)
                      ...++|+|+|.+ +.+++|+|++||+|.|+++ .+++||++++.  |+.|+||.+||+.+..
T Consensus         7 ~~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~~   68 (72)
T 1spk_A            7 GQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLSG   68 (72)
T ss_dssp             SCEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEECSS
T ss_pred             ceEEEEeeeeCCCCCCCCCcCCCCCEEEEeEccCCCCcEEEEECCCCCEEEEehHHeEECCC
Confidence            346999999996 8999999999999999987 67899999996  9999999999998764

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.58  E-value=6.3e-16  Score=96.79  Aligned_cols=74  Identities=19%  Similarity=0.309  Sum_probs=61.4

Q ss_pred             CCeEEEEcCCcEEecCCCC----------ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeec
Q psy6450          64 MGRVGYFPSNYVIKVQPGE----------RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPL  133 (139)
Q Consensus        64 ~g~~G~~P~~~v~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~  133 (139)
                      +|+.||||.+|++.+....          ...++.++|. +..+++|+|.+||+|.+.....+|||.++ .+|+.|+||+
T Consensus         6 ~g~~G~fP~~~v~~~~~~~~~~~p~~~~~~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~   83 (98)
T 1udl_A            6 SGQKGWFPASHVKLLGPSSERATPAFHPVCQVIAMYDYA-ANNEDELSFSKGQLINVMNKDDPDWWQGE-INGVTGLFPS   83 (98)
T ss_dssp             SSCCSSCCCCCCCCCSCCCCCCCSCCCCSEEEEESSCCC-CSSTTSCCCCTTCEEEECBCCSSSEEBCB-SSSCBCCEET
T ss_pred             CCCEeEEEhhhEEEcCCcccccCCCCCCceEEEECCCCC-CCCCCccCCcCCCEEEEEEecCCCEEEEE-ECCcEEEEeh
Confidence            5788999999999766322          2356888996 77888999999999988887778999888 5679999999


Q ss_pred             CCEEeC
Q psy6450         134 KYLQEV  139 (139)
Q Consensus       134 ~~v~~~  139 (139)
                      +||+.+
T Consensus        84 ~yv~~~   89 (98)
T 1udl_A           84 NYVKMT   89 (98)
T ss_dssp             TSEEEC
T ss_pred             HHeEEc
Confidence            999864

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.58  E-value=4.8e-15  Score=88.13  Aligned_cols=59  Identities=24%  Similarity=0.553  Sum_probs=53.2

Q ss_pred             CccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        22 ~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      ....++|+|+|.++.+++|+|++||+|.|++.. ++||+++.+|+.|+||.+||+.+...
T Consensus         9 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~g~~G~~P~~yv~~~~~~   67 (74)
T 1j3t_A            9 ENLKAQALCSWTAKKDNHLNFSKHDIITVLEQQ-ENWWFGEVHGGRGWFPKSYVKIIPGS   67 (74)
T ss_dssp             CCCEEEESSCBCCCSTTBCCBCTTCEEEEEEEC-SSEEEEESTTCCCEEEGGGEEECCCS
T ss_pred             CCeEEEECCCCCCCCCCccCCCCCCEEEEEecC-CCEEEEEECCcEEEEchHHeEECCCC
Confidence            345699999999999999999999999999984 78999999999999999999987653

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}

Probab=99.58  E-value=5.4e-15  Score=86.51  Aligned_cols=57  Identities=39%  Similarity=0.686  Sum_probs=51.9

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~   80 (139)
                      ...++|+|+|.++.++||+|++||+|.|+++. ++||+++. +|+.|+||.+|++.+..
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~~g~~G~~P~~yv~~~~~   64 (68)
T 1wxt_A            7 GLKMQVLYEFEARNPRELTVVQGEKLEVLDHS-KRWWLVKNEAGRSGYIPSNILEPLSG   64 (68)
T ss_dssp             CEEEEESSCBCCCSSSBCCBCTTCEEEEEECS-SSEEEEECTTSCEEEEEGGGEECCCC
T ss_pred             CeEEEECceECCCCcCcCCCCCCCEEEEEEcC-CCEEEEEECCCCEEEEEhHHcEECCC
Confidence            34699999999999999999999999999985 89999994 89999999999998764

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A

Probab=99.58  E-value=5.5e-15  Score=91.42  Aligned_cols=59  Identities=29%  Similarity=0.693  Sum_probs=53.6

Q ss_pred             ccEEEEEeeecCCCCC-CcccCCCCEEEEEECCCC-----CeeEEEE-CCeEEEEcCCcEEecCCC
Q psy6450          23 TNLFVVLYNFKSRHAD-ELDLKPGYKVTVIDTSDQ-----NWWKGKC-MGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~-eLs~~~gd~i~v~~~~~~-----~w~~~~~-~g~~G~~P~~~v~~~~~~   81 (139)
                      ..+++|+|+|.++.++ +|+|++||+|.|+++.+.     +||+|++ +|+.|+||.+||+.+...
T Consensus        14 ~~~~~alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~~~~~gWw~g~~~~g~~G~~P~~yv~~~~~~   79 (92)
T 1jqq_A           14 LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIKRR   79 (92)
T ss_dssp             CEEEEESSBBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEEETTSCEEEEEGGGEEECCCC
T ss_pred             CEEEEECccCCCCCCCCCcCCCCCCEEEEEECCCCCCCCCCCeEEEeCCCCEEEEehHHeEECCCC
Confidence            4569999999999999 999999999999998765     9999999 899999999999987653

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}

Probab=99.58  E-value=1.2e-15  Score=94.44  Aligned_cols=61  Identities=28%  Similarity=0.647  Sum_probs=55.5

Q ss_pred             CccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCCC
Q psy6450          22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE   82 (139)
Q Consensus        22 ~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~   82 (139)
                      ....++|+|+|.++.+++|+|++||+|.|++..+++||.|+.+|+.|+||++||+.+....
T Consensus        17 ~~~~~~Alydy~a~~~~eLsf~~Gd~i~V~~~~~~gWw~g~~~g~~G~fPsnyV~~~~~~~   77 (92)
T 2o2o_A           17 RRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGES   77 (92)
T ss_dssp             SSCEEEECSCBCCCSSSCCCBCSSCEEECCCGGGSSCBCCEETTEECCBCSSSEECCSSCS
T ss_pred             CCeEEEEccccCCCCCccccccCCCEEEEeEecCCCEEEEEECCeEEEeehHHEEECCCCC
Confidence            3456999999999999999999999999999888899999999999999999999877544

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=4.1e-15  Score=88.91  Aligned_cols=58  Identities=29%  Similarity=0.538  Sum_probs=52.2

Q ss_pred             ccEEEEEeeecCCC-------CCCcccCCCCEEEEEECCC-CCeeEEEECCeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRH-------ADELDLKPGYKVTVIDTSD-QNWWKGKCMGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~-------~~eLs~~~gd~i~v~~~~~-~~w~~~~~~g~~G~~P~~~v~~~~~   80 (139)
                      ...++|+|+|.++.       .++|+|++||+|.|+++.+ ++||.++.+|+.|+||++||+.+..
T Consensus         7 ~~~~~Al~dy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~   72 (76)
T 2csi_A            7 GRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLEEVSG   72 (76)
T ss_dssp             SEEEECSSCCCTTTTSCSSSTTTSCCCCTTCEEEEESSCCSSSEEEEEETTEEEEEEGGGCCBCCC
T ss_pred             ccEEEEcccCCCCCcccCCCCCCcccCCCCCEEEEeEecCCCCeEEEEECCcEEEEehHHEEECCC
Confidence            45699999999998       9999999999999999865 4899999999999999999987654

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=1.4e-15  Score=89.77  Aligned_cols=57  Identities=14%  Similarity=0.217  Sum_probs=52.1

Q ss_pred             cEEEEEeeecC-CCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEecCC
Q psy6450          24 NLFVVLYNFKS-RHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        24 ~~~~al~~~~~-~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~   80 (139)
                      ..++|+|+|.+ +.++||+|++||+|.|++..+++||++++  +|+.|+||++||+.+..
T Consensus         8 ~~~~Alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~~~   67 (71)
T 2gqi_A            8 RRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVSG   67 (71)
T ss_dssp             CCEEESSCCCCCTTSSCCCCCTTCBCCCCEECSSSCEEEECTTTCCEEEECTTSEEECCC
T ss_pred             CEEEECcccCCCCCCCCCCCCCCCEEEEEEecCCCEEEEEECCCCCEEEeeHHHEEECCC
Confidence            45999999999 99999999999999999988889999994  78999999999998754

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.58  E-value=9.2e-15  Score=88.12  Aligned_cols=58  Identities=22%  Similarity=0.596  Sum_probs=52.8

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEEC-----CeEEEEcCCcEEecCCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-----GRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~-----g~~G~~P~~~v~~~~~~   81 (139)
                      .+++|+|+|.++.+++|+|++||+|.|+++.+++||++++.     ++.|+||.+||+.+...
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~~~~G~fP~~yv~~~~~~   70 (80)
T 1ue9_A            8 EIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPS   70 (80)
T ss_dssp             EEEEECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEECCSC
T ss_pred             eEEEECcccCCCCCCCCCCCCCCEEEEEEecCCCcEEEEECCCCCCCcEEEEchHHeEECCCC
Confidence            46999999999999999999999999999888999999984     48999999999987653

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.57  E-value=6e-15  Score=88.25  Aligned_cols=58  Identities=38%  Similarity=0.851  Sum_probs=53.2

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEEC---CeE------EEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM---GRV------GYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~---g~~------G~~P~~~v~~~~~   80 (139)
                      ..+++|+|+|.++.+++|+|++||+|.|+++.+++||.++..   |+.      |+||.+||+.+..
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~~~~~~~G~~P~~yv~~~~~   73 (77)
T 2d8j_A            7 GQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAEDSG   73 (77)
T ss_dssp             CEEEEESSCBCCSSSSBCCBCTTCCEEEEECCSSSEEEEEECSSCCSSCCCCSEEEEETTTEEECCC
T ss_pred             CCEEEEccCCCCCCCCccCCCCCCEEEEEECCCCCeEEEEECCCCCcCcccCCceEECHHHeeEcCC
Confidence            346999999999999999999999999999988999999995   888      9999999998764

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}

Probab=99.57  E-value=2.4e-15  Score=88.41  Aligned_cols=58  Identities=40%  Similarity=0.758  Sum_probs=52.7

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~   80 (139)
                      ...++|+|+|.++.+++|+|++||+|.|+++.+++||++++  +|+.|+||++||+.+..
T Consensus         7 ~~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   66 (70)
T 2cuc_A            7 GNMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVSG   66 (70)
T ss_dssp             SCCEECCSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEEETTTCCEEEEEGGGCEECCC
T ss_pred             CcEEEECeeECcCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHeEECcC
Confidence            34599999999999999999999999999988889999994  89999999999998764

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}

Probab=99.57  E-value=8.1e-15  Score=86.71  Aligned_cols=57  Identities=26%  Similarity=0.685  Sum_probs=51.9

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~   80 (139)
                      ...++|+|+|.++.+++|+|++||+|.|++. +++||+++. +|+.|+||++||+.+..
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~~~~   64 (72)
T 2jw4_A            7 EVVVVAKFDYVAQQEQELDIKKNERLWLLDD-SKSWWRVRNSMNKTGFVPSNYVERKNS   64 (72)
T ss_dssp             CEEEECSSCCCCSSTTSCCCCTTCEEEEEEC-SSSSEEEECTTSCEEEECTTSCEECCC
T ss_pred             CeEEEECcCCCcCCCCcccCCCCCEEEEEEC-CCCEEEEEECCCCEEEEEhhHEEEcCC
Confidence            3469999999999999999999999999997 569999997 89999999999998764

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.57  E-value=4.8e-15  Score=86.45  Aligned_cols=56  Identities=18%  Similarity=0.393  Sum_probs=49.2

Q ss_pred             ccEEEEEeeecCCCCCC-cccCCCCEEEEEEC-CCCCeeEEEE--CCeEEEEcCCcEEec
Q psy6450          23 TNLFVVLYNFKSRHADE-LDLKPGYKVTVIDT-SDQNWWKGKC--MGRVGYFPSNYVIKV   78 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~e-Ls~~~gd~i~v~~~-~~~~w~~~~~--~g~~G~~P~~~v~~~   78 (139)
                      ...++|+|+|.++.+++ |+|++||+|.|+.. .+++||.|++  +|+.|+||++||+.+
T Consensus         7 ~~~~~al~dy~~~~~~e~Lsf~~Gd~i~v~~~~~~~gW~~g~~~~~g~~G~fP~~yv~~l   66 (67)
T 3rnj_A            7 RMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVL   66 (67)
T ss_dssp             CCEEEESSCBCCCSCTTBCCBCTTCEEEECSSSCBTTEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CeEEEEccccCCCCCCCCccCCCCCEEEEeeccCCCCCEEEEECCCCCEEEEEHHHeEEC
Confidence            34699999999998777 99999999999854 5779999995  799999999999875

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=1.4e-14  Score=85.21  Aligned_cols=57  Identities=18%  Similarity=0.497  Sum_probs=51.4

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCC-CCeeEEEEC-CeEEEEcCCcEEecCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSD-QNWWKGKCM-GRVGYFPSNYVIKVQP   80 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~-~~w~~~~~~-g~~G~~P~~~v~~~~~   80 (139)
                      ..++|+|+|.++.++||+|++||+|.|++..+ ++||.++.. |+.|+||.+|++.+..
T Consensus         8 ~~~~alydy~~~~~~eLs~~~Gd~i~vl~~~~~~gW~~~~~~~g~~G~~P~~yv~~~~~   66 (70)
T 2ct4_A            8 GHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLRVTSG   66 (70)
T ss_dssp             CEEEESSCBCCCSTTCCCBCTTCEEEEEECCSSSCEEEEECSSSCEEEEEGGGEEECCC
T ss_pred             CEEEEcccCCCCCCCcCCCCCCCEEEEEeccCCCCeEEEEeCCCCEEEEEhHHeEEcCC
Confidence            46999999999999999999999999999864 569999995 9999999999998654

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A

Probab=99.57  E-value=6.9e-16  Score=90.07  Aligned_cols=57  Identities=32%  Similarity=0.741  Sum_probs=52.2

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEecC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIKVQ   79 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~   79 (139)
                      ...++|+|+|.++.+++|+|++||+|.|++..+++||.++. +|+.|+||++|++.+.
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   65 (67)
T 1aww_A            8 LKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE   65 (67)
T ss_dssp             CCEEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCTTSCBCCEETTTBCCSC
T ss_pred             CeEEEECccCCCCCCCCccCCCCCEEEEEEccCCCcEEEEECCCCEEEEchHhEEEcC
Confidence            45699999999999999999999999999988889999995 8999999999998754

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.56  E-value=3.3e-15  Score=90.07  Aligned_cols=58  Identities=29%  Similarity=0.710  Sum_probs=51.7

Q ss_pred             ccEEEEEeeecCCCCC-CcccCCCCEEEEEECCCC-----CeeEEEE-CCeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRHAD-ELDLKPGYKVTVIDTSDQ-----NWWKGKC-MGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~-eLs~~~gd~i~v~~~~~~-----~w~~~~~-~g~~G~~P~~~v~~~~~   80 (139)
                      ..+++|+|+|.++.++ +|+|++||+|.|+++.+.     +||+|++ +|+.|+||++|++.+..
T Consensus        14 ~~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~   78 (80)
T 2v1r_A           14 LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIKR   78 (80)
T ss_dssp             CEEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC--
T ss_pred             CEEEEECccCCCCCCCCEecCCCCCEEEEEECCCCCCCCCCcEEEEeCCCCeEEEEHHHeEEcCC
Confidence            3569999999999999 999999999999998765     8999999 89999999999998753

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*

Probab=99.56  E-value=1.2e-15  Score=104.77  Aligned_cols=57  Identities=26%  Similarity=0.726  Sum_probs=51.8

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~   80 (139)
                      ...++|+|+|.++.++||+|++||+|.|++. +++||.++.  +|++|+||.+|++....
T Consensus        12 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~~g~~G~vP~~yv~~~~~   70 (175)
T 4d8k_A           12 DNLVIALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNFVAKANS   70 (175)
T ss_dssp             -CEEEESSCBCCCSSSBCCBCTTCEEEEEEC-CSSEEEEEETTTCCEEEEEGGGEEETTC
T ss_pred             CcEEEEccCcCCcCCcccccccCCEEEEEcc-CCCEEEEEECCCCceeeecccccccccc
Confidence            3579999999999999999999999999998 679999999  89999999999997654

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=4.9e-15  Score=86.69  Aligned_cols=56  Identities=29%  Similarity=0.657  Sum_probs=51.2

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEecCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~   80 (139)
                      ..++|+|+|.++.++||+|++||+|.|+++. ++||+++. +|+.|+||++|++.+..
T Consensus         8 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~~g~~G~~P~~yv~~~~~   64 (68)
T 1wxb_A            8 KYVKILYDFTARNANELSVLKDEVLEVLEDG-RQWWKLRSRSGQAGYVPCNILGEASG   64 (68)
T ss_dssp             CCEECSSCBCCSSSSBCCBCTTCEEEEEECS-SSEEEEECTTSCEEEEETTTCCBCCC
T ss_pred             EEEEECccCCCCCCCccCCCCCCEEEEEEcC-CCEEEEEECCCCEEEEEHHHeEECCC
Confidence            4589999999999999999999999999985 89999997 89999999999987653

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=99.56  E-value=5.7e-15  Score=87.29  Aligned_cols=56  Identities=32%  Similarity=0.703  Sum_probs=51.0

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE---CCeE---EEEcCCcEEecC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC---MGRV---GYFPSNYVIKVQ   79 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~---~g~~---G~~P~~~v~~~~   79 (139)
                      ...++|+|+|.++.+++|+|++||+|.| +..+++||.++.   +|+.   |+||++|++.+.
T Consensus        10 ~~~~~alydy~~~~~~eLs~~~Gd~i~v-~~~~~~Ww~g~~~~~~g~~~~~G~~P~~yv~~~~   71 (72)
T 2kgt_A           10 GPKYVGLWDFKSRTDEELSFRAGDVFHV-ARKEEQWWWATLLDEAGGAVAQGYVPHNYLAERE   71 (72)
T ss_dssp             CCEEECCTTCBCSSTTSCBCCTTCCEEE-EEECSSCEEEEEECTTSCEEEEEEECTTTSEEEC
T ss_pred             CcEEEEcccCCCCCcCCcCCCCCCEEEE-eeCCCCEEEEEEcCCCCCEeCCcEEcHhHEEEcc
Confidence            3469999999999999999999999999 887889999999   6999   999999998753

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.56  E-value=1.2e-14  Score=86.95  Aligned_cols=58  Identities=28%  Similarity=0.534  Sum_probs=52.6

Q ss_pred             cEEEEEeeecCC-CCCCcccCCCCEEEEEECC-CCCeeEEEE-CCeEEEEcCCcEEecCCC
Q psy6450          24 NLFVVLYNFKSR-HADELDLKPGYKVTVIDTS-DQNWWKGKC-MGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        24 ~~~~al~~~~~~-~~~eLs~~~gd~i~v~~~~-~~~w~~~~~-~g~~G~~P~~~v~~~~~~   81 (139)
                      ..++|+|+|.++ .+++|+|++||+|.|++.. +++||++++ +|+.|+||.+||+.+...
T Consensus        10 ~~~~al~dy~~~~~~~eLs~~~Gd~i~v~~~~~~~gW~~g~~~~g~~G~~P~~yv~~~~~~   70 (77)
T 2enm_A           10 TKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEILPND   70 (77)
T ss_dssp             EEEEESSCCCCCTTSSBCCCCTTCEEEEEESCCSSSEEEEECTTCCEEEEETTTEEEECCC
T ss_pred             cEEEECccCCCCCCCCeecCCCCCEEEEeEccCCCCeEEEEECCCCEEEeehHHeEECCCC
Confidence            459999999999 9999999999999999985 789999995 899999999999987643

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}

Probab=99.55  E-value=4.6e-15  Score=88.91  Aligned_cols=70  Identities=24%  Similarity=0.530  Sum_probs=60.8

Q ss_pred             CCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCCC--ccceeccccccccCCCceeeec
Q psy6450          34 SRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE--RPLQVTHNLQIADGESGLSLLR  104 (139)
Q Consensus        34 ~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~  104 (139)
                      ++..+||+|++||+|.|+++.+++||+++.+|+.|+||++||+.+....  ....+.++|. ++.+++|+|.+
T Consensus         2 a~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~~~~~~alydy~-a~~~dElsf~~   73 (77)
T 2jmc_A            2 AMGPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKELVLALYDYQ-ESGDNAPSYSP   73 (77)
T ss_dssp             CSSSCCCCCCTTCEEECCCCCCSSCCCEEETTEEECCCGGGEEECCCSSCCCEEEESSCCC-CSSCCCCCSCC
T ss_pred             CcCCCccCCCCCCEEEEEEecCCCEEEEEECCcEEEEEeeEEEEcCCCCCCceEEECCCcC-CCCCCccccCC
Confidence            4678999999999999999988999999999999999999999887543  3566888996 88888999875

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=1.9e-14  Score=89.32  Aligned_cols=59  Identities=27%  Similarity=0.579  Sum_probs=52.7

Q ss_pred             CccEEEEEeeecCCCCCCcccCCCCEEEEEEC--CC--CCeeEEE--ECCeEEEEcCCcEEecCC
Q psy6450          22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDT--SD--QNWWKGK--CMGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        22 ~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~--~~--~~w~~~~--~~g~~G~~P~~~v~~~~~   80 (139)
                      ....++|+|+|.++.++||+|++||+|.|++.  .+  ++||+++  .+|+.|+||.+||+.+..
T Consensus        15 ~~~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~~   79 (94)
T 2e5k_A           15 NHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKADE   79 (94)
T ss_dssp             CCEEEEECSCBCCSSSSBCCBCTTCEEEECGGGCCSTTTTEEEEEESSSCCEEEEEGGGEEECCS
T ss_pred             CCeEEEECCcCCCCCCCCcCCCCCCEEEEEECcCCCCCCCcEEEEECCCCCEEEechHHeEEccc
Confidence            34579999999999999999999999999987  34  8999999  589999999999998764

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A

Probab=99.53  E-value=9.6e-15  Score=92.86  Aligned_cols=58  Identities=28%  Similarity=0.502  Sum_probs=50.8

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEEC-CCC--CeeEEEEC--------CeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDT-SDQ--NWWKGKCM--------GRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~-~~~--~w~~~~~~--------g~~G~~P~~~v~~~~~   80 (139)
                      ...++|+|+|.++.+++|+|++||+|.|+++ .+.  +||.|+..        |+.|+||++||+.+..
T Consensus        22 ~~~~~Alydy~a~~~~ELsf~~GDiI~Vl~k~~~~g~dWW~G~~~~~~~~~~~g~~G~fPsnYV~~~~~   90 (108)
T 1i1j_A           22 ISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQT   90 (108)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEEE
T ss_pred             eeEEEECCccCCCCCCccccCCCCEEEEEEecCCCCCCEEEEEECCccccCCCCCEEEEchhHEEEccc
Confidence            4569999999999999999999999999987 333  49999985        8999999999987653

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.53  E-value=8.6e-15  Score=91.58  Aligned_cols=60  Identities=32%  Similarity=0.763  Sum_probs=54.6

Q ss_pred             CccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        22 ~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      +...++|+|+|.++.++||+|++||+|.|+++.+++||.++.+|+.|+||.+||+.+...
T Consensus        33 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   92 (98)
T 1udl_A           33 PVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDS   92 (98)
T ss_dssp             CSEEEEESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBSSSCBCCEETTSEEECCCC
T ss_pred             CceEEEECCCCCCCCCCccCCcCCCEEEEEEecCCCEEEEEECCcEEEEehHHeEEcCCC
Confidence            345699999999999999999999999999998889999999999999999999987654

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}

Probab=99.53  E-value=2.4e-14  Score=88.14  Aligned_cols=58  Identities=34%  Similarity=0.800  Sum_probs=51.6

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEecCCCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIKVQPGE   82 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~~~   82 (139)
                      ..++|+|+|.++.+++|+|++||+|.|++. +++||.|+.  +|+.|+||++|++.+....
T Consensus         4 ~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~~   63 (90)
T 3reb_B            4 IIVVALYDYVSWSPDDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVDSGG   63 (90)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEC-SSSEEEEEETTTCCEEEEEGGGEEEECC--
T ss_pred             EEEEECCccCcCCcCcCCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEehhheEECCCCC
Confidence            468999999999999999999999999998 478999998  7999999999999876543

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}

Probab=99.52  E-value=3.7e-14  Score=91.69  Aligned_cols=55  Identities=27%  Similarity=0.493  Sum_probs=50.3

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE---CCeEEEEcCCcEEec
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC---MGRVGYFPSNYVIKV   78 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~---~g~~G~~P~~~v~~~   78 (139)
                      ..+++|+|+|.++.++||+|++||+|.|+++. ++||+|++   +|+.|+||++||+.+
T Consensus        59 ~~~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~-~gWw~g~~~~~~g~~G~fP~nyV~~~  116 (119)
T 2rqr_A           59 ERHGVAIYNFQGSGAPQLSLQIGDVVRIQETC-GDWYRGYLIKHKMLQGIFPKSFIHIK  116 (119)
T ss_dssp             CEEEEBCSCBCCCSTTBCCBCTTCEEEEEEEE-TTEEEEEESSCTTCEEEEEGGGBCCC
T ss_pred             ceEEEEccccCCCCCCcccCcCCCEEEEEEcC-CCEEEEEECCCCCCEEEeChhHEEEe
Confidence            34699999999999999999999999999985 69999999   799999999999764

>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A

Probab=99.52  E-value=2.5e-14  Score=82.92  Aligned_cols=55  Identities=18%  Similarity=0.225  Sum_probs=48.3

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEe-CCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRN-GENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~-~~~~~G~~P~~~v~~~  139 (139)
                      .++|.++|. ++.+++|+|.+||+|.+....++|||.++. .+|+.|+||++||+.|
T Consensus         8 ~~~Alydy~-a~~~~ELs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~nyVe~l   63 (65)
T 2lj0_A            8 SYQALYSYI-PQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKPL   63 (65)
T ss_dssp             EEEESSCBC-CSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEETTSEEEC
T ss_pred             EEEEceeEC-CCCcCCcCCCCCCEEEEeEeCCCCEEEEEECCCCCEEEEehhHeEEE
Confidence            568899996 888889999999999888877899999885 4679999999999976

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}

Probab=99.52  E-value=2.2e-14  Score=84.34  Aligned_cols=56  Identities=29%  Similarity=0.579  Sum_probs=49.6

Q ss_pred             cEEEEEeeecCCCCC--CcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEecCC
Q psy6450          24 NLFVVLYNFKSRHAD--ELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        24 ~~~~al~~~~~~~~~--eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~   80 (139)
                      ..++|+|+|.++..+  +|+|++||+|.|++. +++||.++. +|+.|+||++||+.+..
T Consensus         6 ~~~~alydy~~~~~~~~eLsf~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~~~~   64 (70)
T 2vkn_A            6 YKAKALYPYDADDDDAYEISFEQNEILQVSDI-EGRWWKARRANGETGIIPSNYVQLIDG   64 (70)
T ss_dssp             EEEEESSCBCCCSSSTTBCCBCTTCEEEEECT-TSSEEEEECTTSCEEEEEGGGEEEEEE
T ss_pred             EEEEECccCCCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEECCCCEEEEehHHEEECCC
Confidence            358999999998765  999999999999987 689999986 89999999999987654

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A

Probab=99.51  E-value=1.7e-14  Score=88.95  Aligned_cols=59  Identities=29%  Similarity=0.535  Sum_probs=50.4

Q ss_pred             CccEEEEEeeecCCCCCCcccCCCCEEEEEEC-------------CCC--CeeEEEE--CCeEEEEcCCcEEecCC
Q psy6450          22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDT-------------SDQ--NWWKGKC--MGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        22 ~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~-------------~~~--~w~~~~~--~g~~G~~P~~~v~~~~~   80 (139)
                      ....++|+|+|.++.++||+|++||+|.|+..             ...  +||.|++  +|+.|+||++||+.+..
T Consensus        10 ~~~~~~Alydy~a~~~~ELsf~~GD~I~V~~~~~~~l~~~~~~~~~~~~~gW~~G~~~~~g~~G~fP~nyVe~i~~   85 (90)
T 3o5z_A           10 EGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDFPGTYVEFLGP   85 (90)
T ss_dssp             SEEEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHTTCCTTGGGCHHHHCEEEEEETTTCCEEEEEGGGEEEEEE
T ss_pred             CCcEEEEeeeECCCCCCccCCcCCCEEEEEeccccccccccccccCCCCCCceEEEeCCCCCEEEeehHHEEEecc
Confidence            34569999999999999999999999999842             223  8999998  69999999999998754

>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}

Probab=99.51  E-value=2.1e-14  Score=85.22  Aligned_cols=56  Identities=32%  Similarity=0.676  Sum_probs=50.9

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE---CCeEEEEcCCcEEecCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC---MGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~---~g~~G~~P~~~v~~~~~   80 (139)
                      .+++|+|+|.++.+++|+|++||+|.|++.. ++||.|++   +|+.|+||++|++.+..
T Consensus        12 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~W~~g~~~~~~g~~G~~P~~yv~~~~~   70 (74)
T 2m0y_A           12 KYGVAFYNYDARGADELSLQIGDTVHILETY-EGWYRGYTLRKKSKKGIFPASYIHLKEA   70 (74)
T ss_dssp             SCEEECSEECCCSSSBCCEETTEEEEEEEBS-SSCEEEEESSCSSCCEEECGGGEEECCC
T ss_pred             eEEEEceeeCCCCcCcccCCCCCEEEEEEcC-CCeEEEEECCCCCCEEEEehHHEEEecc
Confidence            4599999999999999999999999999985 78999998   68999999999987653

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}

Probab=99.51  E-value=6.8e-14  Score=93.05  Aligned_cols=58  Identities=36%  Similarity=0.758  Sum_probs=53.2

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECC-CCCeeEEEECCeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTS-DQNWWKGKCMGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~   80 (139)
                      ...++|+|+|.++.+++|+|++||+|.|+++. +++||.|+..|+.|+||++||+.+..
T Consensus         5 ~~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~   63 (142)
T 2kbt_A            5 FGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYS   63 (142)
T ss_dssp             CCEEEESSCCCCSSSSBCCCCTTCEEEEEECCCSSSEEEEEETTEEEEEETTSEEESSC
T ss_pred             CeEEEECCccCCCCCCcCCCCCCCEEEEEEecCCCCeEEEEECCeeEEechHHEEEccc
Confidence            34699999999999999999999999999984 78999999999999999999998754

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B

Probab=99.50  E-value=3.1e-14  Score=91.53  Aligned_cols=56  Identities=30%  Similarity=0.456  Sum_probs=50.7

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEE-----CCCCCeeEEEEC----------CeEEEEcCCcEEec
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVID-----TSDQNWWKGKCM----------GRVGYFPSNYVIKV   78 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~-----~~~~~w~~~~~~----------g~~G~~P~~~v~~~   78 (139)
                      ...++|+|+|.++.++||+|++||+|.|+.     ..+++||.|++.          |+.|+||.+||+.+
T Consensus        44 ~~~~~Alydy~a~~~dELsf~~GDiI~Vl~~~~~~~~~~gWw~G~~~~t~~~~~~~~g~~G~fPsnyV~~l  114 (115)
T 1bb9_A           44 MFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV  114 (115)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEE
T ss_pred             ceEEEECCccCCCCCCccCcCCCCEEEEeeccCCcccCCCeEEEEeCCCcccccccCCCEEEechHHEEEC
Confidence            346999999999999999999999999999     678899999873          78999999999875

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus}

Probab=99.48  E-value=5.4e-14  Score=87.12  Aligned_cols=58  Identities=19%  Similarity=0.391  Sum_probs=52.2

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCC----CCeeEEEECCe-EEEEcCCcEEecCCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSD----QNWWKGKCMGR-VGYFPSNYVIKVQPG   81 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~----~~w~~~~~~g~-~G~~P~~~v~~~~~~   81 (139)
                      ..++|+|+|.++.++||+|++||+|.|+++.+    .+||.++..++ .|+||.+||+.+...
T Consensus        18 ~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~~~gWw~g~~~~~~~G~~P~~yv~~~~~~   80 (93)
T 1wxu_A           18 VVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILGKR   80 (93)
T ss_dssp             BCEEESSCBCCSSSSBCCBCSSCBCEECCTTTSCSCSSCEEEESSSSSCEEECSTTEEECCCB
T ss_pred             EEEEECccCCCCCCCccCcCCCCEEEEEECCCCCCCCCcEEEEeCCcCEEEEehHHEEEcCCc
Confidence            35999999999999999999999999999876    59999998766 999999999987654

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A

Probab=99.48  E-value=2.8e-14  Score=86.61  Aligned_cols=57  Identities=28%  Similarity=0.553  Sum_probs=49.6

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEEC---------------CCCCeeEEEE--CCeEEEEcCCcEEecCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDT---------------SDQNWWKGKC--MGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~---------------~~~~w~~~~~--~g~~G~~P~~~v~~~~~   80 (139)
                      ..++|+|+|.++.+++|+|++||+|.|+..               .+.+||.|++  +|+.|+||.+||+.+..
T Consensus         6 ~~~~Alydy~~~~~~eLs~~~Gd~I~V~~~~~~~~~~~~~~e~~~~~~gW~~g~~~~~g~~G~fP~~yV~~~~~   79 (83)
T 3i5r_A            6 YQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIGR   79 (83)
T ss_dssp             EEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHHTCTTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEEE
T ss_pred             cEEEEccccCCCCCCccccCCCCEEEEeeccccccccccccccCCCCCccEEEEeCCCCCEEEEehHHEEECCc
Confidence            458999999999999999999999999953               2348999987  58999999999987654

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A

Probab=99.47  E-value=1.2e-14  Score=92.45  Aligned_cols=56  Identities=30%  Similarity=0.583  Sum_probs=50.5

Q ss_pred             EEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeE---EEEcCCcEEecCC
Q psy6450          25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRV---GYFPSNYVIKVQP   80 (139)
Q Consensus        25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~---G~~P~~~v~~~~~   80 (139)
                      +++|+|+|.++.++||+|++||+|.|+++.+++||.++..|+.   |+||++||+.+..
T Consensus         7 ~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~g~~g~~G~fPsnYV~~~~~   65 (108)
T 2rqv_A            7 YAIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIIDI   65 (108)
T ss_dssp             CEEESSCCCCCSSSBCCCCSSEEECCCCEETTTEEEECCSSSSCCCEEEESTTCBCCCS
T ss_pred             EEEECCCcCCCCCCcCCcCCCCEEEEeEecCCCEEEEEECCccCCeeEeecceEEEecC
Confidence            4899999999999999999999999998888899999986555   9999999987654

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A

Probab=99.46  E-value=1.8e-15  Score=89.33  Aligned_cols=57  Identities=26%  Similarity=0.642  Sum_probs=51.8

Q ss_pred             EEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEE-EEcCCcEEecCCC
Q psy6450          25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVG-YFPSNYVIKVQPG   81 (139)
Q Consensus        25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G-~~P~~~v~~~~~~   81 (139)
                      .++|+|+|.++.+++|+|++||+|.|+++.+++||.++..++.| +||++|++.+...
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~gG~~P~~yv~~~~~~   65 (71)
T 1hsq_A            8 AVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVNP   65 (71)
T ss_dssp             CCCCSSCCCCSSSSSCCCCTTCCCBSCCCBTTTEECCBCSSSCSCCEETTTCCSCSCC
T ss_pred             EEEECCCCCcCCCCccCCCCCCEEEEEEecCCCEEEEEECCeEEeEEChHHcEECCCc
Confidence            48999999999999999999999999998888999999987776 9999999877653

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}

Probab=99.45  E-value=8.7e-14  Score=90.06  Aligned_cols=57  Identities=33%  Similarity=0.630  Sum_probs=52.0

Q ss_pred             EEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE---CCeEEEEcCCcEEecCCC
Q psy6450          25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC---MGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~---~g~~G~~P~~~v~~~~~~   81 (139)
                      +++|+|+|.++.++||+|++||+|.|+++.+++||.++.   .|+.|+||++||+.+...
T Consensus         5 ~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~~~~g~~G~~P~nyv~~~~~~   64 (120)
T 2kym_A            5 FAVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRIIDLM   64 (120)
T ss_dssp             EEEECSCBCCCSTTCCCBCTTCEEEEEEEETTTEEEEEESSSCSCCCCEEGGGEEEECSS
T ss_pred             EEEEcccCCCCCCCccCCCCCCEEEEEEecCCCEEEEEECCCCCCEEEEchHHEEEccCC
Confidence            589999999999999999999999999988889999986   578899999999987543

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.45  E-value=2.9e-14  Score=112.55  Aligned_cols=56  Identities=34%  Similarity=0.861  Sum_probs=52.4

Q ss_pred             EEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEecCC
Q psy6450          25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~   80 (139)
                      .++|+|||.++.++||+|++||+|.|++..+++||.++.  +|++|+||++||+....
T Consensus        87 ~~~alyd~~~~~~~el~~~~gd~i~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~~~~  144 (535)
T 2h8h_A           87 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDS  144 (535)
T ss_dssp             CEEESSCBCCCSSSBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEETTS
T ss_pred             EEEEccccCCcCCCcCCcCCCCEEEEEEecCCCceEEEECCCCcceEecchhhccccc
Confidence            489999999999999999999999999998899999999  79999999999998543

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1

Probab=99.44  E-value=6.8e-13  Score=76.37  Aligned_cols=57  Identities=26%  Similarity=0.606  Sum_probs=49.0

Q ss_pred             CCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCCC--ccceeccccc
Q psy6450          36 HADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE--RPLQVTHNLQ   92 (139)
Q Consensus        36 ~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~--~~~~~~~~~~   92 (139)
                      .++||+|++||+|.|++..+++||.++.+|+.|+||++|++.+....  ....+.++|.
T Consensus         2 ~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~~~~~~alydy~   60 (63)
T 1tuc_A            2 GPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKELVLALYDYQ   60 (63)
T ss_dssp             CCCCCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECSCSTTSCEEEECSCBC
T ss_pred             CccccCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEcCCCCCCccEEEecccc
Confidence            57899999999999999988999999999999999999999886543  3456777775

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A

Probab=99.42  E-value=2.5e-13  Score=76.61  Aligned_cols=55  Identities=13%  Similarity=0.301  Sum_probs=47.3

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..++.++|. +..+++|++.+||+|.+.....+|||.+++.+|+.|+||++||+.+
T Consensus         3 ~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   57 (57)
T 1cka_A            3 YVRALFDFN-GNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY   57 (57)
T ss_dssp             EEEESSCBC-CSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEC-
T ss_pred             EEEECCcCC-CCCCCCCCCCCCCEEEEEEecCCCcEEEEeCCCCEEEEeHHHEEEC
Confidence            356788885 7788899999999998777777999999988899999999999875

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}

Probab=99.42  E-value=3.2e-13  Score=79.93  Aligned_cols=68  Identities=10%  Similarity=0.219  Sum_probs=49.1

Q ss_pred             EEEcCCcEEecCCCCccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          68 GYFPSNYVIKVQPGERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        68 G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ||++..+..  .......++.++|. ++.+++|+|.+||+|.+.....+|||.++. +|+.|+||++||+.+
T Consensus         1 g~~~~~~~~--~~~~~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~-~g~~G~~P~~yv~~~   68 (73)
T 3c0c_A            1 GAMDPEFMP--PLDQPSCKALYDFE-PENDGELGFREGDLITLTNQIDENWYEGML-HGQSGFFPLSYVQVL   68 (73)
T ss_dssp             -----------CCCSCEEEESSCBC-CSSTTBCCBCTTCEEEEEEECSSSEEEEEE-TTEEEEEEGGGEEEE
T ss_pred             CCCCcccCC--CCCCeEEEECccCC-CCCCCCccCcCCCEEEEEEecCCCEEEEEE-CCCEEEeChHHEEEC
Confidence            455555443  22234678899996 788889999999999887777899999987 679999999999864

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.42  E-value=3.2e-13  Score=95.11  Aligned_cols=55  Identities=31%  Similarity=0.468  Sum_probs=50.4

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEE-----CCCCCeeEEEE----------CCeEEEEcCCcEEec
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVID-----TSDQNWWKGKC----------MGRVGYFPSNYVIKV   78 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~-----~~~~~w~~~~~----------~g~~G~~P~~~v~~~   78 (139)
                      ..++|||+|.++..+||+|++||+|.|+.     ..+.+||+|++          +|+.||||.+||+.+
T Consensus       143 ~~~rALYdY~a~~~dELSf~~GDiI~Vl~~~~~~~~ddgWw~G~~~~t~~~~~d~~G~~G~FPsnYVe~l  212 (213)
T 1mv3_A          143 FKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPENFTERV  212 (213)
T ss_dssp             EEEEESSCBCCCSTTCCCBCSSCEEEECCCSCGGGSCTTEEEEEEHHHHHTGGGGGGTCEEEESTTEEEE
T ss_pred             eEEEECCCcCCCCCCcCCcCCCCEEEEeecCCCCccCCCeeEEEeCCcccccccCCCCEEEecHHHeEEC
Confidence            46999999999999999999999999999     67889999997          388999999999865

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A

Probab=99.41  E-value=1e-12  Score=77.03  Aligned_cols=46  Identities=33%  Similarity=0.681  Sum_probs=39.4

Q ss_pred             CCCCCCcccCCCCEEEEEEC-CCCCeeEEEE--CCeEEEEcCCcEEecC
Q psy6450          34 SRHADELDLKPGYKVTVIDT-SDQNWWKGKC--MGRVGYFPSNYVIKVQ   79 (139)
Q Consensus        34 ~~~~~eLs~~~gd~i~v~~~-~~~~w~~~~~--~g~~G~~P~~~v~~~~   79 (139)
                      ++..+||+|++||+|.|++. .+.+||+|++  +|+.|+||++||+.+.
T Consensus        21 ~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~~   69 (70)
T 1gcq_C           21 GAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPYV   69 (70)
T ss_dssp             GGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEECC
T ss_pred             CCCCCcCCcCCCCEEEEEeCCCCCCCeEEEeCCCCCEeEeehHHeEECC
Confidence            33445999999999999998 5789999975  8999999999998753

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=99.41  E-value=1.5e-12  Score=90.69  Aligned_cols=58  Identities=29%  Similarity=0.509  Sum_probs=54.2

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   80 (139)
                      ...++|+|+|.++.++||+|.+||+|.|++..+++||.++.+|+.||||.+||+.+..
T Consensus        81 ~~~~~al~dy~a~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~  138 (193)
T 1ng2_A           81 GEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQ  138 (193)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEETTS
T ss_pred             ceeeeeccccCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCEEEEehHHeEECCC
Confidence            4568999999999999999999999999999888999999999999999999998764

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.41  E-value=5.8e-13  Score=77.50  Aligned_cols=55  Identities=20%  Similarity=0.160  Sum_probs=48.4

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..++.++|. +..+++|+|.+||+|.+.....+|||.++..+|+.|+||++||+.+
T Consensus         4 ~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   58 (67)
T 1gl5_A            4 IVVAMYDFQ-ATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGK   58 (67)
T ss_dssp             CEEECSCBC-CSSSSBCCBCTTCEEEEEECSSSSEEEEECSSSCEEEEETTSEESS
T ss_pred             EEEECccCC-CCCCCeecCCcCCEEEEEEccCCCcEEEEECCCCEEEEEhHhEEEc
Confidence            567889996 7788899999999998887778999999977889999999999864

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}

Probab=99.40  E-value=5.5e-13  Score=75.94  Aligned_cols=55  Identities=20%  Similarity=0.292  Sum_probs=47.7

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. ++.+++|+|.+||+|.+.....+|||.++. +++.|+||++||+.|
T Consensus         6 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~~P~~yv~~l   60 (60)
T 2xmf_A            6 PQCKALYAYD-AQDTDELSFNANDIIDIIKEDPSGWWTGRL-RGKQGLFPNNYVTKI   60 (60)
T ss_dssp             CEEEESSCBC-CSSTTBCCBCTTCEEEEEEECTTSEEEEEE-TTEEEEEEGGGEEEC
T ss_pred             cEEEECccCC-cCCcCCcCCCCCCEEEEEEecCCCEEEEEE-CCEEEEEcHHHEEEC
Confidence            3567889996 778889999999999777777799999998 679999999999975

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1

Probab=99.40  E-value=5.7e-13  Score=77.18  Aligned_cols=55  Identities=13%  Similarity=0.301  Sum_probs=48.2

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..++.++|. ++.+++|+|.+||+|.+....++|||.++..+|+.|+||++||+.+
T Consensus         5 ~~~Alydy~-~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   59 (65)
T 1b07_A            5 YVRALFDFN-GNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY   59 (65)
T ss_dssp             EEEESSCBC-CSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEEC
T ss_pred             EEEECCcCC-CCCCCccCCcCCCEEEEEEecCCCeEEEEECCCCEEEEChHHEeec
Confidence            467888996 7788899999999998777777999999977889999999999864

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A

Probab=99.40  E-value=6.1e-13  Score=75.50  Aligned_cols=55  Identities=22%  Similarity=0.328  Sum_probs=47.4

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. ++.+++|+|.+||+|.+.....+|||.++. +++.|+||++||+.|
T Consensus         5 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~~P~~yv~~l   59 (59)
T 2g6f_X            5 SVVRAKFNFQ-QTNEDELSFSKGDVIHVTRVEEGGWWEGTH-NGRTGWFPSNYVREI   59 (59)
T ss_dssp             CEEEESSCBC-CSSTTBCCBCTTCEEEEEEECTTSEEEEEE-TTEEEEEEGGGEEEC
T ss_pred             cEEEECceeC-CCCcCCcCCCCCCEEEEEEecCCCEEEEEE-CCcEEEEeHHHEEEC
Confidence            3567888996 778889999999999777777799999987 669999999999976

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A

Probab=99.40  E-value=6.2e-13  Score=75.22  Aligned_cols=55  Identities=15%  Similarity=0.180  Sum_probs=47.6

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeC-CCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNG-ENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~-~~~~G~~P~~~v~~~  139 (139)
                      ..++.++|. ++.+++|+|.+||+|.+.....+|||.++.. +|+.|+||++||+.+
T Consensus         2 ~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   57 (58)
T 1jo8_A            2 WATAEYDYD-AAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG   57 (58)
T ss_dssp             CEEESSCBC-CCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EEEECceEC-CCCCCCcccCCCCEEEEEEecCCCcEEEEECCCCCEEEechHHeEEC
Confidence            467888996 7788899999999998887778999999987 379999999999875

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*

Probab=99.40  E-value=6.2e-13  Score=76.21  Aligned_cols=56  Identities=21%  Similarity=0.168  Sum_probs=48.3

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEe-CCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRN-GENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~-~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. ++.+++|+|.+||+|.+.....+|||.+++ .+|+.|+||++||+.+
T Consensus         4 ~~~~al~~y~-~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~fP~~yv~~~   60 (62)
T 2fpe_A            4 QTHRAIFRFV-PRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEV   60 (62)
T ss_dssp             CCEEECSCBC-CSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CEEEECccCC-ccCcCcCcCCCCCEEEEEEecCCCEEEEEECCCCCEEEechHHEEEC
Confidence            3567889996 788889999999999777777799999986 6789999999999975

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}

Probab=99.40  E-value=5.9e-13  Score=75.29  Aligned_cols=54  Identities=22%  Similarity=0.348  Sum_probs=46.7

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..++.++|. ++.+++|+|.+||+|.+.....+|||.++. +|+.|+||++||+.+
T Consensus         3 ~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~~P~~yv~~~   56 (58)
T 2bz8_A            3 EAIVEFDYQ-AQHDDELTISVGEIITNIRKEDGGWWEGQI-NGRRGLFPDNFVREI   56 (58)
T ss_dssp             CEEESSCBC-CCSTTBCCBCTTCEEEEEECCTTTEEEEEE-TTEEEEEEGGGEEEC
T ss_pred             EEEECcccC-CCCcCEeeECCCCEEEEEEeCCCCEEEEEE-CCeEEEEehHHeEEc
Confidence            356788885 778889999999999877777799999988 669999999999975

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=99.39  E-value=5.9e-13  Score=93.98  Aligned_cols=58  Identities=40%  Similarity=0.865  Sum_probs=54.1

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   80 (139)
                      ...++|+|+|.++.+++|+|++||+|.|+++.+++||.|+.+|+.|+||++||+.+..
T Consensus       158 ~~~~~al~~y~~~~~~eL~~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~  215 (217)
T 1gri_A          158 PTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNR  215 (217)
T ss_dssp             CCEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEECSSCEEEEEGGGEEEECC
T ss_pred             ceEEEecCCccCCCCCcCCCCCCCEEEEEEeCCCCeEEEEECCeEEEEeHHHeEECCC
Confidence            4569999999999999999999999999999888999999999999999999998753

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A

Probab=99.39  E-value=7.3e-13  Score=74.87  Aligned_cols=54  Identities=15%  Similarity=0.263  Sum_probs=47.4

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..++.++|. ++.+++|++.+||+|.+.....+|||.++. +++.|+||++||+.|
T Consensus         5 ~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~-~g~~G~~P~~yv~~l   58 (58)
T 2drm_A            5 QVKALYDYD-AQTGDELTFKEGDTIIVHQKDPAGWWEGEL-NGKRGWVPANYVQDI   58 (58)
T ss_dssp             EEEESSCBC-CCSTTBCCBCTTCEEEEEECCTTSEEEEEE-TTEEEEEEGGGEEEC
T ss_pred             EEEECccCC-CCCcCCcCCCCCCEEEEEEecCCCEEEEEE-CCcEEEEeHHHEEEC
Confidence            467888996 778889999999999877777899999998 679999999999975

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A

Probab=99.39  E-value=9.4e-13  Score=77.41  Aligned_cols=56  Identities=14%  Similarity=0.188  Sum_probs=48.3

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcc--eeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGD--EVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~--~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..+++.++|. +..+++|+|.+||+|.+...  ..+|||.+++.+|+.|+||++||+.+
T Consensus         7 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   64 (71)
T 1u5s_A            7 HVVQTLYPFS-SVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVL   64 (71)
T ss_dssp             SEEEESSCCC-CCSSSBCCCCSSCCEEEEECCCTTTCEEEEEETTTEEEEEETTSEEEC
T ss_pred             EEEEEcccCC-CCCCCcccCCCCCEEEEEECCCCCCCCEEEEeCCCCEEEEeHHHEEEC
Confidence            3577889996 77888999999999977666  67899999988889999999999975

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.39  E-value=1.5e-12  Score=77.98  Aligned_cols=53  Identities=30%  Similarity=0.615  Sum_probs=43.4

Q ss_pred             EEEeeecCCC---CCCcccCCCCEEEEEECC-CCCeeEEEE--CCeEEEEcCCcEEecC
Q psy6450          27 VVLYNFKSRH---ADELDLKPGYKVTVIDTS-DQNWWKGKC--MGRVGYFPSNYVIKVQ   79 (139)
Q Consensus        27 ~al~~~~~~~---~~eLs~~~gd~i~v~~~~-~~~w~~~~~--~g~~G~~P~~~v~~~~   79 (139)
                      .++|+|.++.   .++|+|++||+|.|++.. +++||+|++  +|+.|+||++||+.+.
T Consensus        19 ~a~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~nyV~~~~   77 (78)
T 1k1z_A           19 QEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPYV   77 (78)
T ss_dssp             SCBSSCSCCSSSSCCCCCBCTTCEEEEEECCSSCSCEEEEETTTTEEEEECSTTEEESC
T ss_pred             EECCCCCCCCCCCCCccCCCCCCEEEEEEcCCCCCeEEEEECCCCCEEEEehHHeEECC
Confidence            3445555532   599999999999999985 889999996  7999999999998753

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.38  E-value=5.5e-13  Score=78.11  Aligned_cols=55  Identities=9%  Similarity=0.234  Sum_probs=46.5

Q ss_pred             cceeccccccccCCC-ceeeecCcEEEEEccee-----CCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGES-GLSLLRDQIVIQIGDEV-----DGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~-~l~~~~g~~v~~~~~~~-----~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      .+++.++|. ++.++ +|+|.+||+|.+....+     +|||.++..+|+.|+||++||+.|
T Consensus         9 ~~~aly~y~-a~~~~dELsf~~Gd~i~Vl~~~~~~~~~~gWW~g~~~~G~~G~~PsnyV~~l   69 (69)
T 1nm7_A            9 FARALYDFV-PENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   69 (69)
T ss_dssp             CEEECSCCC-CSSTTSCCCCCTTCEEEECCSSSSSCCSSSCEEEEETTTEEEEECGGGEEEC
T ss_pred             EEEEEeccc-CCCCCCccCCCCCCEEEEEecCCCCCCCCCeeEEEeCCCCEEEecHHHEEEC
Confidence            467889996 66666 99999999997776654     599999997889999999999975

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A

Probab=99.38  E-value=9.1e-13  Score=74.98  Aligned_cols=55  Identities=13%  Similarity=0.259  Sum_probs=46.7

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcce--eCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDE--VDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~--~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. ++.+++|+|.+||+|.+....  .+|||.++. +|+.|+||++||+.|
T Consensus         4 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~-~g~~G~~P~~yv~~l   60 (60)
T 1oot_A            4 PKAVALYSFA-GEESGDLPFRKGDVITILKKSDSQNDWWTGRV-NGREGIFPANYVELV   60 (60)
T ss_dssp             CEEEESSCBC-CCSTTBCCBCTTCEEEEEECCSCTTSEEEEEE-TTEEEEEEGGGEEEC
T ss_pred             cEEEECccCC-cCCcCEeeEcCCCEEEEEEeCCCCCCeEEEEE-CCEEEEEeHHHEEEC
Confidence            3567888996 778889999999999776654  689999998 669999999999975

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A

Probab=99.38  E-value=9.8e-13  Score=96.05  Aligned_cols=58  Identities=34%  Similarity=0.763  Sum_probs=54.0

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      ..++|+|+|.++.+++|+|++||+|.|++..+++||.|+.+|+.|+||++|++.+...
T Consensus         3 ~~~~a~~~~~~~~~~el~~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   60 (283)
T 3jv3_A            3 CQVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDM   60 (283)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEECCSTTEEEEEETTEEEEEEGGGEEEGGGS
T ss_pred             eEEEEccccCCCCCCcCCCCCCCEEEEEecCCCCEEEEEECCCCCcCCCccccccCcc
Confidence            4689999999999999999999999999998899999999999999999999987653

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A

Probab=99.38  E-value=9.7e-13  Score=74.37  Aligned_cols=54  Identities=17%  Similarity=0.196  Sum_probs=46.6

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..++.++|. ++.+++|++.+||+|.+.....+|||.++. +|+.|+||++||+.+
T Consensus         3 ~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~~P~~yv~~~   56 (58)
T 1uti_A            3 WARALYDFE-ALEEDELGFRSGEVVEVLDSSNPSWWTGRL-HNKLGLFPANYVAPM   56 (58)
T ss_dssp             EEEESSCBC-CCSTTBCCBCTTCEEEEEECCSSSEEEEEE-TTEEEEEEGGGEEEC
T ss_pred             EEEECccCC-CCCcCCCCCCCCCEEEEEEECCCCEEEEEE-CCeEEEeeHHHeEEc
Confidence            356788886 777889999999999887777899999998 679999999999875

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=4.6e-13  Score=80.25  Aligned_cols=54  Identities=20%  Similarity=0.266  Sum_probs=47.0

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..++.++|. +..+++|+|.+||+|.+.....+|||.++. +|+.|+||++||+.+
T Consensus        19 ~~~al~dy~-~~~~~eLsf~~Gd~i~v~~~~~~gWw~g~~-~g~~G~~P~~yv~~~   72 (78)
T 2ed0_A           19 KVVAIYDYT-KDKEDELSFQEGAIIYVIKKNDDGWYEGVM-NGVTGLFPGNYVESI   72 (78)
T ss_dssp             EEEECSCBC-CSSTTBCCBCSSCEEEEEEECSSSEEEEEE-TTEEEEEETTSEEEC
T ss_pred             EEEECccCC-ccCcCcccccCCCEEEEEEeCCCCEEEEEE-CCcEEEeChHHEEEc
Confidence            467889996 778889999999999877777899999995 679999999999975

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=5.2e-13  Score=81.30  Aligned_cols=71  Identities=17%  Similarity=0.189  Sum_probs=54.7

Q ss_pred             EEEcCCcEEecC-CCCccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          68 GYFPSNYVIKVQ-PGERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        68 G~~P~~~v~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      |.+|........ .....+++.++|. +..+++|+|.+||+|.+.....+|||.++..+|+.|+||++||+.+
T Consensus         4 gs~P~~~~~p~~~~~~~~~~alydy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~~   75 (85)
T 2yuq_A            4 GSSGEDNRRPLWEPEETVVIALYDYQ-TNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEK   75 (85)
T ss_dssp             SSCCCCCCCCSSCSSSCEEEESSCCC-CSCSSBCCCCBTEEEEEEECCSSSEEEEECSSSCEEEEETTTCEEC
T ss_pred             CCCCCCCCCCCCCCCCeEEEECcCCC-CCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCEEEEehHHeEEc
Confidence            344554443321 2233578889996 7888899999999998777777899999988889999999999863

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A

Probab=99.38  E-value=1e-12  Score=74.24  Aligned_cols=54  Identities=13%  Similarity=0.230  Sum_probs=47.1

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..++.++|. +..+++|+|.+||+|.+.....+|||.++. +++.|+||++||+.+
T Consensus         4 ~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~~P~~yv~~~   57 (58)
T 2vwf_A            4 YVQALFDFD-PQEDGELGFRRGDFIHVMDNSDPNWWKGAC-HGQTGMFPRNYVTAV   57 (58)
T ss_dssp             EEEESSCBC-CCSTTBCCBCTTCEEEEEECCSSSEEEEEE-TTEEEEEEGGGEEEC
T ss_pred             EEEECceEC-CCCcCCcCCCCCCEEEEEEcCCCCEEEEEE-CCcEEEEchHHeEEC
Confidence            467888886 777889999999999887777899999999 779999999999975

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}

Probab=99.38  E-value=1.2e-12  Score=74.21  Aligned_cols=55  Identities=15%  Similarity=0.302  Sum_probs=48.1

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCC-CeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGE-NRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~-~~~G~~P~~~v~~~  139 (139)
                      ..++.++|. +..+++|++.+||+|.+.....+|||.++..+ |+.|+||++||+.|
T Consensus         3 ~~~al~d~~-~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~   58 (59)
T 1yn8_A            3 RAVALYDFE-PENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYI   58 (59)
T ss_dssp             EEEECSCBC-CCSTTBCCBCTTCEEEEEEEEETTEEEEECTTSSCEEEEEGGGEEEC
T ss_pred             EEEECccCC-CCCCCCcCCCCCCEEEEEEcCCCCeEEEEECCCCCEEEEehHHeEEC
Confidence            467888995 77888999999999988888889999999875 79999999999975

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}

Probab=99.38  E-value=7.5e-13  Score=90.67  Aligned_cols=55  Identities=24%  Similarity=0.694  Sum_probs=51.2

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEe
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIK   77 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~   77 (139)
                      ...++|+|+|.++.++||+|++||+|.|+++.+++||.|+. +|+.|+||++||+.
T Consensus       118 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~nyv~~  173 (174)
T 3qwx_X          118 IEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQI  173 (174)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEECTTCCEEEEEGGGEEE
T ss_pred             ccEEEEecCcccCCCCccccccCCEEEEEEccCCCeEEEEECCCCEEEEChHHEEe
Confidence            45699999999999999999999999999998899999996 99999999999974

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A

Probab=99.38  E-value=1e-12  Score=74.33  Aligned_cols=54  Identities=13%  Similarity=0.176  Sum_probs=46.8

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..++.++|. ++.+++|++.+||+|.+.....+|||.++. +|+.|+||++||+.+
T Consensus         4 ~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~~P~~yv~~~   57 (58)
T 1zx6_A            4 YVEALYQFD-PQQDGDLGLKPGDKVQLLEKLSPEWYKGSC-NGRTGIFPANYVKPA   57 (58)
T ss_dssp             EEEECSCBC-CCSTTBCCBCTTCEEEEEEECSSSEEEEEE-TTEEEEEEGGGEEEC
T ss_pred             EEEECceEC-CCCCCCccCCCCCEEEEEEecCCCEEEEEE-CCcEEEeeHHHEEEc
Confidence            467888996 778889999999999877777799999997 679999999999975

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A

Probab=99.37  E-value=7.3e-13  Score=77.20  Aligned_cols=55  Identities=18%  Similarity=0.318  Sum_probs=46.9

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. ++.+++|+|.+||+|.+... .+|||.+++.+|+.|+||++||+.+
T Consensus         5 ~~~~Alydy~-a~~~~ELsf~~Gd~i~vl~~-~~~Ww~~~~~~g~~G~~Psnyv~~~   59 (67)
T 2b86_A            5 VIVIAKWDYT-AQQDQELDIKKNERLWLLDD-SKTWWRVRNAANRTGYVPSNYVERK   59 (67)
T ss_dssp             EEEEESSCBC-CSSTTSCCBCTTCEEEEEEC-SSSSCEEECTTSCEEECCCCSEEEC
T ss_pred             eEEEEeeeEC-CCCCCccccCCCCEEEEEec-CCCeEEEEeCCCCEEEeChHHEeEc
Confidence            3567889996 77888999999999976665 3899999988889999999999864

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}

Probab=99.37  E-value=1.2e-12  Score=76.37  Aligned_cols=56  Identities=18%  Similarity=0.395  Sum_probs=49.0

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. +..+++|+|.+||+|.+.....+|||.+++.+|+.|+||++||+.+
T Consensus        11 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   66 (68)
T 1s1n_A           11 EEYIAVGDFT-AQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEPY   66 (68)
T ss_dssp             EEEEECSCBC-CSSSSCCCBCSSEEEEECSCCSSSEEEEECSSSCEEEEESTTEEEC
T ss_pred             CEEEEcccCC-CCCCCcCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEehHHeEEC
Confidence            3567888995 7788899999999998888878899999977889999999999875

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A

Probab=99.37  E-value=8.6e-13  Score=75.11  Aligned_cols=54  Identities=20%  Similarity=0.294  Sum_probs=47.1

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..++.++|. +..+++|+|.+||+|.+... .+|||.+++.+|+.|+||++||+.+
T Consensus         3 ~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~g~~G~~P~~yv~~~   56 (60)
T 1i07_A            3 YAKSKYDFV-ARNSSELSVMKDDVLEILDD-RRQWWKVRNASGDSGFVPNNILDIM   56 (60)
T ss_dssp             EEEESSCBC-CSSTTBCCBCTTCEEEECGG-GCCEEEEECTTSCEEEEEGGGEEEE
T ss_pred             EEEECccCC-CCCCCcccCCCCCEEEEEEc-CCCeEEEEECCCCEEEEEHHHeEEc
Confidence            356788886 77888999999999987777 8999999988899999999999864

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A

Probab=99.37  E-value=1.3e-12  Score=74.35  Aligned_cols=54  Identities=7%  Similarity=0.209  Sum_probs=46.8

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..++.++|. ++.+++|++.+||+|.+.....+|||.++. +|+.|+||++||+.+
T Consensus         6 ~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~-~g~~G~~P~~yv~~l   59 (60)
T 1w70_A            6 RAEALFDFT-GNSKLELNFKAGDVIFLLSRINKDWLEGTV-RGATGIFPLSFVKIL   59 (60)
T ss_dssp             EEEESSCBC-CSSTTBCCBCTTCEEEEEEECSSSEEEEEE-TTEEEEEEGGGEEEC
T ss_pred             EEEECccCC-cCCCCCccCCCCCEEEEEEeCCCCeEEEEE-CCCEEEechHHEEEC
Confidence            467888995 778889999999999877777899999986 569999999999975

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A

Probab=99.37  E-value=1.5e-12  Score=73.58  Aligned_cols=54  Identities=17%  Similarity=0.271  Sum_probs=46.9

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..++.++|. +..+++|+|.+||+|.+.....+|||.++. +|+.|+||++||+.+
T Consensus         4 ~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~~P~~yv~~~   57 (58)
T 1sem_A            4 FVQALFDFN-PQESGELAFKRGDVITLINKDDPNWWEGQL-NNRRGIFPSNYVCPY   57 (58)
T ss_dssp             EEEESSCBC-CSSTTBCCBCTTCEEEEEECSSSSEEEEEE-TTEEEEEEGGGEEEC
T ss_pred             EEEECcCCC-CCCCCCcCCCCCCEEEEEEecCCCEEEEEE-CCcEEEechHHeEEC
Confidence            467888996 777889999999999887777789999998 569999999999875

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.37  E-value=3.7e-13  Score=104.10  Aligned_cols=58  Identities=33%  Similarity=0.593  Sum_probs=52.4

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEEC-CCCCeeEEEEC-CeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDT-SDQNWWKGKCM-GRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~-~~~~w~~~~~~-g~~G~~P~~~v~~~~~   80 (139)
                      ...++|+|+|.++.++||+|++||++.|++. .+++||.++.. |++|+||++||++...
T Consensus        11 ~~~~~aly~~~~~~~~el~~~~gd~i~v~~~~~~~~ww~~~~~~g~~G~~P~~yv~~~~~   70 (450)
T 1k9a_A           11 GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREG   70 (450)
T ss_dssp             TCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECTTCCEEEEEGGGEEECCC
T ss_pred             CCEEEECCCcCccCCCcCCCCCCCEEEEeeccCCCCceEEEECCCceeeechhccccccc
Confidence            4469999999999999999999999999997 57799999995 9999999999997654

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.37  E-value=1.2e-12  Score=77.05  Aligned_cols=55  Identities=16%  Similarity=0.316  Sum_probs=47.2

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEc-ceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIG-DEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~-~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..++.++|. +..+++|+|.+||+|.+.. ...+|||.+++.+|+.|+||++||+.+
T Consensus        13 ~~~alydy~-~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   68 (71)
T 1csk_A           13 ECIAKYNFH-GTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKR   68 (71)
T ss_dssp             EEEESSCBC-CSSTTBCCBCTTCEEEEEEECSSTTEEEEECTTSCEEEEETTSEEC-
T ss_pred             EEEEceeEC-cCCCCcCCCCCCCEEEEeECCCCCCCEEEEeCCCCEEEEehHHeEEc
Confidence            467889996 7788899999999997766 677999999977889999999999863

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}

Probab=99.36  E-value=1.5e-12  Score=77.09  Aligned_cols=55  Identities=15%  Similarity=0.296  Sum_probs=48.1

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeC-CCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNG-ENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~-~~~~G~~P~~~v~~~  139 (139)
                      ..++.++|. ++.+++|+|.+||+|.+..+..+|||.++.. +|+.|+||++||+.+
T Consensus         7 ~~~Alydy~-a~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~~yv~~~   62 (73)
T 2lcs_A            7 RAVALYDFE-PENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYI   62 (73)
T ss_dssp             EEEESSCBC-CSSTTBCCBCTTCEEEEEEEETTTEEEEECTTSSCEEEEESTTEEEC
T ss_pred             EEEECccCC-CCCCCccCCcCCCEEEEEEEcCCCEEEEEECCCCCEEEeeHHHEEEC
Confidence            577889996 7788899999999998888888999999987 479999999999974

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A

Probab=99.36  E-value=1.5e-12  Score=76.00  Aligned_cols=55  Identities=18%  Similarity=0.274  Sum_probs=47.3

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. ++.+++|+|.+||+|.+.... +|||.++..+|+.|+||++||+.+
T Consensus         9 ~~~~alydy~-~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~~g~~G~~P~~yv~~~   63 (68)
T 2k2m_A            9 KWVLCNYDFQ-ARNSSELSVKQRDVLEVLDDS-RKWWKVRDPAGQEGYVPYNILTPY   63 (68)
T ss_dssp             CEEEESSCBC-CCSSSBCCBCTTCEEEEEECS-SSEEEEECTTSCCEEEEGGGEEEC
T ss_pred             EEEEECccCC-CCCCCcccCCCCCEEEEEEcC-CCeEEEEeCCCCEEEEEhhhEEEc
Confidence            3577889996 778889999999999766664 899999988889999999999874

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=2.7e-12  Score=75.67  Aligned_cols=55  Identities=13%  Similarity=0.126  Sum_probs=47.9

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..+++.++|. ++..++|+|.+||+|.+.....+|||.++. +|+.|+||++||+.+
T Consensus        10 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~~P~~yv~~~   64 (72)
T 2dl8_A           10 IEAIAKFDYV-GRTARELSFKKGASLLLYQRASDDWWEGRH-NGIDGLIPHQYIVVQ   64 (72)
T ss_dssp             EEEEESSCBC-CSSSSBCCBCTTCEEEEEEEEETTEEEEEE-TTEEEEECSSSEEEC
T ss_pred             EEEEECccCC-cCCCCEeccCCCCEEEEEeecCCCEEEEEE-CCEEEEEchHHeEEc
Confidence            3577889996 778889999999999888877899999998 679999999999864

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}

Probab=99.36  E-value=1.6e-12  Score=76.52  Aligned_cols=56  Identities=21%  Similarity=0.168  Sum_probs=48.3

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEe-CCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRN-GENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~-~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. ++.+++|+|.+||+|.+.....+|||.+++ .+|+.|+||++||+.+
T Consensus         7 ~~~~al~~y~-~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~fP~~yv~~~   63 (71)
T 2fpf_A            7 QTHRAIFRFV-PRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEV   63 (71)
T ss_dssp             CCEEECSCBC-CSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             eEEEECeeEC-ccCCCcccCcCCcEEEEeEecCCCEEEEEECCCCCEEEeehHHEEEC
Confidence            3577889996 788889999999999777777799999986 6789999999999874

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D

Probab=99.36  E-value=1.1e-12  Score=74.60  Aligned_cols=55  Identities=16%  Similarity=0.338  Sum_probs=45.9

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEccee-CCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEV-DGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~-~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..++.++|. ++.+++|+|.+||+|.+..... +|||.++..+|+.|+||++||+.|
T Consensus         5 ~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~g~~G~~P~~yv~~l   60 (60)
T 2x3w_D            5 RVRALYDYD-GQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI   60 (60)
T ss_dssp             EEEECSCBC-CSSSSBCCBCTTCEEEECSCCCSSSEEEEECSSCCEEEEEGGGEEC-
T ss_pred             EEEECcccC-ccCCCcccCCCCCEEEEEEccCCCCceEEEeCCCCEEEecHHHEEEC
Confidence            467888996 7788899999999997766543 599999987689999999999975

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}

Probab=99.36  E-value=1.5e-12  Score=76.05  Aligned_cols=54  Identities=9%  Similarity=0.171  Sum_probs=46.9

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..++.++|. ++.+++|+|.+||+|.+....++|||.++. +|+.|+||++||+.+
T Consensus         5 ~~~Alydy~-~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~~P~~yv~~~   58 (68)
T 2ew3_A            5 CCRGLYDFE-PENQGELGFKEGDIITLTNQIDENWYEGMI-HGESGFFPINYVEVI   58 (68)
T ss_dssp             EEEESSCBC-CCSTTBCCBCTTCEEEEEEESSSSEEEEEE-TTEEEEEEGGGEEES
T ss_pred             EEEEeeeEC-CCCCCccCCCCCCEEEEEEecCCCEEEEEE-CCcEEEeeHHHEEEc
Confidence            567889996 778889999999999877777899999987 679999999999864

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A

Probab=99.35  E-value=1.9e-12  Score=74.57  Aligned_cols=55  Identities=22%  Similarity=0.315  Sum_probs=47.4

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. +..+++|+|.+||+|.+.....+|||.++. +|+.|+||++||+.+
T Consensus         7 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~~P~~yv~~~   61 (64)
T 2ak5_A            7 LVVRAKFNFQ-QTNEDELSFSKGDVIHVTRVEEGGWWEGTH-NGRTGWFPSNYVREI   61 (64)
T ss_dssp             CEEEESSCBC-CCSTTBCCBCTTCEEEEEECCTTSEEEEEE-TTEEEEEEGGGEEEC
T ss_pred             EEEEEccccC-CcCcCcccCCCCCEEEEeEecCCCEEEEEE-CCCEEEEehHHeEEc
Confidence            3567888996 777889999999999877777799999987 669999999999975

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A

Probab=99.35  E-value=1.7e-12  Score=75.04  Aligned_cols=56  Identities=20%  Similarity=0.322  Sum_probs=47.8

Q ss_pred             ccceeccccccc-cCCCceeeecCcEEEEEcceeCCEEEEEe-CCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIA-DGESGLSLLRDQIVIQIGDEVDGMVMIRN-GENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~-~~~~~l~~~~g~~v~~~~~~~~g~~~~~~-~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. + +.+++|+|.+||+|.+.....+|||.++. .+|+.|+||++||+.+
T Consensus         6 ~~~~alydy~-~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~   63 (65)
T 2j05_A            6 RRVRAILPYT-KVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEV   63 (65)
T ss_dssp             CEEEESSCBC-CCTTSSBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             cEEEEccccC-CCCCCCcCcCCCCCEEEEeEecCCCEEEEEECCCCCEEEEEhHHeEEC
Confidence            3578889996 6 78889999999999877777789999984 5679999999999975

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=1.8e-12  Score=75.62  Aligned_cols=55  Identities=20%  Similarity=0.355  Sum_probs=47.1

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. +..+++|+|.+||+|.+..+. +|||.++..+++.|+||++||+.+
T Consensus         8 ~~~~alydy~-~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~~g~~G~~P~~yv~~~   62 (68)
T 1wxb_A            8 KYVKILYDFT-ARNANELSVLKDEVLEVLEDG-RQWWKLRSRSGQAGYVPCNILGEA   62 (68)
T ss_dssp             CCEECSSCBC-CSSSSBCCBCTTCEEEEEECS-SSEEEEECTTSCEEEEETTTCCBC
T ss_pred             EEEEECccCC-CCCCCccCCCCCCEEEEEEcC-CCEEEEEECCCCEEEEEHHHeEEC
Confidence            3567889996 778889999999999766654 999999988889999999999864

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=2.2e-12  Score=77.44  Aligned_cols=58  Identities=22%  Similarity=0.202  Sum_probs=48.9

Q ss_pred             CCCccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          80 PGERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ......++.++|. +...++|+|.+||+|.+.....+|||.++. +++.|+||++||+.+
T Consensus        15 ~~~~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~~P~~yv~~~   72 (79)
T 1x69_A           15 DLGITAVALYDYQ-AAGDDEISFDPDDIITNIEMIDDGWWRGVC-KGRYGLFPANYVELR   72 (79)
T ss_dssp             CCCCCEEESSCCC-CSSSSBCCCCTTCEEEEEEECSSSEEEEEE-TTEEEEEETTSEEEC
T ss_pred             CCCeEEEECccCC-CCCCCCcCcCCCCEEEEeEecCCCeEEEEE-CCcEEEechHHEEEC
Confidence            3345678899996 778889999999999877777899999985 569999999999974

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A

Probab=99.35  E-value=2.2e-12  Score=73.90  Aligned_cols=55  Identities=7%  Similarity=0.226  Sum_probs=46.7

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEe-CCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRN-GENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~-~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. +..+++|+|.+||+|.+.... +|||.+++ .+|+.|+||++||+.+
T Consensus         7 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~~   62 (62)
T 2iim_A            7 NLVIALHSYE-PSHDGDLGFEKGEQLRILEQS-GEWWKAQSLTTGQEGFIPFNFVAKA   62 (62)
T ss_dssp             CEEEESSCBC-CCSTTBCCBCTTCEEEEEECC-SSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             cEEEEcccCC-CCCCCCcCCCCCCEEEEEEcC-CCEEEEEECCCCCEEEEEHHHEEEC
Confidence            3577889996 778889999999999766664 69999997 6789999999999975

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}

Probab=99.35  E-value=1e-12  Score=76.15  Aligned_cols=54  Identities=19%  Similarity=0.315  Sum_probs=46.3

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      .+++.++|. ++.+++|+|.+||+|.+.....+|||.++. +|+.|+||++||+.+
T Consensus         3 ~~~alydy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~fP~~yv~~~   56 (65)
T 2nwm_A            3 AARLKFDFQ-AQSPKELTLQKGDIVYIHKEVDKNWLEGEH-HGRLGIFPANYVEVL   56 (65)
T ss_dssp             EEEECSCBC-CCSTTBCCBCTTCEEEEEECCTTTCEEEEE-TTEEEEECGGGEEEC
T ss_pred             EEEEeeeEC-CCCcCccCCcCCCEEEEEEecCCCEEEEEE-CCcEEEEehhhEEEc
Confidence            467888996 778889999999999887777799999985 569999999999864

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A

Probab=99.35  E-value=2e-12  Score=75.63  Aligned_cols=56  Identities=20%  Similarity=0.322  Sum_probs=47.7

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCC-CeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGE-NRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~-~~~G~~P~~~v~~~  139 (139)
                      ..++.++|..+..+++|+|.+||+|.+.....+|||.++..+ |+.|+||++||+.+
T Consensus         4 ~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~   60 (69)
T 1ruw_A            4 KFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPY   60 (69)
T ss_dssp             EEEESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEETTSSCEEEEEGGGEEEC
T ss_pred             EEEEccccCCCCCCCcccCCCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEEc
Confidence            467888884377888999999999987777779999999885 79999999999864

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A

Probab=99.35  E-value=2.4e-12  Score=73.11  Aligned_cols=55  Identities=16%  Similarity=0.297  Sum_probs=47.0

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcc-eeCCEEEEEe-CCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGD-EVDGMVMIRN-GENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~-~~~g~~~~~~-~~~~~G~~P~~~v~~~  139 (139)
                      ..++.++|. +..+++|+|.+||+|.+..+ ..+|||.++. .+++.|+||++||+.|
T Consensus         4 ~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~l   60 (60)
T 2v1q_A            4 RGIVQYDFM-AESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV   60 (60)
T ss_dssp             EEEECSCBC-CCSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EEEEeeeEC-CCCCCCccCCCCCEEEEEeCCCCCCCEEEEECCCCCEEEEEHHHEEEC
Confidence            467888996 77888999999999977766 4899999998 4679999999999975

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=3.2e-12  Score=74.53  Aligned_cols=55  Identities=13%  Similarity=0.220  Sum_probs=47.5

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. ++.+++|+|.+||+|.+..+..+|||.++ .+++.|+||++||+.+
T Consensus         8 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~   62 (68)
T 2dl4_A            8 NTYVALYKFV-PQENEDLEMRPGDIITLLEDSNEDWWKGK-IQDRIGFFPANFVQRL   62 (68)
T ss_dssp             CEEEESSCCC-CSSTTBCCCCTTCEEEEEECCCSSEEEEE-CSSCEEEEETTTEEEC
T ss_pred             CEEEEeeeEC-CCCcCCcCCCCCCEEEEEEeCCCCEEEEE-ECCcEEEEehHHeEEC
Confidence            3567889996 77888999999999988887789999988 4669999999999975

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A

Probab=99.34  E-value=2.1e-12  Score=74.23  Aligned_cols=56  Identities=20%  Similarity=0.321  Sum_probs=48.0

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeC-CCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNG-ENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~-~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. ++.+++|++.+||+|.+.....+|||.++.. +++.|+||++||+.+
T Consensus         7 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~   63 (64)
T 4f14_A            7 RTYRAMYDYS-AQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFV   63 (64)
T ss_dssp             -CEEESSCBC-CCSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EEEEECeeeC-CcCCCcCCCCCCCEEEEEEeCCCCeEEEEECCCCCEEEEeHHHeEEC
Confidence            3567889996 7788899999999997777777999999986 779999999999975

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A

Probab=99.34  E-value=1.7e-12  Score=75.53  Aligned_cols=56  Identities=16%  Similarity=0.270  Sum_probs=48.1

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCC-CeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGE-NRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~-~~~G~~P~~~v~~~  139 (139)
                      ..+++.++|. ++.+++|+|.+||+|.+.....+|||.++..+ |+.|+||++||+.+
T Consensus         7 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   63 (67)
T 2o9s_A            7 GEAIAKFNFN-GDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVI   63 (67)
T ss_dssp             EEEEECSCBC-CSSTTBCCBCTTCEEEEEEECSSSEEEEECTTSSCEEEEEGGGEEEE
T ss_pred             EEEEECccCC-cCCcCccCCCCCCEEEEEEecCCCEEEEEECCCCCEEEEChHHeEEC
Confidence            3577889996 77888999999999987777779999999876 69999999999864

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=3.2e-12  Score=76.17  Aligned_cols=54  Identities=13%  Similarity=0.116  Sum_probs=47.3

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      .+++.++|. +..+++|+|.+||+|.+.....+|||.++. +++.|+||++||+.+
T Consensus        12 ~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~~P~~yv~~~   65 (76)
T 2epd_A           12 EAVACFAYT-GRTAQELSFRRGDVLRLHERASSDWWRGEH-NGMRGLIPHKYITLP   65 (76)
T ss_dssp             EEEESSCEE-CSSTTBCEECTTCEEEEEEEEETTEEEEEE-TTEEEEEESSSEECC
T ss_pred             EEEECcCCC-CCCCCccCCCCCCEEEEEEeCCCCEEEEEE-CCcEEEEehHHEEEc
Confidence            467888996 778889999999999888877899999998 669999999999864

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}

Probab=99.34  E-value=1.9e-12  Score=75.54  Aligned_cols=54  Identities=17%  Similarity=0.320  Sum_probs=46.9

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      .+++.++|. +..+++|+|.+||+|.+.... +|||.+++.+++.|+||++||+.+
T Consensus         9 ~~~alydy~-~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~~g~~G~~P~~yv~~~   62 (68)
T 1wxt_A            9 KMQVLYEFE-ARNPRELTVVQGEKLEVLDHS-KRWWLVKNEAGRSGYIPSNILEPL   62 (68)
T ss_dssp             EEEESSCBC-CCSSSBCCBCTTCEEEEEECS-SSEEEEECTTSCEEEEEGGGEECC
T ss_pred             EEEECceEC-CCCcCcCCCCCCCEEEEEEcC-CCEEEEEECCCCEEEEEhHHcEEC
Confidence            567889996 788889999999999766664 999999988889999999999864

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A

Probab=99.34  E-value=2.2e-12  Score=73.93  Aligned_cols=54  Identities=17%  Similarity=0.317  Sum_probs=45.7

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcc-eeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGD-EVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~-~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      .+++.++|. ++.+++|+|.+||+|.+... ..+|||.++. +|+.|+||++||+.+
T Consensus         3 ~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~-~g~~G~~P~~yv~~~   57 (62)
T 2j6f_A            3 DYIVEYDYD-AVHDDELTIRVGEIIRNVKKLQEEGWLEGEL-NGRRGMFPDNFVKEI   57 (62)
T ss_dssp             CEEECSCBC-CSSTTBCCBCTTCEEEEEEECSSTTEEEEEE-TTEEEEEEGGGEEEC
T ss_pred             EEEECccCC-cCCcCCcCCcCCCEEEEEEecCCCCEEEEEE-CCcEEEechHHEEEC
Confidence            467888996 77888999999999976665 6789999986 669999999999875

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.34  E-value=8.9e-13  Score=75.55  Aligned_cols=54  Identities=9%  Similarity=0.265  Sum_probs=46.6

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..++.++|. +..+++|+|.+||+|.+.....+|||.++ .+|+.|+||++||+.+
T Consensus         7 ~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~   60 (62)
T 1k4u_S            7 QVEALFSYE-ATQPEDLEFQEGDIILVLSKVNEEWLEGE-SKGKVGIFPKVFVEDS   60 (62)
T ss_dssp             EEECCSCBC-CCSSSBCCBCSSCEEEEEEESSSSCEEEE-CSSCEEEECGGGCCCS
T ss_pred             EEEECCCCC-cCCCCCccCCCCCEEEEEEeCCCCEEEEE-ECCcEEEEeHHHEEEC
Confidence            567888996 77888999999999987777779999998 5679999999999864

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A

Probab=99.34  E-value=2.4e-12  Score=74.15  Aligned_cols=54  Identities=17%  Similarity=0.230  Sum_probs=45.9

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcce--eCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDE--VDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~--~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..++.++|. ++.+++|+|.+||+|.+....  .+|||.++. +|+.|+||++||+.|
T Consensus         8 ~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~~l   63 (64)
T 2jte_A            8 YCRTLFPYT-GTNEDELTFREGEIIHLISKETGEAGWWKGEL-NGKEGVFPDNFAVQI   63 (64)
T ss_dssp             EEEESSCBC-CSSSSBCCBCTTCEEEEEESCSSSTTEEEEEE-TTEEEEEEGGGEEEC
T ss_pred             EEEECccCC-ccCCCccCCCCCCEEEEEECCCCCCCEEEEEE-CCeEEEEeHHHEEEC
Confidence            567889996 788889999999999776553  689999986 669999999999975

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A

Probab=99.34  E-value=2.2e-12  Score=75.51  Aligned_cols=54  Identities=20%  Similarity=0.270  Sum_probs=46.1

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcce--eCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDE--VDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~--~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..++.++|. ++.+++|+|.+||+|.+....  .+|||.++. +|+.|+||++||+.+
T Consensus         4 ~~~Alydy~-a~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~-~g~~G~~P~~yV~~~   59 (69)
T 2ydl_A            4 YCKVIFPYE-AQNDDELTIKEGDIVTLINKDCIDVGWWEGEL-NGRRGVFPDNFVKLL   59 (69)
T ss_dssp             EEEESSCBC-CCSTTBCCBCTTCEEEEEESCCSSTTEEEEEE-TTEEEEEEGGGEEEC
T ss_pred             EEEEcccCC-CCCCCccccCCCCEEEEEEcCCCCCCEEEEEE-CCcEEEecHHHEEEC
Confidence            467889996 788889999999999777664  789999987 669999999999874

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}

Probab=99.34  E-value=1.4e-12  Score=76.22  Aligned_cols=55  Identities=13%  Similarity=0.174  Sum_probs=48.2

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQE  138 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~  138 (139)
                      ..+++.++|. +..+++|+|.+||+|.+.....+|||.++..+|+.|+||++||+.
T Consensus         7 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~   61 (69)
T 4esr_A            7 PTVVALYDYT-ANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVAS   61 (69)
T ss_dssp             CEEEESSCBC-CCSTTBCCBCTTCEEEEEEECSSSEEEEEEETTEEEEEEGGGEEE
T ss_pred             CEEEECccCC-CCCcCcCCCCCCCEEEEEEecCCCeEEEEeCCCCEEEEchHHeEE
Confidence            3577889995 778889999999999877777899999998788999999999986

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=3.1e-12  Score=74.58  Aligned_cols=55  Identities=13%  Similarity=0.167  Sum_probs=47.4

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. +..+++|+|.+||+|.+.....+|||.++. +++.|+||++||+.+
T Consensus         8 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~~P~~yv~~~   62 (68)
T 1x2k_A            8 KVFRALYTFE-PRTPDELYFEEGDIIYITDMSDTNWWKGTS-KGRTGLIPSNYVAEQ   62 (68)
T ss_dssp             EEEEESSCCC-CCSTTBCCCCSSCEEEEEECSCSSEEEEES-SSCEEEEETTTEEEC
T ss_pred             EEEEECceEC-CCCCCcccCCCCCEEEEEEcCCCCEEEEEE-CCcEEEEehHHeEEc
Confidence            3567889996 777889999999999887777899999987 679999999999874

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}

Probab=99.33  E-value=1e-12  Score=76.16  Aligned_cols=54  Identities=19%  Similarity=0.234  Sum_probs=46.5

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      .+++.++|. ++.+++|+|.+||+|.+.....+|||.++. +|+.|+||++||+.+
T Consensus         3 ~~~Alydy~-~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~-~g~~G~fP~~yv~~~   56 (65)
T 2fei_A            3 QCKVLFEYI-PQNEDELELKVGDIIDINEEVEEGWWSGTL-NNKLGLFPSNFVKEL   56 (65)
T ss_dssp             EEECSSCCC-CCSTTBCCCCTTCEEECCCCSSSSEEEEES-SSCEEEEETTTSCBC
T ss_pred             EEEECccCC-cCCcCccCCCCCCEEEEEEecCCCEEEEEE-CCcEEEecHHHEEEc
Confidence            457788995 788889999999999888887899999986 679999999999864

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.33  E-value=3.6e-13  Score=104.18  Aligned_cols=57  Identities=33%  Similarity=0.849  Sum_probs=52.7

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEecCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~   80 (139)
                      ..++|+|+|.++.++||+|++||++.|++..+++||.++.  +|++|+||++|++....
T Consensus         3 ~~~~al~~~~~~~~~el~~~~gd~~~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~~~~   61 (452)
T 1fmk_A            3 TTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDS   61 (452)
T ss_dssp             EEEEESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEETTS
T ss_pred             eEEEECCccCCCCCCCCCccCCCEEEEeccCCCCceEEEEcCCCcccccCccccccccc
Confidence            4589999999999999999999999999988899999999  79999999999988543

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=1.8e-12  Score=77.69  Aligned_cols=57  Identities=25%  Similarity=0.272  Sum_probs=48.6

Q ss_pred             CccceeccccccccCCCceeeecCcEEEEEccee-CCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          82 ERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEV-DGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~-~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ....++.++|. +..+++|+|.+||+|.+....+ +|||.++..+|+.|+||++||+.+
T Consensus        13 ~~~~~alydy~-~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   70 (78)
T 2dl5_A           13 PLTCKVVYSYK-ASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQFP   70 (78)
T ss_dssp             SEEEEECSCBC-CCSTTBCCBCSSEEEEEEECCSSSSEEEEECTTCCEEEEETTTSCCS
T ss_pred             CcEEEEceeEC-CCCCCCCCCCCCCEEEEEeccCCCCcEEEEeCCCCEEEEEhHHEEEC
Confidence            34678889996 7888899999999997777654 899999998789999999999864

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}

Probab=99.33  E-value=3e-12  Score=72.84  Aligned_cols=54  Identities=11%  Similarity=0.135  Sum_probs=46.7

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQE  138 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~  138 (139)
                      ...++.++|. ++.+++|+|.+||+|.+.....+|||.++. +|+.|+||++||+.
T Consensus         7 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~~P~~yv~~   60 (60)
T 2gnc_A            7 EFAIAKFDYV-GRSARELSFKKGASLLLYHRASEDWWEGRH-NGIDGLVPHQYIVV   60 (60)
T ss_dssp             EEEEESSCBC-CSSTTBCCBCTTCEEEEEEEEETTEEEEEE-TTEEEEEEGGGEEC
T ss_pred             EEEEECCCCC-cCCcCCcCCCCCCEEEEEEecCCCEEEEEE-CCeEEEEeHhhEEC
Confidence            3567888996 778889999999999888887899999998 56999999999973

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.33  E-value=2.1e-12  Score=77.91  Aligned_cols=56  Identities=25%  Similarity=0.389  Sum_probs=47.3

Q ss_pred             CccceeccccccccCCCceeeecCcEEEEEcc--eeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          82 ERPLQVTHNLQIADGESGLSLLRDQIVIQIGD--EVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~--~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...+++.++|. ++.+++|+|.+||+|.+...  .++|||.++. +++.|+||++||+.+
T Consensus        17 ~~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~-~g~~G~~P~~yv~~~   74 (81)
T 1x43_A           17 NRKARVLYDYD-AANSTELSLLADEVITVFSVVGMDSDWLMGER-GNQKGKVPITYLELL   74 (81)
T ss_dssp             CEEEEESSCCC-CSSTTBCCCCTTCEEEEECCTTCCTTEEEEEE-TTEEEEEEGGGEEEC
T ss_pred             CeEEEEcccCC-CCCCCcCCCCCCCEEEEEEcCCCCCCcEEEEE-CCCEEEEehHHEEEC
Confidence            34678899996 78888999999999977766  4689999984 669999999999975

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A

Probab=99.33  E-value=2.9e-12  Score=73.87  Aligned_cols=55  Identities=20%  Similarity=0.258  Sum_probs=47.6

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. +..+++|++.+||+|.+.....+|||.++. +|+.|+||++||+.+
T Consensus         8 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~-~g~~G~~P~~yv~~~   62 (65)
T 3u23_A            8 RQCKVLFEYI-PQNEDELELKVGDIIDINEEVEEGWWSGTL-NNKLGLFPSNFVKEL   62 (65)
T ss_dssp             CEEEECSCBC-CSSTTBCCBCTTCEEEEEEEEETTEEEEEE-TTEEEEEEGGGEEEC
T ss_pred             eEEEEeeeeC-CCCcCCcCCCCCCEEEEEEecCCCEEEEEE-CCCEEEeehHHEEEC
Confidence            3577888995 778889999999999888888899999995 669999999999975

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}

Probab=99.33  E-value=2.8e-12  Score=72.45  Aligned_cols=53  Identities=13%  Similarity=0.166  Sum_probs=46.1

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQE  138 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~  138 (139)
                      ..++.++|. +..+++|+|.+||+|.+.....+|||.++. +++.|+||++||++
T Consensus         5 ~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~~P~~yv~~   57 (58)
T 1zlm_A            5 VFRALYTFE-PRTPDELYFEEGDIIYITDMSDTNWWKGTS-KGRTGLIPSNYVAE   57 (58)
T ss_dssp             EEEESSCBC-CSSTTBCCBCTTCEEEEEECCSSSEEEEEE-TTEEEEEEGGGEEE
T ss_pred             EEEECccCC-CCCCCCccCCCCCEEEEEEeCCCCEEEEEE-CCCEEEEehHHEEe
Confidence            467888996 777889999999999887777789999987 66999999999985

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A

Probab=99.33  E-value=3.2e-12  Score=73.78  Aligned_cols=55  Identities=24%  Similarity=0.246  Sum_probs=47.3

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..+++.++|. ++.+++|+|.+||+|.+.....+|||.++. +|+.|+||++||+.+
T Consensus        10 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~~P~~yv~~~   64 (65)
T 3ulr_B           10 ITAIALYDYQ-AAGDDEISFDPDDIITNIEMIDDGWWRGVC-KGRYGLFPANYVELR   64 (65)
T ss_dssp             SCEEECSCBC-CCSTTBCCBCTTCEEEEEECCSSSEEEEEE-TTEEEEEEGGGEEEC
T ss_pred             eEEEEEeeEC-CCCcCEeeEecCCEEEEEEecCCCEEEEEE-CCcEEEEehHHeEEC
Confidence            3577889995 778889999999999878777899999985 669999999999975

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}

Probab=99.32  E-value=2.1e-12  Score=71.93  Aligned_cols=51  Identities=18%  Similarity=0.338  Sum_probs=43.7

Q ss_pred             ceeccccccccCCCceeeecCcEEEEEccee-CCEEEEEeCCCeEEeeecCCEE
Q psy6450          85 LQVTHNLQIADGESGLSLLRDQIVIQIGDEV-DGMVMIRNGENRQGVCPLKYLQ  137 (139)
Q Consensus        85 ~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~-~g~~~~~~~~~~~G~~P~~~v~  137 (139)
                      .++.++|. +..+++|+|.+||+|.+..... +|||.++. +|+.|+||++||+
T Consensus         3 ~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~-~g~~G~~P~~yv~   54 (54)
T 2a28_A            3 MEAIYAYE-AQGDDEISIDPGDIITVIRGDDGSGWTYGEC-DGLKGLFPTSYCK   54 (54)
T ss_dssp             EEBCSCBC-CCSTTBCCBCTTCEEEEEECCCSSSEEEEEE-TTEEEEEEGGGBC
T ss_pred             EEECccCC-cCCCCCccCCCCCEEEEEEecCCCCEEEEEE-CCeEEEeeHHHcC
Confidence            56788886 7788899999999997776664 79999999 7799999999985

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A

Probab=99.32  E-value=2.8e-12  Score=75.89  Aligned_cols=55  Identities=18%  Similarity=0.198  Sum_probs=46.4

Q ss_pred             cceecccccc-ccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQI-ADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~-~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..++.++|.. ++.+++|+|.+||+|.+.....+|||.++. +|+.|+||++||+.+
T Consensus        11 ~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~-~g~~G~fP~~yv~~~   66 (73)
T 2ebp_A           11 RARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLL-NNKVGTFKFIYVDVL   66 (73)
T ss_dssp             EEEECSCBCCCTTCCSBCCBCSSCEEEEEECCSSSCEEEEC-SSCEEEECSTTEEEC
T ss_pred             EEEEeeccCCCCCCCCccCCCCCCEEEEEEeCCCCeEEEEE-CCCEEEEeHHHEEEC
Confidence            5678899964 247889999999999888777899998866 569999999999975

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.32  E-value=2.6e-12  Score=72.55  Aligned_cols=54  Identities=13%  Similarity=0.287  Sum_probs=45.7

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEccee-CCEEEEEeC-CCeEEeeecCCEEe
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEV-DGMVMIRNG-ENRQGVCPLKYLQE  138 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~-~g~~~~~~~-~~~~G~~P~~~v~~  138 (139)
                      ..++.++|. ++.+++|++.+||+|.+..... +|||.++.. +|+.|+||++||+.
T Consensus         3 ~~~alydy~-~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~~g~~G~~P~~yv~~   58 (58)
T 1zuu_A            3 ENKVLYAYV-QKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI   58 (58)
T ss_dssp             CCEECSCBC-CCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEEC
T ss_pred             EEEEeeeEC-CcCCCcccCCCCCEEEEeEcCCCCCCEEEEECCCCCEEEEEHHHEEC
Confidence            367888996 7788899999999997776665 799999986 77999999999973

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A

Probab=99.32  E-value=2.9e-12  Score=76.98  Aligned_cols=55  Identities=18%  Similarity=0.216  Sum_probs=47.9

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEe-CCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRN-GENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~-~~~~~G~~P~~~v~~~  139 (139)
                      ..++.++|. ++.+++|+|.+||+|.+.....+|||.++. .+|+.|+||++||+.+
T Consensus         7 ~~~Alydy~-~~~~~eLs~~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   62 (79)
T 3cqt_A            7 LFEALYDYE-ARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPV   62 (79)
T ss_dssp             CEEESSCBC-CCSTTBCCBCTTCEEEEEECTTSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EEEECccCC-CCCcCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEeehHHeEEC
Confidence            567889996 778889999999999877777799999998 5779999999999875

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}

Probab=99.32  E-value=2.6e-12  Score=75.82  Aligned_cols=55  Identities=18%  Similarity=0.317  Sum_probs=46.9

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. +..+++|+|.+||+|.+..+ .+|||.++..+|+.|+||++||+.+
T Consensus         8 ~~~~alydy~-~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~~   62 (72)
T 2jw4_A            8 VVVVAKFDYV-AQQEQELDIKKNERLWLLDD-SKSWWRVRNSMNKTGFVPSNYVERK   62 (72)
T ss_dssp             EEEECSSCCC-CSSTTSCCCCTTCEEEEEEC-SSSSEEEECTTSCEEEECTTSCEEC
T ss_pred             eEEEECcCCC-cCCCCcccCCCCCEEEEEEC-CCCEEEEEECCCCEEEEEhhHEEEc
Confidence            4577889996 77888999999999976665 5799999987889999999999864

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}

Probab=99.32  E-value=4e-12  Score=74.46  Aligned_cols=56  Identities=16%  Similarity=0.270  Sum_probs=48.6

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCC-CeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGE-NRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~-~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. +..+++|+|.+||+|.+.....+|||.++..+ ++.|+||++||+.+
T Consensus         8 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   64 (70)
T 2ecz_A            8 GEAIAKFNFN-GDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVI   64 (70)
T ss_dssp             BCEEESSCCC-CCSTTBCCCCTTCBCEEEEEEETTEEEEEETTTTEEEEECTTTEEES
T ss_pred             CEEEECccCC-CCCcCCcCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHEEEC
Confidence            3577889996 77888999999999988877789999999875 79999999999975

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A

Probab=99.32  E-value=4.1e-12  Score=74.02  Aligned_cols=55  Identities=20%  Similarity=0.288  Sum_probs=47.3

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. +..+++|+|.+||+|.+.....+|||.++ .+++.|+||++||+.+
T Consensus         8 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~-~~g~~G~~P~~yv~~~   62 (68)
T 2dl3_A            8 RPARAKFDFK-AQTLKELPLQKGDIVYIYKQIDQNWYEGE-HHGRVGIFPRTYIELL   62 (68)
T ss_dssp             EEEEESSCBC-CSSTTBCCBCTTCEEEEEECCSTTEEEEE-CSSCEEEEETTTEEEC
T ss_pred             cEEEECccCC-CCCcCCccCCCCCEEEEeEecCCCEEEEE-ECCCEEEEchHHEEEC
Confidence            3567889996 77888999999999988877789999998 5679999999999975

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*

Probab=99.32  E-value=3.8e-12  Score=75.16  Aligned_cols=56  Identities=16%  Similarity=0.156  Sum_probs=48.4

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeC-CCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNG-ENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~-~~~~G~~P~~~v~~~  139 (139)
                      ..+++.++|. +..+++|+|.+||+|.+.....+|||.++.. +|+.|+||++||+.+
T Consensus        16 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   72 (73)
T 3h0h_A           16 TLFVALYDYE-AITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV   72 (73)
T ss_dssp             CEEEESSCBC-CSSTTBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EEEEECccCC-CCCCCcceEeCCCEEEEEEecCCCeEEEEECCCCCEEEEEHHHeEEC
Confidence            3567889995 7788899999999998777777999999984 779999999999975

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A

Probab=99.32  E-value=2.6e-12  Score=72.51  Aligned_cols=55  Identities=15%  Similarity=0.283  Sum_probs=46.5

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCC-CeEEeeecCCEEe
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGE-NRQGVCPLKYLQE  138 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~-~~~G~~P~~~v~~  138 (139)
                      ..++.++|..+...++|++.+||+|.+.....+|||.++..+ |+.|+||++||+.
T Consensus         2 ~~~al~d~~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~   57 (58)
T 1zuy_A            2 MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKP   57 (58)
T ss_dssp             EEEESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEESSCSCEEEEEGGGEEC
T ss_pred             EEEEecccCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEecHHHEEE
Confidence            356788883377788999999999977777779999999884 7999999999985

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}

Probab=99.32  E-value=3.3e-12  Score=74.43  Aligned_cols=55  Identities=7%  Similarity=0.120  Sum_probs=47.3

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. +..+++|+|.+||+|.+.....+|||.++. +|+.|+||++||+.+
T Consensus         8 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~~P~~yv~~~   62 (68)
T 2djq_A            8 PRAKALCNYR-GKNPGDLKFNKGDVILLRRQLDENWYQGEI-NGVSGIFPASSVEVI   62 (68)
T ss_dssp             CEEEECSCCC-SCCTTCCCCCTTCEEEEEECCCSSEEEEEE-TTEEEEEESSSEETT
T ss_pred             eEEEECCCCC-CCCcCCccCCCCCEEEEEEecCCCEEEEEE-CCcEEEeehHHEEEc
Confidence            3567889996 778889999999999888777899999985 669999999999864

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A

Probab=99.32  E-value=3.1e-12  Score=76.24  Aligned_cols=56  Identities=21%  Similarity=0.429  Sum_probs=48.4

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCC--CeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGE--NRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~--~~~G~~P~~~v~~~  139 (139)
                      ..+++.++|. ++.+++|+|.+||+|.+.....+|||.++..+  ++.|+||++||+.+
T Consensus        11 ~~~~alydy~-~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~G~~P~~yv~~~   68 (76)
T 2ed1_A           11 RRVKTIYDCQ-ADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHIL   68 (76)
T ss_dssp             EEEEESSCCC-CSSSSBCCCCSSCEEEESSCCSSSEEEEEETTCTTCEEEEEGGGEEEC
T ss_pred             eEEEECccCC-CCCcCCcCcCCCCEEEEEEecCCCEEEEEECCCCCCEEEEehHHeEEC
Confidence            4578889996 78888999999999988888889999999654  58999999999975

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.32  E-value=2e-12  Score=75.56  Aligned_cols=56  Identities=18%  Similarity=0.323  Sum_probs=48.5

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. ++.+++|+|.+||+|.+.....+|||.++..+++.|+||++||+.+
T Consensus         8 ~~~~alydy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~G~~P~~yv~~~   63 (69)
T 2eqi_A            8 RTVKALYDYK-AKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDI   63 (69)
T ss_dssp             CEEEESSCBC-CCSSSCCCBCTTCEEESCCCCSSSCEEEEETTEEEEEECGGGEEEC
T ss_pred             cEEEECeeEC-CCCcCccCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEchHHcEEC
Confidence            4577889996 7788899999999998887778999999988756699999999975

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A

Probab=99.32  E-value=7.3e-13  Score=77.06  Aligned_cols=56  Identities=13%  Similarity=0.176  Sum_probs=49.0

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. +...++|+|.+||+|.+.....+|||.+++.+|+.|+||++||+.+
T Consensus         9 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   64 (67)
T 1aww_A            9 KKVVALYDYM-PMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEA   64 (67)
T ss_dssp             CEEEBSSCCC-CSSSSSCCCCSSCEEECCCCCSSSEECCBCTTSCBCCEETTTBCCS
T ss_pred             eEEEECccCC-CCCCCCccCCCCCEEEEEEccCCCcEEEEECCCCEEEEchHhEEEc
Confidence            3577889996 7788899999999998888778999999978889999999999864

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}

Probab=99.32  E-value=4.2e-12  Score=74.55  Aligned_cols=56  Identities=16%  Similarity=0.307  Sum_probs=47.6

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcce-eCCEEEEEe-CCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDE-VDGMVMIRN-GENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~-~~g~~~~~~-~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. +..+++|+|.+||+|.+.... .+|||.++. .+|+.|+||.+||+.+
T Consensus         7 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   64 (71)
T 2jt4_A            7 KRGIVQYDFM-AESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV   64 (71)
T ss_dssp             EEEEECSCBC-CSSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEET
T ss_pred             CEEEEcccCC-CCCCCcccCCCCCEEEEEECCCCCCCEEEEECCCCCeEEechHHeEEC
Confidence            4567889996 778889999999999777665 799999998 3679999999999875

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=2.9e-12  Score=75.02  Aligned_cols=56  Identities=20%  Similarity=0.246  Sum_probs=48.3

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeC-CCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNG-ENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~-~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. ++.+++|+|.+||+|.+.....+|||.++.. +++.|+||++||+.+
T Consensus         8 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~   64 (70)
T 2ct3_A            8 TPYRAMYQYR-PQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPV   64 (70)
T ss_dssp             EEEEESSCBC-CSSTTBCCBCTTEEEEEEEECSSSCEEEEESSSCCEEEECTTTEEET
T ss_pred             cEEEECccCC-cCCcCCccCCCCCEEEEEEECCCCEEEEEECCCCCEEEechHHeEEC
Confidence            3567889996 7788899999999998777777999999987 579999999999975

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...

Probab=99.31  E-value=4.5e-12  Score=72.42  Aligned_cols=55  Identities=20%  Similarity=0.316  Sum_probs=47.4

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. +...++|++.+||+|.+.....+|||.++. +|+.|+||++||+.+
T Consensus         7 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~-~g~~G~~P~~yv~~~   61 (62)
T 3ngp_A            7 ELVLVLYDYQ-EKSPRELTVKKGDILTLLNSTNKDWWKIEV-NGRQGFVPAAYLKKL   61 (62)
T ss_dssp             CEEEECSCBC-CCSTTBCCBCTTCEEEEEECCSSSEEEEEE-TTEEEEEEGGGEEEC
T ss_pred             EEEEECcCCC-CCCCCCccCCCCCEEEEeEecCCCeEEEEE-CCEEEEEEHHHEEEC
Confidence            3567888995 778889999999999888777899999986 569999999999975

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.31  E-value=5.2e-12  Score=73.40  Aligned_cols=57  Identities=16%  Similarity=0.240  Sum_probs=46.0

Q ss_pred             CccceeccccccccCCCc-eeeecCcEEEEEc-ceeCCEEEEEeC-CCeEEeeecCCEEeC
Q psy6450          82 ERPLQVTHNLQIADGESG-LSLLRDQIVIQIG-DEVDGMVMIRNG-ENRQGVCPLKYLQEV  139 (139)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~-l~~~~g~~v~~~~-~~~~g~~~~~~~-~~~~G~~P~~~v~~~  139 (139)
                      ...+++.++|. +..+++ |+|.+||+|.+.. ...+|||.+++. +|+.|+||++||+.+
T Consensus         7 ~~~~~al~dy~-~~~~~e~Lsf~~Gd~i~v~~~~~~~gW~~g~~~~~g~~G~fP~~yv~~l   66 (67)
T 3rnj_A            7 RMRVKAIFSHA-AGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVL   66 (67)
T ss_dssp             CCEEEESSCBC-CCSCTTBCCBCTTCEEEECSSSCBTTEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CeEEEEccccC-CCCCCCCccCCCCCEEEEeeccCCCCCEEEEECCCCCEEEEEHHHeEEC
Confidence            34578889996 555555 9999999997764 467899999965 779999999999975

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=99.31  E-value=1.4e-12  Score=96.61  Aligned_cols=57  Identities=25%  Similarity=0.359  Sum_probs=52.6

Q ss_pred             EEEEEeeec--CCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          25 LFVVLYNFK--SRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        25 ~~~al~~~~--~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      +++|+|+|.  +..++||+|++||+|.|+++.+++||.|+.+|+.||||++||+.+...
T Consensus       239 ~~~al~d~~~~a~~~~eL~~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~  297 (304)
T 2eyz_A          239 YARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQQ  297 (304)
T ss_dssp             CSCCSSCBCCCTTCSSCCCBCTTSCCEEEEECTTSCEEEEETTEEEECCCTTSCCCSSC
T ss_pred             EEEEeeeecCCCCCCCeecccCCCEEEEEEecCCCeEEEEECCceEEechHHEEECCCC
Confidence            589999999  779999999999999999998899999999999999999999987653

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.31  E-value=2.4e-12  Score=79.29  Aligned_cols=55  Identities=15%  Similarity=0.187  Sum_probs=47.8

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcc--eeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGD--EVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~--~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      .+++.++|. +..+++|+|.+||+|.+..+  ..+|||.+++.+++.|+||.+||+.+
T Consensus        19 ~~~alydy~-~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   75 (91)
T 1wx6_A           19 VVQTLYPFS-SVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVL   75 (91)
T ss_dssp             EEEESSCCC-CSSSSBCCCCTTCEEEEEECCSSCTTEEEEECTTCCEEEEEGGGEEEE
T ss_pred             EEEEeecCC-cCCCCcccCCCCCEEEEEECCCCCCCcEEEEeCCCCEEEEchHHEEEC
Confidence            577889996 78888999999999977766  67899999988889999999999864

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A

Probab=99.31  E-value=4.9e-12  Score=72.17  Aligned_cols=55  Identities=16%  Similarity=0.315  Sum_probs=46.5

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEE-eeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQG-VCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G-~~P~~~v~~~  139 (139)
                      ...++.++|. ++.+++|+|.+||+|.+.....+|||.++..+ +.| +||++||+.|
T Consensus         4 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g-~~gG~~P~~yv~~~   59 (61)
T 1y0m_A            4 SAVKALFDYK-AQREDELTFTKSAIIQNVEKQDGGWWRGDYGG-KKQLWFPSNYVEEM   59 (61)
T ss_dssp             CCEEESSCBC-CCSTTBCCBCTTCEEEEEECCSSSEEEEEETT-EEEEEEEGGGEEEC
T ss_pred             CEEEECcCCC-cCCCCCcCCcCCCEEEEEEecCCCEEEEEECC-eEEEEEChHHcEEC
Confidence            3567889996 77888999999999988877789999999855 665 9999999975

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A

Probab=99.31  E-value=6.4e-13  Score=94.87  Aligned_cols=61  Identities=25%  Similarity=0.621  Sum_probs=55.0

Q ss_pred             CccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEecCCCC
Q psy6450          22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIKVQPGE   82 (139)
Q Consensus        22 ~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~~~   82 (139)
                      +...++|+|+|.++.++||+|++||+|.|+++.+++||++++ +|+.|+||++||+.+....
T Consensus       135 ~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~  196 (230)
T 2dvj_A          135 EAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPAS  196 (230)
T ss_dssp             CCCCCBCCSCCCCSSSSSCCCCSSCBCCCCBCSCSSEEEEECTTSCEEEEEGGGSCCCCSSC
T ss_pred             cceeEEEeeeecCCCCCCccCcCCCEEEEEEccCCCcEEEEeCCCCEEEEehHHeEEcCCCC
Confidence            345689999999999999999999999999998899999995 8999999999999886543

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}

Probab=99.31  E-value=2.3e-12  Score=75.36  Aligned_cols=54  Identities=20%  Similarity=0.301  Sum_probs=45.8

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcce---eCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDE---VDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~---~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      .+++.++|. ++.+++|+|.+||+|.+....   .+|||.++. +|+.|+||++||+.+
T Consensus         5 ~~~alydy~-~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~-~g~~G~~P~~yv~~~   61 (69)
T 1wyx_A            5 LAKALYDNV-AESPDELSFRKGDIMTVLEQDTQGLDGWWLCSL-HGRQGIVPGNRLKIL   61 (69)
T ss_dssp             EEEESSCBC-CSSTTBCCBCTTCEEEEEETTGGGCTTEEEEEE-TTEEEEEEGGGEEEE
T ss_pred             EEEECccCC-cCCCCccCCcCCCEEEEeECCCCCCCCcEEEEE-CCcEEEechhhEEEC
Confidence            467888996 788889999999999777665   799999985 669999999999864

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens}

Probab=99.31  E-value=2.8e-12  Score=88.67  Aligned_cols=57  Identities=26%  Similarity=0.482  Sum_probs=51.3

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE---CCeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC---MGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~---~g~~G~~P~~~v~~~~~   80 (139)
                      ..+++|+|+|.++.+++|+|++||+|.|++..+ +||+|+.   +|+.|+||++||+.+..
T Consensus        17 ~~~~~Alydf~~~~~~eLs~~~Gd~i~v~~~~~-~W~~g~~~~~~g~~G~fP~nyV~~~~~   76 (184)
T 3a98_A           17 ERHGVAIYNFQGSGAPQLSLQIGDVVRIQETCG-DWYRGYLIKHKMLQGIFPKSFIHIKEV   76 (184)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEEEET-TEEEEEETTEEEEEEEEEGGGEEEECC
T ss_pred             ceEEEEeeeeCCCCCCCCCcCCCCEEEEEecCC-CEEEEEEecCCCceEEECcceEEEecc
Confidence            457999999999999999999999999999865 5999998   68899999999998654

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A

Probab=99.31  E-value=4.8e-12  Score=74.78  Aligned_cols=55  Identities=11%  Similarity=0.182  Sum_probs=47.7

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. +..+++|+|.+||+|.+.....+|||.++. +++.|+||++||+.+
T Consensus         8 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~~P~~yv~~~   62 (73)
T 2dbm_A            8 PCCRALYDFE-PENEGELGFKEGDIITLTNQIDENWYEGML-HGHSGFFPINYVEIL   62 (73)
T ss_dssp             CEEEESSCBC-CCSTTCCCBCTTCEEECCBCSSSSEEEEEE-TTEEEEEESSSEEES
T ss_pred             CEEEEccccC-CCCCCCccCCCCCEEEEEEecCCCEEEEEE-CCCEEEechHHEEEc
Confidence            3577889996 778889999999999888877899999987 669999999999974

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.31  E-value=9e-13  Score=103.12  Aligned_cols=57  Identities=32%  Similarity=0.660  Sum_probs=52.2

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECC-CCCeeEEEECCeEEEEcCCcEEecCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTS-DQNWWKGKCMGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~   80 (139)
                      ..++|+|||.++.++||+|++||++.|++.. +++||.++..|+.|+||++|++.+..
T Consensus        44 ~~~~alyd~~~~~~~els~~~gd~~~v~~~~~~~~w~~~~~~~~~G~~P~~yv~~~~~  101 (495)
T 1opk_A           44 NLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVNS  101 (495)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEECSSCEEEEEGGGEEESSS
T ss_pred             cEEEEeCCcCCCCCCCCCccCCCEEEEeecCCCCCceeeeecCCcceecccccccccc
Confidence            4699999999999999999999999999876 77999999988899999999998654

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=5.6e-12  Score=74.95  Aligned_cols=55  Identities=15%  Similarity=0.282  Sum_probs=46.2

Q ss_pred             ccceeccccccccC-------CCceeeecCcEEEEEc-ceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADG-------ESGLSLLRDQIVIQIG-DEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~-------~~~l~~~~g~~v~~~~-~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..++|.++|. +..       +++|+|.+||+|.+.. ...+|||.++. +|+.|+||++||+.+
T Consensus         8 ~~~~Alydy~-~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~-~g~~G~fP~~yv~~~   70 (75)
T 2ege_A            8 KIMIAALDYD-PGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGEL-GGHRGLVPAHLLDHM   70 (75)
T ss_dssp             EEEEESSCBC-TTTTCCCSSSCCBCCBCTTCEEEEESCCCTTCEEEEES-SSCEEEEETTTEEEC
T ss_pred             cEEEECCCCC-CCccccCCCCCCcceECCCCEEEEeEccCCCCEEEEEE-CCcEEEEChHHeEEc
Confidence            3577889996 556       7899999999997775 46789999887 679999999999975

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}

Probab=99.31  E-value=6.1e-12  Score=73.64  Aligned_cols=56  Identities=21%  Similarity=0.284  Sum_probs=48.3

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEe-CCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRN-GENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~-~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. ++.+++|+|.+||+|.+.....+|||.+++ .+++.|+||++||+.+
T Consensus         8 ~~~~al~~y~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   64 (70)
T 2cuc_A            8 NMFVALHTYS-AHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPV   64 (70)
T ss_dssp             CCEECCSCBC-CCSTTBCCBCTTCEEEEEEEEETTEEEEEETTTCCEEEEEGGGCEEC
T ss_pred             cEEEECeeEC-cCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHeEEC
Confidence            3577889996 778889999999999888877899999994 6779999999999875

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=3.5e-12  Score=74.94  Aligned_cols=55  Identities=16%  Similarity=0.300  Sum_probs=48.2

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. +..+++|+|.+||+|.+.....+|||.++.. ++.|+||++||+.+
T Consensus         9 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-g~~G~~P~~yv~~~   63 (71)
T 2dnu_A            9 EKYVTVQPYT-SQSKDEIGFEKGVTVEVIRKNLEGWWYIRYL-GKEGWAPASYLKKA   63 (71)
T ss_dssp             EEEECSSCBC-CSSTTBCCBCTTCEEEECCCCSSSEEEEEET-TEEEEEEGGGCEEC
T ss_pred             CEEEECCccC-CCCCCCCcCCCCCEEEEeECCCCCeEEEEEC-CcEEEEEHHHeEEc
Confidence            3567889995 7888899999999998888777999999988 69999999999875

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.31  E-value=3.7e-12  Score=75.99  Aligned_cols=56  Identities=20%  Similarity=0.388  Sum_probs=47.6

Q ss_pred             ccceecccccccc-CCCceeeecCcEEEEEcce-eCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIAD-GESGLSLLRDQIVIQIGDE-VDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~-~~~~l~~~~g~~v~~~~~~-~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. +. .+++|+|.+||+|.+.... .+|||.+++.+|+.|+||++||+.+
T Consensus        10 ~~~~al~dy~-~~~~~~eLs~~~Gd~i~v~~~~~~~gW~~g~~~~g~~G~~P~~yv~~~   67 (77)
T 2enm_A           10 TKARVMYDFA-AEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEIL   67 (77)
T ss_dssp             EEEEESSCCC-CCTTSSBCCCCTTCEEEEEESCCSSSEEEEECTTCCEEEEETTTEEEE
T ss_pred             cEEEECccCC-CCCCCCeecCCCCCEEEEeEccCCCCeEEEEECCCCEEEeehHHeEEC
Confidence            3577889996 66 8889999999999777664 6999999977889999999999864

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=4.1e-12  Score=74.62  Aligned_cols=55  Identities=20%  Similarity=0.204  Sum_probs=47.0

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcce---eCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDE---VDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~---~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..+++.++|. +..+++|+|.+||+|.+....   .+|||.++ .+++.|+||++||+.+
T Consensus         8 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~   65 (71)
T 2cre_A            8 LLARALYDNC-PDCSDELAFSRGDILTILEQHVPESEGWWKCL-LHGRQGLAPANRLQIL   65 (71)
T ss_dssp             EEEEESSCCC-CSSSSBCCCCSSCCEEEEESCCTTSTTEEEEE-SSSCCEEEETTTEEEC
T ss_pred             EEEEECcccC-cCCCCCCCCCCCCEEEEeEcCCCCCCCcEEEE-ECCCEEEEehHHEEEC
Confidence            3567888996 778889999999999777765   79999998 5679999999999974

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}

Probab=99.31  E-value=3.7e-12  Score=80.85  Aligned_cols=70  Identities=16%  Similarity=0.200  Sum_probs=55.2

Q ss_pred             EEcCCcEEecCCCCccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEe-CCCeEEeeecCCEEeC
Q psy6450          69 YFPSNYVIKVQPGERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRN-GENRQGVCPLKYLQEV  139 (139)
Q Consensus        69 ~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~-~~~~~G~~P~~~v~~~  139 (139)
                      .+|.............+++.++|. +..+++|+|.+||+|.+.....+|||.++. .+++.|+||++||+.+
T Consensus        14 ~~P~~~~~~~~~~~~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   84 (109)
T 2yt6_A           14 VVSSSYPTGLTGGVTIFVALYDYE-ARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPA   84 (109)
T ss_dssp             CCCCCCCSSCCSSCCEEEESSCCC-CSSTTSCCCCTTCEEEEEECSCTTCEEEEESSSCCEEEECTTTEEES
T ss_pred             eCCCCCCCCCCCCCEEEEECccCC-CCCCCccCCCCCCEEEEEEccCCCcEEEEECCCCCEEEechHHcEEC
Confidence            445544443333445678899996 778889999999999877777899999997 6779999999999864

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A

Probab=99.30  E-value=3.3e-12  Score=72.06  Aligned_cols=54  Identities=26%  Similarity=0.228  Sum_probs=45.5

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      .+++.++|. ++.+++|+|.+||+|.+.....+|||.+ ..+|+.|+||++||+.+
T Consensus         3 ~a~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~W~~g-~~~g~~G~~P~~yv~~~   56 (58)
T 4e6r_A            3 PAFVXFAYV-AEREDELSLVXGSRVTVMEXCSDGWWRG-SYNGQIGWFPSNYVLEE   56 (58)
T ss_dssp             EEEECSCBC-CCSTTBCCBCTTCEEEEEEECTTSEEEE-EETTEEEEEEGGGEEEC
T ss_pred             EEEECccCC-CCCCCEeeEeCCCEEEEeEcCCCCEEEE-EECCcEEEEehHHEEEC
Confidence            356788885 7788899999999997777777899998 55669999999999974

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=5.8e-12  Score=73.79  Aligned_cols=56  Identities=18%  Similarity=0.312  Sum_probs=47.2

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcce-eCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDE-VDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~-~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. +..+++|+|.+||+|.+.... .+|||.++..+|+.|+||++||+.+
T Consensus         8 ~~~~alydy~-~~~~~eLs~~~Gd~i~vl~~~~~~gW~~~~~~~g~~G~~P~~yv~~~   64 (70)
T 2ct4_A            8 GHCVAIYHFE-GSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLRVT   64 (70)
T ss_dssp             CEEEESSCBC-CCSTTCCCBCTTCEEEEEECCSSSCEEEEECSSSCEEEEEGGGEEEC
T ss_pred             CEEEEcccCC-CCCCCcCCCCCCCEEEEEeccCCCCeEEEEeCCCCEEEEEhHHeEEc
Confidence            3578889996 788889999999999766554 4789999988789999999999864

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=3.3e-12  Score=78.22  Aligned_cols=56  Identities=29%  Similarity=0.342  Sum_probs=48.5

Q ss_pred             CccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          82 ERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...+++.++|. ++.+++|+|.+||+|.+.....+|||.++. +++.|+||.+||+.+
T Consensus        17 ~~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~-~g~~G~~P~~yv~~~   72 (88)
T 2cub_A           17 NMPAYVKFNYM-AEREDELSLIKGTKVIVMEKCSDGWWRGSY-NGQVGWFPSNYVTEE   72 (88)
T ss_dssp             CEEEEESSCCC-CCSTTBCCCCTTEEEEEEEECTTSEEEEEE-TTEEEEEEGGGEEEC
T ss_pred             CCEEEEccccC-CCCCCCcCCCCCCEEEEEEccCCCeEEEEE-CCcEEEEehHHEEEC
Confidence            34577889996 778889999999999888777899999998 679999999999874

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}

Probab=99.30  E-value=6.2e-12  Score=73.07  Aligned_cols=57  Identities=14%  Similarity=0.232  Sum_probs=47.8

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcc-eeCCEEEEEeC-CCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGD-EVDGMVMIRNG-ENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~-~~~g~~~~~~~-~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|.....+++|+|.+||+|.+... ..+|||.++.. +++.|+||++||+.+
T Consensus         7 ~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   65 (67)
T 2kxc_A            7 QKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLL   65 (67)
T ss_dssp             CEEEESSCBCCSSCSSBCCBCTTCEEEESSSSCBTTEEEEEESSSCCEEEEEGGGEEES
T ss_pred             EEEEEeecCCCCCCCCCCcCCCCCEEEEeECCCCCCcEEEEECCCCCEEEEehHHeEEC
Confidence            4577889996337788999999999987764 78999999987 479999999999875

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.30  E-value=6.5e-12  Score=75.35  Aligned_cols=55  Identities=13%  Similarity=0.172  Sum_probs=46.8

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEccee----CCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEV----DGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~----~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..+++.++|. +..+++|+|.+||+|.+....+    +|||.++ .+++.|+||++||+.+
T Consensus        14 ~~~~Alydy~-~~~~~eLs~~~Gd~i~vl~~~~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~   72 (79)
T 1uhc_A           14 QVYFAVYTFK-ARNPNELSVSANQKLKILEFKDVTGNTEWWLAE-VNGKKGYVPSNYIRKT   72 (79)
T ss_dssp             CCEEESSCBC-CCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEE-SSSCEEEEEGGGEEEC
T ss_pred             eEEEECccCC-CCCCCccCCCCCCEEEEEECCCCCCCCCeEEEE-eCCCEEEEchHHeEEC
Confidence            3578899996 7888899999999997777665    8999997 5679999999999874

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.30  E-value=4e-12  Score=76.39  Aligned_cols=55  Identities=9%  Similarity=0.227  Sum_probs=47.2

Q ss_pred             cceeccccccccCCC-ceeeecCcEEEEEcceeC-----CEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGES-GLSLLRDQIVIQIGDEVD-----GMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~-~l~~~~g~~v~~~~~~~~-----g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      .+++.++|. +..++ +|+|.+||+|.+.....+     |||.++..+|+.|+||++||+.+
T Consensus        16 ~~~alydy~-~~~~~~eLs~~~Gd~i~v~~~~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   76 (80)
T 2v1r_A           16 FARALYDFV-PENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   76 (80)
T ss_dssp             EEEESSCBC-CSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC
T ss_pred             EEEECccCC-CCCCCCEecCCCCCEEEEEECCCCCCCCCCcEEEEeCCCCeEEEEHHHeEEc
Confidence            567889996 67777 999999999977776655     99999987789999999999975

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=99.30  E-value=3.8e-12  Score=74.21  Aligned_cols=55  Identities=20%  Similarity=0.338  Sum_probs=47.5

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. +..+++|+|.+||+|.+.....+|||.++. +|+.|+||++||+.+
T Consensus         8 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~~P~~yv~~~   62 (68)
T 1wi7_A            8 RRCQVAFSYL-PQNDDELELKVGDIIEVVGEVEEGWWEGVL-NGKTGMFPSNFIKEL   62 (68)
T ss_dssp             CCEEESSCBC-CSSTTBCCBCTTCEECCCEEEETTEEEECS-TTCCEEEETTSEEEC
T ss_pred             CEEEECccCC-cCCCCCccCcCCCEEEEEEcCCCCeEEEEE-CCcEEEEchHHEEEC
Confidence            4578889996 778889999999999777777899999885 679999999999975

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=7.5e-12  Score=76.10  Aligned_cols=55  Identities=18%  Similarity=0.153  Sum_probs=47.2

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcc--eeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGD--EVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~--~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..+++.++|. +..+++|+|.+||+|.+...  ..+|||.++. +|+.|+||++||+.+
T Consensus         9 ~~~~al~dy~-~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~-~g~~G~fP~~yv~~~   65 (85)
T 2dlp_A            9 GYVIALRSYI-TDNCSLLSFHRGDLIKLLPVATLEPGWQFGSA-GGRSGLFPADIVQPA   65 (85)
T ss_dssp             CEEEESSCBC-CSSSSBCCBCTTCEEEECCCSCCCTTEEEEES-SSCEEEEETTSEEEC
T ss_pred             EEEEECCCCC-ccCcCCccCcCCCEEEEEEccCCCCCeEEEEE-CCEEEEechHHeEEC
Confidence            3567889996 77888999999999987765  7899998887 569999999999875

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=4.8e-12  Score=75.24  Aligned_cols=55  Identities=13%  Similarity=0.129  Sum_probs=46.7

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeC---CCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNG---ENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~---~~~~G~~P~~~v~~~  139 (139)
                      ..+++.++|. ++ +++|+|.+||+|.+.....+|||.++..   +++.|+||++||+.+
T Consensus        11 ~~~~alydy~-~~-~~eLs~~~Gd~i~vl~~~~~gWw~g~~~~~~~g~~G~~P~~yv~~~   68 (75)
T 2egc_A           11 DVYVSIADYE-GD-EETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKK   68 (75)
T ss_dssp             EEEEECSCBC-CC-SSSCCBCTTCEEEECEECTTSEEEEEECCSSSCEEEEEEGGGEEEC
T ss_pred             eEEEECCCcC-CC-CCcCCCCCCCEEEEEEcCCCCeEEEEeCCCCCCcEEEEehHHCEEC
Confidence            3567889996 56 8899999999998777778999999986   368999999999974

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.29  E-value=5.1e-12  Score=78.13  Aligned_cols=55  Identities=13%  Similarity=0.164  Sum_probs=46.6

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcce--eCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDE--VDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~--~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. ++.+++|+|.+||+|.+....  .+|||.++. +|+.|+||.+||+.+
T Consensus         6 ~~~~Alydy~-a~~~~eLsf~~Gd~i~v~~~~~~~~gWw~g~~-~g~~G~~P~~yv~~~   62 (93)
T 1uff_A            6 SGYRALYPFE-ARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSF-QGNFGWFPCNYVEKM   62 (93)
T ss_dssp             CCEEESSCBC-CCSSSCCCBCTTCEEEECSSCCCSSSEEEEEE-TTEEEEEETTTEEEC
T ss_pred             EEEEECccCC-CCCCCCcCCCCCCEEEEeEccCCCCCEEEEEE-CCCEEEechHHeEEc
Confidence            3567889996 788889999999999877664  689999985 569999999999975

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}

Probab=99.29  E-value=4.4e-12  Score=74.35  Aligned_cols=54  Identities=17%  Similarity=0.225  Sum_probs=44.5

Q ss_pred             cceeccccccccCC--CceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGE--SGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~--~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..++.++|. +..+  .+|+|.+||+|.+... .+|||.++..+|+.|+||++||+.+
T Consensus         7 ~~~alydy~-~~~~~~~eLsf~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~~   62 (70)
T 2vkn_A            7 KAKALYPYD-ADDDDAYEISFEQNEILQVSDI-EGRWWKARRANGETGIIPSNYVQLI   62 (70)
T ss_dssp             EEEESSCBC-CCSSSTTBCCBCTTCEEEEECT-TSSEEEEECTTSCEEEEEGGGEEEE
T ss_pred             EEEECccCC-CCCCCCCcccCCCCCEEEEEEc-CCCeEEEEECCCCEEEEehHHEEEC
Confidence            467788886 5544  4899999999976665 6899999988889999999999863

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.29  E-value=6.9e-12  Score=73.88  Aligned_cols=57  Identities=14%  Similarity=0.233  Sum_probs=47.8

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcc-eeCCEEEEEeC-CCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGD-EVDGMVMIRNG-ENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~-~~~g~~~~~~~-~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|.....+++|+|.+||+|.+... ..+|||.++.. +++.|+||++||+.+
T Consensus         8 ~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~   66 (72)
T 1spk_A            8 QKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLL   66 (72)
T ss_dssp             CEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEEC
T ss_pred             eEEEEeeeeCCCCCCCCCcCCCCCEEEEeEccCCCCcEEEEECCCCCEEEEehHHeEEC
Confidence            4577889996337788999999999987765 78999999987 479999999999875

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=2.1e-12  Score=76.00  Aligned_cols=56  Identities=20%  Similarity=0.322  Sum_probs=47.8

Q ss_pred             ccceeccccccc-cCCCceeeecCcEEEEEcceeCCEEEEEe-CCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIA-DGESGLSLLRDQIVIQIGDEVDGMVMIRN-GENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~-~~~~~l~~~~g~~v~~~~~~~~g~~~~~~-~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. + +.+++|+|.+||+|.+....++|||.+++ .+|+.|+||++||+.+
T Consensus         8 ~~~~Alydy~-~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~   65 (71)
T 2gqi_A            8 RRVRAILPYT-KVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEV   65 (71)
T ss_dssp             CCEEESSCCC-CCTTSSCCCCCTTCBCCCCEECSSSCEEEECTTTCCEEEECTTSEEEC
T ss_pred             CEEEECcccC-CCCCCCCCCCCCCCEEEEEEecCCCEEEEEECCCCCEEEeeHHHEEEC
Confidence            4678899996 6 78889999999999777777789999983 6679999999999875

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1

Probab=99.29  E-value=5.4e-12  Score=74.48  Aligned_cols=56  Identities=13%  Similarity=0.283  Sum_probs=47.8

Q ss_pred             CccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          82 ERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ....++.++|. +..+++|+|.+||+|.+.....+|||.++. +++.|+||++||+.+
T Consensus         5 ~~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~~P~~yv~~~   60 (73)
T 3thk_A            5 KELVLALYDYQ-EKSPREVTMKKGDILTLLNSTNKDWWKVEV-NDRQGFVPAAYVKKL   60 (73)
T ss_dssp             CCEEEECSCBC-CCSTTBCCBCTTCEEEEEECCSSSEEEEEE-TTEEEEEEGGGEEEC
T ss_pred             CEEEEECcCCC-cCCCCccCCCCCCEEEEEECCCCCeEEEEE-CCcEEEEehHHeEEC
Confidence            34577889995 778889999999999888777899999985 469999999999875

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=99.29  E-value=5.7e-12  Score=98.04  Aligned_cols=60  Identities=23%  Similarity=0.524  Sum_probs=55.2

Q ss_pred             CccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        22 ~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      +...++|+|+|.++.+++|+|++||+|.|++..+++||.|+.+|+.||||++||+.+...
T Consensus        29 ~~~~~~al~~~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   88 (466)
T 2pz1_A           29 SVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVNQ   88 (466)
T ss_dssp             CCEEEEESSCBCCCCTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECSCC
T ss_pred             CccEEEEccccCCCCCCcCCCCCCCEEEEEEecCCCEEEEEECCcEEEEehhHeeeccCc
Confidence            345699999999999999999999999999998899999999999999999999987654

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}

Probab=99.29  E-value=7.2e-12  Score=73.99  Aligned_cols=55  Identities=20%  Similarity=0.263  Sum_probs=46.7

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcce--eCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDE--VDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~--~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. +..+++|+|.+||+|.+....  .+|||.++. +|+.|+||++||+.+
T Consensus        10 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~~~   66 (73)
T 2k9g_A           10 DYCKVIFPYE-AQNDDELTIKEGDIVTLINKDCIDVGWWEGEL-NGRRGVFPDNFVKLL   66 (73)
T ss_dssp             EEEEECSCBC-CSSTTBCCBCTTCEEEEEECCSSSTTEEEEEE-TTEEEEEEGGGEEEC
T ss_pred             cEEEECccCC-CCCCCeeeECCCCEEEEEECCCCCCCEEEEEE-CCeEEEEchHHEEEC
Confidence            3567889996 778889999999999777664  789999986 669999999999875

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=5.7e-12  Score=73.46  Aligned_cols=55  Identities=18%  Similarity=0.355  Sum_probs=46.8

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. ++.+++|+|.+||+|.+.....+|||.++. +++.|+||++||+.+
T Consensus         8 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~~P~~yv~~~   62 (68)
T 2dmo_A            8 EAHRVLFGFV-PETKEELQVMPGNIVFVLKKGNDNWATVMF-NGQKGLVPCNYLEPV   62 (68)
T ss_dssp             EEEEECSSCC-CCSSSSCCCCTTCEEEECEECSSSCEEEEE-TTEEEEECSTTEEEC
T ss_pred             CEEEECcCCC-cCCcCCCCCCCCCEEEEEEeCCCCEEEEEe-CCCEEEeehHHeEEC
Confidence            3567889996 778889999999999877777789998865 569999999999975

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.29  E-value=5.4e-12  Score=73.92  Aligned_cols=55  Identities=20%  Similarity=0.263  Sum_probs=46.5

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcce--eCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDE--VDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~--~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. ++.+++|+|.+||+|.+....  .+|||.++. +|+.|+||++||+.+
T Consensus         8 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~~~   64 (70)
T 2da9_A            8 DYCKVIFPYE-AQNDDELTIKEGDIVTLINKDCIDVGWWEGEL-NGRRGVFPDNFVKLL   64 (70)
T ss_dssp             EEEEECSCCC-CSSTTBCCCCTTEEEEEEECCCSSTTEEEEEC-SSCEEEEEGGGEEEC
T ss_pred             cEEEECcCCC-CCCcCEeeEcCCCEEEEEECCCCCCCeEEEEE-CCcEEEechHHeEEC
Confidence            3567889996 778889999999999776654  789999986 679999999999875

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=4.7e-12  Score=75.99  Aligned_cols=55  Identities=15%  Similarity=0.280  Sum_probs=47.6

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeC-CCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNG-ENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~-~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. +..+++|+|.+||+|.+... .+|||.++.. +++.|+||++||+.+
T Consensus        18 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~-~~gW~~g~~~~~g~~G~fP~~yv~~~   73 (79)
T 1x6b_A           18 PQVEITKAFF-AKQADEVTLQQADVVLVLQQ-EDGWLYGERLRDGETGWFPEDFARFI   73 (79)
T ss_dssp             CEEEESSCCC-CCSSSBCCCCTTEEEEEEEE-ETTEEEEEETTTCCEEEECGGGCEEE
T ss_pred             CEEEECeeEC-CCCcCCcCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEchHHEEEC
Confidence            4678889996 77888999999999977776 8999999985 679999999999864

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}

Probab=99.29  E-value=4.1e-12  Score=73.88  Aligned_cols=56  Identities=14%  Similarity=0.141  Sum_probs=46.5

Q ss_pred             Cccceecccccccc--CCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          82 ERPLQVTHNLQIAD--GESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        82 ~~~~~~~~~~~~~~--~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ....++.++|. +.  ..++|+|.+||+|.+.....+|||.++. +|+.|+||++||+.+
T Consensus         6 ~~~~~alydy~-~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~-~g~~G~fP~~yv~~~   63 (67)
T 2eyx_A            6 PIYARVIQKRV-PNAYDKTALALEVGELVKVTKINVSGQWEGEC-NGKRGHFPFTHVRLL   63 (67)
T ss_dssp             SCBEEECCCBC-CCTTCSSBCCBCSSEEEEEEEECTTSEEEEEE-TTEEEEEEGGGBCCB
T ss_pred             CEEEEEeEEEC-CCCCCCCccccCCCCEEEEEEecCCCEEEEEE-CCCEEEEehHhEEEc
Confidence            34678889996 55  6779999999999877777899999866 569999999999864

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=6.5e-12  Score=75.54  Aligned_cols=54  Identities=20%  Similarity=0.208  Sum_probs=46.8

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..++.++|. +..+++|+|.+||+|.+.....+|||.++.. ++.|+||++||+.+
T Consensus        10 ~~~al~dy~-~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~-g~~G~~P~~yv~~~   63 (80)
T 2ekh_A           10 SYMTCSAYQ-KVQDSEISFPAGVEVQVLEKQESGWWYVRFG-ELEGWAPSHYLVLD   63 (80)
T ss_dssp             EEEECSCBC-CSSTTSCCBCTTCEEEEEEECTTSEEEEEET-TEEEEEETTTEECC
T ss_pred             EEEECCCCC-CCCCCccCcCCCCEEEEEEeCCCCeEEEEEC-CCEEEEEhHHeEEC
Confidence            567889996 7888899999999997777777999999875 69999999999864

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}

Probab=99.28  E-value=5.2e-12  Score=73.79  Aligned_cols=55  Identities=20%  Similarity=0.325  Sum_probs=47.6

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. +..+++|+|.+||+|.+.....+|||.++.. ++.|+||++||+.+
T Consensus         9 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-g~~G~~P~~yv~~~   63 (69)
T 2dil_A            9 QEYRALYDYT-AQNPDELDLSAGDILEVILEGEDGWWTVERN-GQRGFVPGSYLEKL   63 (69)
T ss_dssp             CEEECCSCBC-CSSSSSCCBCTTCEEEEEECCSSSEEEEEET-TEEEEEEGGGCCBC
T ss_pred             cEEEECccCC-ccCcCccCCCCCCEEEEEECCCCCEEEEEEC-CCEEEEehHHeEEc
Confidence            3567889996 7788899999999998887778999999986 69999999999864

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A

Probab=99.28  E-value=8.8e-12  Score=71.42  Aligned_cols=56  Identities=20%  Similarity=0.322  Sum_probs=45.3

Q ss_pred             CccceeccccccccCCCceeeecCcEEEEEc-ceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          82 ERPLQVTHNLQIADGESGLSLLRDQIVIQIG-DEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~-~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ....++.++|. +..+++|+|.+||+|.+.. ....+||.++. +|+.|+||++||+.+
T Consensus         5 ~~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~~-~g~~G~~P~~yv~~~   61 (63)
T 3eg3_A            5 PNLFVALYDFV-ASGDNTLSITKGEKLRVLGYNHNGEWCEAQT-KNGQGWVPSAYITPV   61 (63)
T ss_dssp             TTEEEESSCBC-CCSSSBCCBCTTCEEEEEEECTTSSEEEEEE-TTEEEEEEGGGEEES
T ss_pred             CEEEEEcceEC-CCCCCccCCCCCCEEEEEEeCCCCCeEEEEE-CCCeEEEehHHeEEC
Confidence            34578889995 7888899999999997665 33456888887 669999999999875

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=7.3e-12  Score=72.96  Aligned_cols=55  Identities=15%  Similarity=0.169  Sum_probs=47.2

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. ++.+++|+|.+||+|.+.....+|||.++. +++.|+||++||+.+
T Consensus         8 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~~P~~yv~~~   62 (68)
T 1x2p_A            8 EEFVAIADYA-ATDETQLSFLRGEKILILRQTTADWWWGER-AGCCGYIPANHVGKH   62 (68)
T ss_dssp             CEEEESSCCC-CSSTTBCCCCTTCEEEEEECCSSSEEEEEC-TTCCEEEESSSEECC
T ss_pred             CEEEECceEC-CCCcCCcCCCCCCEEEEEEcCCCCEEEEEE-CCeEEEEehHHeEEC
Confidence            4577889996 778889999999999887777899999986 569999999999864

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=5.3e-12  Score=74.58  Aligned_cols=54  Identities=19%  Similarity=0.250  Sum_probs=45.6

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcc---eeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGD---EVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~---~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      .+++.++|. ++.+++|+|.+||+|.+...   ..+|||.++ .+|+.|+||++||+.+
T Consensus        10 ~~~alydy~-~~~~~eLsf~~Gd~i~v~~~~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~   66 (73)
T 2dl7_A           10 FVKALYDYE-GQTDDELSFPEGAIIRILNKENQDDDGFWEGE-FNGRIGVFPSVLVEEL   66 (73)
T ss_dssp             EEEESSCBC-CSSTTBCCBCTTCEEEEEECCCSSSSSCEEEE-ETTEEEEECSSSEEEC
T ss_pred             EEEECccCC-cCCCCcCCCCCCCEEEEEECCCCCCCCcEEEE-ECCCEEEEChHHEEEC
Confidence            567889996 77888999999999977665   478999998 4669999999999975

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1

Probab=99.28  E-value=5.1e-12  Score=76.59  Aligned_cols=55  Identities=13%  Similarity=0.274  Sum_probs=47.0

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..+++.++|. +..+++|+|.+||+|.+.....+|||.++ .+|+.|+||++||+.+
T Consensus        18 ~~~~Alydy~-a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~-~~g~~G~~P~~yv~~~   72 (83)
T 1neg_A           18 ELVLALYDYQ-EKSPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKKL   72 (83)
T ss_dssp             CEEEESSCBC-CSSTTBCCBCTTCEEEEEECCSSSEEEEE-ETTEEEEEEGGGEEEC
T ss_pred             eEEEEccccC-CCCCCccccCCCCEEEEEEecCCCEEEEE-ECCeEEEEEHHHEEEC
Confidence            3577889996 78888999999999988877778999995 5669999999999874

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}

Probab=99.28  E-value=4.6e-12  Score=77.26  Aligned_cols=53  Identities=19%  Similarity=0.353  Sum_probs=45.9

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQE  138 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~  138 (139)
                      ..++.++|. +..+++|+|.+||+|.+..+ .+|||.++..+|+.|+||++||+.
T Consensus        33 ~~~alydy~-~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~   85 (86)
T 2jxb_A           33 IVIAKWDYT-AQQDQELDIKKNERLWLLDD-SKTWWRVRNAANRTGYVPSNYVER   85 (86)
T ss_dssp             EEEESSCCC-CCSSSBCCCCTTEEEEEEEC-CSSEEEEECTTSCEEEEEGGGBCC
T ss_pred             EEEECccCC-CCCCCEeccCCCCEEEEEec-CCCeEEEEECCCCEEEeehHHEEe
Confidence            577889996 77888999999999976665 689999997788999999999974

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}

Probab=99.28  E-value=4.8e-12  Score=76.14  Aligned_cols=55  Identities=13%  Similarity=0.211  Sum_probs=45.7

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCC-EEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDG-MVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g-~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. ++.+++|+|.+||+|.+....++| ||.++. +|+.|+||++||+.+
T Consensus        11 ~~~~alydy~-~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~-~g~~G~fP~~yv~~~   66 (80)
T 2i0n_A           11 KYARALKDYN-VSDTSLLPFKRNDIITITFKDQENKWFMGQL-NGKEGSFPVDHVEIL   66 (80)
T ss_dssp             CEEEESSCBC-CCSSSSCCBCSSEEEEEEEESSSSSEEEEEE-TTEEEEEEGGGEEEE
T ss_pred             eEEEECCCCC-cCCCCCcCCCCCCEEEEEEecCCCCEEEEEE-CCcEEEechHHEEEC
Confidence            4567889996 788889999999999777665666 998885 569999999999864

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A

Probab=99.28  E-value=7.8e-12  Score=72.87  Aligned_cols=55  Identities=18%  Similarity=0.208  Sum_probs=46.9

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeC-CC---eEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNG-EN---RQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~-~~---~~G~~P~~~v~~~  139 (139)
                      ..++.++|. ++.+++|+|.+||+|.+.....+|||.++.. ++   +.|+||++||+.+
T Consensus         9 ~~~Alydy~-~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~~~~G~fP~~yv~~~   67 (68)
T 1tg0_A            9 KVVAQFPYK-SDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAVQ   67 (68)
T ss_dssp             EEEESSCBC-CSCTTBCCBCTTCEEEEEEECSSSEEEEEEECTTSCEEEEEEEGGGEEEC
T ss_pred             EEEECeeEC-cCCcCCCCCCCCCEEEEEEecCCCeEEEEECCCCCCCEEEEEchHHEEEC
Confidence            578889996 7788899999999998777778999998854 35   8999999999874

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...

Probab=99.28  E-value=7.5e-12  Score=76.00  Aligned_cols=56  Identities=14%  Similarity=0.110  Sum_probs=48.3

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEe-CCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRN-GENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~-~~~~~G~~P~~~v~~~  139 (139)
                      ..+++.++|. +..+++|+|.+||+|.+....++|||.++. .+|+.|+||++||+.+
T Consensus         7 ~~~~Alydy~-a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   63 (84)
T 4ag1_C            7 TLFVALYDYN-ATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPV   63 (84)
T ss_dssp             CEEEESSCBC-CSBTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEET
T ss_pred             EEEEEcccCC-CCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEEC
Confidence            3567888995 778889999999999888777899999998 4779999999999874

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}

Probab=99.27  E-value=4e-12  Score=76.05  Aligned_cols=52  Identities=27%  Similarity=0.503  Sum_probs=46.7

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECC--CCCeeEEEE----CCeEEEEcCCcE
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTS--DQNWWKGKC----MGRVGYFPSNYV   75 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~--~~~w~~~~~----~g~~G~~P~~~v   75 (139)
                      ..++++|+|.+...+||+|++|+.+.|+++.  +++||.++.    .+++|+||.+|+
T Consensus        18 e~~valydF~Ar~~~ELS~~kGd~vevle~~~~~peW~lvr~~~~~~~qeGlVPsnyl   75 (82)
T 1u3o_A           18 ELTVVLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTERSPPQEGLVPSSTL   75 (82)
T ss_dssp             EEEECSSCBCCCSTTCCCBCTTCEEEESSCTTSSTTEEEEEESSSSSCEEEEEEGGGS
T ss_pred             eEEEEEeeecCCCCCeeeEcCCCEEEEEecCCCCCCEEEEEECCCCCCcEeeccccEE
Confidence            4589999999999999999999999999876  379999997    247899999998

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A

Probab=99.27  E-value=5.7e-12  Score=72.67  Aligned_cols=55  Identities=13%  Similarity=0.264  Sum_probs=46.8

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeC---C----CeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNG---E----NRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~---~----~~~G~~P~~~v~~~  139 (139)
                      ..++.++|. +..+++|+|.+||+|.+.....+|||.++..   +    ++.|+||++||+.+
T Consensus         3 ~~~alydy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~g~~~g~~G~~P~~yv~~l   64 (65)
T 2oaw_A            3 LVLALYDYQ-EKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKL   64 (65)
T ss_dssp             EEEECSCBC-CSSTTBCCBCTTCEEEEEECCSSSEEEEEEEEEETTEEEEEEEEEEGGGEEEC
T ss_pred             EEEEcccCC-ccCCCCCCCCCCCEEEEEEcCCCCEEEEEEccccCCCcCCcEEEEchHHeEEc
Confidence            457888996 7788899999999998887778999999876   2    68999999999975

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=5.7e-12  Score=75.76  Aligned_cols=54  Identities=9%  Similarity=0.114  Sum_probs=46.0

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEccee--CCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEV--DGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~--~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..++.++|. +..+++|+|.+||+|.+.....  +|||.++. +++.|+||++||+.+
T Consensus        19 ~~~al~dy~-~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~-~g~~G~~P~~yv~~~   74 (80)
T 2d8h_A           19 EVTALYSFE-GQQPGDLNFQAGDRITVISKTDSHFDWWEGKL-RGQTGIFPANYVTMN   74 (80)
T ss_dssp             EEECSSCEE-CSSTTBCEECTTCEEEEEECCSCSSSEEEEEE-TTEEEEEEGGGCCBC
T ss_pred             EEEECccCC-cCCCCeeeEcCCCEEEEeECcCCCCCeEEEEE-CCEEEEEchhHeEEc
Confidence            567889996 7788899999999997776654  89999999 679999999999864

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=99.27  E-value=1.1e-11  Score=73.15  Aligned_cols=54  Identities=13%  Similarity=0.252  Sum_probs=46.6

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQE  138 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~  138 (139)
                      ..+++.++|. ++.+++|+|.+||+|.+.....+|||.++..+ +.|+||++||+.
T Consensus        18 ~~~~Alydy~-a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~~g-~~G~fP~~yV~~   71 (72)
T 2l0a_A           18 RKVRAIYDFE-AAEDNELTFKAGEIITVLDDSDPNWWKGETHQ-GIGLFPSNFVTA   71 (72)
T ss_dssp             EEEEESSCBC-CSSTTBCCBCTTCEEEEEEEEETTEEEEECSS-CEEECTTCCEEE
T ss_pred             eEEEECCccC-CCCCCccCCCCCCEEEEEEecCCCEEEEEECC-CEEEechhhCcc
Confidence            3577889996 77888999999999988887889999998764 899999999984

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A

Probab=99.27  E-value=7.5e-12  Score=77.14  Aligned_cols=55  Identities=9%  Similarity=0.227  Sum_probs=47.2

Q ss_pred             cceeccccccccCCC-ceeeecCcEEEEEcceeC-----CEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGES-GLSLLRDQIVIQIGDEVD-----GMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~-~l~~~~g~~v~~~~~~~~-----g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      .+++.++|. +..++ +|+|.+||+|.+.....+     |||.++..+|+.|+||++||+.+
T Consensus        16 ~~~alydy~-~~~~~~eLsf~~Gd~i~v~~~~~~~~~~~gWw~g~~~~g~~G~~P~~yv~~~   76 (92)
T 1jqq_A           16 FARALYDFV-PENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   76 (92)
T ss_dssp             EEEESSBBC-CSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEEETTSCEEEEEGGGEEEC
T ss_pred             EEEECccCC-CCCCCCCcCCCCCCEEEEEECCCCCCCCCCCeEEEeCCCCEEEEehHHeEEC
Confidence            577889996 77777 999999999977776655     99999987789999999999875

>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}

Probab=99.26  E-value=5.5e-12  Score=74.17  Aligned_cols=55  Identities=15%  Similarity=0.130  Sum_probs=47.1

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. ++.+++|+|.+||+|.+.....+|||.++. +|+.|+||++||+.+
T Consensus        14 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~-~g~~G~~P~~yv~~~   68 (72)
T 4glm_A           14 TYGVALYRFQ-ALEPNELDFEVGDKIRILATLEDGWLEGSL-KGRTGIFPYRFVKLC   68 (72)
T ss_dssp             CEEEESSCBC-CCSTTBCCBCTTCEEEEEEECSTTEEEEEE-TTEEEEEEGGGEEEE
T ss_pred             eEEEECccCC-CCCCCcCCCCCCCEEEEEEccCCCEEEEEE-CCcEEEEChHHeEEC
Confidence            3577889995 778889999999999878777899999984 669999999999864

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.26  E-value=8.4e-12  Score=76.58  Aligned_cols=54  Identities=22%  Similarity=0.323  Sum_probs=46.9

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcce-----eCCEEEEEeCCCeEEeeecCCEE
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDE-----VDGMVMIRNGENRQGVCPLKYLQ  137 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~-----~~g~~~~~~~~~~~G~~P~~~v~  137 (139)
                      ...++.++|. ++.+++|+|.+||+|.+....     .+|||.++..+|+.|+||++||+
T Consensus        30 ~~~~Alydy~-a~~~~ELsf~~GD~I~Vl~~~~~~~~~~gWw~g~~~~g~~G~fP~nyV~   88 (89)
T 2rf0_A           30 PVWTAVFDYE-AAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVA   88 (89)
T ss_dssp             CEEEECSCBC-CSSTTBCCBCTTCEEEEEECCHHHHSSTTEEEEECTTCCEEEEEGGGEE
T ss_pred             cEEEECCccC-CCCCCccccCCCCEEEEEeccCCcccCCCEEEEEECCCCEEEEcHHHCc
Confidence            4678889996 788889999999999777664     79999999877899999999997

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}

Probab=99.26  E-value=4.2e-12  Score=76.96  Aligned_cols=57  Identities=14%  Similarity=0.173  Sum_probs=48.1

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCC-----CeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGE-----NRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~-----~~~G~~P~~~v~~~  139 (139)
                      ..+++.++|..++..++|+|.+||+|.+.....+|||.++..+     ++.|+||++||+.+
T Consensus        19 ~~~~Alydy~~a~~~~eLsf~~GDiI~V~~~~~~gWw~G~~~~~~~~tg~~G~fPsnyV~~~   80 (83)
T 2ke9_A           19 LKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEVV   80 (83)
T ss_dssp             EEEEESSCBCCCSCTTBCCBCTTCEEEESCSSCSSCEEEEECCSSTTSCCCEEECGGGEESS
T ss_pred             eEEEEccccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCCCCCEEEechHHEEEC
Confidence            3577888994377788999999999988888889999999764     68999999999864

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A

Probab=99.26  E-value=8.8e-12  Score=72.44  Aligned_cols=54  Identities=15%  Similarity=0.146  Sum_probs=45.2

Q ss_pred             cceecccccccc--CCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIAD--GESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~--~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..++.++|. ++  ..++|+|.+||+|.+.....+|||.++. +|+.|+||++||+.+
T Consensus         3 ~~~al~dy~-~~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~fP~~yv~~~   58 (67)
T 2bzy_A            3 FAKAIQKRV-PCAYDKTALALEVGDIVKVTRMNINGQWEGEV-NGRKGLFPFTHVKIF   58 (67)
T ss_dssp             EEEECSCBC-SEEECTTBCCBCTTCEEEEEEECSSSEEEEEE-TTEEEEEEGGGEEEC
T ss_pred             EEEEeeeEC-CCCCCCCccccCCCCEEEEEEecCCCeEEEEe-CCcEEEEehHHeEEC
Confidence            356788886 55  7789999999999887777899998865 569999999999875

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}

Probab=99.26  E-value=7.6e-12  Score=73.94  Aligned_cols=52  Identities=15%  Similarity=0.301  Sum_probs=44.7

Q ss_pred             ceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          85 LQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        85 ~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      .++.++|. + .+++|+|.+||+|.+.....+|||.++ .+|+.|+||++||+.+
T Consensus         3 a~alydy~-~-~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~   54 (73)
T 2kxd_A            3 APPLPPYS-A-GGREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKKL   54 (73)
T ss_dssp             CCCCCSSC-C-CSCCCCBCTTCEEEEEECCSSSEEEEE-ETTEEEEEEGGGEEEC
T ss_pred             EEEeeeeC-C-CCCEeeEcCCCEEEEEEecCCCEEEEE-ECCCEEEEehHHeEEc
Confidence            56788886 5 788999999999988877789999997 4569999999999874

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.26  E-value=1.2e-11  Score=74.28  Aligned_cols=55  Identities=22%  Similarity=0.244  Sum_probs=47.1

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCC----CeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGE----NRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~----~~~G~~P~~~v~~~  139 (139)
                      ..++.++|. ++.+++|+|.+||+|.+.....+|||.++..+    ++.|+||++||+.+
T Consensus         9 ~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~~~~G~fP~~yv~~~   67 (80)
T 1ue9_A            9 IAQVTSAYV-ASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLL   67 (80)
T ss_dssp             EEEECSCCC-CCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEEC
T ss_pred             EEEECcccC-CCCCCCCCCCCCCEEEEEEecCCCcEEEEECCCCCCCcEEEEchHHeEEC
Confidence            467888995 77888999999999987777779999999774    48999999999875

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.26  E-value=6.7e-12  Score=74.73  Aligned_cols=55  Identities=22%  Similarity=0.293  Sum_probs=47.5

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. ++.+++|+|.+||+|.+.....+|||.++. +|+.|+||++||+.+
T Consensus        11 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~~P~~yv~~~   65 (76)
T 1ujy_A           11 LIVKARFNFK-QTNEDELSVCKGDIIYVTRVEEGGWWEGTL-NGRTGWFPSNYVREI   65 (76)
T ss_dssp             EEEECCSCBC-CSSTTSCCBCSSCCEEESSCCSSSCEEEEE-TTEEEEECTTTSEEC
T ss_pred             EEEEECccCC-cCCCCcccCCCCCEEEEEEecCCCEEEEEE-CCCEEEechHHEEEC
Confidence            3567888996 778889999999999888877899999987 669999999999875

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.26  E-value=5.5e-12  Score=74.36  Aligned_cols=55  Identities=16%  Similarity=0.236  Sum_probs=46.0

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEc-ceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIG-DEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~-~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. ++.+++|+|.+||+|.+.. ...+|||.++ .+|+.|+||++||+.+
T Consensus        11 ~~~~alydy~-~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~   66 (72)
T 1ugv_A           11 RKAKALYACK-AEHDSELSFTAGTVFDNVHPSQEPGWLEGT-LNGKTGLIPENYVEFL   66 (72)
T ss_dssp             CCEEESSCBC-CCSSSBCCBCTTCEEBSCCBCSSTTEEEEE-SSSCEEEEEGGGEEEC
T ss_pred             cEEEEccccC-CcCCCEeCCcCCCEEEEEEecCCCCeEEEE-ECCcEEEecHHHEEEC
Confidence            3578889996 7788899999999996555 4668999887 5679999999999975

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=7.5e-12  Score=75.04  Aligned_cols=55  Identities=24%  Similarity=0.331  Sum_probs=47.0

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. +..+++|+|.+||+|.+.....+|||.++ .+++.|+||.+||+.+
T Consensus         8 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~   62 (79)
T 2yun_A            8 RLCKALYSFQ-ARQDDELNLEKGDIVIIHEKKEEGWWFGS-LNGKKGHFPAAYVEEL   62 (79)
T ss_dssp             EEEEESSCBC-CSSTTBCCBCTTCEEEEEECCSSSCEEEE-SSSCEEEECSTTEEEE
T ss_pred             CEEEECccCC-cCCCCCcCCCCCCEEEEEEcCCCCEEEEE-ECCCEEEEEhHHeEEC
Confidence            3567888996 77888999999999988877778999998 4679999999999864

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.26  E-value=1e-11  Score=74.04  Aligned_cols=56  Identities=20%  Similarity=0.242  Sum_probs=48.2

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCC--CeE------EeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGE--NRQ------GVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~--~~~------G~~P~~~v~~~  139 (139)
                      ...++.++|. +..+++|+|.+||+|.+.....+|||.++..+  ++.      |+||++||+.+
T Consensus         8 ~~~~alydy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~~~~~~~G~~P~~yv~~~   71 (77)
T 2d8j_A            8 QYFVALFDYQ-ARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAED   71 (77)
T ss_dssp             EEEEESSCBC-CSSSSBCCBCTTCCEEEEECCSSSEEEEEECSSCCSSCCCCSEEEEETTTEEEC
T ss_pred             CEEEEccCCC-CCCCCccCCCCCCEEEEEECCCCCeEEEEECCCCCcCcccCCceEECHHHeeEc
Confidence            3577889996 77888999999999988877789999999885  677      99999999874

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=1.2e-11  Score=73.09  Aligned_cols=55  Identities=22%  Similarity=0.178  Sum_probs=46.4

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcce--eCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDE--VDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~--~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. ++.+++|+|.+||+|.+....  ++|||.++. +++.|+||++||+.+
T Consensus         8 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~-~g~~G~~P~~yv~~~   64 (73)
T 2dm1_A            8 GTAVARYNFA-ARDMRELSLREGDVVRIYSRIGGDQGWWKGET-NGRIGWFPSTYVEEE   64 (73)
T ss_dssp             SEEEESSCBC-CCSTTBCCBCTTCEEECCBSSSSSSSCEEEEE-TTEEEEECSSSEEEC
T ss_pred             CEEEECccCC-cCCCCcCCCCCCCEEEEEEecCCCCCeEEEEE-CCeEEEeehHHEEEc
Confidence            4578889996 778889999999999877665  459999986 669999999999874

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=7e-12  Score=77.03  Aligned_cols=55  Identities=22%  Similarity=0.227  Sum_probs=47.7

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeC-CCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNG-ENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~-~~~~G~~P~~~v~~~  139 (139)
                      .+++.++|. +..+++|+|.+||+|.+.....+|||.++.. +++.|+||++||+.+
T Consensus        19 ~~~alydy~-~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~   74 (90)
T 2yup_A           19 EAVAQYTFK-GDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVS   74 (90)
T ss_dssp             EEEECSCCC-CCSSSBCCCCTTCEEEESSCCCSSEEEEECTTTCCEEEEEGGGEEEE
T ss_pred             EEEEeecCC-cCCcCcCCCCCCCEEEEEEEcCCCeEEEEECCCCCEEEEehHHeEEc
Confidence            467889996 7788899999999998888778999999985 479999999999864

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.25  E-value=3.9e-12  Score=79.15  Aligned_cols=55  Identities=15%  Similarity=0.150  Sum_probs=47.2

Q ss_pred             cceeccccccccC------CCceeeecCcEEEEE-cceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADG------ESGLSLLRDQIVIQI-GDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~------~~~l~~~~g~~v~~~-~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      .+++.++|. ++.      +++|+|.+||+|.+. ....+|||.++..+|+.|+||++||+.+
T Consensus        19 ~~~Alydy~-~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~g~~G~~Psnyv~~~   80 (96)
T 1wie_A           19 LCVARYSYN-PFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFV   80 (96)
T ss_dssp             EEEESSCCC-GGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEETTCCBCBCCTTSEECC
T ss_pred             EEEECCccC-CCcccCCCCCCeeeECCCCEEEEeEecCCCCEEEEEECCCCEEEEchHHEEEc
Confidence            567888996 555      789999999999877 6678999999986789999999999974

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=8.4e-12  Score=76.36  Aligned_cols=55  Identities=16%  Similarity=0.263  Sum_probs=47.6

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..+++.++|. +..+++|+|.+||+|.+....++|||.++..+ +.|+||++||+.+
T Consensus        18 ~~~~Alydy~-~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g-~~G~~P~~yv~~~   72 (88)
T 1x2q_A           18 RKVRALYDFE-AVEDNELTFKHGEIIIVLDDSDANWWKGENHR-GIGLFPSNFVTTN   72 (88)
T ss_dssp             EEEEESSCCC-CCSSSCCCCCSSCEEEEEECSCSSSEEEEETT-EEEEECGGGEESC
T ss_pred             eEEEEcccCC-CCCcCccCCCCCCEEEEEEeCCCCEEEEEECC-cEEEEehHHEEEc
Confidence            4578889996 78888999999999988877789999999875 8999999999863

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=1.9e-11  Score=73.69  Aligned_cols=56  Identities=9%  Similarity=0.110  Sum_probs=46.6

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeC-CEEEEEeC-CCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVD-GMVMIRNG-ENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~-g~~~~~~~-~~~~G~~P~~~v~~~  139 (139)
                      ....+.++|. +..+++|+|.+||+|.+.....+ |||.++.. +|+.|+||++||+..
T Consensus        18 ~~~~Alydy~-~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   75 (81)
T 1x6g_A           18 TQCITKCEHT-RPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRER   75 (81)
T ss_dssp             CEEEESSCBS-SCCTTCCCBCTTCEEEEEECCCSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CEEEECCCCC-cCCCCCCCCCCCCEEEEEeccCCCCeEEEEeCCCCCEEEEehHHEEEc
Confidence            3577889996 77888999999999977666555 99999864 789999999999863

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=99.25  E-value=6.6e-12  Score=73.94  Aligned_cols=56  Identities=13%  Similarity=0.102  Sum_probs=47.6

Q ss_pred             CccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeC--CCeE---EeeecCCEEeC
Q psy6450          82 ERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNG--ENRQ---GVCPLKYLQEV  139 (139)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~--~~~~---G~~P~~~v~~~  139 (139)
                      ....++.++|. +..+++|+|.+||+|.+ ....+|||.++..  +|+.   |+||++||+.+
T Consensus        10 ~~~~~alydy~-~~~~~eLs~~~Gd~i~v-~~~~~~Ww~g~~~~~~g~~~~~G~~P~~yv~~~   70 (72)
T 2kgt_A           10 GPKYVGLWDFK-SRTDEELSFRAGDVFHV-ARKEEQWWWATLLDEAGGAVAQGYVPHNYLAER   70 (72)
T ss_dssp             CCEEECCTTCB-CSSTTSCBCCTTCCEEE-EEECSSCEEEEEECTTSCEEEEEEECTTTSEEE
T ss_pred             CcEEEEcccCC-CCCcCCcCCCCCCEEEE-eeCCCCEEEEEEcCCCCCEeCCcEEcHhHEEEc
Confidence            34678889995 78888999999999988 7778999999985  5688   99999999863

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.25  E-value=7.5e-12  Score=73.19  Aligned_cols=54  Identities=9%  Similarity=0.097  Sum_probs=45.3

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. +..+++|+|.+||+|.+... ++|||.++. +++.|+||++||+.+
T Consensus         9 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~-~g~~G~~P~~yv~~~   62 (69)
T 1uhf_A            9 EEYIALYPYS-SVEPGDLTFTEGEEILVTQK-DGEWWTGSI-GDRSGIFPSNYVKPK   62 (69)
T ss_dssp             EEEECSSCBC-CSSSSBCCBCTTCEEEECEE-ETTEEEECS-TTCCEEECGGGCEEC
T ss_pred             CEEEEeeeEC-CCCcCccCCCCCCEEEEEEe-CCCEEEEEe-CCcEEEEchHHeEEC
Confidence            3567888996 77888999999999976665 799998874 569999999999874

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1

Probab=99.25  E-value=1.3e-11  Score=70.60  Aligned_cols=53  Identities=11%  Similarity=0.233  Sum_probs=46.0

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQE  138 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~  138 (139)
                      ..++.++|. ++.+++|+|.+||+|.+.....+|||.++..+ +.|+||++||+.
T Consensus         7 ~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g-~~G~~P~~yv~~   59 (62)
T 1uj0_A            7 RVRALYDFE-AVEDNELTFKHGELITVLDDSDANWWQGENHR-GTGLFPSNFVTT   59 (62)
T ss_dssp             EEEESSCBC-CCSTTBCCBCTTCEEEEEECCSSSEEEEEETT-EEEEEEGGGEES
T ss_pred             EEEECccCC-CCCcCCcCCCCCCEEEEEEeCCCCEEEEEECC-CEEEechhHEEE
Confidence            567888996 77788999999999988877789999999875 899999999985

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=7.6e-12  Score=73.29  Aligned_cols=55  Identities=25%  Similarity=0.355  Sum_probs=47.1

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..+++.++|. ++.+++|+|.+||+|.+.....+|||.++.. ++.|+||++||+.+
T Consensus         9 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-g~~G~~P~~yv~~~   63 (70)
T 2ega_A            9 EQYVVVSNYK-KQENSELSLQAGEVVDVIEKNESGWWFVSTS-EEQGWVPATYLEAQ   63 (70)
T ss_dssp             BCEECCSCCC-CCSSSSCCCCTTCBCEEEEECTTSEEEEECS-SCEEEEEGGGCEES
T ss_pred             cEEEECceEC-CCCCCcccCCCCCEEEEEEccCCCeEEEEEC-CCEEEEehHHcEEC
Confidence            3577889996 7788899999999997777777999999875 59999999999874

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=1e-11  Score=73.96  Aligned_cols=55  Identities=22%  Similarity=0.399  Sum_probs=45.2

Q ss_pred             ccceeccccccccC-------CCceeeecCcEEEEEccee-CCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADG-------ESGLSLLRDQIVIQIGDEV-DGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~-------~~~l~~~~g~~v~~~~~~~-~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..+++.++|. +..       +++|+|.+||+|.+....+ +|||.++. +++.|+||++||+.+
T Consensus         8 ~~~~Al~dy~-~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~-~g~~G~~P~~yv~~~   70 (76)
T 2csi_A            8 RRMVALYDYD-PRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGEL-NGQKGLVPSNFLEEV   70 (76)
T ss_dssp             EEEECSSCCC-TTTTSCSSSTTTSCCCCTTCEEEEESSCCSSSEEEEEE-TTEEEEEEGGGCCBC
T ss_pred             cEEEEcccCC-CCCcccCCCCCCcccCCCCCEEEEeEecCCCCeEEEEE-CCcEEEEehHHEEEC
Confidence            3567888886 555       7899999999998777655 58999887 679999999999864

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A

Probab=99.24  E-value=1.3e-11  Score=75.16  Aligned_cols=55  Identities=15%  Similarity=0.234  Sum_probs=46.6

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEe-CCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRN-GENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~-~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. +..+++|+|.+||+|.+.... +|||.++. .+|+.|+||++||+.+
T Consensus        26 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~~   81 (86)
T 2oi3_A           26 IIVVALYDYE-AIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARV   81 (86)
T ss_dssp             EEEEESSCCC-CSSSSCCCCCTTCEEEEEEES-SSEEEEEETTTCCEEEEEGGGEEEG
T ss_pred             cEEEECccCC-CCCCCcCcCCCCCEEEEEEcC-CCeEEEEECCCCCEEEEehHHcEEc
Confidence            3577889996 778889999999999766655 79999998 5779999999999864

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}

Probab=99.23  E-value=6.4e-12  Score=75.44  Aligned_cols=55  Identities=7%  Similarity=0.199  Sum_probs=47.2

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...+|.++|. ++.+++|+|.+||+|.+.....+|||.++. +|+.|+||++||+.+
T Consensus        19 ~~~~Alydy~-a~~~~eLsf~~Gd~I~Vl~~~~~gWw~g~~-~g~~G~fP~nyV~~~   73 (79)
T 1z9q_A           19 PRAEALFDFT-GNSKLELNFKAGDVIFLLSRINKDWLEGTV-RGATGIFPLSFVKIL   73 (79)
T ss_dssp             CCEEESSCCC-CSSTTBCCCCTTCCBCCCEESSSSEEEEEE-TTEEEEEEGGGEEES
T ss_pred             eEEEEcCccC-CCCCCcccccCCCEEEEeEecCCCEEEEEE-CCeEEEecHHHEEEC
Confidence            4578889996 788889999999999777767799999986 569999999999875

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.23  E-value=1.4e-11  Score=73.72  Aligned_cols=55  Identities=13%  Similarity=0.254  Sum_probs=47.0

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..+++.++|. +..+++|+|.+||+|.+.....+|||.++. +++.|+||++||+.+
T Consensus         8 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~~P~~yv~~~   62 (78)
T 2yuo_A            8 RRAKALLDFE-RHDDDELGFRKNDIITIISQKDEHCWVGEL-NGLRGWFPAKFVEVL   62 (78)
T ss_dssp             EEEEESSCBC-CSSTTBCCBCTTCEEEEEECCSSSEEEEEE-TTEEEEEEGGGEEEE
T ss_pred             eEEEECccCC-CCCCCCccCCCCCEEEEEEecCCCEEEEEE-CCCEEEEehHHEEEC
Confidence            3567889996 778889999999999888877899998875 569999999999864

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=1.6e-11  Score=73.63  Aligned_cols=55  Identities=16%  Similarity=0.070  Sum_probs=46.6

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeC-CCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNG-ENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~-~~~~G~~P~~~v~~~  139 (139)
                      ..+++.++|. ++.+++|+|.+||+|.+.. ..+|||.++.. +|+.|+||++||+.+
T Consensus        18 ~~~~Alydy~-a~~~~eLs~~~Gd~i~v~~-~~~~Ww~~~~~~~g~~G~~P~~yv~~~   73 (79)
T 2cud_A           18 DFLAVLSDYP-SPDISPPIFRRGEKLRVIS-DEGGWWKAISLSTGRESYIPGICVARV   73 (79)
T ss_dssp             CEEEESSCSS-CTTTSCCSSCTTCEEEEEE-EETTEEEEEETTTCCEEEEEGGGEEEE
T ss_pred             eEEEEccCCC-CCCCCcCCCCCCCEEEEEe-cCCCeEEEEECCCCCEEEeeHHHeEEc
Confidence            3577889996 7788899999999997666 57899999975 579999999999863

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=1.5e-11  Score=74.05  Aligned_cols=55  Identities=5%  Similarity=0.068  Sum_probs=47.2

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..+++.++|. +..+++|+|.+||+|.+.....+|||.++.. |+.|+||++||+.+
T Consensus        11 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-g~~G~~P~~yv~~~   65 (81)
T 2ysq_A           11 VSAEAVWDHV-TMANRELAFKAGDVIKVLDASNKDWWWGQID-DEEGWFPASFVRLW   65 (81)
T ss_dssp             EEEEESSCCC-CSSSSSCCCCTTCEEEEEECCSSSEEEEECS-SCEEEEEGGGEEES
T ss_pred             eEEEEeeeEC-CCCCCcCCCCCCCEEEEEEEcCcCEEEEEEC-CCEEEechHHEEEc
Confidence            3567889996 7788899999999998777777999999875 69999999999875

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}

Probab=99.22  E-value=6e-12  Score=77.71  Aligned_cols=55  Identities=20%  Similarity=0.338  Sum_probs=47.9

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..+++.++|. ++.+++|+|.+||+|.+.....+|||.++. +|+.|+||++||+.+
T Consensus        19 ~~~~Alydy~-a~~~~eLsf~~Gd~i~V~~~~~~gWw~g~~-~g~~G~fPsnyV~~~   73 (92)
T 2o2o_A           19 RRCQVAFSYL-PQNDDELELKVGDIIEVVGEVEEGWWEGVL-NGKTGMFPSNFIKEL   73 (92)
T ss_dssp             CEEEECSCBC-CCSSSCCCBCSSCEEECCCGGGSSCBCCEE-TTEECCBCSSSEECC
T ss_pred             eEEEEccccC-CCCCccccccCCCEEEEeEecCCCEEEEEE-CCeEEEeehHHEEEC
Confidence            3577889995 778889999999999888877899999887 669999999999864

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.21  E-value=1.6e-11  Score=72.76  Aligned_cols=54  Identities=13%  Similarity=0.199  Sum_probs=45.3

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. +..+++|+|.+||+|.+... .+|||.++. +++.|+||++||+.+
T Consensus        11 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~-~g~~G~~P~~yv~~~   64 (74)
T 1j3t_A           11 LKAQALCSWT-AKKDNHLNFSKHDIITVLEQ-QENWWFGEV-HGGRGWFPKSYVKII   64 (74)
T ss_dssp             CEEEESSCBC-CCSTTBCCBCTTCEEEEEEE-CSSEEEEES-TTCCCEEEGGGEEEC
T ss_pred             eEEEECCCCC-CCCCCccCCCCCCEEEEEec-CCCEEEEEE-CCcEEEEchHHeEEC
Confidence            3577889995 77888999999999976665 489999987 569999999999975

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=2.1e-11  Score=75.44  Aligned_cols=56  Identities=18%  Similarity=0.301  Sum_probs=47.4

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcce--e--CCEEEEEe-CCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDE--V--DGMVMIRN-GENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~--~--~g~~~~~~-~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. ++.+++|+|.+||+|.+....  .  +|||.+++ .+|+.|+||++||+.+
T Consensus        17 ~~~~Alydy~-~~~~~eLs~~~Gd~i~v~~~~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~   77 (94)
T 2e5k_A           17 ETLQVIYPYT-PQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKA   77 (94)
T ss_dssp             EEEEECSCBC-CSSSSBCCBCTTCEEEECGGGCCSTTTTEEEEEESSSCCEEEEEGGGEEEC
T ss_pred             eEEEECCcCC-CCCCCCcCCCCCCEEEEEECcCCCCCCCcEEEEECCCCCEEEechHHeEEc
Confidence            3577889996 788889999999999877663  4  89999996 6779999999999874

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.21  E-value=4.5e-11  Score=71.42  Aligned_cols=43  Identities=23%  Similarity=0.112  Sum_probs=37.2

Q ss_pred             CCceeeecCcEEEEEcce-eCCEEEEEe-CCCeEEeeecCCEEeC
Q psy6450          97 ESGLSLLRDQIVIQIGDE-VDGMVMIRN-GENRQGVCPLKYLQEV  139 (139)
Q Consensus        97 ~~~l~~~~g~~v~~~~~~-~~g~~~~~~-~~~~~G~~P~~~v~~~  139 (139)
                      .++|+|.+||+|.+.... .+|||.++. .+|+.|+||++||+.+
T Consensus        32 ~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~nyV~~~   76 (78)
T 1k1z_A           32 GGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   76 (78)
T ss_dssp             CCCCCBCTTCEEEEEECCSSCSCEEEEETTTTEEEEECSTTEEES
T ss_pred             CCccCCCCCCEEEEEEcCCCCCeEEEEECCCCCEEEEehHHeEEC
Confidence            478999999999777664 799999997 6789999999999864

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A

Probab=99.20  E-value=1.9e-11  Score=72.42  Aligned_cols=54  Identities=17%  Similarity=0.284  Sum_probs=45.6

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcce-eCCEEEEEeCCCeEEeeecCCEEe
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDE-VDGMVMIRNGENRQGVCPLKYLQE  138 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~-~~g~~~~~~~~~~~G~~P~~~v~~  138 (139)
                      ...++.++|. ++.+++|+|.+||+|.+.... ++|||.++. +|+.|+||++||+.
T Consensus        10 ~~~~alydy~-~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~-~g~~G~~P~~yv~~   64 (74)
T 1gbq_A           10 MEAIAKYDFK-ATADDELSFKRGDILKVLNEECDQNWYKAEL-NGKDGFIPKNYIEM   64 (74)
T ss_dssp             CEEEESSCBC-CSSTTBCCBCTTCEEECCBCSSCSSEEEEEE-TTEEEEEEGGGEEE
T ss_pred             eEEEECccCC-CCCCCeeeEcCCCEEEEeEecCCCCEEEEEE-CCCEEEEehHhEEE
Confidence            3577889996 778889999999999777665 568999886 66999999999986

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=1.9e-11  Score=76.09  Aligned_cols=54  Identities=22%  Similarity=0.328  Sum_probs=44.3

Q ss_pred             cceecccccccc--------CCCceeeecCcEEEEEcc-eeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIAD--------GESGLSLLRDQIVIQIGD-EVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~--------~~~~l~~~~g~~v~~~~~-~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      .+++.++|. +.        .+++|+|.+||+|.+... ..+|||.++. +|+.|+||++||+.+
T Consensus        19 ~~~Alydy~-~~~~~~~~~~~~~eLsf~~Gd~i~vl~~~~~~gWw~g~~-~g~~G~~P~~yv~~~   81 (97)
T 2csq_A           19 IFVALFDYD-PLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGET-CARLGLIPCNMVSEI   81 (97)
T ss_dssp             EEECSSCBC-TTTTSSCHHHHTTBCCBCTTCEEEEEEEECTTCEEEEEE-TTEEEEEETTTSEEC
T ss_pred             EEEEccccC-CCcccccCCCCCCccCCCCCCEEEEEEecCCCCeEEEEE-CCcEEEEehHHeEEC
Confidence            467888996 55        677999999999977643 4578999998 569999999999975

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=3.1e-11  Score=73.85  Aligned_cols=56  Identities=16%  Similarity=0.129  Sum_probs=45.9

Q ss_pred             ccceecccccc-ccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQI-ADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~-~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..+++.++|.. ++..++|+|.+||+|.+.....+|||.++. +|+.|+||++||+.+
T Consensus        17 ~~~~alydy~~~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~fP~~yv~~~   73 (88)
T 2dbk_A           17 VFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEV-NGRKGLFPFTHVKIF   73 (88)
T ss_dssp             EEEEECSCBCCCTTCSSBCCBCTTCEEEEEEECTTSCEEEEC-SSCEEEECTTTEEEC
T ss_pred             EEEEEcccccCCCCCCCcccCCCCCEEEEEEecCCCEEEEEe-CCCEEEEehHHeEEC
Confidence            35678888852 337888999999999877777899998865 569999999999975

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}

Probab=99.19  E-value=4.1e-11  Score=94.51  Aligned_cols=58  Identities=28%  Similarity=0.463  Sum_probs=53.2

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~   80 (139)
                      ...++|+|+|.++.++||+|++||+|.|++..+++||.|++  +|+.|+||++||+.+..
T Consensus       442 ~~~~~aly~y~a~~~dELs~~~GD~i~v~~~~~~gW~~G~~~~~g~~G~fPsnyV~~~~~  501 (526)
T 2de0_X          442 AHNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKIE  501 (526)
T ss_dssp             CCEEEECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEECCC
T ss_pred             ccceEEeecCCCCCCCcCCcCCCCEEEEccccCCCeeEEEeCCCCCEEEECchheeEccc
Confidence            35699999999999999999999999999988899999995  89999999999998654

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus}

Probab=99.19  E-value=2e-11  Score=75.41  Aligned_cols=57  Identities=12%  Similarity=0.191  Sum_probs=47.3

Q ss_pred             CccceeccccccccCCCceeeecCcEEEEEccee----CCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          82 ERPLQVTHNLQIADGESGLSLLRDQIVIQIGDEV----DGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~----~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...+++.++|. +..+++|+|.+||+|.+.....    +|||.++..+++.|+||++||+.+
T Consensus        17 ~~~~~alydy~-a~~~~eLsf~~Gd~i~v~~~~~~~~~~gWw~g~~~~~~~G~~P~~yv~~~   77 (93)
T 1wxu_A           17 HVVARAEYDFV-AVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKIL   77 (93)
T ss_dssp             BBCEEESSCBC-CSSSSBCCBCSSCBCEECCTTTSCSCSSCEEEESSSSSCEEECSTTEEEC
T ss_pred             CEEEEECccCC-CCCCCccCcCCCCEEEEEECCCCCCCCCcEEEEeCCcCEEEEehHHEEEc
Confidence            34678899996 7888899999999997776655    699999876655999999999975

>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}

Probab=99.18  E-value=3.8e-11  Score=70.93  Aligned_cols=55  Identities=20%  Similarity=0.196  Sum_probs=46.0

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeC--CCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNG--ENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~--~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. ++.+++|+|.+||+|.+.... +|||.++..  +|+.|+||++||+.+
T Consensus        12 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~-~~W~~g~~~~~~g~~G~~P~~yv~~~   68 (74)
T 2m0y_A           12 KYGVAFYNYD-ARGADELSLQIGDTVHILETY-EGWYRGYTLRKKSKKGIFPASYIHLK   68 (74)
T ss_dssp             SCEEECSEEC-CCSSSBCCEETTEEEEEEEBS-SSCEEEEESSCSSCCEEECGGGEEEC
T ss_pred             eEEEEceeeC-CCCcCcccCCCCCEEEEEEcC-CCeEEEEECCCCCCEEEEehHHEEEe
Confidence            4577889995 788889999999999766654 899999875  579999999999863

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A

Probab=99.18  E-value=1.7e-12  Score=77.57  Aligned_cols=55  Identities=16%  Similarity=0.194  Sum_probs=47.9

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQE  138 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~  138 (139)
                      ..+++.++|. +...++|+|.+||+|.+.....+|||.++..+|+.|+||++||+.
T Consensus        21 ~~~~alydy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~   75 (77)
T 1awj_A           21 TLVIALYDYQ-TNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVE   75 (77)
T ss_dssp             SCCCCCCCBC-CCCTTSCCBCSSSCCSCCCTTSSSBCCCCCSSSCCCCCBSTTCCC
T ss_pred             eEEEECccCC-CCCcCCcCCCCCCEEEEEEecCCCCEEEEECCCCEEEEehHHEEE
Confidence            4578889996 778889999999999777777789999998788999999999975

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.18  E-value=3.7e-11  Score=92.86  Aligned_cols=57  Identities=33%  Similarity=0.813  Sum_probs=51.4

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~   80 (139)
                      ...++|+|+|.++.++||+|++||++.|++.. ++||.+++  +|+.|+||++||..+..
T Consensus         8 ~~~~~al~~~~~~~~~el~~~~gd~~~v~~~~-~~W~~~~~~~~g~~G~~P~~yv~~~~~   66 (454)
T 1qcf_A            8 RIIVVALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVDS   66 (454)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEECC-TTEEEEEETTTCCEEEEEGGGEEETTC
T ss_pred             CeEEEECcccCCcCCCcCcccCCCEEEEEecC-CCCeEEEECCCCceEEecchhcccccc
Confidence            34699999999999999999999999999984 78999995  88999999999997653

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A

Probab=99.17  E-value=5.7e-11  Score=69.48  Aligned_cols=46  Identities=17%  Similarity=0.018  Sum_probs=37.8

Q ss_pred             ccCCCceeeecCcEEEEEcc-eeCCEEEEE-eCCCeEEeeecCCEEeC
Q psy6450          94 ADGESGLSLLRDQIVIQIGD-EVDGMVMIR-NGENRQGVCPLKYLQEV  139 (139)
Q Consensus        94 ~~~~~~l~~~~g~~v~~~~~-~~~g~~~~~-~~~~~~G~~P~~~v~~~  139 (139)
                      ++..++|+|.+||+|.+... ..+|||.++ ..+|+.|+||++||+.+
T Consensus        21 ~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~   68 (70)
T 1gcq_C           21 GAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   68 (70)
T ss_dssp             GGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             CCCCCcCCcCCCCEEEEEeCCCCCCCeEEEeCCCCCEeEeehHHeEEC
Confidence            33455899999999977666 578999997 56789999999999864

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A

Probab=99.17  E-value=2.1e-11  Score=77.34  Aligned_cols=55  Identities=18%  Similarity=0.105  Sum_probs=44.9

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcc-eeCC--EEEEEeCC-------CeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGD-EVDG--MVMIRNGE-------NRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~-~~~g--~~~~~~~~-------~~~G~~P~~~v~~~  139 (139)
                      .++|.++|. ++..++|+|.+||+|.+... ..+|  ||.++..+       |+.|+||+|||+.+
T Consensus        24 ~~~Alydy~-a~~~~ELsf~~GDiI~Vl~k~~~~g~dWW~G~~~~~~~~~~~g~~G~fPsnYV~~~   88 (108)
T 1i1j_A           24 MAVALQDYM-APDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVRED   88 (108)
T ss_dssp             EEEESSCBC-CSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEE
T ss_pred             EEEECCccC-CCCCCccccCCCCEEEEEEecCCCCCCEEEEEECCccccCCCCCEEEEchhHEEEc
Confidence            577889996 78888999999999976655 2355  99998663       79999999999863

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A

Probab=99.17  E-value=3.1e-11  Score=74.16  Aligned_cols=56  Identities=14%  Similarity=0.179  Sum_probs=45.3

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEc-------------ceeC--CEEEEEeC-CCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIG-------------DEVD--GMVMIRNG-ENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~-------------~~~~--g~~~~~~~-~~~~G~~P~~~v~~~  139 (139)
                      ..+++.++|. ++.+++|+|.+||+|.+..             ...+  |||.++.. +|++|+||++||+.+
T Consensus        12 ~~~~Alydy~-a~~~~ELsf~~GD~I~V~~~~~~~l~~~~~~~~~~~~~gW~~G~~~~~g~~G~fP~nyVe~i   83 (90)
T 3o5z_A           12 FQYRALYPFR-RERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDFPGTYVEFL   83 (90)
T ss_dssp             EEEEECSCBC-CCSTTBCCBCTTCEEEEEHHHHHHTTCCTTGGGCHHHHCEEEEEETTTCCEEEEEGGGEEEE
T ss_pred             cEEEEeeeEC-CCCCCccCCcCCCEEEEEeccccccccccccccCCCCCCceEEEeCCCCCEEEeehHHEEEe
Confidence            3578899996 7888899999999997763             2223  99998874 479999999999864

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A

Probab=99.16  E-value=9.9e-11  Score=66.90  Aligned_cols=58  Identities=16%  Similarity=0.313  Sum_probs=48.2

Q ss_pred             CeEEEEcCCcEEecCCCC--ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEe
Q psy6450          65 GRVGYFPSNYVIKVQPGE--RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRN  123 (139)
Q Consensus        65 g~~G~~P~~~v~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~  123 (139)
                      |+.||||.+|++.+....  ...++.++|. ++.+++|+|.+||+|.+....++|||.++.
T Consensus         2 g~~G~~P~~yv~~~~~~~~~~~~~alydy~-a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~   61 (62)
T 1g2b_A            2 DRQGFVPAAYVKKLDSGTGKELVLALYDYQ-EKSPREVTMKKGDILTLLNSTNKDWWKVEV   61 (62)
T ss_dssp             CEEEEEEGGGEEECCCCSSSCEEEECSCBC-CSSTTBCCBCTTCEEEEEECCSSSEEEEEE
T ss_pred             CCccccccceEeecCCCCCceEEEEeeeEC-CCCCCccCCCCCCEEEEEEecCCCEEEEEe
Confidence            688999999999865433  3578889996 788889999999999888877899998764

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}

Probab=99.16  E-value=2.8e-11  Score=78.21  Aligned_cols=55  Identities=9%  Similarity=0.119  Sum_probs=47.3

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEe--CCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRN--GENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~--~~~~~G~~P~~~v~~~  139 (139)
                      ..++.++|. ++.+++|+|.+||+|.+.....+|||.++.  ..|+.|+||++||+.+
T Consensus         5 ~~~Alydy~-a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~~~~g~~G~~P~nyv~~~   61 (120)
T 2kym_A            5 FAVTLYEFK-AERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRII   61 (120)
T ss_dssp             EEEECSCBC-CCSTTCCCBCTTCEEEEEEEETTTEEEEEESSSCSCCCCEEGGGEEEE
T ss_pred             EEEEcccCC-CCCCCccCCCCCCEEEEEEecCCCEEEEEECCCCCCEEEEchHHEEEc
Confidence            357888996 788889999999999888778899999986  5678999999999863

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A

Probab=99.15  E-value=3.1e-11  Score=72.97  Aligned_cols=55  Identities=16%  Similarity=0.189  Sum_probs=45.0

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcc---------------eeCCEEEEEeCC-CeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGD---------------EVDGMVMIRNGE-NRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~---------------~~~g~~~~~~~~-~~~G~~P~~~v~~~  139 (139)
                      ..++.++|. ++..++|+|.+||+|.+...               ...|||.+++.. |+.|+||.+||+.+
T Consensus         7 ~~~Alydy~-~~~~~eLs~~~Gd~I~V~~~~~~~~~~~~~~e~~~~~~gW~~g~~~~~g~~G~fP~~yV~~~   77 (83)
T 3i5r_A            7 QYRALYDYK-KEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYI   77 (83)
T ss_dssp             EEEECSCBC-CCSTTBCCBCTTCEEEEEHHHHHHHTCTTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEE
T ss_pred             EEEEccccC-CCCCCccccCCCCEEEEeeccccccccccccccCCCCCccEEEEeCCCCCEEEEehHHEEEC
Confidence            567889995 77888999999999977643               234999998664 89999999999864

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}

Probab=99.15  E-value=5.8e-11  Score=72.83  Aligned_cols=54  Identities=13%  Similarity=0.217  Sum_probs=45.3

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEe-CCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRN-GENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~-~~~~~G~~P~~~v~~~  139 (139)
                      .+++.++|. +..+++|+|.+||+|.+... .+|||.++. .+|+.|+||++||+.+
T Consensus         5 ~~~Alydy~-~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~~g~~G~~P~~yv~~~   59 (90)
T 3reb_B            5 IVVALYDYV-SWSPDDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARV   59 (90)
T ss_dssp             EEEESSCBC-CSSTTBCCBCTTCEEEEEEC-SSSEEEEEETTTCCEEEEEGGGEEEE
T ss_pred             EEEECCccC-cCCcCcCCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEehhheEEC
Confidence            467888995 77888999999999976665 489999998 5679999999999863

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=99.15  E-value=3.7e-12  Score=94.47  Aligned_cols=57  Identities=19%  Similarity=0.280  Sum_probs=0.0

Q ss_pred             cEEEEEeeecC--CCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCC
Q psy6450          24 NLFVVLYNFKS--RHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        24 ~~~~al~~~~~--~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   80 (139)
                      ..++|+|+|.+  ..++||+|++||+|.|+++..++||.|+.+|+.|+||.+||+.+..
T Consensus       248 ~~a~alyd~~~~~~~~~ELs~~~Gd~i~v~~~~~~~ww~g~~~g~~G~fP~~yv~~~~~  306 (308)
T 3qwy_A          248 AKAKVTFDRVPNAYDPTQLRVKKGQTVLVTQKMSNGMYKAELDGQIGSVPHTYLRFTAV  306 (308)
T ss_dssp             -----------------------------------------------------------
T ss_pred             cccccccccccccCCcccceeCCCCEEEEEEEcCCCcEEEEECCeeEEechHHeEEecC
Confidence            35899999954  5569999999999999999888999999999999999999988754

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=98.74  E-value=4.8e-12  Score=93.68  Aligned_cols=57  Identities=25%  Similarity=0.321  Sum_probs=51.3

Q ss_pred             cEEEEEeeecCCC--CCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCC
Q psy6450          24 NLFVVLYNFKSRH--ADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        24 ~~~~al~~~~~~~--~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   80 (139)
                      .+++|+|+|.++.  ++||+|++||+|.|+++.+++||.|+.+|+.||||++||+.+..
T Consensus       238 ~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~  296 (303)
T 2lqn_A          238 VFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDP  296 (303)
Confidence            3599999998554  77999999999999999889999999999999999999998764

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}

Probab=99.12  E-value=1.6e-10  Score=76.75  Aligned_cols=54  Identities=22%  Similarity=0.219  Sum_probs=46.2

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcc-eeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGD-EVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~-~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      .+++.++|. ++.+++|+|.+||+|.+... ..+|||.++. +|+.|+||++||+.+
T Consensus         7 ~~~Alydy~-a~~~~ELsf~~Gd~i~Vl~~~~~~gWw~g~~-~g~~G~fP~~yv~~~   61 (142)
T 2kbt_A            7 TAKARYDFC-ARDRSELSLKEGDIIKILNKKGQQGWWRGEI-YGRIGWFPSNYVEED   61 (142)
T ss_dssp             EEEESSCCC-CSSSSBCCCCTTCEEEEEECCCSSSEEEEEE-TTEEEEEETTSEEES
T ss_pred             EEEECCccC-CCCCCcCCCCCCCEEEEEEecCCCCeEEEEE-CCeeEEechHHEEEc
Confidence            567889996 77888999999999977666 4789999997 569999999999864

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B

Probab=99.11  E-value=3e-11  Score=77.46  Aligned_cols=55  Identities=25%  Similarity=0.415  Sum_probs=47.0

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEc-----ceeCCEEEEEeC---------CCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIG-----DEVDGMVMIRNG---------ENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~-----~~~~g~~~~~~~---------~~~~G~~P~~~v~~~  139 (139)
                      .+++.++|. ++.+++|+|.+||+|.+..     ...+|||.++..         +|+.|+||++||+.|
T Consensus        46 ~~~Alydy~-a~~~dELsf~~GDiI~Vl~~~~~~~~~~gWw~G~~~~t~~~~~~~~g~~G~fPsnyV~~l  114 (115)
T 1bb9_A           46 KVQAQHDYT-ATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV  114 (115)
T ss_dssp             EEEESSCBC-CSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEE
T ss_pred             EEEECCccC-CCCCCccCcCCCCEEEEeeccCCcccCCCeEEEEeCCCcccccccCCCEEEechHHEEEC
Confidence            577889996 7888899999999998777     778999999754         368999999999975

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.11  E-value=4.7e-11  Score=84.06  Aligned_cols=55  Identities=25%  Similarity=0.415  Sum_probs=47.4

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEc-----ceeCCEEEEEeC---------CCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIG-----DEVDGMVMIRNG---------ENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~-----~~~~g~~~~~~~---------~~~~G~~P~~~v~~~  139 (139)
                      .+++.++|. +...++|+|.+||+|.+..     ...+|||+++..         +|+.|+||.+||+.|
T Consensus       144 ~~rALYdY~-a~~~dELSf~~GDiI~Vl~~~~~~~~ddgWw~G~~~~t~~~~~d~~G~~G~FPsnYVe~l  212 (213)
T 1mv3_A          144 KVQAQHDYT-ATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPENFTERV  212 (213)
T ss_dssp             EEEESSCBC-CCSTTCCCBCSSCEEEECCCSCGGGSCTTEEEEEEHHHHHTGGGGGGTCEEEESTTEEEE
T ss_pred             EEEECCCcC-CCCCCcCCcCCCCEEEEeecCCCCccCCCeeEEEeCCcccccccCCCCEEEecHHHeEEC
Confidence            467889996 8888899999999998777     678999999964         578999999999974

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A

Probab=99.10  E-value=2.1e-10  Score=65.49  Aligned_cols=41  Identities=24%  Similarity=0.750  Sum_probs=38.1

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC   63 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~   63 (139)
                      ...++|+|+|.++.++||+|++||+|.|+++.+++||.+++
T Consensus        21 ~~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~   61 (62)
T 1g2b_A           21 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV   61 (62)
T ss_dssp             SCEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEE
T ss_pred             ceEEEEeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEEe
Confidence            35699999999999999999999999999998899999975

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A

Probab=99.09  E-value=1.4e-11  Score=72.31  Aligned_cols=55  Identities=16%  Similarity=0.334  Sum_probs=46.1

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEE-eeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQG-VCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G-~~P~~~v~~~  139 (139)
                      ...++.++|. ++.+++|+|.+||+|.+.....+|||.++..+ +.| +||++||+.+
T Consensus         7 ~~~~al~dy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g-~~gG~~P~~yv~~~   62 (71)
T 1hsq_A            7 CAVKALFDYK-AQREDELTFIKSAIIQNVEKQEGGWWRGDYGG-KKQLWFPSNYVEEM   62 (71)
T ss_dssp             SCCCCSSCCC-CSSSSSCCCCTTCCCBSCCCBTTTEECCBCSS-SCSCCEETTTCCSC
T ss_pred             eEEEECCCCC-cCCCCccCCCCCCEEEEEEecCCCEEEEEECC-eEEeEEChHHcEEC
Confidence            4577889996 77888999999999987777789999988754 665 9999999864

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}

Probab=99.09  E-value=1.2e-10  Score=75.04  Aligned_cols=55  Identities=20%  Similarity=0.096  Sum_probs=45.7

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeC--CCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNG--ENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~--~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. ++.+++|+|.+||+|.+.... +|||.++..  +|+.|+||++||+.+
T Consensus        60 ~~~~Alydy~-a~~~~eLsf~~Gd~i~vl~~~-~gWw~g~~~~~~g~~G~fP~nyV~~~  116 (119)
T 2rqr_A           60 RHGVAIYNFQ-GSGAPQLSLQIGDVVRIQETC-GDWYRGYLIKHKMLQGIFPKSFIHIK  116 (119)
T ss_dssp             EEEEBCSCBC-CCSTTBCCBCTTCEEEEEEEE-TTEEEEEESSCTTCEEEEEGGGBCCC
T ss_pred             eEEEEccccC-CCCCCcccCcCCCEEEEEEcC-CCEEEEEECCCCCCEEEeChhHEEEe
Confidence            3567889996 788889999999999766654 799999874  569999999999853

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}

Probab=99.08  E-value=1.6e-10  Score=78.96  Aligned_cols=54  Identities=17%  Similarity=0.231  Sum_probs=47.8

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQE  138 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~  138 (139)
                      .+++.++|. +..+++|+|.+||+|.+....++|||.++..+|+.|+||++||+.
T Consensus       120 ~~~alydy~-~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~nyv~~  173 (174)
T 3qwx_X          120 VVVGTFKFT-GERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQI  173 (174)
T ss_dssp             EEEESSCBC-CSSTTBCCBCTTCEEEEEECCSSSEEEEECTTCCEEEEEGGGEEE
T ss_pred             EEEEecCcc-cCCCCccccccCCEEEEEEccCCCeEEEEECCCCEEEEChHHEEe
Confidence            467888995 778889999999999888877899999998788999999999985

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1

Probab=99.08  E-value=1.6e-10  Score=66.30  Aligned_cols=42  Identities=14%  Similarity=0.353  Sum_probs=36.4

Q ss_pred             CCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          97 ESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        97 ~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      +++|+|.+||+|.+.....+|||.++ .+|+.|+||++||+.+
T Consensus         3 ~~eLs~~~Gd~i~v~~~~~~~Ww~g~-~~g~~G~~P~~yv~~~   44 (63)
T 1tuc_A            3 PREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKKL   44 (63)
T ss_dssp             CCCCCBCTTCEEEEEECCSSSEEEEE-ETTEEEEEEGGGEEEC
T ss_pred             ccccCCCCCCEEEEEEecCCCEEEEE-ECCcEEEEeHHHEEEc
Confidence            56899999999988877789999997 4669999999999864

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A

Probab=99.08  E-value=6.7e-11  Score=74.99  Aligned_cols=55  Identities=9%  Similarity=0.123  Sum_probs=45.3

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCC--CeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGE--NRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~--~~~G~~P~~~v~~~  139 (139)
                      ..++.++|. ++.+++|+|.+||+|.+....++|||.++..+  |+.|+||++||+.+
T Consensus         7 ~~~Alydy~-a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~g~~g~~G~fPsnYV~~~   63 (108)
T 2rqv_A            7 YAIVLYDFK-AEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSII   63 (108)
T ss_dssp             CEEESSCCC-CCSSSBCCCCSSEEECCCCEETTTEEEECCSSSSCCCEEEESTTCBCC
T ss_pred             EEEECCCcC-CCCCCcCCcCCCCEEEEeEecCCCEEEEEECCccCCeeEeecceEEEe
Confidence            467889996 88888999999999987777789999888643  33499999999853

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}

Probab=99.02  E-value=9.8e-11  Score=69.83  Aligned_cols=45  Identities=18%  Similarity=0.382  Sum_probs=38.9

Q ss_pred             ccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          94 ADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        94 ~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ++..++|+|.+||+|.+.....+|||.++. +|+.|+||++||+.+
T Consensus         2 a~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~~P~~yv~~~   46 (77)
T 2jmc_A            2 AMGPREVTMKKGDILTLLNSTNKDWWKVEV-NDRQGFVPAAYVKKL   46 (77)
T ss_dssp             CSSSCCCCCCTTCEEECCCCCCSSCCCEEE-TTEEECCCGGGEEEC
T ss_pred             CcCCCccCCCCCCEEEEEEecCCCEEEEEE-CCcEEEEEeeEEEEc
Confidence            456778999999999888887899999974 569999999999874

>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.02  E-value=1.1e-10  Score=72.21  Aligned_cols=57  Identities=25%  Similarity=0.330  Sum_probs=49.0

Q ss_pred             ccEEEEEeee--cCCCCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEecC
Q psy6450          23 TNLFVVLYNF--KSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIKVQ   79 (139)
Q Consensus        23 ~~~~~al~~~--~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~   79 (139)
                      ...++|+++|  ...+..+|+|++|+.+.|++..+.+||.|++ .|+.|+||.+|+..+.
T Consensus        39 l~~~~a~~~f~~~k~g~~DLpfkkGE~LeVI~~~e~~wwLcRNs~GkyGyVP~~yl~~~d   98 (102)
T 1ri9_A           39 LYSTKVTTSITSKKWGTRDLQVKPGESLEVIQTTDDTKVLCRNEEGKYGYVLRSYLADND   98 (102)
T ss_dssp             SSCCBCCTTSCSSCCCTTBCCCCTTCBCEEEEESSSSEEEEEETTTEEEEEEGGGSCC--
T ss_pred             EEEEEEeeccccccCCcccCCcCCCCEEEEEEeCCCCEEEEECCCCCCCceeHHHhcccc
Confidence            3447778888  6677899999999999999998889999999 8999999999998654

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A

Probab=98.99  E-value=1.3e-10  Score=82.88  Aligned_cols=55  Identities=13%  Similarity=0.301  Sum_probs=48.4

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      .+++.++|. +..+++|+|.+||+|.+..+.++|||.+++.+|+.|+||++||+.+
T Consensus       138 ~~~al~dy~-~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~  192 (230)
T 2dvj_A          138 YVRALFDFN-GNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY  192 (230)
T ss_dssp             CCBCCSCCC-CSSSSSCCCCSSCBCCCCBCSCSSEEEEECTTSCEEEEEGGGSCCC
T ss_pred             eEEEeeeec-CCCCCCccCcCCCEEEEEEccCCCcEEEEeCCCCEEEEehHHeEEc
Confidence            467888996 7788899999999998887778999999978889999999999864

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=98.97  E-value=5.4e-11  Score=93.17  Aligned_cols=55  Identities=35%  Similarity=0.732  Sum_probs=0.0

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECC-CCCeeEEEEC-CeEEEEcCCcEEec
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTS-DQNWWKGKCM-GRVGYFPSNYVIKV   78 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~-~~~w~~~~~~-g~~G~~P~~~v~~~   78 (139)
                      ..++|+|+|.++.+++|+|++||+|.|+... +++||.|+.. |+.|+||.+||+.+
T Consensus       429 ~~~~alydy~~~~~~eLsf~~Gd~i~vl~~~~~~~Ww~g~~~~g~~G~~P~nyv~~i  485 (486)
T 3haj_A          429 VRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVEAI  485 (486)
T ss_dssp             ---------------------------------------------------------
T ss_pred             eEEEEccccCCCCCCcCccCCCCEEEEEEecCCCCeeEEEeCCCCEEEEeHHHceeC
Confidence            3589999999999999999999999999876 4599999996 99999999999865

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=98.95  E-value=1.5e-10  Score=85.35  Aligned_cols=53  Identities=23%  Similarity=0.639  Sum_probs=47.5

Q ss_pred             EEEEEeeecCCCCC-----CcccCCCCEEEEEECCCCCeeEEEEC------CeEEEEcCCcEEe
Q psy6450          25 LFVVLYNFKSRHAD-----ELDLKPGYKVTVIDTSDQNWWKGKCM------GRVGYFPSNYVIK   77 (139)
Q Consensus        25 ~~~al~~~~~~~~~-----eLs~~~gd~i~v~~~~~~~w~~~~~~------g~~G~~P~~~v~~   77 (139)
                      +++|+|||.++.++     +|+|++||++.|++..+++||.++..      |+.|+||++|+.+
T Consensus         3 ~vrAlydy~~~~~~~~p~~eLsf~~GDil~V~~~~d~~WW~a~~~~~~~~~~~~G~iPsny~~e   66 (295)
T 1kjw_A            3 YIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVE   66 (295)
T ss_dssp             EEEESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHH
T ss_pred             EEEEeeccCCCCCCCCCCcCCcCCCCCEEEEEEeCCCCeEEEEECCCCCccCceeEeecHHHHH
Confidence            48999999998877     99999999999999988999999983      2789999999864

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}

Probab=98.93  E-value=1e-09  Score=65.63  Aligned_cols=52  Identities=23%  Similarity=0.291  Sum_probs=42.7

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcce--eCCEEEEEe---CCCeEEeeecCCE
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDE--VDGMVMIRN---GENRQGVCPLKYL  136 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~--~~g~~~~~~---~~~~~G~~P~~~v  136 (139)
                      ...+.++|. ++...||+|.+||++.+.+..  +.+||+++.   ..++.|+||+|||
T Consensus        19 ~~valydF~-Ar~~~ELS~~kGd~vevle~~~~~peW~lvr~~~~~~~qeGlVPsnyl   75 (82)
T 1u3o_A           19 LTVVLQDFS-AAHSSELSIQVGQTVELLERPSERPGWCLVRTTERSPPQEGLVPSSTL   75 (82)
T ss_dssp             EEECSSCBC-CCSTTCCCBCTTCEEEESSCTTSSTTEEEEEESSSSSCEEEEEEGGGS
T ss_pred             EEEEEeeec-CCCCCeeeEcCCCEEEEEecCCCCCCEEEEEECCCCCCcEeeccccEE
Confidence            467888996 889999999999999666554  479999996   4447899999997

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*

Probab=98.86  E-value=4.1e-09  Score=71.98  Aligned_cols=54  Identities=7%  Similarity=0.222  Sum_probs=46.0

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEe-CCCeEEeeecCCEEe
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRN-GENRQGVCPLKYLQE  138 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~-~~~~~G~~P~~~v~~  138 (139)
                      ..++|.++|. +..+++|++.+||++.+... +++||.++. .+|+.|+||++||+.
T Consensus        13 ~~~~alydy~-~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~~g~~G~vP~~yv~~   67 (175)
T 4d8k_A           13 NLVIALHSYE-PSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNFVAK   67 (175)
T ss_dssp             CEEEESSCBC-CCSSSBCCBCTTCEEEEEEC-CSSEEEEEETTTCCEEEEEGGGEEE
T ss_pred             cEEEEccCcC-CcCCcccccccCCEEEEEcc-CCCEEEEEECCCCceeeeccccccc
Confidence            3577889995 78888999999999966666 589999998 467999999999985

>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.86  E-value=1.5e-09  Score=67.12  Aligned_cols=45  Identities=24%  Similarity=0.274  Sum_probs=38.3

Q ss_pred             ccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450          94 ADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQE  138 (139)
Q Consensus        94 ~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~  138 (139)
                      .....+|.|.+||++-+.....++||+||+++|+.|+||.+||+.
T Consensus        52 k~g~~DLpfkkGE~LeVI~~~e~~wwLcRNs~GkyGyVP~~yl~~   96 (102)
T 1ri9_A           52 KWGTRDLQVKPGESLEVIQTTDDTKVLCRNEEGKYGYVLRSYLAD   96 (102)
T ss_dssp             CCCTTBCCCCTTCBCEEEEESSSSEEEEEETTTEEEEEEGGGSCC
T ss_pred             cCCcccCCcCCCCEEEEEEeCCCCEEEEECCCCCCCceeHHHhcc
Confidence            345667999999998666665689999999999999999999975

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}

Probab=98.85  E-value=2e-09  Score=87.01  Aligned_cols=60  Identities=17%  Similarity=0.244  Sum_probs=50.2

Q ss_pred             cEEEEEeeec---CCCCCCcccCCCCEEEEEEC-----CCCCeeEEEE--CCeEEEEcCCcEEecCCCCc
Q psy6450          24 NLFVVLYNFK---SRHADELDLKPGYKVTVIDT-----SDQNWWKGKC--MGRVGYFPSNYVIKVQPGER   83 (139)
Q Consensus        24 ~~~~al~~~~---~~~~~eLs~~~gd~i~v~~~-----~~~~w~~~~~--~g~~G~~P~~~v~~~~~~~~   83 (139)
                      .+++|++||.   ++.+..|+|++||+|.+...     .+++||.|++  +|+.|+||++||..+.+...
T Consensus       574 ~~~~Al~d~~~~~~~~~~~L~f~kGDlI~l~~~~~~~~~~~~W~~G~~~~~g~~G~fP~~~V~~lptl~~  643 (655)
T 3pvl_A          574 KYVVALQDNPNPAGEESGFLSFAKGDLIILDHDTGEQVMNSGWANGINERTKQRGDFPTDCVYVMPTVTL  643 (655)
T ss_dssp             CEEEESSCCCC-----CCBCCCCTTCEEEESSCCHHHHHHSSEEEEEETTTCCEEEEEGGGEEECCCSSC
T ss_pred             hhhhHHhhcccCCCCCCCcccccCCCEEEEccccCcccCCCCeEEEEeCCCCceEEeEhhhEEECCCCCC
Confidence            4699999999   67889999999999998887     3579999996  79999999999999876543

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A

Probab=98.82  E-value=4.6e-09  Score=76.45  Aligned_cols=54  Identities=15%  Similarity=0.190  Sum_probs=46.5

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      .+.|.++|. +..+++|++.+||+|.+....++|||.++. +|+.|+||++||+.+
T Consensus         4 ~~~a~~~~~-~~~~~el~~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~   57 (283)
T 3jv3_A            4 QVIGMYDYT-AQNDDELAFSKGQIINVLNKEDPDWWKGEV-SGQVGLFPSNYVKLT   57 (283)
T ss_dssp             EEEESSCBC-CSSTTBCCBCTTCEEEEEECCSTTEEEEEE-TTEEEEEEGGGEEEG
T ss_pred             EEEEccccC-CCCCCcCCCCCCCEEEEEecCCCCEEEEEE-CCCCCcCCCcccccc
Confidence            467888995 888889999999999888877899998875 569999999999863

>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo sapiens} PDB: 2gto_A

Probab=98.81  E-value=3.6e-09  Score=64.81  Aligned_cols=54  Identities=24%  Similarity=0.426  Sum_probs=47.7

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCC--CCeeEEEE-CCeEEEEcCCcEEe
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSD--QNWWKGKC-MGRVGYFPSNYVIK   77 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~--~~w~~~~~-~g~~G~~P~~~v~~   77 (139)
                      ...++|+++ ...+..+|+|++|+++.|+...+  .+||.|++ .|..|+||.+|++.
T Consensus        28 l~~a~a~~~-~k~g~~dLp~~~GE~LeII~~~e~p~g~Wl~RN~~G~~GyVp~~~v~v   84 (96)
T 2gtj_A           28 IHLAKACCD-VKGGKNELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKTTAVEI   84 (96)
T ss_dssp             CEEEEESSC-EECTTSCCEECTTCCEEEEECTTCSSSCCEEECTTCCBCCCCGGGEEE
T ss_pred             EEEEEEeec-CCCCcccCCcCCCCEEEEEEccCCCCCeEEEECCCCCCCccchhhEEE
Confidence            456899998 56689999999999999999875  57999999 89999999999975

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=98.81  E-value=4.4e-09  Score=78.93  Aligned_cols=54  Identities=7%  Similarity=0.209  Sum_probs=46.7

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      .+++.++|. +..+++|+|.+||+|.+....++|||.++. +|+.|+||++||+.+
T Consensus       176 ~~~alydy~-~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~~P~~yv~~~  229 (341)
T 2dyb_A          176 RAEALFDFT-GNSKLELNFKAGDVIFLLSRINKDWLEGTV-RGATGIFPLSFVKIL  229 (341)
T ss_dssp             EEEESSCBC-CSSSSBCCBCTTCEEEEEEECSSSEEEEEE-TTEEEEEEGGGEEEE
T ss_pred             EEEEEEeeC-CCCCCcCCccCCCEEEEEEecCCCEEEEEE-CCcEEEechHHeEEc
Confidence            577889996 788889999999999877777799999985 669999999999863

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}

Probab=98.79  E-value=7.1e-09  Score=81.81  Aligned_cols=55  Identities=18%  Similarity=0.146  Sum_probs=48.1

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEe-CCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRN-GENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~-~~~~~G~~P~~~v~~~  139 (139)
                      ..++.++|. ++.++||+|.+||+|.+....++|||.++. .+|+.|+||+|||+.+
T Consensus       444 ~~~aly~y~-a~~~dELs~~~GD~i~v~~~~~~gW~~G~~~~~g~~G~fPsnyV~~~  499 (526)
T 2de0_X          444 NQIAIYAHQ-PRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREK  499 (526)
T ss_dssp             EEEECSCBC-CSSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             ceEEeecCC-CCCCCcCCcCCCCEEEEccccCCCeeEEEeCCCCCEEEECchheeEc
Confidence            567889995 888999999999999888888899999885 5779999999999864

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.75  E-value=3.7e-08  Score=59.57  Aligned_cols=60  Identities=27%  Similarity=0.351  Sum_probs=48.4

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCC----CCeeEEEECCeEEEEcCCcEEecCCCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSD----QNWWKGKCMGRVGYFPSNYVIKVQPGE   82 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~----~~w~~~~~~g~~G~~P~~~v~~~~~~~   82 (139)
                      ...+.+..++.+...-||++++||++.|+++.+    ..||.+..+|..||||++|++.+....
T Consensus        17 ~~LY~~t~~~~~tq~~dl~l~~GdlVAVl~k~Dp~Gn~srW~Vdtgg~~GyvPs~yLe~~~~~~   80 (92)
T 1ug1_A           17 EKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPRR   80 (92)
T ss_dssp             GGEEEESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEECSSSEEEEEGGGEEECCCCS
T ss_pred             hheEEeccCcCCCCceeeeecCCCEEEEEecCCCCCCCcceEEECCCcEEeeEhhhceEcccCC
Confidence            445667777777888999999999999999764    355656669999999999999987543

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=98.75  E-value=8.4e-09  Score=76.93  Aligned_cols=51  Identities=18%  Similarity=0.457  Sum_probs=45.6

Q ss_pred             cEEEEEeeecCCCCCC-------cccCCCCEEEEEECCCCCeeEEEE---CCeEEEEcCCc
Q psy6450          24 NLFVVLYNFKSRHADE-------LDLKPGYKVTVIDTSDQNWWKGKC---MGRVGYFPSNY   74 (139)
Q Consensus        24 ~~~~al~~~~~~~~~e-------Ls~~~gd~i~v~~~~~~~w~~~~~---~g~~G~~P~~~   74 (139)
                      -+++|+|||.+..+++       |+|++||++.|++..+++||.++.   +|..|+||+++
T Consensus        39 ~~vrAlfdY~~~~d~d~P~~e~~LsF~~GDiL~V~~~~d~~WWqar~~~~~g~~GlIPS~~   99 (337)
T 4dey_A           39 FAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPV   99 (337)
T ss_dssp             EEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHH
T ss_pred             EEEEEccccCCCCCCCCCcccccccccCCCEEEEEecCCCCeEEEEECCCCCCccEecCHH
Confidence            3699999999987664       999999999999998899999998   46799999977

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=98.74  E-value=1.2e-08  Score=80.55  Aligned_cols=55  Identities=11%  Similarity=0.201  Sum_probs=47.7

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeC-CCeEEeeecCCEEe
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNG-ENRQGVCPLKYLQE  138 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~-~~~~G~~P~~~v~~  138 (139)
                      ...++.++|. ++.+++|+|.+||+|.+....++|||.++.. +|+.|+||++||+.
T Consensus        86 ~~~~alyd~~-~~~~~el~~~~gd~i~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~  141 (535)
T 2h8h_A           86 TTFVALYDYE-SRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAP  141 (535)
T ss_dssp             -CEEESSCBC-CCSSSBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEE
T ss_pred             cEEEEccccC-CcCCCcCCcCCCCEEEEEEecCCCceEEEECCCCcceEecchhhcc
Confidence            3578899996 8888899999999998777778999999985 57999999999986

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens}

Probab=98.73  E-value=9.6e-09  Score=70.86  Aligned_cols=54  Identities=20%  Similarity=0.108  Sum_probs=44.2

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeC--CCeEEeeecCCEEe
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNG--ENRQGVCPLKYLQE  138 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~--~~~~G~~P~~~v~~  138 (139)
                      ...+|.++|. +..+++|+|.+||+|.+.... +|||.++..  +|+.|+||++||+.
T Consensus        18 ~~~~Alydf~-~~~~~eLs~~~Gd~i~v~~~~-~~W~~g~~~~~~g~~G~fP~nyV~~   73 (184)
T 3a98_A           18 RHGVAIYNFQ-GSGAPQLSLQIGDVVRIQETC-GDWYRGYLIKHKMLQGIFPKSFIHI   73 (184)
T ss_dssp             CEEEESSCBC-CSSTTBCCBCTTCEEEEEEEE-TTEEEEEETTEEEEEEEEEGGGEEE
T ss_pred             eEEEEeeeeC-CCCCCCCCcCCCCEEEEEecC-CCEEEEEEecCCCceEEECcceEEE
Confidence            3577889996 788889999999999766554 579988873  45899999999985

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=98.71  E-value=1.9e-08  Score=77.63  Aligned_cols=55  Identities=16%  Similarity=0.309  Sum_probs=47.2

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcc-eeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGD-EVDGMVMIRNGENRQGVCPLKYLQE  138 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~-~~~g~~~~~~~~~~~G~~P~~~v~~  138 (139)
                      ..++|.++|. ++.+++|++.+||++.+... .++|||.++..+|+.|+||+|||+.
T Consensus        12 ~~~~aly~~~-~~~~~el~~~~gd~i~v~~~~~~~~ww~~~~~~g~~G~~P~~yv~~   67 (450)
T 1k9a_A           12 TECIAKYNFH-GTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQK   67 (450)
T ss_dssp             CEEEESSCBC-CSSSSBCCBCTTCEEEEEEECSSTTEEEEECTTCCEEEEEGGGEEE
T ss_pred             CEEEECCCcC-ccCCCcCCCCCCCEEEEeeccCCCCceEEEECCCceeeechhcccc
Confidence            3577889996 78888999999999976665 5679999998878999999999986

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=98.69  E-value=1.8e-08  Score=77.76  Aligned_cols=54  Identities=11%  Similarity=0.206  Sum_probs=47.2

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeC-CCeEEeeecCCEEe
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNG-ENRQGVCPLKYLQE  138 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~-~~~~G~~P~~~v~~  138 (139)
                      ..++.++|. ++.+++|+|.+||++.+....++|||.++.. +|+.|+||++||+.
T Consensus         4 ~~~al~~~~-~~~~~el~~~~gd~~~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~   58 (452)
T 1fmk_A            4 TFVALYDYE-SRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAP   58 (452)
T ss_dssp             EEEESSCBC-CCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEE
T ss_pred             EEEECCccC-CCCCCCCCccCCCEEEEeccCCCCceEEEEcCCCcccccCcccccc
Confidence            367889996 8888899999999998888778999999985 57999999999985

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=98.69  E-value=2.1e-08  Score=77.91  Aligned_cols=55  Identities=7%  Similarity=0.049  Sum_probs=47.4

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..++|.++|. +..+++|+|.+||+|.+....++|||.++.. |+.|+||++||+.+
T Consensus        31 ~~~~al~~~~-~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~-g~~G~~P~~yv~~~   85 (466)
T 2pz1_A           31 VCAEALWDHV-TMDDQELGFKAGDVIEVMDATNREWWWGRVA-DGEGWFPASFVRLR   85 (466)
T ss_dssp             EEEEESSCBC-CCCTTBCCBCTTCEEEEEECCSSSEEEEEET-TEEEEEEGGGEEEC
T ss_pred             cEEEEccccC-CCCCCcCCCCCCCEEEEEEecCCCEEEEEEC-CcEEEEehhHeeec
Confidence            3567889996 7788899999999998888778999998875 59999999999864

>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo sapiens} PDB: 2gto_A

Probab=98.68  E-value=1.1e-08  Score=62.73  Aligned_cols=46  Identities=17%  Similarity=0.239  Sum_probs=38.0

Q ss_pred             cccCCCceeeecCcEEEE--EcceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450          93 IADGESGLSLLRDQIVIQ--IGDEVDGMVMIRNGENRQGVCPLKYLQE  138 (139)
Q Consensus        93 ~~~~~~~l~~~~g~~v~~--~~~~~~g~~~~~~~~~~~G~~P~~~v~~  138 (139)
                      ......+|.+.+|+++-+  ..+.+.|||+||++.|+.|+||.+||+.
T Consensus        37 ~k~g~~dLp~~~GE~LeII~~~e~p~g~Wl~RN~~G~~GyVp~~~v~v   84 (96)
T 2gtj_A           37 VKGGKNELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKTTAVEI   84 (96)
T ss_dssp             EECTTSCCEECTTCCEEEEECTTCSSSCCEEECTTCCBCCCCGGGEEE
T ss_pred             CCCCcccCCcCCCCEEEEEEccCCCCCeEEEECCCCCCCccchhhEEE
Confidence            355677899999998833  4455579999999999999999999984

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=98.63  E-value=6.2e-08  Score=68.46  Aligned_cols=58  Identities=26%  Similarity=0.598  Sum_probs=51.1

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCC---eeEEEECCeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQN---WWKGKCMGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~---w~~~~~~g~~G~~P~~~v~~~~~   80 (139)
                      .....++++|.++.+.++.+++|+.+.++.+.+.+   ||.++..|+.|+||.+|++.+..
T Consensus       170 ~~~~~al~d~~~~~~~eLa~~~G~~i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv~~~~~  230 (239)
T 1ycs_B          170 KGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYPR  230 (239)
T ss_dssp             GGEEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEETTEEEEEEGGGEECCC-
T ss_pred             cceEEEEeccCCCCCCcccccCCCEEEEEEecCCCCCCEEEEEECCcEEEeehHHeeECCc
Confidence            34578999999999999999999999999876554   99999999999999999987754

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.62  E-value=9e-08  Score=57.91  Aligned_cols=53  Identities=23%  Similarity=0.297  Sum_probs=38.0

Q ss_pred             ceeccccccccCCCceeeecCcEEEEEcce----eCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          85 LQVTHNLQIADGESGLSLLRDQIVIQIGDE----VDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        85 ~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~----~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      .++..++. +...-++.+.+||+|.+..+.    ..+||++.. +|+.|+||++||+.+
T Consensus        20 Y~~t~~~~-~tq~~dl~l~~GdlVAVl~k~Dp~Gn~srW~Vdt-gg~~GyvPs~yLe~~   76 (92)
T 1ug1_A           20 FQAERNFN-AAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDN-GVTKGFVYSSFLKPY   76 (92)
T ss_dssp             EEESSCCC-CCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEEC-SSSEEEEEGGGEEEC
T ss_pred             EEeccCcC-CCCceeeeecCCCEEEEEecCCCCCCCcceEEEC-CCcEEeeEhhhceEc
Confidence            33444443 445667999999999666544    335666777 779999999999864

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=98.58  E-value=7.7e-08  Score=74.24  Aligned_cols=53  Identities=13%  Similarity=0.229  Sum_probs=45.2

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEe-CCCeEEeeecCCEEe
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRN-GENRQGVCPLKYLQE  138 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~-~~~~~G~~P~~~v~~  138 (139)
                      .+.+.++|. +..+++|+|.+||++.+... .+|||.+++ .+|+.|+||++||+.
T Consensus        10 ~~~al~~~~-~~~~~el~~~~gd~~~v~~~-~~~W~~~~~~~~g~~G~~P~~yv~~   63 (454)
T 1qcf_A           10 IVVALYDYE-AIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVAR   63 (454)
T ss_dssp             EEEESSCBC-CCSTTBCCBCTTCEEEEEEC-CTTEEEEEETTTCCEEEEEGGGEEE
T ss_pred             EEEECcccC-CcCCCcCcccCCCEEEEEec-CCCCeEEEECCCCceEEecchhccc
Confidence            467889996 78888999999999976665 389999996 577999999999985

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=98.53  E-value=7.8e-08  Score=71.15  Aligned_cols=53  Identities=15%  Similarity=0.225  Sum_probs=43.4

Q ss_pred             EEEEEeeecCCCCCCcccCCCCEEEEEECCCCC---------eeEEEE-C--C---eEEEEcCCcEEe
Q psy6450          25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQN---------WWKGKC-M--G---RVGYFPSNYVIK   77 (139)
Q Consensus        25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~---------w~~~~~-~--g---~~G~~P~~~v~~   77 (139)
                      +++|+|+|.++.+++|+|++||++.|++..+++         ||.++. +  +   ..|++|.+|+.+
T Consensus         6 yVRalfdy~~~~~~eL~F~kGDil~V~dt~~~~~~~~~~~~gwW~A~~~~~~~~~~~~G~IPs~~~ae   73 (308)
T 3kfv_A            6 YIRTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPNQSRAE   73 (308)
T ss_dssp             EEEECSCBCCCSSSBCCBCTTCEEEEEEC-------------CEEEEEECTTSCEEEEEEECCHHHHH
T ss_pred             EEEEecCcCCCCcccCCCccCCEEEEccccCCCcccccccCceEEEEecCCCCCcCCCCeeechHHHH
Confidence            578999999999999999999999999977555         999988 2  2   679999988753

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=98.52  E-value=1.1e-08  Score=80.04  Aligned_cols=55  Identities=16%  Similarity=0.313  Sum_probs=0.0

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcce-eCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDE-VDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~-~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      .+++.++|. +..+++|+|.+||+|.+.... .+|||.++..+|+.|+||++||+.|
T Consensus       430 ~~~alydy~-~~~~~eLsf~~Gd~i~vl~~~~~~~Ww~g~~~~g~~G~~P~nyv~~i  485 (486)
T 3haj_A          430 RVRALYDYE-GQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVEAI  485 (486)
T ss_dssp             ---------------------------------------------------------
T ss_pred             EEEEccccC-CCCCCcCccCCCCEEEEEEecCCCCeeEEEeCCCCEEEEeHHHceeC
Confidence            577889995 888889999999999766655 4599998887679999999999875

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=98.51  E-value=1.2e-07  Score=66.06  Aligned_cols=56  Identities=45%  Similarity=0.869  Sum_probs=51.0

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEec
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV   78 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   78 (139)
                      ...++++|+|.++...+++|++|+++.+....+.+||.+...|..|++|.+|+...
T Consensus        14 ~~~~~al~d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~~g~~gl~p~~~v~~~   69 (222)
T 3ehr_A           14 VKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ   69 (222)
T ss_dssp             CEEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEETTEEEEEEHHHHHHH
T ss_pred             ceEEEEeCCcCCCCCCcccccCCCEEEEeccccchhHhcccCCcceeechhhcccc
Confidence            34689999999999999999999999999998899999999999999999887543

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=98.47  E-value=1.1e-07  Score=72.56  Aligned_cols=53  Identities=15%  Similarity=0.257  Sum_probs=46.5

Q ss_pred             EEEEEeeecCCCCCCcccCCCCEEEEEEC---CCCCeeEEEE-CC-----eEEEEcCCcEEe
Q psy6450          25 LFVVLYNFKSRHADELDLKPGYKVTVIDT---SDQNWWKGKC-MG-----RVGYFPSNYVIK   77 (139)
Q Consensus        25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~---~~~~w~~~~~-~g-----~~G~~P~~~v~~   77 (139)
                      +++|+|+|.+..+.+|+|++||++.|++.   .+.+||.++. +.     ..|+||.+|+.+
T Consensus       108 ~vral~dy~~~~~~~Lsf~~Gdil~V~~~~~~~d~~wW~a~~~~~~~~~~~~G~IPs~~~~e  169 (391)
T 3tsz_A          108 YIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAE  169 (391)
T ss_dssp             EEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGSSSEEEEEEECGGGCEEEEEEEECHHHHH
T ss_pred             ccccccccCCCCCCcceEccCCEEEEEeccCCCCCCeEEEEEeCCCCCcccCCEecCHHHHH
Confidence            57899999999999999999999999998   5678999998 22     489999999864

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=98.42  E-value=1.9e-07  Score=76.23  Aligned_cols=54  Identities=22%  Similarity=0.604  Sum_probs=47.1

Q ss_pred             cEEEEEeeecCCCCCC-----cccCCCCEEEEEECCCCCeeEEEEC------CeEEEEcCCcEEe
Q psy6450          24 NLFVVLYNFKSRHADE-----LDLKPGYKVTVIDTSDQNWWKGKCM------GRVGYFPSNYVIK   77 (139)
Q Consensus        24 ~~~~al~~~~~~~~~e-----Ls~~~gd~i~v~~~~~~~w~~~~~~------g~~G~~P~~~v~~   77 (139)
                      -+++|+|+|.+..+++     |+|++||++.|++..+.+||.++..      +..|+||.+|+.+
T Consensus       428 ~~vrAl~dy~~~~d~~~p~~~LsF~~GDil~v~~~~~~~WW~a~~~~~~~~~~~~G~iPs~~~~e  492 (721)
T 2xkx_A          428 FYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVE  492 (721)
T ss_pred             eeEEEeeccCcCCCCCCccccccccCCCEEEEeecCCCCeEEEEECCCCCccCccceeecHHHHH
Confidence            3578999999998888     9999999999999988999999982      3469999998854

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=98.40  E-value=3.3e-07  Score=71.40  Aligned_cols=53  Identities=15%  Similarity=0.263  Sum_probs=46.8

Q ss_pred             EEEEEeeecCCCCCCcccCCCCEEEEEEC---CCCCeeEEEE---CC---eEEEEcCCcEEe
Q psy6450          25 LFVVLYNFKSRHADELDLKPGYKVTVIDT---SDQNWWKGKC---MG---RVGYFPSNYVIK   77 (139)
Q Consensus        25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~---~~~~w~~~~~---~g---~~G~~P~~~v~~   77 (139)
                      +++|+|+|.+..+.+|+|++||++.|++.   .+.+||+++.   .+   ..|+||.+|+.+
T Consensus       100 yVralfdy~~~~~~~LsF~~GDIL~V~d~~~~~d~~wW~A~~~~~~~~~~~~GlIPs~~~~e  161 (468)
T 3shw_A          100 YIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAE  161 (468)
T ss_dssp             EEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGCTTEEEEEEECTTSCEEEEEEEECHHHHH
T ss_pred             ccccccCcCCCCCCCceEccCCEEEEeecccCCCCCeEEEEEcCCCCcccccceecCHHHHH
Confidence            57899999999999999999999999998   5678999987   33   589999999864

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=98.39  E-value=4.6e-08  Score=72.08  Aligned_cols=52  Identities=13%  Similarity=0.133  Sum_probs=42.3

Q ss_pred             ceeccccccccCCC-----ceeeecCcEEEEEcceeCCEEEEEeCC-----CeEEeeecCCEE
Q psy6450          85 LQVTHNLQIADGES-----GLSLLRDQIVIQIGDEVDGMVMIRNGE-----NRQGVCPLKYLQ  137 (139)
Q Consensus        85 ~~~~~~~~~~~~~~-----~l~~~~g~~v~~~~~~~~g~~~~~~~~-----~~~G~~P~~~v~  137 (139)
                      .++.++|. +..++     +|+|.+||++.+....++|||.++..+     ++.|+||++|++
T Consensus         4 vrAlydy~-~~~~~~~p~~eLsf~~GDil~V~~~~d~~WW~a~~~~~~~~~~~~G~iPsny~~   65 (295)
T 1kjw_A            4 IRALFDYD-KTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRV   65 (295)
T ss_dssp             EEESSCBC-HHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHH
T ss_pred             EEEeeccC-CCCCCCCCCcCCcCCCCCEEEEEEeCCCCeEEEEECCCCCccCceeEeecHHHH
Confidence            46778885 44454     899999999988877789999998764     378999999985

>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}

Probab=98.38  E-value=7e-07  Score=65.38  Aligned_cols=55  Identities=16%  Similarity=0.339  Sum_probs=46.0

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEecCCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~~   81 (139)
                      ..++|+|||.+.   ++++.+|+.+.+++..+..||.++. +|.+|++|++|+....+.
T Consensus       199 ~~v~al~dy~~~---e~~~~kge~~~l~~~s~~~wW~v~~~~G~~g~vPs~~~~ip~p~  254 (283)
T 3pe0_A          199 LPLLAVCDYKQV---EVTVHKGDECQLVGPAQPSHWKVLSSSGSEAAVPSVCFLVPPPN  254 (283)
T ss_dssp             EEEEECSCEECS---SCEECTTCEEEEEEECSTTEEEEECC---EEEEEGGGEECCSCC
T ss_pred             ceEEeecCccCC---cccccCCCEEEEeeCCCCCceEEEcCCCCEeeccceEEeeCCCC
Confidence            459999999875   7999999999999988888999998 788999999999876654

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=98.38  E-value=3.7e-07  Score=71.27  Aligned_cols=54  Identities=19%  Similarity=0.282  Sum_probs=44.3

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcce-eCCEEEEEeCCCeEEeeecCCEEe
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDE-VDGMVMIRNGENRQGVCPLKYLQE  138 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~-~~g~~~~~~~~~~~G~~P~~~v~~  138 (139)
                      ....+.++|. +..+++|+|.+||++.+.... ..|||.++.. ++.|+||+|||+.
T Consensus        44 ~~~~alyd~~-~~~~~els~~~gd~~~v~~~~~~~~w~~~~~~-~~~G~~P~~yv~~   98 (495)
T 1opk_A           44 NLFVALYDFV-ASGDNTLSITKGEKLRVLGYNHNGEWCEAQTK-NGQGWVPSNYITP   98 (495)
T ss_dssp             CEEEESSCBC-CCSTTBCCBCTTCEEEEEEECTTSSEEEEECS-SCEEEEEGGGEEE
T ss_pred             cEEEEeCCcC-CCCCCCCCccCCCEEEEeecCCCCCceeeeec-CCcceeccccccc
Confidence            3577889996 788889999999999766544 6788888766 4789999999985

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=98.30  E-value=6.1e-07  Score=66.01  Aligned_cols=49  Identities=27%  Similarity=0.643  Sum_probs=37.0

Q ss_pred             EEEEEeeecCCCCC-----CcccCCCCEEEEEECCCCCeeEEEE---CC---eEEEEcCC
Q psy6450          25 LFVVLYNFKSRHAD-----ELDLKPGYKVTVIDTSDQNWWKGKC---MG---RVGYFPSN   73 (139)
Q Consensus        25 ~~~al~~~~~~~~~-----eLs~~~gd~i~v~~~~~~~w~~~~~---~g---~~G~~P~~   73 (139)
                      +++|+|||.+..++     .|+|++||++.|.+..+++||.++.   ++   ..|++|+.
T Consensus         7 yvRa~fdY~~~~D~~~P~~gL~F~~gDiL~V~~~~d~~wWqA~~v~~~~~~~~~GlIPS~   66 (292)
T 3tvt_A            7 YVRALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVPSK   66 (292)
T ss_dssp             EEEECSCBCC---------CCCBCTTCEEEEEECCSSSEEEECCCCC--------EEECH
T ss_pred             EEEEeccCCCCCCCCCCCCcCCcCCCCEEEEeecCCCCeEEEEEeCCCCCccceeEEeCh
Confidence            58999999998765     5999999999999999999999986   22   37999985

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}

Probab=98.21  E-value=3.9e-07  Score=73.71  Aligned_cols=56  Identities=14%  Similarity=0.110  Sum_probs=43.5

Q ss_pred             cceecccccc--ccCCCceeeecCcEEEEEcc-----eeCCEEEEEe-CCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQI--ADGESGLSLLRDQIVIQIGD-----EVDGMVMIRN-GENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~--~~~~~~l~~~~g~~v~~~~~-----~~~g~~~~~~-~~~~~G~~P~~~v~~~  139 (139)
                      -+.|.++|..  +.....|+|++||+|++...     .++|||.+++ .+|+.|+||++||+.+
T Consensus       575 ~~~Al~d~~~~~~~~~~~L~f~kGDlI~l~~~~~~~~~~~~W~~G~~~~~g~~G~fP~~~V~~l  638 (655)
T 3pvl_A          575 YVVALQDNPNPAGEESGFLSFAKGDLIILDHDTGEQVMNSGWANGINERTKQRGDFPTDCVYVM  638 (655)
T ss_dssp             EEEESSCCCC-----CCBCCCCTTCEEEESSCCHHHHHHSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             hhhHHhhcccCCCCCCCcccccCCCEEEEccccCcccCCCCeEEEEeCCCCceEEeEhhhEEEC
Confidence            4667788852  35566799999999987776     4789999885 5779999999999864

>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}

Probab=97.98  E-value=9.3e-06  Score=63.00  Aligned_cols=54  Identities=20%  Similarity=0.287  Sum_probs=48.2

Q ss_pred             EEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEecCCC
Q psy6450          25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~~   81 (139)
                      .++|+|||..   .++++.+||.+++.+..+..||.++. +|..|+||+.|+....+.
T Consensus       285 ~V~alcdy~~---~e~~i~kge~~~L~~ns~~~~W~V~~~~G~~~~vPavcf~ipppd  339 (450)
T 3r6n_A          285 ILRALCDYKQ---DQKIVHKGDECILKDNNERSKWYVTGPGGVDMLVPSVGLIIPPPN  339 (450)
T ss_dssp             EEEESSCEEE---TTEEECTTCEEEEEECSSSSEEEEECSSSCCEEEEGGGEECCSCC
T ss_pred             eEEEeccccC---CeeeEecCCEEEEecCCCCCceEEecCCCCeeccceeEEecCCCC
Confidence            4899999994   78899999999999999899999998 688999999999876544

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=97.82  E-value=2.8e-05  Score=54.67  Aligned_cols=51  Identities=14%  Similarity=0.190  Sum_probs=39.1

Q ss_pred             eeccccccccCCCceeeecCcEEEEEcceeC---CEEEEEeCCCeEEeeecCCEEe
Q psy6450          86 QVTHNLQIADGESGLSLLRDQIVIQIGDEVD---GMVMIRNGENRQGVCPLKYLQE  138 (139)
Q Consensus        86 ~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~---g~~~~~~~~~~~G~~P~~~v~~  138 (139)
                      .+.+++. +....++.+..|+++.+.....+   |||.++.. ++.|+||.+||+.
T Consensus       174 ~al~d~~-~~~~~eLa~~~G~~i~vl~~~~~~~~~Ww~~~~~-~~~G~~P~~yv~~  227 (239)
T 1ycs_B          174 YALWDYE-PQNDDELPMKEGDCMTIIHREDEDEIEWWWARLN-DKEGYVPRNLLGL  227 (239)
T ss_dssp             EESSCBC-CSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEET-TEEEEEEGGGEEC
T ss_pred             EEEeccC-CCCCCcccccCCCEEEEEEecCCCCCCEEEEEEC-CcEEEeehHHeeE
Confidence            4555664 66777899999999866655444   49988865 5999999999985

>3npf_A Putative dipeptidyl-peptidase VI; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: CSA GOL; 1.72A {Bacteroides ovatus} PDB: 3pvq_A

Probab=97.72  E-value=0.00035  Score=51.42  Aligned_cols=96  Identities=11%  Similarity=0.150  Sum_probs=66.2

Q ss_pred             cccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEecCCCC-------ccceecc----ccccccC--CCceeeecC
Q psy6450          40 LDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIKVQPGE-------RPLQVTH----NLQIADG--ESGLSLLRD  105 (139)
Q Consensus        40 Ls~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~~~-------~~~~~~~----~~~~~~~--~~~l~~~~g  105 (139)
                      -.+..|+.+.|+++ + +|++.+. +|..||++..++..+....       ....+..    .+..+..  ..-..+..|
T Consensus        35 ~~l~~G~~v~Vl~~-~-gW~~V~~~dG~~GwV~~~~l~~~~~~~~~~~~~~~~~vvt~~~~~vr~~p~~~~~~~~~l~~G  112 (306)
T 3npf_A           35 TQALLGMPVKVLQY-N-GWYEIQTPDDYTGWVHRMVITPMSKERYDEWNRAEKIVVTSHYGFAYEKPDESSQPVSDVVAG  112 (306)
T ss_dssp             EEEETTCEEEEEEE-S-SEEEEECTTSCEEEEEGGGEEEECHHHHHHHHHSCEEEECSSEEEEESSSSTTSCEEEEEETT
T ss_pred             EEEcCCCEEEEEEE-C-CEEEEEcCCCCEEEEEhHHeeecChhhhhhhccCCcEEEeecceeEEeCCCCCCceEEEEcCC
Confidence            55778999999987 3 5999998 8999999999998754210       1111111    1111111  112677888


Q ss_pred             cEEEEEcceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450         106 QIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQE  138 (139)
Q Consensus       106 ~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~  138 (139)
                      ..+.+.. ..++|+.++..+|+.|+++..++..
T Consensus       113 t~v~v~~-~~~~W~kV~~pdG~~GyV~~~~l~~  144 (306)
T 3npf_A          113 NRLKWEG-SKGHFYQVSYPDGRKAYLSKSISQP  144 (306)
T ss_dssp             CEEEEEE-EETTEEEEECTTSCEEEEETTSEEE
T ss_pred             CEEEEEe-ecCCEEEEEcCCCCeEEEEeeccce
Confidence            8885443 4689999998888999999999864

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=97.62  E-value=2.1e-05  Score=59.99  Aligned_cols=53  Identities=13%  Similarity=0.181  Sum_probs=42.0

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcc---eeCCEEEEEeCCC-----eEEeeecCCEE
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGD---EVDGMVMIRNGEN-----RQGVCPLKYLQ  137 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~---~~~g~~~~~~~~~-----~~G~~P~~~v~  137 (139)
                      ..++.++|. +..+.+|+|.+||++.+...   .+.+||..+..+.     +.|++|++|++
T Consensus       108 ~vral~dy~-~~~~~~Lsf~~Gdil~V~~~~~~~d~~wW~a~~~~~~~~~~~~G~IPs~~~~  168 (391)
T 3tsz_A          108 YIRTHFEYE-KESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRA  168 (391)
T ss_dssp             EEEECSCBC-CSSTTBCCBCTTCEEEEEESSGGGSSSEEEEEEECGGGCEEEEEEEECHHHH
T ss_pred             ccccccccC-CCCCCcceEccCCEEEEEeccCCCCCCeEEEEEeCCCCCcccCCEecCHHHH
Confidence            356788886 56677899999999977766   5689999886553     58999999874

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=97.61  E-value=4.6e-05  Score=56.85  Aligned_cols=52  Identities=10%  Similarity=0.017  Sum_probs=39.9

Q ss_pred             cceeccccccccCC------CceeeecCcEEEEEcceeCCEEEEEeC--CCeEEeeecCC
Q psy6450          84 PLQVTHNLQIADGE------SGLSLLRDQIVIQIGDEVDGMVMIRNG--ENRQGVCPLKY  135 (139)
Q Consensus        84 ~~~~~~~~~~~~~~------~~l~~~~g~~v~~~~~~~~g~~~~~~~--~~~~G~~P~~~  135 (139)
                      .+++.++|.....+      .+|+|.+||++.+....+++||..+..  +|+.|+||+++
T Consensus        40 ~vrAlfdY~~~~d~d~P~~e~~LsF~~GDiL~V~~~~d~~WWqar~~~~~g~~GlIPS~~   99 (337)
T 4dey_A           40 AVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPV   99 (337)
T ss_dssp             EEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHH
T ss_pred             EEEEccccCCCCCCCCCcccccccccCCCEEEEEecCCCCeEEEEECCCCCCccEecCHH
Confidence            46678888633222      259999999998888878899999873  45789999875

>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}

Probab=97.61  E-value=6.7e-05  Score=54.83  Aligned_cols=52  Identities=8%  Similarity=0.104  Sum_probs=40.9

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQE  138 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~  138 (139)
                      ..+.+.++|..    .++++.+|+.+++.......||.++..+|+.|++|++|+..
T Consensus       199 ~~v~al~dy~~----~e~~~~kge~~~l~~~s~~~wW~v~~~~G~~g~vPs~~~~i  250 (283)
T 3pe0_A          199 LPLLAVCDYKQ----VEVTVHKGDECQLVGPAQPSHWKVLSSSGSEAAVPSVCFLV  250 (283)
T ss_dssp             EEEEECSCEEC----SSCEECTTCEEEEEEECSTTEEEEECC---EEEEEGGGEEC
T ss_pred             ceEEeecCccC----CcccccCCCEEEEeeCCCCCceEEEcCCCCEeeccceEEee
Confidence            35667788853    26999999999888887788999999999999999999864

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=97.51  E-value=3.5e-05  Score=63.00  Aligned_cols=52  Identities=15%  Similarity=0.172  Sum_probs=41.5

Q ss_pred             ceeccccccccCCCc-----eeeecCcEEEEEcceeCCEEEEEeCC-----CeEEeeecCCEE
Q psy6450          85 LQVTHNLQIADGESG-----LSLLRDQIVIQIGDEVDGMVMIRNGE-----NRQGVCPLKYLQ  137 (139)
Q Consensus        85 ~~~~~~~~~~~~~~~-----l~~~~g~~v~~~~~~~~g~~~~~~~~-----~~~G~~P~~~v~  137 (139)
                      .++.++|. +..+++     |+|.+||++.+....+++||..+..+     ++.|+||++|++
T Consensus       430 vrAl~dy~-~~~d~~~p~~~LsF~~GDil~v~~~~~~~WW~a~~~~~~~~~~~~G~iPs~~~~  491 (721)
T 2xkx_A          430 IRALFDYD-KTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRV  491 (721)
T ss_pred             EEEeeccC-cCCCCCCccccccccCCCEEEEeecCCCCeEEEEECCCCCccCccceeecHHHH
Confidence            46788886 556656     99999999987777789999988653     356999999974

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=97.47  E-value=5.1e-05  Score=59.14  Aligned_cols=53  Identities=13%  Similarity=0.184  Sum_probs=41.0

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcc---eeCCEEEEEeCC--C---eEEeeecCCEE
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGD---EVDGMVMIRNGE--N---RQGVCPLKYLQ  137 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~---~~~g~~~~~~~~--~---~~G~~P~~~v~  137 (139)
                      ..++.++|. +....+|+|.+||++.+...   .+.+||.++..+  +   +.|+||++|++
T Consensus       100 yVralfdy~-~~~~~~LsF~~GDIL~V~d~~~~~d~~wW~A~~~~~~~~~~~~GlIPs~~~~  160 (468)
T 3shw_A          100 YIRTHFEYE-KESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRA  160 (468)
T ss_dssp             EEEECSCBC-CSSTTBCCBCTTCEEEEEESSGGGCTTEEEEEEECTTSCEEEEEEEECHHHH
T ss_pred             ccccccCcC-CCCCCCceEccCCEEEEeecccCCCCCeEEEEEcCCCCcccccceecCHHHH
Confidence            356778885 55677899999999977766   567999988643  2   68999999874

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=97.33  E-value=0.00012  Score=54.15  Aligned_cols=51  Identities=16%  Similarity=0.247  Sum_probs=38.2

Q ss_pred             ceeccccccccCCCceeeecCcEEEEEcceeCC---------EEEEEeCC-----CeEEeeecCCE
Q psy6450          85 LQVTHNLQIADGESGLSLLRDQIVIQIGDEVDG---------MVMIRNGE-----NRQGVCPLKYL  136 (139)
Q Consensus        85 ~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g---------~~~~~~~~-----~~~G~~P~~~v  136 (139)
                      +++.++|. +....+|+|.+||++.+.+...+|         ||.++..+     ++.|++|.+|+
T Consensus         7 VRalfdy~-~~~~~eL~F~kGDil~V~dt~~~~~~~~~~~~gwW~A~~~~~~~~~~~~G~IPs~~~   71 (308)
T 3kfv_A            7 IRTHFELE-PSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPNQSR   71 (308)
T ss_dssp             EEECSCBC-CCSSSBCCBCTTCEEEEEEC-------------CEEEEEECTTSCEEEEEEECCHHH
T ss_pred             EEEecCcC-CCCcccCCCccCCEEEEccccCCCcccccccCceEEEEecCCCCCcCCCCeeechHH
Confidence            56788885 778889999999999777666555         99988653     36799999875

>3h41_A NLP/P60 family protein; NLPC/P60 family protein, structural genomics, joint center F structural genomics, JCSG; HET: DGL PG4; 1.79A {Bacillus cereus atcc 10987}

Probab=97.01  E-value=0.0056  Score=45.15  Aligned_cols=96  Identities=16%  Similarity=0.099  Sum_probs=63.2

Q ss_pred             cccCCCCEEEEEECCCCCeeEEEE---------CCeEEEEcCCcEEecCC-----CCccceecc----cccccc-CCCce
Q psy6450          40 LDLKPGYKVTVIDTSDQNWWKGKC---------MGRVGYFPSNYVIKVQP-----GERPLQVTH----NLQIAD-GESGL  100 (139)
Q Consensus        40 Ls~~~gd~i~v~~~~~~~w~~~~~---------~g~~G~~P~~~v~~~~~-----~~~~~~~~~----~~~~~~-~~~~l  100 (139)
                      -.+..|+.+.|+++ +.+|.+++.         +|..||++..++.....     ......+..    .+..+. ...-.
T Consensus        62 tqll~Ge~V~Vl~~-~~~W~~V~~~~q~~~~~~dGy~GWV~~~~L~~~~~~~~~~~~~~~~Vt~~~~~l~~~p~~~~~~~  140 (311)
T 3h41_A           62 TQALLGQEVTVVDK-KGDWVKVLVHGQPTPRNEEGYPGWMPEKQLTYNQEFADKTNEPFVLVTKPTAILYINPSEKHKSL  140 (311)
T ss_dssp             EEEETTCEEEEEEE-ETTEEEEEETTCCBTTBSSCEEEEEEGGGEECCHHHHHTTTSCEEEECSSEEEEEESSCTTCCEE
T ss_pred             eeecCCCEEEEEEe-eCCEEEEEECCcccccCCCCcEEEEEHHHcCccccccccccCCeEEEEeCceEEeccCCCCCceE
Confidence            34556999999986 478999985         78899999999875110     111111111    111111 11127


Q ss_pred             eeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEE
Q psy6450         101 SLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQ  137 (139)
Q Consensus       101 ~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~  137 (139)
                      .+..|..+-+... .++|+.+...+|+.|++...++.
T Consensus       141 ~l~~Gt~Lpv~~e-~~~w~~V~~p~G~~G~V~~~~l~  176 (311)
T 3h41_A          141 EVSYNTRLPLLSE-DTISYRVLLPNGQKAWLRKNDGT  176 (311)
T ss_dssp             EEETTCEEEEEEE-CSSEEEEECTTSCEEEEEGGGEE
T ss_pred             EEeCCCEEEEEee-cCCEEEEECCCCccceecccccc
Confidence            7888888854432 48999999888899999988775

>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}

Probab=96.96  E-value=0.00089  Score=51.94  Aligned_cols=52  Identities=8%  Similarity=-0.029  Sum_probs=44.9

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQE  138 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~  138 (139)
                      ..+.+.++|.    ..+.++.+||.+++.......||.|+..+|..|+||+.|+-.
T Consensus       284 ~~V~alcdy~----~~e~~i~kge~~~L~~ns~~~~W~V~~~~G~~~~vPavcf~i  335 (450)
T 3r6n_A          284 IILRALCDYK----QDQKIVHKGDECILKDNNERSKWYVTGPGGVDMLVPSVGLII  335 (450)
T ss_dssp             CEEEESSCEE----ETTEEECTTCEEEEEECSSSSEEEEECSSSCCEEEEGGGEEC
T ss_pred             ceEEEecccc----CCeeeEecCCEEEEecCCCCCceEEecCCCCeeccceeEEec
Confidence            4567788886    246999999999999998899999999999999999998753

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=96.92  E-value=0.00071  Score=49.64  Aligned_cols=49  Identities=16%  Similarity=0.289  Sum_probs=32.4

Q ss_pred             ceeccccccccCC-----CceeeecCcEEEEEcceeCCEEEEEeC--C---CeEEeeecC
Q psy6450          85 LQVTHNLQIADGE-----SGLSLLRDQIVIQIGDEVDGMVMIRNG--E---NRQGVCPLK  134 (139)
Q Consensus        85 ~~~~~~~~~~~~~-----~~l~~~~g~~v~~~~~~~~g~~~~~~~--~---~~~G~~P~~  134 (139)
                      +++.++|. +..+     .+|+|.+||++.+....+++||..+..  +   .+.|++|+.
T Consensus         8 vRa~fdY~-~~~D~~~P~~gL~F~~gDiL~V~~~~d~~wWqA~~v~~~~~~~~~GlIPS~   66 (292)
T 3tvt_A            8 VRALFDYD-PNRDDGLPSRGLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVPSK   66 (292)
T ss_dssp             EEECSCBC-C---------CCCBCTTCEEEEEECCSSSEEEECCCCC--------EEECH
T ss_pred             EEEeccCC-CCCCCCCCCCcCCcCCCCEEEEeecCCCCeEEEEEeCCCCCccceeEEeCh
Confidence            45666775 3322     269999999998888888999988853  2   247999985

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=96.50  E-value=0.002  Score=44.24  Aligned_cols=52  Identities=12%  Similarity=0.137  Sum_probs=42.7

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEE
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQ  137 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~  137 (139)
                      .+++.++|. ++...++.+.+|+++.+......+||..... ++.|++|.+|++
T Consensus        16 ~~~al~d~~-~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~~-g~~gl~p~~~v~   67 (222)
T 3ehr_A           16 VFRALYTFE-PRTPDELYIEEGDIIYITDMSDTNWWKGTSK-GRTGLIPSNYVA   67 (222)
T ss_dssp             EEEESSCCC-CSSTTBCCCCTTCEEEEEECCSSSEEEEEET-TEEEEEEHHHHH
T ss_pred             EEEEeCCcC-CCCCCcccccCCCEEEEeccccchhHhcccC-Ccceeechhhcc
Confidence            456778885 7778899999999998787778899977665 499999998864

>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}

Probab=95.89  E-value=0.026  Score=32.59  Aligned_cols=40  Identities=28%  Similarity=0.551  Sum_probs=33.3

Q ss_pred             cccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCC
Q psy6450          40 LDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        40 Ls~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   80 (139)
                      -.+.+|+.+.+++.. ++|++.+..|..||+...|+.....
T Consensus        25 ~~l~~G~~v~v~~~~-~~W~kV~~~g~~GwV~~~yl~~~~~   64 (74)
T 2krs_A           25 GTLRNNDKVEIIKEV-DGWYEIRFNGKVGYASKSYITIVNE   64 (74)
T ss_dssp             EEEETTCEEEEEEEE-TTEEEEEETTEEEEECSSSEEESSS
T ss_pred             EEECCCCEEEEEEEe-CCEEEEEECCeEEEEEhHHcCCCCC
Confidence            357789999998864 6899999999999999999986553

>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A

Probab=95.84  E-value=0.023  Score=33.03  Aligned_cols=37  Identities=19%  Similarity=0.319  Sum_probs=28.9

Q ss_pred             eeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450         100 LSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQE  138 (139)
Q Consensus       100 l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~  138 (139)
                      -.+..|+.|.+... .++|+.++. +|+.||+...||+.
T Consensus        27 ~~l~~G~~v~vl~~-~~~W~kV~~-~g~~GwV~~~yl~~   63 (76)
T 2kt8_A           27 GSLSGNTKVTIVGE-EGAFYKIEY-KGSHGYVAKEYIKD   63 (76)
T ss_dssp             EEECTTCEEEEEEE-ETTEEEEEE-TTEEEEEEGGGEEE
T ss_pred             EEECCCCEEEEEEE-eCCEEEEEE-CCEEEEEEhHHhCc
Confidence            45667887755543 589999998 67999999999975

>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}

Probab=95.76  E-value=0.038  Score=31.83  Aligned_cols=37  Identities=27%  Similarity=0.318  Sum_probs=29.3

Q ss_pred             eeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450         100 LSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQE  138 (139)
Q Consensus       100 l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~  138 (139)
                      -.+.+|+.+.+..+ .+||+.++.. |+.||+...||+.
T Consensus        25 ~~l~~G~~v~v~~~-~~~W~kV~~~-g~~GwV~~~yl~~   61 (74)
T 2krs_A           25 GTLRNNDKVEIIKE-VDGWYEIRFN-GKVGYASKSYITI   61 (74)
T ss_dssp             EEEETTCEEEEEEE-ETTEEEEEET-TEEEEECSSSEEE
T ss_pred             EEECCCCEEEEEEE-eCCEEEEEEC-CeEEEEEhHHcCC
Confidence            45677887765543 5799999986 6999999999975

>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A

Probab=95.71  E-value=0.023  Score=33.04  Aligned_cols=40  Identities=23%  Similarity=0.421  Sum_probs=33.5

Q ss_pred             cccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCC
Q psy6450          40 LDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        40 Ls~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   80 (139)
                      -.+.+|+.+.+++.. ++|++.+.+|..||+...|+.....
T Consensus        27 ~~l~~G~~v~vl~~~-~~W~kV~~~g~~GwV~~~yl~~~~~   66 (76)
T 2kt8_A           27 GSLSGNTKVTIVGEE-GAFYKIEYKGSHGYVAKEYIKDIKD   66 (76)
T ss_dssp             EEECTTCEEEEEEEE-TTEEEEEETTEEEEEEGGGEEEEEC
T ss_pred             EEECCCCEEEEEEEe-CCEEEEEECCEEEEEEhHHhCcCCC
Confidence            357789999999864 6899999999999999999987544

>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}

Probab=95.57  E-value=0.0061  Score=34.89  Aligned_cols=37  Identities=24%  Similarity=0.293  Sum_probs=27.7

Q ss_pred             eeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450         100 LSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQE  138 (139)
Q Consensus       100 l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~  138 (139)
                      -.+.+|+.+.+..+ .++|+.++. +|+.||+...||+.
T Consensus        26 ~~l~~G~~v~v~~~-~~~W~~V~~-~G~~GwV~~~~l~~   62 (70)
T 2kq8_A           26 GALPQGQKVQVISE-NSGWSKINY-NGQTGYIGTRYLSK   62 (70)
T ss_dssp             CCCCSSSSCCCCEE-ETTEEEEEE-TTEEEEEETTSCSC
T ss_pred             EEECCCCEEEEEEe-cCCEEEEEE-CCEEEEEEhHHccc
Confidence            34566776644433 589999998 77999999999864

>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}

Probab=94.65  E-value=0.01  Score=33.98  Aligned_cols=38  Identities=34%  Similarity=0.622  Sum_probs=31.1

Q ss_pred             ccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecC
Q psy6450          41 DLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQ   79 (139)
Q Consensus        41 s~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   79 (139)
                      .+.+|+.+.+++. .++|++.+.+|..||+...|+....
T Consensus        27 ~l~~G~~v~v~~~-~~~W~~V~~~G~~GwV~~~~l~~~~   64 (70)
T 2kq8_A           27 ALPQGQKVQVISE-NSGWSKINYNGQTGYIGTRYLSKLE   64 (70)
T ss_dssp             CCCSSSSCCCCEE-ETTEEEEEETTEEEEEETTSCSCCC
T ss_pred             EECCCCEEEEEEe-cCCEEEEEECCEEEEEEhHHccchh
Confidence            4677888888775 4689999999999999999987544

>1wfw_A Kalirin-9A; SH3 domain, neuron-specific GDP/GTP exchange factor, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.34.2.1

Probab=94.28  E-value=0.22  Score=28.31  Aligned_cols=54  Identities=17%  Similarity=0.249  Sum_probs=42.2

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE------CCeEEEEcCCcEEe
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC------MGRVGYFPSNYVIK   77 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~------~g~~G~~P~~~v~~   77 (139)
                      ..+.+..+|.+-.+++++...|+++-++.....+......      ...+||+|..-+..
T Consensus         8 s~m~V~~dY~A~ke~eI~v~~ge~Vqila~nqqnm~Lv~~~a~~q~paaegWvPG~vLg~   67 (74)
T 1wfw_A            8 STMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILAP   67 (74)
T ss_dssp             CEEECCSCBCCCSSSCCCBCTTCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEGGGCCB
T ss_pred             ccEEEEeeeeeeccceeccccCcEEEEEEecCcceEEEEeecCCCCccccCcccccEecc
Confidence            3466689999999999999999999999877666655544      23689999876543

>3npf_A Putative dipeptidyl-peptidase VI; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: CSA GOL; 1.72A {Bacteroides ovatus} PDB: 3pvq_A

Probab=92.27  E-value=0.18  Score=36.86  Aligned_cols=37  Identities=14%  Similarity=0.070  Sum_probs=30.5

Q ss_pred             eeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450         100 LSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQE  138 (139)
Q Consensus       100 l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~  138 (139)
                      ..+..|+.|.+..+  +||+.|+..+|..||++..+|..
T Consensus        35 ~~l~~G~~v~Vl~~--~gW~~V~~~dG~~GwV~~~~l~~   71 (306)
T 3npf_A           35 TQALLGMPVKVLQY--NGWYEIQTPDDYTGWVHRMVITP   71 (306)
T ss_dssp             EEEETTCEEEEEEE--SSEEEEECTTSCEEEEEGGGEEE
T ss_pred             EEEcCCCEEEEEEE--CCEEEEEcCCCCEEEEEhHHeee
Confidence            56778888866655  58999999899999999999864

>1wfw_A Kalirin-9A; SH3 domain, neuron-specific GDP/GTP exchange factor, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.34.2.1

Probab=90.34  E-value=0.54  Score=26.73  Aligned_cols=52  Identities=15%  Similarity=0.245  Sum_probs=37.8

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCC-----eEEeeecCCE
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGEN-----RQGVCPLKYL  136 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~-----~~G~~P~~~v  136 (139)
                      ...+..+|+ +-.++++++..|++|-+......+.+++-..+.     ..||+|-..|
T Consensus         9 ~m~V~~dY~-A~ke~eI~v~~ge~Vqila~nqqnm~Lv~~~a~~q~paaegWvPG~vL   65 (74)
T 1wfw_A            9 TMTVIKDYY-ALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSIL   65 (74)
T ss_dssp             EEECCSCBC-CCSSSCCCBCTTCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEGGGC
T ss_pred             cEEEEeeee-eeccceeccccCcEEEEEEecCcceEEEEeecCCCCccccCcccccEe
Confidence            345677885 889999999999999666555577777664442     3389997654

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=86.77  E-value=0.0049  Score=47.82  Aligned_cols=25  Identities=16%  Similarity=0.175  Sum_probs=18.8

Q ss_pred             CCCCeeEEEE--CCeEEEEcCCcEEec
Q psy6450          54 SDQNWWKGKC--MGRVGYFPSNYVIKV   78 (139)
Q Consensus        54 ~~~~w~~~~~--~g~~G~~P~~~v~~~   78 (139)
                      .+++||+++.  .+++|++|.+|+...
T Consensus        15 ~~~~ww~~~~~~~~~~g~~P~~~v~~~   41 (463)
T 3cxl_A           15 YFQGVWKSYLYQLQQEAPHPRRITCTC   41 (463)
T ss_dssp             ---CCSCCHHHHHHHHSCCCEECCCCC
T ss_pred             CCCCEEEEEecCcCccCCCCcCccCCc
Confidence            3578999998  567899999999753

>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*

Probab=84.54  E-value=0.74  Score=29.44  Aligned_cols=27  Identities=19%  Similarity=0.555  Sum_probs=20.1

Q ss_pred             CcccCCCCEEEEEECCCC----CeeEEEECC
Q psy6450          39 ELDLKPGYKVTVIDTSDQ----NWWKGKCMG   65 (139)
Q Consensus        39 eLs~~~gd~i~v~~~~~~----~w~~~~~~g   65 (139)
                      +..|..||.+.+..+.++    +||.++...
T Consensus        58 ~~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~   88 (128)
T 3h8z_A           58 NKEITEGDEVEVYSRANEQEPCGWWLARVRM   88 (128)
T ss_dssp             --CCCTTCEEEEEECC---CCCEEEEEEEEE
T ss_pred             ccCCCCCCEEEEEecCCCCCcCccEEEEEEE
Confidence            357899999999998665    899999843

>3m1u_A Putative gamma-D-glutamyl-L-diamino acid endopept; structural genomics, joint center for structural genomics; HET: MSE MES; 1.75A {Desulfovibrio vulgaris}

Probab=83.65  E-value=9  Score=29.45  Aligned_cols=90  Identities=17%  Similarity=0.116  Sum_probs=50.9

Q ss_pred             cccCCCCEEEEEEC-CCCCeeEEEECCeEEEEcCCcEEecCCC-------Cccceeccccc---cccCCCceeeecCcEE
Q psy6450          40 LDLKPGYKVTVIDT-SDQNWWKGKCMGRVGYFPSNYVIKVQPG-------ERPLQVTHNLQ---IADGESGLSLLRDQIV  108 (139)
Q Consensus        40 Ls~~~gd~i~v~~~-~~~~w~~~~~~g~~G~~P~~~v~~~~~~-------~~~~~~~~~~~---~~~~~~~l~~~~g~~v  108 (139)
                      -.+.-|+.+.|++. .+.+|.+++...-.||++...+..+...       .....+..+..   ......-..+..|.++
T Consensus       154 SqlL~GepV~Vle~S~d~~W~~Vq~~~Y~GWV~~~~La~~~~~~~~~~~~~~~~~V~~~~~~l~~~~~~~~~~l~~Gs~L  233 (434)
T 3m1u_A          154 TAVWMGTPVFVGHATADRAWLYVETAFAAGWMPAADVARVDDAFMTRYESGSLAAILRDDTSLNGADGTHLATAHIGTVL  233 (434)
T ss_dssp             EEECTTCEEEEEEECTTSSEEEEECSSCEEEEEGGGEEECCHHHHHHHHSSCEEEECSTTEEEECTTSCEEEEECTTCEE
T ss_pred             hhhccCcEEEEEEEcCCCCEEEEEECCEEEcCcHHHccccCHHHHhhhccCCeEEEEeCceEEEcCCCCeeEEecCCCEE
Confidence            35567999999985 3678999999778999999999876531       11111111111   1111122567778777


Q ss_pred             EEEcceeCCEEEEE----eCCCeEEe
Q psy6450         109 IQIGDEVDGMVMIR----NGENRQGV  130 (139)
Q Consensus       109 ~~~~~~~~g~~~~~----~~~~~~G~  130 (139)
                      -+... .++|+.+.    ..+|+.++
T Consensus       234 pv~~e-~~~~~~V~lp~r~~~G~~~~  258 (434)
T 3m1u_A          234 PLSGA-SQVGRTVLVPVRAPEGHAVV  258 (434)
T ss_dssp             EBCC------EEEEEEEECTTSBEEE
T ss_pred             Eeecc-CCceEEEEeccccCCCcEEE
Confidence            54433 34666553    33555544

>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=80.47  E-value=0.00037  Score=51.33  Aligned_cols=25  Identities=4%  Similarity=0.138  Sum_probs=23.4

Q ss_pred             EEEEeeecCCCCCCcccCCCCEEEE
Q psy6450          26 FVVLYNFKSRHADELDLKPGYKVTV   50 (139)
Q Consensus        26 ~~al~~~~~~~~~eLs~~~gd~i~v   50 (139)
                      ++|||+|.+...++|+|++||.+.|
T Consensus       106 l~aL~~~~~~~~~eLsf~kgd~~~i  130 (302)
T 2y3a_B          106 IAEIHESRTKLEQDLRAQASDNREI  130 (302)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhcchhhhhhhhhHHHhH
Confidence            6789999999999999999999988

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	139
d1ujya_	76	b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens	2e-20
d1ng2a2	118	b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic	2e-20
d1gcqa_	56	b.34.2.1 (A:) Growth factor receptor-bound protein	9e-20
d1udla_	98	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	1e-19
d1udla_	98	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	4e-06
d1u06a1	55	b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chic	3e-19
d1k4us_	62	b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId	4e-19
d1sema_	58	b.34.2.1 (A:) Growth factor receptor-bound protein	4e-19
d1uhfa_	69	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	4e-19
d1uhca_	79	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	6e-19
d1efna_	57	b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase,	8e-19
d1gl5a_	67	b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musc	9e-19
d1awwa_	67	b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Hom	1e-18
d1awwa_	67	b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Hom	0.004
d1fmka1	64	b.34.2.1 (A:82-145) c-src protein tyrosine kinase	1e-18
d1utia_	57	b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona	2e-18
d1uj0a_	58	b.34.2.1 (A:) Signal transducing adaptor molecule	2e-18
d1opka1	57	b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domai	8e-18
d1j3ta_	74	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	1e-17
d2iima1	62	b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 d	2e-17
d1uffa_	93	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	2e-17
d2hspa_	71	b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (	2e-17
d1arka_	60	b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo	2e-17
d1gria1	56	b.34.2.1 (A:1-56) Growth factor receptor-bound pro	2e-17
d1wlpb1	53	b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic	3e-17
d1ue9a_	80	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	8e-17
d1jo8a_	58	b.34.2.1 (A:) Actin binding protein ABP1 {Baker's	8e-17
d1ckaa_	57	b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse	9e-17
d1qcfa1	65	b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Hu	1e-16
d2rn8a1	53	b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus	1e-16
d1oota_	58	b.34.2.1 (A:) Hypothetical protein YFR024c {Baker'	3e-16
d1ng2a1	58	b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic	5e-16
d1ugva_	72	b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA062	1e-15
d1ycsb2	63	b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [	2e-15
d1i07a_	59	b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus	2e-15
d1ug1a_	92	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	3e-15
d1k9aa1	71	b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (cs	4e-15
d1u5sa1	71	b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [Tax	1e-14
d1bb9a_	83	b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicu	2e-13
d2v1ra1	67	b.34.2.1 (A:10-76) Peroxisomal membrane protein Pe	1e-12
d1gcqc_	69	b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mu	3e-12
d1wfwa_	74	b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [Ta	5e-12
d1spka_	72	b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RI	8e-12
d1zuua1	56	b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyc	1e-11
d1phta_	83	b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-a	1e-11
d1wiea_	96	b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human	1e-11
d1i1ja_	106	b.34.2.1 (A:) Melanoma inhibitory activity protein	6e-11
d1kjwa1	96	b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicu	9e-11
d1t0ha_	96	b.34.2.1 (A:) SH3-like domain of the L-type calciu	3e-08
d1vyva1	145	b.34.2.1 (A:71-215) SH3-like domain of the L-type	1e-05

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.2 bits (190), Expect = 2e-20
 Identities = 22/60 (36%), Positives = 33/60 (55%)

Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERP 84
          +    +NFK  + DEL +  G  + V    +  WW+G   GR G+FPSNYV +++  ER 
Sbjct: 12 IVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSSERS 71

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.5 bits (193), Expect = 2e-20
 Identities = 18/62 (29%), Positives = 25/62 (40%)

Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGERP 84
           +V +  + +   DE+ L  G  V VI      WW  +     GYFPS Y+ K       
Sbjct: 16 PYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQDVSQ 75

Query: 85 LQ 86
           Q
Sbjct: 76 AQ 77

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.7 bits (184), Expect = 9e-20
 Identities = 23/52 (44%), Positives = 30/52 (57%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
            L++F  +   EL  + G  + V+D SD NWWKG C G+ G FP NYV  V
Sbjct: 5  QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPV 56

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.7 bits (186), Expect = 1e-19
 Identities = 20/63 (31%), Positives = 32/63 (50%)

Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG 81
          P    + +Y++ + + DEL    G  + V++  D +WW+G+  G  G FPSNYV      
Sbjct: 33 PVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDS 92

Query: 82 ERP 84
            P
Sbjct: 93 SGP 95

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (95), Expect = 4e-06
 Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 10/84 (11%)

Query: 65  GRVGYFPSNYVIKVQPGERPLQVTHNLQ---------IADGESGLSLLRDQIVIQIGDEV 115
           G+ G+FP+++V  + P         +            A+ E  LS  + Q++  +  + 
Sbjct: 7   GQKGWFPASHVKLLGPSSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDD 66

Query: 116 DGMVMIRNGENRQGVCPLKYLQEV 139
                        G+ P  Y++  
Sbjct: 67  PDWWQGEIN-GVTGLFPSNYVKMT 89

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 55

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 73.6 bits (181), Expect = 3e-19
 Identities = 16/54 (29%), Positives = 36/54 (66%)

Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
          L + LY+++ +   E+ +K G  +T++++++++WWK +   R G+ P+ YV K+
Sbjct: 2  LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 55

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.2 bits (180), Expect = 4e-19
 Identities = 12/50 (24%), Positives = 29/50 (58%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
             L+++++   ++L+ + G  + V+   ++ W +G+  G+VG FP  +V
Sbjct: 8  VEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFV 57

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

 Score = 73.2 bits (180), Expect = 4e-19
 Identities = 22/53 (41%), Positives = 31/53 (58%)

Query: 23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          T     L++F  + + EL  K G  +T+I+  D NWW+G+   R G FPSNYV
Sbjct: 2  TKFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (181), Expect = 4e-19
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG 81
          ++ LY + S    +L    G ++ V       WW G    R G FPSNYV     G
Sbjct: 11 YIALYPYSSVEPGDLTFTEGEEILVTQKDG-EWWTGSIGDRSGIFPSNYVKPKDSG 65

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.4 bits (180), Expect = 6e-19
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQ----NWWKGKCMGRVGYFPSNYVIK 77
             ++  +Y FK+R+ +EL +    K+ +++  D      WW  +  G+ GY PSNY+ K
Sbjct: 12 GNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRK 71

Query: 78 VQPG 81
           + G
Sbjct: 72 TESG 75

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.4 bits (178), Expect = 8e-19
 Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 2/56 (3%)

Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYVIKV 78
          LFV LY++++   D+L    G K  ++++S+ +WW+ + +  G  GY PSNYV  V
Sbjct: 2  LFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 57

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.5 bits (178), Expect = 9e-19
 Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSNYVIKVQPG 81
          + + V +Y+F++  A +L L+ G +  +++ +D +WW+ +   G  GY PSNYV   +  
Sbjct: 2  SEIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKKSN 61

Query: 82 E 82
           
Sbjct: 62 N 62

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.5 bits (178), Expect = 1e-18
 Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM-GRVGYFPSNYVIKVQP 80
          V LY++   +A++L L+ G +  +++ S+  WW+ +   G+ GY PSNYV + + 
Sbjct: 12 VALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAED 66

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.1 bits (73), Expect = 0.004
 Identities = 7/46 (15%), Positives = 15/46 (32%)

Query: 94  ADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV 139
               + L L +      + +        R+   ++G  P  Y+ E 
Sbjct: 19  PMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEA 64

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (177), Expect = 1e-18
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK--CMGRVGYFPSNYVIKVQPGE 82
          FV LY+++SR   +L  K G ++ +++ ++ +WW       G+ GY PSNYV      +
Sbjct: 5  FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQ 63

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.3 bits (175), Expect = 2e-18
 Identities = 20/52 (38%), Positives = 33/52 (63%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV 78
            LY+F++   DEL  + G  V V+D+S+ +WW G+   ++G FP+NYV  +
Sbjct: 5  RALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM 56

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.2 bits (175), Expect = 2e-18
 Identities = 22/49 (44%), Positives = 31/49 (63%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
            LY+F++   +EL  K G  +TV+D SD NWW+G+     G FPSN+V
Sbjct: 6  RALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFV 54

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.8 bits (171), Expect = 8e-18
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQ-NWWKGKCMGRVGYFPSNYVIKV 78
          NLFV LY+F +   + L +  G K+ V+  +    W + +     G+ PSNY+  V
Sbjct: 1  NLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPV 56

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.2 bits (172), Expect = 1e-17
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPGE 82
            L ++ ++  + L+      +TV++  + NWW G+  G  G+FP +YV  +   E
Sbjct: 14 QALCSWTAKKDNHLNFSKHDIITVLEQQE-NWWFGEVHGGRGWFPKSYVKIIPGSE 68

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (170), Expect = 2e-17
 Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 21 LPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWW-KGKCMGRVGYFPSNYVIK 77
          L  NL + L++++  H  +L  + G ++ +++ S + W  +    G+ G+ P N+V K
Sbjct: 4  LQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVAK 61

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.1 bits (171), Expect = 2e-17
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVI--DTSDQNWWKGKCMGRVGYFPSNYVIKVQPGER 83
          +  LY F++R+ DE+    G  + V      +  W  G   G  G+FP NYV K+   E 
Sbjct: 8  YRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSSEN 67

Query: 84 PLQVT 88
             V+
Sbjct: 68 EKAVS 72

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.4 bits (170), Expect = 2e-17
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRV-GYFPSNYVIKVQPGER 83
            L+++K++  DEL       +  ++  +  WW+G   G+   +FPSNYV ++   E 
Sbjct: 10 KALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVNPEG 67

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.0 bits (169), Expect = 2e-17
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
          +F  +Y++ +  ADE+  K G  +  +   D+ W  G     GR G  P+NYV
Sbjct: 5  IFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYV 57

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.6 bits (168), Expect = 2e-17
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVID-TSDQNWWKGKCMGRVGYFPSNYV 75
          +  Y+FK+   DEL  K G  + V++   DQNW+K +  G+ G+ P NY+
Sbjct: 4  IAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYI 53

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.4 bits (167), Expect = 3e-17
 Identities = 16/50 (32%), Positives = 23/50 (46%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          +V +  + +   DE+ L  G  V VI      WW  +     GYFPS Y+
Sbjct: 3  YVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYL 52

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.0 bits (166), Expect = 8e-17
 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 5/63 (7%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGR-----VGYFPSNYVIKVQPG 81
           V   + +  +++L L PG  + ++  +   WW+G+   R      G+FP+++V  + P 
Sbjct: 11 QVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPS 70

Query: 82 ERP 84
             
Sbjct: 71 SER 73

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.5 bits (165), Expect = 8e-17
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCM--GRVGYFPSNYV 75
             Y++ +   +EL      K+  I+  D +WW G+    G  G FPSNYV
Sbjct: 4  TAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 54

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.0 bits (164), Expect = 9e-17
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYV 75
           L++F     ++L  K G  + + D  ++ WW  +   G+ G  P  YV
Sbjct: 6  ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 54

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (163), Expect = 1e-16
 Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWW-KGKCMGRVGYFPSNYVIKVQPGE 82
          + V LY++++ H ++L  + G ++ V++ S + W  +     + GY PSNYV +V   E
Sbjct: 6  IVVALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVDSLE 64

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

 Score = 66.5 bits (162), Expect = 1e-16
 Identities = 15/52 (28%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK-CMGRVGYFPSNYVIK 77
          + LY++++    EL L+   +  ++D+S+ +WW+ +   G  GY PS+Y+++
Sbjct: 2  IALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVE 53

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.9 bits (161), Expect = 3e-16
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQN--WWKGKCMGRVGYFPSNYV 75
          V LY+F    + +L  + G  +T++  SD    WW G+  GR G FP+NYV
Sbjct: 5  VALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYV 55

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (159), Expect = 5e-16
 Identities = 10/50 (20%), Positives = 26/50 (52%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYV 75
          +  + +++     E+ L  G  V V++ S+  WW  +   + G+ P++++
Sbjct: 5  YRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFL 54

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.9 bits (158), Expect = 1e-15
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWW-KGKCMGRVGYFPSNYV 75
          P      LY  K+ H  EL    G     +  S +  W +G   G+ G  P NYV
Sbjct: 9  PFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYV 63

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.0 bits (156), Expect = 2e-15
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQN---WWKGKCMGRVGYFPSNYV 75
            L++++ ++ DEL +K G  +T+I   D++   WW  +   + GY P N +
Sbjct: 8  YALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLL 59

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 59

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.8 bits (155), Expect = 2e-15
 Identities = 12/54 (22%), Positives = 25/54 (46%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP 80
             Y+F +R++ EL +     + ++D   Q W      G  G+ P+N +  ++ 
Sbjct: 5  KSKYDFVARNSSELSVMKDDVLEILDDRRQWWKVRNASGDSGFVPNNILDIMRT 58

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (155), Expect = 3e-15
 Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 4/71 (5%)

Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSD----QNWWKGKCMGRVGYFPSNYVIK 77
          P  LF    NF +    ++ L  G  V VI   D    QN W        G+  S+++  
Sbjct: 16 PEKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKP 75

Query: 78 VQPGERPLQVT 88
            P       +
Sbjct: 76 YNPRRSHSDAS 86

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (154), Expect = 4e-15
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVID-TSDQNWWKGKCM-GRVGYFPSNYVIKVQ 79
          +  YNF      +L    G  +T++  T D NW+K K   GR G  P+NYV K +
Sbjct: 10 IAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKRE 64

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (151), Expect = 1e-14
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 27 VVLYNFKSRHADELDLKPGYKVTVIDTSDQ--NWWKGKCM-GRVGYFPSNYVIKVQPG 81
            LY F S   +EL+ + G  + VI+  +    WWK K   G+VG  P NYV+ +  G
Sbjct: 10 QTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDG 67

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.6 bits (144), Expect = 2e-13
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 17/75 (22%)

Query: 22 PTNLF--VVLYNFKSRHADELDLKPGYKVTVI-----DTSDQNWWKGK----------CM 64
          P  +F     +++ +   DEL LK G  V VI     +  D+ W  G             
Sbjct: 9  PGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELE 68

Query: 65 GRVGYFPSNYVIKVQ 79
             G FP N+  +VQ
Sbjct: 69 KCRGVFPENFTERVQ 83

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.8 bits (137), Expect = 1e-12
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 9/63 (14%)

Query: 22 PTNLFVV--LYNFKSRHAD-ELDLKPGYKVTVIDTSDQ-----NWWKGK-CMGRVGYFPS 72
          P+ L     LY+F   + + E+ LK G  + ++   D      +WWK +   G +GY P 
Sbjct: 2  PSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPY 61

Query: 73 NYV 75
          NY+
Sbjct: 62 NYI 64

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.0 bits (135), Expect = 3e-12
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQN-WWKGKCM--GRVGYFPSNYV 75
          +  +          L L PG  V +     ++ WW+G+      VG+FP N V
Sbjct: 13 YYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRV 65

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.5 bits (133), Expect = 5e-12
 Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 6/56 (10%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGK------CMGRVGYFPSNYV 75
            V+ ++ +   +E+ +  G  V V+  + QN                G+ P + +
Sbjct: 10 MTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSIL 65

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.8 bits (132), Expect = 8e-12
 Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 4/54 (7%)

Query: 26 FVVLYNFK-SRHADELDLKPGYKVTVIDTSDQNW-WKGKCM--GRVGYFPSNYV 75
             ++      +   L    G  +T++   +++    G+       G+FPS+Y 
Sbjct: 10 VKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYT 63

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.2 bits (130), Expect = 1e-11
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 28 VLYNFKSRHADELDLKPGYKVTVIDTSDQNW---WKGKCMGRVGYFPSNYV 75
          VLY +  +  DE+ + PG K++++     +          G  G  P+ Y+
Sbjct: 4  VLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYI 54

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (131), Expect = 1e-11
 Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 17/76 (22%)

Query: 26 FVVLYNFKSRHADELDLKPGYKVTVI---------------DTSDQNWWKGKCM--GRVG 68
          +  LY++K    +++DL  G  +TV                   +  W  G     G  G
Sbjct: 6  YRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERG 65

Query: 69 YFPSNYVIKVQPGERP 84
           FP  YV  +   +  
Sbjct: 66 DFPGTYVEYIGRKKIS 81

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (132), Expect = 1e-11
 Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 8/70 (11%)

Query: 25 LFVVLYNFKSRHA------DELDLKPGYKVTVIDTSDQNWW--KGKCMGRVGYFPSNYVI 76
          L V  Y++            EL L  G  + V    D++ +       G+ G  PSN+V 
Sbjct: 19 LCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVD 78

Query: 77 KVQPGERPLQ 86
           VQ  E  L 
Sbjct: 79 FVQDNESRLA 88

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (128), Expect = 6e-11
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 11/70 (15%)

Query: 22 PTNLFVVLYNFKSRHADELDLKPGYKVTVI---DTSDQNWWKGKCMG--------RVGYF 70
          P ++ V L ++ +     L +  G  V V        + +W G   G        R+GYF
Sbjct: 20 PISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYF 79

Query: 71 PSNYVIKVQP 80
          PS+ V + Q 
Sbjct: 80 PSSIVREDQT 89

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.8 bits (126), Expect = 9e-11
 Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 12/72 (16%)

Query: 25 LFV-VLYNFKSR-----HADELDLKPGYKVTVIDTSDQNWWKGK------CMGRVGYFPS 72
           ++  L+++         +  L  + G  + VID  D+ WW+ +          +G+ PS
Sbjct: 2  FYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPS 61

Query: 73 NYVIKVQPGERP 84
             ++ +   R 
Sbjct: 62 KRRVERREWSRL 73

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 46.1 bits (109), Expect = 3e-08
 Identities = 8/57 (14%), Positives = 21/57 (36%), Gaps = 10/57 (17%)

Query: 29 LYNFKSRHADE-------LDLKPGYKVTVIDTSDQNWWKGKCM---GRVGYFPSNYV 75
             + +   D+       +  +    + V +  + +WW G+ +     +G+ PS   
Sbjct: 27 NVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVK 83

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 1e-05
 Identities = 8/74 (10%), Positives = 25/74 (33%), Gaps = 3/74 (4%)

Query: 36  HADELDLKPGYKVTVIDTSDQNWWKGKC---MGRVGYFPSNYVIKVQPGERPLQVTHNLQ 92
            +  +       + + +  + +WW G+       +G+ PS   ++    ++  +      
Sbjct: 43  PSSAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLRLENIRIQQEQKRKRFHG 102

Query: 93  IADGESGLSLLRDQ 106
                +  S L + 
Sbjct: 103 GKSSGNSSSSLGEM 116

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	139
d1utia_	57	Grb2-related adaptor protein 2 (Mona/Gads) {Mouse	99.75
d1gcqa_	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.74
d1sema_	58	Growth factor receptor-bound protein 2 (GRB2), N-	99.74
d1u06a1	55	alpha-Spectrin, SH3 domain {Chicken (Gallus gallus	99.73
d1k4us_	62	p67phox {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1uj0a_	58	Signal transducing adaptor molecule Stam2 {Mouse (	99.72
d1udla_	98	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.71
d1wlpb1	53	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.7
d1ckaa_	57	C-Crk, N-terminal SH3 domain {Mouse (Mus musculus)	99.7
d1jo8a_	58	Actin binding protein ABP1 {Baker's yeast (Sacchar	99.69
d2rn8a1	53	Bruton's tyrosine kinase {Mus musculus [TaxId: 100	99.68
d1ng2a1	58	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.68
d1udla_	98	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.68
d1opka1	57	Abl tyrosine kinase, SH3 domain {Mouse (Mus muscul	99.67
d1efna_	57	Fyn proto-oncogene tyrosine kinase, SH3 domain {Hu	99.67
d1ycsb2	63	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1ng2a2	118	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.66
d1oota_	58	Hypothetical protein YFR024c {Baker's yeast (Sacch	99.66
d1arka_	60	SH3 domain from nebulin {Human (Homo sapiens) [Tax	99.66
d1gl5a_	67	tyrosine kinase tec {Mouse (Mus musculus) [TaxId:	99.66
d1ujya_	76	Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606	99.65
d1j3ta_	74	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.65
d1u5sa1	71	Nck-2 {Human (Homo sapiens) [TaxId: 9606]}	99.65
d2v1ra1	67	Peroxisomal membrane protein Pex13p {Baker's yeast	99.64
d1fmka1	64	c-src protein tyrosine kinase {Human (Homo sapiens	99.64
d1k9aa1	71	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.64
d1uhca_	79	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.63
d1i07a_	59	EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 1009	99.63
d1ue9a_	80	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.63
d1gria1	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.63
d1ugva_	72	Olygophrenin-1 like protein (KIAA0621) {Human (Hom	99.62
d1uhfa_	69	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.62
d2iima1	62	p56-lck tyrosine kinase, SH3 domain {Human (Homo s	99.62
d1ug1a_	92	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.62
d1awwa_	67	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.62
d1wfwa_	74	Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}	99.61
d1qcfa1	65	Hemapoetic cell kinase Hck {Human (Homo sapiens) [	99.61
d1spka_	72	BAI1-associated protein 2-like 1 (RIKEN cDNA 13000	99.6
d1uffa_	93	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.57
d2hspa_	71	Phospholipase C, SH3 domain {Human (Homo sapiens)	99.57
d1phta_	83	Phosphatidylinositol 3-kinase (p85-alpha subunit,	99.55
d1zuua1	56	BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.55
d1wiea_	96	RIM binding protein 2, RIMBP2 {Human (Homo sapiens	99.54
d1gcqc_	69	Vav N-terminal SH3 domain {Mouse (Mus musculus) [T	99.53
d1ckaa_	57	C-Crk, N-terminal SH3 domain {Mouse (Mus musculus)	99.51
d1bb9a_	83	Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 101	99.51
d2rn8a1	53	Bruton's tyrosine kinase {Mus musculus [TaxId: 100	99.5
d1gl5a_	67	tyrosine kinase tec {Mouse (Mus musculus) [TaxId:	99.49
d1u06a1	55	alpha-Spectrin, SH3 domain {Chicken (Gallus gallus	99.48
d2v1ra1	67	Peroxisomal membrane protein Pex13p {Baker's yeast	99.48
d1jo8a_	58	Actin binding protein ABP1 {Baker's yeast (Sacchar	99.47
d1utia_	57	Grb2-related adaptor protein 2 (Mona/Gads) {Mouse	99.47
d1gcqa_	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.47
d1i07a_	59	EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 1009	99.46
d1wlpb1	53	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.46
d1kjwa1	96	Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.46
d1i1ja_	106	Melanoma inhibitory activity protein {Human (Homo	99.45
d1uj0a_	58	Signal transducing adaptor molecule Stam2 {Mouse (	99.45
d1sema_	58	Growth factor receptor-bound protein 2 (GRB2), N-	99.45
d1awwa_	67	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.45
d1t0ha_	96	SH3-like domain of the L-type calcium channel {Rab	99.44
d1u5sa1	71	Nck-2 {Human (Homo sapiens) [TaxId: 9606]}	99.44
d1arka_	60	SH3 domain from nebulin {Human (Homo sapiens) [Tax	99.44
d1k4us_	62	p67phox {Human (Homo sapiens) [TaxId: 9606]}	99.43
d1efna_	57	Fyn proto-oncogene tyrosine kinase, SH3 domain {Hu	99.43
d1oota_	58	Hypothetical protein YFR024c {Baker's yeast (Sacch	99.41
d1k9aa1	71	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.39
d1ng2a1	58	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.39
d1opka1	57	Abl tyrosine kinase, SH3 domain {Mouse (Mus muscul	99.38
d1ue9a_	80	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.38
d1j3ta_	74	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.38
d1gria1	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.37
d1ujya_	76	Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606	99.37
d1ng2a2	118	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.36
d1wfwa_	74	Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}	99.36
d1fmka1	64	c-src protein tyrosine kinase {Human (Homo sapiens	99.36
d1spka_	72	BAI1-associated protein 2-like 1 (RIKEN cDNA 13000	99.36
d1ugva_	72	Olygophrenin-1 like protein (KIAA0621) {Human (Hom	99.35
d2hspa_	71	Phospholipase C, SH3 domain {Human (Homo sapiens)	99.34
d1ycsb2	63	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.32
d1uffa_	93	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.3
d1zuua1	56	BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.29
d1ug1a_	92	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.29
d1vyva1	145	SH3-like domain of the L-type calcium channel {Rat	99.29
d1uhca_	79	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.29
d2iima1	62	p56-lck tyrosine kinase, SH3 domain {Human (Homo s	99.28
d1phta_	83	Phosphatidylinositol 3-kinase (p85-alpha subunit,	99.28
d1wiea_	96	RIM binding protein 2, RIMBP2 {Human (Homo sapiens	99.26
d1uhfa_	69	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.26
d1qcfa1	65	Hemapoetic cell kinase Hck {Human (Homo sapiens) [	99.26
d1gcqc_	69	Vav N-terminal SH3 domain {Mouse (Mus musculus) [T	99.26
d1bb9a_	83	Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 101	99.18
d1kjwa1	96	Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.13
d1vyua1	136	SH3-like domain of the L-type calcium channel {Rat	99.11
d1i1ja_	106	Melanoma inhibitory activity protein {Human (Homo	99.05
d1t0ha_	96	SH3-like domain of the L-type calcium channel {Rab	98.94
d1vyva1	145	SH3-like domain of the L-type calcium channel {Rat	98.77
d1vyua1	136	SH3-like domain of the L-type calcium channel {Rat	98.38
d1ri9a_	77	Fyn-binding protein (T-cell adapter protein adap)	96.86
d1ri9a_	77	Fyn-binding protein (T-cell adapter protein adap)	96.8

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=1.6e-18  Score=96.84  Aligned_cols=55  Identities=36%  Similarity=0.817  Sum_probs=52.4

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEec
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV   78 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   78 (139)
                      ++++|+|+|.++.++||+|++||.|.|++..+++||.++.+|+.|+||++|++++
T Consensus         2 ~yarAlydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yve~i   56 (57)
T d1utia_           2 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM   56 (57)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECcCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCcEEEEEHHHEEEc
Confidence            4799999999999999999999999999999899999999999999999999875

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.7e-18  Score=95.57  Aligned_cols=55  Identities=42%  Similarity=0.912  Sum_probs=51.9

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEec
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV   78 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   78 (139)
                      .+++|+|+|.++.++||+|++||+|.|+++.+++||.++.+|+.|+||++|++++
T Consensus         2 tyv~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~v   56 (56)
T d1gcqa_           2 TYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPV   56 (56)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECcCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCeEEEEEHhHEEEC
Confidence            3689999999999999999999999999988899999999999999999999874

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

Probab=99.74  E-value=3e-18  Score=96.03  Aligned_cols=55  Identities=38%  Similarity=0.802  Sum_probs=52.5

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEec
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV   78 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   78 (139)
                      .+++|+|+|.++.+++|+|++||+|.|++..+++||.|+.+|+.|+||++||+++
T Consensus         3 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yvep~   57 (58)
T d1sema_           3 KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPY   57 (58)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECCCCCcCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCeEEEEEhhhEEEC
Confidence            5799999999999999999999999999999899999999999999999999875

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.73  E-value=5.8e-18  Score=93.89  Aligned_cols=54  Identities=30%  Similarity=0.782  Sum_probs=51.3

Q ss_pred             EEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEec
Q psy6450          25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV   78 (139)
Q Consensus        25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   78 (139)
                      .++|+|+|.++.+++|+|++||.+.|+++.+++||+++.+|++|+||++|++.+
T Consensus         2 ~~vAl~dy~~~~~~eLs~~~Gd~v~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~i   55 (55)
T d1u06a1           2 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL   55 (55)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECCCCCCCCcCCccCCCCCEEEEeEEcCCCEEEEEECCeEEEEeHHHEEEC
Confidence            489999999999999999999999999999999999999999999999999864

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.6e-18  Score=97.57  Aligned_cols=58  Identities=21%  Similarity=0.582  Sum_probs=53.4

Q ss_pred             CccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecC
Q psy6450          22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQ   79 (139)
Q Consensus        22 ~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   79 (139)
                      +...++|+|+|.++.+++|+|++||+|.|++..+++||.++.+|+.|+||++||++..
T Consensus         4 ~g~~v~Aly~y~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~g~~G~~P~~yVe~~~   61 (62)
T d1k4us_           4 KGSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDSA   61 (62)
T ss_dssp             CCEEEECCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEECSSCEEEECGGGCCCSC
T ss_pred             CCCEEEECCCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCcEEEEchHHeEECC
Confidence            3456999999999999999999999999999888999999999999999999998653

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=1.1e-17  Score=93.70  Aligned_cols=54  Identities=41%  Similarity=0.791  Sum_probs=51.0

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEe
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIK   77 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~   77 (139)
                      ..++|+|+|.++.++||+|++||+|.|++..+.+||.++++|+.|+||++||+.
T Consensus         3 rr~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~~   56 (58)
T d1uj0a_           3 RRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTT   56 (58)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEES
T ss_pred             CEEEECCCCCCCCcCCcCCCCCCEEEEeEEeCCCEEEEEECCeEEEEehHhEee
Confidence            469999999999999999999999999999889999999999999999999973

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.4e-18  Score=107.49  Aligned_cols=74  Identities=19%  Similarity=0.317  Sum_probs=62.4

Q ss_pred             CCeEEEEcCCcEEecCCCC----------ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeec
Q psy6450          64 MGRVGYFPSNYVIKVQPGE----------RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPL  133 (139)
Q Consensus        64 ~g~~G~~P~~~v~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~  133 (139)
                      .|+.|+||++|++.+.+..          ..++|.++|. ++.++||+|.+||+|.+....++|||.++. +|++|+||+
T Consensus         6 ~G~~G~~P~~yv~~~~~~~~~~~~~~~~~~~~~Alydy~-a~~~~ELsf~~Gd~i~Vl~~~~~gWw~g~~-~g~~G~~P~   83 (98)
T d1udla_           6 SGQKGWFPASHVKLLGPSSERATPAFHPVCQVIAMYDYA-ANNEDELSFSKGQLINVMNKDDPDWWQGEI-NGVTGLFPS   83 (98)
T ss_dssp             SSCCSSCCCCCCCCCSCCCCCCCSCCCCSEEEEESSCCC-CSSTTSCCCCTTCEEEECBCCSSSEEBCBS-SSCBCCEET
T ss_pred             CCceeeEcccceeECCCcccccCCCCCCccEEEEccCCC-CCCCCEeeEcCCCEEEEeEecCCCeEEEEE-CCeEEEEch
Confidence            6789999999998765432          2467889995 888889999999999888888899998875 679999999


Q ss_pred             CCEEeC
Q psy6450         134 KYLQEV  139 (139)
Q Consensus       134 ~~v~~~  139 (139)
                      +|||.|
T Consensus        84 nyVe~~   89 (98)
T d1udla_          84 NYVKMT   89 (98)
T ss_dssp             TSEEEC
T ss_pred             HHEEEC
Confidence            999975

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.3e-17  Score=90.67  Aligned_cols=51  Identities=31%  Similarity=0.589  Sum_probs=49.0

Q ss_pred             EEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEE
Q psy6450          26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVI   76 (139)
Q Consensus        26 ~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~   76 (139)
                      ++|+|+|+++.++||+|++||+|.|+++.+++||.++.+|+.|+||++|++
T Consensus         3 yval~~y~a~~~~eLs~~~Gd~v~vl~~~~~gWw~g~~~g~~G~~P~~yve   53 (53)
T d1wlpb1           3 YVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ   53 (53)
T ss_dssp             EEECSCBCCCSSSBCCBCTTCEEEEEECCTTSSEEEESSSCEEEECSTTEE
T ss_pred             EEEeeeECCCCCCEecCCCCCEEEEEeecCCceEEEEECCcEeEecHHhCC
Confidence            689999999999999999999999999999999999999999999999985

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=2.1e-17  Score=92.26  Aligned_cols=54  Identities=26%  Similarity=0.647  Sum_probs=50.7

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEe
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIK   77 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~   77 (139)
                      .+++|+|+|.++.+++|+|++||+|.|+...+++||.++. +|+.|+||++||++
T Consensus         2 ~~v~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~vP~~yve~   56 (57)
T d1ckaa_           2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK   56 (57)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEC
T ss_pred             CEEEECCCCCcCCcCCcCCCCCCEEEEEEEcCCCeEEEEECCCCEEEEcHHHeEE
Confidence            4689999999999999999999999999999899999998 78999999999985

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=3.2e-17  Score=91.84  Aligned_cols=54  Identities=31%  Similarity=0.605  Sum_probs=50.7

Q ss_pred             EEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEec
Q psy6450          25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIKV   78 (139)
Q Consensus        25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~   78 (139)
                      +++|+|+|.++.++||+|++||+|.|++..+++||.+++  +|++|+||++||+.+
T Consensus         2 ~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~~P~~yVe~i   57 (58)
T d1jo8a_           2 WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG   57 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EEEEccCCCCCCcCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEchHHEEEc
Confidence            489999999999999999999999999999999999998  679999999999865

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

Probab=99.68  E-value=2e-17  Score=91.03  Aligned_cols=52  Identities=29%  Similarity=0.735  Sum_probs=48.6

Q ss_pred             EEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEe
Q psy6450          26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIK   77 (139)
Q Consensus        26 ~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~   77 (139)
                      ++|+|+|.++.++||+|++||.+.|+++.+++||.++. +|+.|+||++|+++
T Consensus         1 V~Alydy~a~~~~eLs~~~Gd~~~vl~~~~~~Ww~~~~~~g~~G~vP~~yv~e   53 (53)
T d2rn8a1           1 VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVE   53 (53)
T ss_dssp             EEESSCCCCSSTTBCCCCTTCEEEECCCSCSSCEEEECTTSCEEEECGGGEEE
T ss_pred             CEEeeeECCCCCCeeeECCCCEEEEeEEcCCCeEEEEeCCCCEEEEeHHHEeC
Confidence            57999999999999999999999999988899999997 78999999999974

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=7.7e-18  Score=94.41  Aligned_cols=55  Identities=18%  Similarity=0.565  Sum_probs=51.9

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEec
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKV   78 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   78 (139)
                      ..++|+|+|.++.+++|+|++||+|.|+++.+++||.++.+|+.|+||++|++++
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~~~~~g~~G~~P~~yve~l   57 (58)
T d1ng2a1           3 QTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPL   57 (58)
T ss_dssp             EEEECSSCBCCSSTTCCCBCTTCEEEEEECCTTSCCEEEECCCCCCCCGGGCCCS
T ss_pred             eEEEECccCcCCCCCCcCCCCCCEEEEEEecCCCeEEEEECCCCcEEcHhHEEEC
Confidence            4589999999999999999999999999999999999999999999999999865

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3.3e-17  Score=101.17  Aligned_cols=60  Identities=32%  Similarity=0.763  Sum_probs=55.0

Q ss_pred             CccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        22 ~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      +...++|||+|.++.++||+|++||+|.|+++.+++||+++.+|+.|+||++||+.+...
T Consensus        33 ~~~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~nyVe~~~~~   92 (98)
T d1udla_          33 PVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDS   92 (98)
T ss_dssp             CSEEEEESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBSSSCBCCEETTSEEECCCC
T ss_pred             CccEEEEccCCCCCCCCEeeEcCCCEEEEeEecCCCeEEEEECCeEEEEchHHEEECCCC
Confidence            345699999999999999999999999999998899999999999999999999887654

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=7.6e-17  Score=89.90  Aligned_cols=54  Identities=31%  Similarity=0.666  Sum_probs=48.7

Q ss_pred             EEEEEeeecCCCCCCcccCCCCEEEEEECCCC-CeeEEEECCeEEEEcCCcEEec
Q psy6450          25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQ-NWWKGKCMGRVGYFPSNYVIKV   78 (139)
Q Consensus        25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~-~w~~~~~~g~~G~~P~~~v~~~   78 (139)
                      .++|+|+|.++.++||+|++||+|.|+++.++ +||.++.+|++|+||++|++++
T Consensus         2 ~~vAlydy~a~~~~eLs~~~Gd~i~vl~~~~~~~W~~~~~~g~~G~~P~~yv~~v   56 (57)
T d1opka1           2 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPV   56 (57)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEECSSCEEEEEGGGEEES
T ss_pred             EEEECccCCCCCcCCcCCCCCCEEEEeEecCCCCEEEEEECCCEeEEchhheEEC
Confidence            58999999999999999999999999987655 5778888999999999999875

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.2e-16  Score=89.23  Aligned_cols=54  Identities=39%  Similarity=0.935  Sum_probs=50.2

Q ss_pred             EEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEec
Q psy6450          25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIKV   78 (139)
Q Consensus        25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~   78 (139)
                      .++|+|+|.++.++||+|++||.|.|+++.+++||.++.  +|+.|+||++|++++
T Consensus         2 l~vAl~dy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~pv   57 (57)
T d1efna_           2 LFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV   57 (57)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSSCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EEEECCCCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEECCCCCEEEEeHHHeEEC
Confidence            478999999999999999999999999998889999997  789999999999864

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=7.5e-17  Score=91.69  Aligned_cols=56  Identities=27%  Similarity=0.597  Sum_probs=50.1

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCC---CCeeEEEECCeEEEEcCCcEEec
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSD---QNWWKGKCMGRVGYFPSNYVIKV   78 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~---~~w~~~~~~g~~G~~P~~~v~~~   78 (139)
                      ...++|+|+|.++.++||+|++||+|.|++..+   .+||.++++|++|+||++||+.+
T Consensus         4 ~g~v~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~gW~~g~~~g~~G~~P~~yv~~~   62 (63)
T d1ycsb2           4 KGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLY   62 (63)
T ss_dssp             GGEEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEETTEEEEEEGGGEECC
T ss_pred             CCEEEEeeCCCCCCCCCcCCCCCCEEEEEEecCCCCCCEEEEEECCeEEEEchHHhEeC
Confidence            346899999999999999999999999987653   37999999999999999999764

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.1e-16  Score=100.57  Aligned_cols=58  Identities=29%  Similarity=0.509  Sum_probs=54.0

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   80 (139)
                      ...++|+|+|.++.++||+|++||+|.|+++.+.+||.|+.+|++||||++||+.+..
T Consensus        14 g~~~~alydy~a~~~dELs~~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~   71 (118)
T d1ng2a2          14 GEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQ   71 (118)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEETTS
T ss_pred             CcEEEECcCCCCCCCCEecCCCCCEEEEeEecCCCeEEEEECCeEEEEehhhEEECCC
Confidence            3568999999999999999999999999999899999999999999999999998753

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=1.5e-16  Score=88.97  Aligned_cols=54  Identities=39%  Similarity=0.834  Sum_probs=49.3

Q ss_pred             EEEEEeeecCCCCCCcccCCCCEEEEEECCC--CCeeEEEECCeEEEEcCCcEEec
Q psy6450          25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSD--QNWWKGKCMGRVGYFPSNYVIKV   78 (139)
Q Consensus        25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~--~~w~~~~~~g~~G~~P~~~v~~~   78 (139)
                      +|+|+|+|.++.++||+|++||.|.|+++.+  .+||.++.+|++|+||.+|++.+
T Consensus         3 ~~~Alydy~a~~~~ELs~~~Gd~v~vl~~~~~~~~W~~~~~~g~~G~vP~~yve~i   58 (58)
T d1oota_           3 KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV   58 (58)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEccCCCCCCCCCccCCCCCEEEEEEeecCCCCEEEEEECCcEEEEcHHHEEEC
Confidence            4899999999999999999999999998763  47999999999999999999864

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.6e-17  Score=92.86  Aligned_cols=56  Identities=30%  Similarity=0.693  Sum_probs=51.4

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEec
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIKV   78 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~   78 (139)
                      ...++|+|+|.++.++||+|++||+|.|++..+++||.+++  +|+.|+||++||+.+
T Consensus         3 G~~~rAl~df~~~~~~eLs~~~Gd~i~v~~~~~~~W~~~~~~~~g~~G~vP~nyve~i   60 (60)
T d1arka_           3 GKIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI   60 (60)
T ss_dssp             CCCEECCSCCCCSSSSBCCCCTTCEECCSEECSSSEEEEECTTTCCEEEEETTTCEEC
T ss_pred             CcEEEECccCCCCCCCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEcHHHEEEC
Confidence            44589999999999999999999999999988899999998  689999999999864

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=1.4e-16  Score=91.66  Aligned_cols=57  Identities=32%  Similarity=0.791  Sum_probs=52.3

Q ss_pred             EEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEecCCC
Q psy6450          25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~~   81 (139)
                      .++|+|+|.++.+++|+|++||+|.|+++.+.+||.++. +|+.|+||++||+.+...
T Consensus         4 ~v~Alydf~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yV~~~~~~   61 (67)
T d1gl5a_           4 IVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKKSN   61 (67)
T ss_dssp             CEEECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEECSSSCEEEEETTSEESSTTT
T ss_pred             EEEECCCCCCCCcCCcCCCCCCEEEEEEecCCCcEEEEECCCCEEEEEhHHeEEecCC
Confidence            489999999999999999999999999998889999987 789999999999876543

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=5.5e-17  Score=95.65  Aligned_cols=56  Identities=36%  Similarity=0.765  Sum_probs=52.9

Q ss_pred             EEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCC
Q psy6450          25 LFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   80 (139)
                      .++|+|+|.++.++||+|++||+|.|+++.+++||+++.+|++|+||++||+.+..
T Consensus        12 ~~rAlydy~a~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~i~~   67 (76)
T d1ujya_          12 IVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKS   67 (76)
T ss_dssp             EEECCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEEETTEEEEECTTTSEECCH
T ss_pred             EEEECccCCCCCCCCccCCCCCEEEEeEEcCCCEEEEEECCcEEEEchHHEEECCC
Confidence            58999999999999999999999999998888999999999999999999998764

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.9e-16  Score=92.83  Aligned_cols=58  Identities=24%  Similarity=0.570  Sum_probs=52.6

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      ...++|+|+|.++.++||+|++||+|.|+++ +++||.++.+|++||||.+||+.+...
T Consensus        10 ~~~~~alydy~a~~~~ELs~~~Gd~i~vl~~-~~~ww~g~~~g~~G~fP~~yve~i~~~   67 (74)
T d1j3ta_          10 NLKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKIIPGS   67 (74)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEE-CSSEEEEESTTCCCEEEGGGEEECCCS
T ss_pred             CeEEEEccCCCCCCCCEecCCCCCEEEEEEc-cCCeEEEEECCcEEEEchhhEEECCCC
Confidence            3469999999999999999999999999987 468999999999999999999987653

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=4.4e-16  Score=90.55  Aligned_cols=59  Identities=36%  Similarity=0.748  Sum_probs=52.4

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCC--CCeeEEEE-CCeEEEEcCCcEEecCCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSD--QNWWKGKC-MGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~--~~w~~~~~-~g~~G~~P~~~v~~~~~~   81 (139)
                      ...++|+|+|.++.++||+|++||+|.|++..+  ++||.++. +|+.|+||++|++.+...
T Consensus         6 l~~~~Alydf~~~~~~eLs~~~Gd~i~vl~~~~~~~~Ww~~~~~~G~~G~vP~~yv~~~~~~   67 (71)
T d1u5sa1           6 LHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDG   67 (71)
T ss_dssp             SSEEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEETTTEEEEEETTSEEECCCS
T ss_pred             cEEEEECccCCCCCCCEeeECCCCEEEEEEcccCCCCeEEEEECCCCEEEEChHHEEECCCC
Confidence            356999999999999999999999999998643  48999997 789999999999988754

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=1.1e-16  Score=92.06  Aligned_cols=56  Identities=30%  Similarity=0.735  Sum_probs=48.7

Q ss_pred             ccEEEEEeeecCCCCC-CcccCCCCEEEEEECCC-----CCeeEEEE-CCeEEEEcCCcEEec
Q psy6450          23 TNLFVVLYNFKSRHAD-ELDLKPGYKVTVIDTSD-----QNWWKGKC-MGRVGYFPSNYVIKV   78 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~-eLs~~~gd~i~v~~~~~-----~~w~~~~~-~g~~G~~P~~~v~~~   78 (139)
                      ..+++|+|+|.++.++ ||+|++||+|.|+++.+     .+||.++. +|++|+||++||+.+
T Consensus         5 ~~~~~Alydy~~~~~~~ELs~~~Gd~i~vl~~~d~~~~~~~Ww~g~~~~G~~G~~P~nyve~i   67 (67)
T d2v1ra1           5 LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   67 (67)
T ss_dssp             CEEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC
T ss_pred             CEEEEECccCCCCCCCCEeCCCCCCEEEEEEeecCCCcCCCeEEEEeCCCCEEEEEHHHEEEC
Confidence            3579999999998765 99999999999998643     48999998 789999999999864

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2e-16  Score=90.24  Aligned_cols=57  Identities=33%  Similarity=0.849  Sum_probs=51.9

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEecCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~   80 (139)
                      ..++|+|+|.++.++||+|++||.|.|+++.+++||.++.  +|+.|+||++|++++..
T Consensus         3 ~~~vAlydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~~~~s   61 (64)
T d1fmka1           3 TTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDS   61 (64)
T ss_dssp             EEEEESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEETTS
T ss_pred             eEEEECccCCCcCcCCcCCCCCCEEEEEEEcCCCcEEEEECCCCCEEEEehHHeEECcc
Confidence            3579999999999999999999999999988889999998  57899999999998654

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.4e-16  Score=90.57  Aligned_cols=59  Identities=32%  Similarity=0.610  Sum_probs=51.5

Q ss_pred             CccEEEEEeeecCCCCCCcccCCCCEEEEEECC-CCCeeEEEE-CCeEEEEcCCcEEecCC
Q psy6450          22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTS-DQNWWKGKC-MGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        22 ~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~-~~~w~~~~~-~g~~G~~P~~~v~~~~~   80 (139)
                      +...|+|+|+|.++.++||+|++||+|.|+.+. +.+||.+++ .|+.|+||.+||+.+..
T Consensus         5 ~g~~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~W~~~~~~~g~~G~~P~~yve~~~~   65 (71)
T d1k9aa1           5 SGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREG   65 (71)
T ss_dssp             TTCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECTTCCEEEEEGGGEEECCC
T ss_pred             CCCEEEEccCCCCCCCCCccCCCCCEEEEeEeccCCCEEEEEeCCCCEEEEchHHeEEccc
Confidence            455699999999999999999999999998865 557888888 68999999999997654

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=6.1e-16  Score=91.69  Aligned_cols=59  Identities=31%  Similarity=0.812  Sum_probs=52.6

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECC----CCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTS----DQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~----~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      ...++|+|+|.++.++||+|++||+|.|+++.    ..+||.++.+|+.||||++||+.+...
T Consensus        13 ~~~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~~~W~~g~~~g~~G~vP~~yv~~~~~~   75 (79)
T d1uhca_          13 NQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESG   75 (79)
T ss_dssp             SCCEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESSSCEEEEEGGGEEECCSS
T ss_pred             CEEEEECccCCCCCCCCccCCCCCEEEEEEeecCCCCCCEEEEEECCCEEEEehhhEEECCCC
Confidence            34599999999999999999999999999864    368999999999999999999987653

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=2e-16  Score=88.82  Aligned_cols=56  Identities=23%  Similarity=0.542  Sum_probs=50.6

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEecCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~   80 (139)
                      .+++|+|+|.++.++||+|++||+|.|++.. ++||.++. +|+.|+||++||+.+..
T Consensus         2 ~~a~alydf~a~~~~ELs~~~Gd~i~v~~~~-~~ww~~~~~~g~~G~~P~nyve~i~~   58 (59)
T d1i07a_           2 KYAKSKYDFVARNSSELSVMKDDVLEILDDR-RQWWKVRNASGDSGFVPNNILDIMRT   58 (59)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEECGGG-CCEEEEECTTSCEEEEEGGGEEEECC
T ss_pred             eEEEEccCCCCCCCCeeeEcCCCEEEEEEEc-CCcEEEEEcCCCEEEECHHHeEECCC
Confidence            4699999999999999999999999999864 58999987 88999999999998753

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=7.7e-16  Score=91.55  Aligned_cols=59  Identities=22%  Similarity=0.577  Sum_probs=52.9

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE-----CCeEEEEcCCcEEecCCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-----MGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~-----~g~~G~~P~~~v~~~~~~   81 (139)
                      ...++|+|+|.++.++||+|++||+|.|+++.+.+||.++.     .+++||||.+||+.+...
T Consensus         7 g~~~~al~~y~~~~~~eLs~~~Gd~i~Vl~~~~~~Ww~g~~~~~~~~~~~G~~P~~yv~~~~~~   70 (80)
T d1ue9a_           7 GEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPS   70 (80)
T ss_dssp             CEEEEECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEECCSC
T ss_pred             CCEEEECcCCCCCCCCEeeEcCCCEEEEEEEeCCCeEEEEEccCCCCCCEeEEEheeEEECCCC
Confidence            45699999999999999999999999999998899999986     346899999999987654

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.7e-16  Score=88.09  Aligned_cols=52  Identities=37%  Similarity=0.735  Sum_probs=43.8

Q ss_pred             EEEEEeeecCCCCCCcccCCCCEEEEEECC-CCCeeEEEECCeEEEEcCCcEE
Q psy6450          25 LFVVLYNFKSRHADELDLKPGYKVTVIDTS-DQNWWKGKCMGRVGYFPSNYVI   76 (139)
Q Consensus        25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~~-~~~w~~~~~~g~~G~~P~~~v~   76 (139)
                      .|+|+|+|.++.++||+|++||.|.|++.. +++||.++.+|+.|+||++||+
T Consensus         2 ~a~Alydy~a~~~~ELs~~~Gd~v~v~~~~~~~~W~~~~~~g~~G~vP~nyve   54 (56)
T d1gria1           2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIE   54 (56)
T ss_dssp             EEEECSCBCCCSSSCCCBCTTCEEEC------CCEEEEESSSCEEEEEGGGEE
T ss_pred             EEEEeeCCCCCCCCCcCCCCCCEEEEEeccCCCCeEEEEECCcEEEEehhhEE
Confidence            489999999999999999999999988754 5678888889999999999996

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.1e-16  Score=92.12  Aligned_cols=59  Identities=29%  Similarity=0.517  Sum_probs=52.0

Q ss_pred             CccEEEEEeeecCCCCCCcccCCCCEEEEEECCC-CCeeEEEECCeEEEEcCCcEEecCC
Q psy6450          22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSD-QNWWKGKCMGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        22 ~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~-~~w~~~~~~g~~G~~P~~~v~~~~~   80 (139)
                      +...++|||+|.++.++||+|++||+|.|++..+ .+||.++.+|+.|+||.+||+.+..
T Consensus         9 p~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~g~~G~~P~~yve~i~~   68 (72)
T d1ugva_           9 PFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLSG   68 (72)
T ss_dssp             SCCCEEESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEESSSCEEEEEGGGEEECCS
T ss_pred             CCEEEEEcccCCCCCCCEecCCCCCEEEEeeccCCCCEEEEEeCCCEEEEchHHEEECCC
Confidence            4456999999999999999999999999888654 4688998899999999999998764

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.7e-16  Score=91.72  Aligned_cols=57  Identities=32%  Similarity=0.673  Sum_probs=51.9

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEECCeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKCMGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   80 (139)
                      ...++|+|+|.++.++||+|++||+|.|+++ +++||+++++|+.|+||.+||+.+..
T Consensus         8 ~~~~vAl~~y~~~~~~eLs~~~Gd~v~vl~~-~~~Ww~~~~~g~~G~vP~~yv~~~~~   64 (69)
T d1uhfa_           8 GEEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKPKDS   64 (69)
T ss_dssp             SEEEECSSCBCCSSSSBCCBCTTCEEEECEE-ETTEEEECSTTCCEEECGGGCEECCC
T ss_pred             CcEEEECccCCCCCcCCcCCCCCCEEEEEEe-cCCEEEEEECCcEEEEchhhEEECCC
Confidence            4569999999999999999999999999987 46899999999999999999998754

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=8.4e-16  Score=87.07  Aligned_cols=56  Identities=30%  Similarity=0.771  Sum_probs=49.3

Q ss_pred             CCccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEe
Q psy6450          21 LPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIK   77 (139)
Q Consensus        21 ~~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~   77 (139)
                      .+...++|+|+|.++.++||+|++||+|.|+++.+ +||.++.  +|+.|+||++||++
T Consensus         4 ~~~~~~~al~dy~a~~~~eLs~~~Gd~i~v~~~~~-~ww~~~~~~~g~~G~~P~~yV~~   61 (62)
T d2iima1           4 LQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSG-EWWKAQSLTTGQEGFIPFNFVAK   61 (62)
T ss_dssp             TTTCEEEESSCBCCCSTTBCCBCTTCEEEEEECCS-SEEEEEETTTCCEEEEEGGGEEE
T ss_pred             CCCcEEEECCCCCcCCcCCcCCCCCCEEEEeEEcC-CCEEEEeccCCeEeEEcHHHEEe
Confidence            44567999999999999999999999999999864 6888776  68999999999975

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=6e-16  Score=94.25  Aligned_cols=61  Identities=28%  Similarity=0.372  Sum_probs=54.2

Q ss_pred             CCccEEEEEeeecCCCCCCcccCCCCEEEEEECCC----CCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          21 LPTNLFVVLYNFKSRHADELDLKPGYKVTVIDTSD----QNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        21 ~~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~----~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      .+...++|+|+|.++.++||+|++||+|.|+++.+    .+||+++.+|++||||++||+.+...
T Consensus        15 ~~~~~~~a~~~f~a~~~~eLs~~~Gd~v~vl~~~d~~~~~~Ww~~~~~g~~G~~P~~yv~~~~~~   79 (92)
T d1ug1a_          15 PPEKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPR   79 (92)
T ss_dssp             CGGGEEEESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEECSSSEEEEEGGGEEECCCC
T ss_pred             CCCeEEEEcCCcCCCCCCeEEEecccEEEEEEcccccccCCceEEEecccEEEEEhhhceecCCc
Confidence            34567999999999999999999999999998753    68999999999999999999987654

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=4.7e-17  Score=93.69  Aligned_cols=58  Identities=31%  Similarity=0.724  Sum_probs=52.6

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~   80 (139)
                      ...++|+|+|.++.++||+|++||+|.|++..+.+||.++. +|+.|+||++||+.+.+
T Consensus         8 ~~~v~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~vP~~yv~~~~~   66 (67)
T d1awwa_           8 LKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAED   66 (67)
T ss_dssp             CCEEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCTTSCBCCEETTTBCCSCC
T ss_pred             CEEEEECcCCCCCCcCCcCCCCCCEEEEEEEcCCCeEEEEECCCCEEEEcHHHeEECcC
Confidence            34699999999999999999999999999988889999987 78999999999987654

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=6.7e-16  Score=90.49  Aligned_cols=58  Identities=16%  Similarity=0.218  Sum_probs=52.6

Q ss_pred             ccEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE------CCeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC------MGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~------~g~~G~~P~~~v~~~~~   80 (139)
                      ...++|+|+|.++.++||+|++||+|.|++..+.+||.++.      .|++||||.+||+++..
T Consensus         7 g~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~v~~~~~~~~~g~~G~vP~~yve~~~~   70 (74)
T d1wfwa_           7 GSTMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILAPFSG   70 (74)
T ss_dssp             SCEEECCSCBCCCSSSCCCBCTTCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEGGGCCBCCS
T ss_pred             CCEEEEeEEECCCCCCCccCccCCEEEEEEEcCCCCEEEEeCccCCcCCeeeEEchHHeEECCC
Confidence            45699999999999999999999999999998899999987      26899999999988764

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.4e-15  Score=86.93  Aligned_cols=56  Identities=32%  Similarity=0.819  Sum_probs=49.9

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE--CCeEEEEcCCcEEecCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC--MGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~   80 (139)
                      ..++|+|+|.++.++||+|++||.|.|++. +++||.++.  +|+.|+||++|++.+..
T Consensus         5 ~~vvAlydy~~~~~~eLs~~~Gd~i~v~~~-~~~ww~~~~~~~g~~G~vP~~yv~~~~~   62 (65)
T d1qcfa1           5 IIVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVDS   62 (65)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEC-CTTEEEEEETTTCCEEEEEGGGEEETTC
T ss_pred             EEEEECCcCCCCCcCccCCCCCCEEEEEEE-CCCCEEEEEccCCCEEEEchHHeEECcc
Confidence            458999999999999999999999999986 457999887  68999999999998754

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=8.9e-16  Score=89.43  Aligned_cols=58  Identities=17%  Similarity=0.359  Sum_probs=49.5

Q ss_pred             ccEEEEEeeecCC-CCCCcccCCCCEEEEEEC-CCCCeeEEEE--CCeEEEEcCCcEEecCC
Q psy6450          23 TNLFVVLYNFKSR-HADELDLKPGYKVTVIDT-SDQNWWKGKC--MGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        23 ~~~~~al~~~~~~-~~~eLs~~~gd~i~v~~~-~~~~w~~~~~--~g~~G~~P~~~v~~~~~   80 (139)
                      ..+++|+|+|.++ .+++|+|++||+|.|+.. ..++||.+++  .++.|+||.+||+.+..
T Consensus         7 ~~~~~Alydy~~~~~~deLsf~~Gd~i~vl~~~~~~gW~~g~~~~~g~~G~fP~nyVe~i~~   68 (72)
T d1spka_           7 GQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLSG   68 (72)
T ss_dssp             SCEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEECSS
T ss_pred             CCEEEEeeccCCCCCCCEeeEcCCCEEEEEEeecCCCeEEEEECCCCCEEEEchhhEEECCC
Confidence            4569999999986 578899999999999865 4567999987  47899999999998864

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.6e-15  Score=91.62  Aligned_cols=57  Identities=32%  Similarity=0.684  Sum_probs=51.3

Q ss_pred             EEEEEeeecCCCCCCcccCCCCEEEEEECC--CCCeeEEEECCeEEEEcCCcEEecCCC
Q psy6450          25 LFVVLYNFKSRHADELDLKPGYKVTVIDTS--DQNWWKGKCMGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        25 ~~~al~~~~~~~~~eLs~~~gd~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~~~~   81 (139)
                      .++|+|+|.++.++||+|++||+|.|+++.  +.+||.++.+|+.|+||.+||+.+...
T Consensus         7 ~~rAlydy~~~~~~ELs~~~Gd~v~Vl~~~~~~~~w~~~~~~g~~G~~P~~Yve~~~~~   65 (93)
T d1uffa_           7 GYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSS   65 (93)
T ss_dssp             CEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEETTEEEEEETTTEEECCSS
T ss_pred             EEEECccCCCCCCCCccCcCCCEEEEEEeccCCCCEEEEEeCCcEEEEchHHEEECCCC
Confidence            489999999999999999999999999775  356899999999999999999987653

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.2e-16  Score=92.93  Aligned_cols=58  Identities=24%  Similarity=0.558  Sum_probs=51.4

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcEEecCCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYVIKVQPG   81 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~~   81 (139)
                      ..++|+|+|.++.++||+|++||+|.|+++.+++||.+++ ++..|+||++|++.+...
T Consensus         7 ~~v~Aly~f~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~~G~fP~~yv~~~~~~   65 (71)
T d2hspa_           7 CAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVNP   65 (71)
T ss_dssp             SCEECCSCCCCSSSSSCCCCTTCEEBSCCCBTTTEECCBCSSCCSCCEETTTCCSCSCC
T ss_pred             EEEEEcccCCcCCcCCccCCCCCEEEEEEecCCCEEEEEECCeEEEEEchHHeEEcCCc
Confidence            3489999999999999999999999999988899999988 455679999999987654

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.4e-15  Score=90.77  Aligned_cols=57  Identities=30%  Similarity=0.565  Sum_probs=50.4

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECC---------------CCCeeEEEE--CCeEEEEcCCcEEecCC
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTS---------------DQNWWKGKC--MGRVGYFPSNYVIKVQP   80 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~---------------~~~w~~~~~--~g~~G~~P~~~v~~~~~   80 (139)
                      ..++|+|+|.++.++||+|++||+|.|+...               +++||.|++  +|+.||||++||+.+..
T Consensus         4 ~~~raly~y~~~~~~eLs~~~Gd~i~V~~~~~~~~~~~~~~~~~~~~~GW~~G~~~~~g~~G~FP~nYVe~i~~   77 (83)
T d1phta_           4 YQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIGR   77 (83)
T ss_dssp             EEEEECSCBCCSSTTBCCBCTTCEEEEEHHHHHTTTCCTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEEE
T ss_pred             CEEEEcCccCCCCCCcccccCCCEEEEEeccccccccccccccccCCCCeEEEEECCCCcEeeEehhhEEEcCC
Confidence            4689999999999999999999999999642               357999998  78999999999998754

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=3.9e-15  Score=82.56  Aligned_cols=51  Identities=27%  Similarity=0.615  Sum_probs=44.6

Q ss_pred             EEEEeeecCCCCCCcccCCCCEEEEEECCCCC-eeEEEE--CCeEEEEcCCcEE
Q psy6450          26 FVVLYNFKSRHADELDLKPGYKVTVIDTSDQN-WWKGKC--MGRVGYFPSNYVI   76 (139)
Q Consensus        26 ~~al~~~~~~~~~eLs~~~gd~i~v~~~~~~~-w~~~~~--~g~~G~~P~~~v~   76 (139)
                      ++|||+|.++.++||+|++||+|.|++..+.+ ||.+..  +|+.|+||++||+
T Consensus         2 aralydf~a~~~~ELs~~~Gd~i~v~~~~~~~~w~~~~~~~~g~~G~~P~nyve   55 (56)
T d1zuua1           2 NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR   55 (56)
T ss_dssp             CEECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEE
T ss_pred             CEEeeeeCCCCCCEeeECCCCEEEEEEEecCCCcEEEeCCCCceEEEEehhhEE
Confidence            68999999999999999999999999876554 566555  7899999999996

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.9e-15  Score=90.68  Aligned_cols=61  Identities=31%  Similarity=0.483  Sum_probs=50.4

Q ss_pred             CccEEEEEeeecCCC------CCCcccCCCCEEEEEECCCC-CeeEEEE-CCeEEEEcCCcEEecCCCC
Q psy6450          22 PTNLFVVLYNFKSRH------ADELDLKPGYKVTVIDTSDQ-NWWKGKC-MGRVGYFPSNYVIKVQPGE   82 (139)
Q Consensus        22 ~~~~~~al~~~~~~~------~~eLs~~~gd~i~v~~~~~~-~w~~~~~-~g~~G~~P~~~v~~~~~~~   82 (139)
                      ....|+|+|||.++.      ++||+|++||+|.|+.+.+. +||.+.. +|++||||++||+.+....
T Consensus        16 ~~~~~~Alydy~~~~~~~~~~e~ELsf~~Gd~i~v~~~~~~~gW~~~~~~~G~~G~~P~nyve~~~~~~   84 (96)
T d1wiea_          16 KVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQDNE   84 (96)
T ss_dssp             CEEEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEETTCCBCBCCTTSEECCCSCC
T ss_pred             CceEEEEeeeecCcccCCCCCCcEeeEcCCCEEEEEEeeCCCceEEEEeCCCCEEEEehHHeEECCCcc
Confidence            456799999998754      58899999999999987654 5888876 8899999999999886543

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=2.1e-14  Score=82.70  Aligned_cols=54  Identities=30%  Similarity=0.621  Sum_probs=46.4

Q ss_pred             EEEEEeeecC------CCCCCcccCCCCEEEEEEC-CCCCeeEEEE--CCeEEEEcCCcEEec
Q psy6450          25 LFVVLYNFKS------RHADELDLKPGYKVTVIDT-SDQNWWKGKC--MGRVGYFPSNYVIKV   78 (139)
Q Consensus        25 ~~~al~~~~~------~~~~eLs~~~gd~i~v~~~-~~~~w~~~~~--~g~~G~~P~~~v~~~   78 (139)
                      .++|+++|.+      +..++|+|++||+|.|++. .+++||.|++  +|+.||||++||+++
T Consensus         6 k~~a~~~y~~~~~~~~~~~~eLsf~~GD~i~Vl~~~~~~gWw~G~~~~~g~~G~fP~nyVePy   68 (69)
T d1gcqc_           6 KMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   68 (69)
T ss_dssp             EEEECSCBSSSSCCGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             cEEEeeeEeccCCCCCCCCCEeeEcCCCEEEEEEEecCCCEEEEEECCCCCEEEEeHHHEEEc
Confidence            3678888765      6789999999999999975 4578999998  689999999999875

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=1.1e-14  Score=80.86  Aligned_cols=54  Identities=13%  Similarity=0.313  Sum_probs=48.4

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQE  138 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~  138 (139)
                      .++|.++|. ++.+++|+|.+||+|.+....++|||.++..+|+.|+||++|||+
T Consensus         3 ~v~Alydy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~vP~~yve~   56 (57)
T d1ckaa_           3 YVRALFDFN-GNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK   56 (57)
T ss_dssp             EEEESSCBC-CSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEC
T ss_pred             EEEECCCCC-cCCcCCcCCCCCCEEEEEEEcCCCeEEEEECCCCEEEEcHHHeEE
Confidence            357889995 788889999999999888888899999999989999999999985

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=1.3e-14  Score=86.60  Aligned_cols=55  Identities=31%  Similarity=0.455  Sum_probs=48.0

Q ss_pred             cEEEEEeeecCCCCCCcccCCCCEEEEEECC-----CCCeeEEEE----------CCeEEEEcCCcEEec
Q psy6450          24 NLFVVLYNFKSRHADELDLKPGYKVTVIDTS-----DQNWWKGKC----------MGRVGYFPSNYVIKV   78 (139)
Q Consensus        24 ~~~~al~~~~~~~~~eLs~~~gd~i~v~~~~-----~~~w~~~~~----------~g~~G~~P~~~v~~~   78 (139)
                      ..++|+|+|.++.++||+|++||+|.|+++.     +++||.|..          +|+.|+||++||+.+
T Consensus        13 ~~~~Alydy~a~~~~ELs~~~Gd~i~Vl~~~~~~~~~dgWw~G~~~~~~~~~~~~~g~~G~fP~nyVe~i   82 (83)
T d1bb9a_          13 FKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV   82 (83)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEE
T ss_pred             EEEEEceeECCCCCCEecCcCCCEEEEEEccCCCcccCCEeEEEecCCccccccCCCCEEEEchhHeEEc
Confidence            4599999999999999999999999999764     357999986          256899999999876

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

Probab=99.50  E-value=1.1e-14  Score=79.84  Aligned_cols=52  Identities=17%  Similarity=0.210  Sum_probs=46.7

Q ss_pred             eeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450          86 QVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQE  138 (139)
Q Consensus        86 ~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~  138 (139)
                      .|.++|. ++.+++|+|.+||++.+..+.++|||.++..+|+.|+||++||++
T Consensus         2 ~Alydy~-a~~~~eLs~~~Gd~~~vl~~~~~~Ww~~~~~~g~~G~vP~~yv~e   53 (53)
T d2rn8a1           2 IALYDYQ-TNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVE   53 (53)
T ss_dssp             EESSCCC-CSSTTBCCCCTTCEEEECCCSCSSCEEEECTTSCEEEECGGGEEE
T ss_pred             EEeeeEC-CCCCCeeeECCCCEEEEeEEcCCCeEEEEeCCCCEEEEeHHHEeC
Confidence            5778895 778889999999999888888899999998888999999999985

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=2.7e-14  Score=81.91  Aligned_cols=56  Identities=20%  Similarity=0.159  Sum_probs=49.5

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..+.|.++|. +..+++|+|.+||+|.+.....++||.++..+|+.|+||++||+.+
T Consensus         3 ~~v~Alydf~-a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yV~~~   58 (67)
T d1gl5a_           3 EIVVAMYDFQ-ATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGK   58 (67)
T ss_dssp             SCEEECSCBC-CSSSSBCCBCTTCEEEEEECSSSSEEEEECSSSCEEEEETTSEESS
T ss_pred             EEEEECCCCC-CCCcCCcCCCCCCEEEEEEecCCCcEEEEECCCCEEEEEhHHeEEe
Confidence            3567889996 8888999999999998888888899999988889999999999864

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.48  E-value=3.4e-14  Score=78.37  Aligned_cols=53  Identities=13%  Similarity=0.300  Sum_probs=46.8

Q ss_pred             ceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          85 LQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        85 ~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      +.|.++|. ++.+++|++.+||++.+..+..+|||.++.. |+.|+||++||+.|
T Consensus         3 ~vAl~dy~-~~~~~eLs~~~Gd~v~v~~~~~~~Ww~g~~~-g~~G~~P~~yv~~i   55 (55)
T d1u06a1           3 VLALYDYQ-EKSPREVTMKKGDILTLLNSTNKDWWKVEVN-DRQGFVPAAYVKKL   55 (55)
T ss_dssp             EEECSCBC-CCSTTBCCBCTTCEEEEEECCSSSEEEEEET-TEEEEEEGGGEEEC
T ss_pred             EEECCCCC-CCCcCCccCCCCCEEEEeEEcCCCEEEEEEC-CeEEEEeHHHEEEC
Confidence            56788995 8888999999999998888888999999875 59999999999986

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.48  E-value=2.6e-14  Score=81.96  Aligned_cols=55  Identities=11%  Similarity=0.249  Sum_probs=45.2

Q ss_pred             cceeccccccccC-CCceeeecCcEEEEEcce-----eCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADG-ESGLSLLRDQIVIQIGDE-----VDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~-~~~l~~~~g~~v~~~~~~-----~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      .++|.++|. ++. +.+|+|.+||+|.+..+.     .+|||+++..+|++|+||+||||.|
T Consensus         7 ~~~Alydy~-~~~~~~ELs~~~Gd~i~vl~~~d~~~~~~~Ww~g~~~~G~~G~~P~nyve~i   67 (67)
T d2v1ra1           7 FARALYDFV-PENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   67 (67)
T ss_dssp             EEEESSCBC-CSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC
T ss_pred             EEEECccCC-CCCCCCEeCCCCCCEEEEEEeecCCCcCCCeEEEEeCCCCEEEEEHHHEEEC
Confidence            467889996 544 458999999998665543     4699999998899999999999986

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=4e-14  Score=78.92  Aligned_cols=55  Identities=15%  Similarity=0.178  Sum_probs=47.8

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEe-CCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRN-GENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~-~~~~~G~~P~~~v~~~  139 (139)
                      .++|.++|. +..+++|++.+||+|.+.....+|||+++. .+++.|+||++|||.+
T Consensus         2 ~~~Alydy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~~P~~yVe~i   57 (58)
T d1jo8a_           2 WATAEYDYD-AAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG   57 (58)
T ss_dssp             CEEESSCBC-CCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EEEEccCCC-CCCcCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEchHHEEEc
Confidence            367889996 888889999999999888888899999885 4579999999999975

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=4.9e-14  Score=78.21  Aligned_cols=53  Identities=17%  Similarity=0.231  Sum_probs=46.8

Q ss_pred             ceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          85 LQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        85 ~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ++|.++|. ++.+++|+|.+||+|.+....++|||.++. +|+.|+||++|||.|
T Consensus         4 arAlydy~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~-~g~~G~~P~~yve~i   56 (57)
T d1utia_           4 ARALYDFE-ALEEDELGFRSGEVVEVLDSSNPSWWTGRL-HNKLGLFPANYVAPM   56 (57)
T ss_dssp             EEESSCBC-CCSTTBCCBCTTCEEEEEECCSSSEEEEEE-TTEEEEEEGGGEEEC
T ss_pred             EEECcCCC-CCCcCCcCCCCCCEEEEeEEcCCCEEEEEE-CCcEEEEEHHHEEEc
Confidence            57889996 888889999999999888888899999986 469999999999975

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=5.4e-14  Score=77.79  Aligned_cols=53  Identities=13%  Similarity=0.240  Sum_probs=46.4

Q ss_pred             ceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          85 LQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        85 ~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ++|.++|. ++.+++|+|.+||+|.+.....+|||.++.. |+.|+||++||+.|
T Consensus         4 v~Alydy~-~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~-g~~G~~P~~yv~~v   56 (56)
T d1gcqa_           4 VQALFDFD-PQEDGELGFRRGDFIHVMDNSDPNWWKGACH-GQTGMFPRNYVTPV   56 (56)
T ss_dssp             EEESSCBC-CCSTTBCCBCTTCEEEEEECCSSSEEEEEET-TEEEEEEGGGEEEC
T ss_pred             EEECcCCC-cCCcCCcCCCCCCEEEEEEecCCCEEEEEEC-CeEEEEEHhHEEEC
Confidence            56888995 7788899999999998887778999998874 69999999999986

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=4.2e-14  Score=79.09  Aligned_cols=54  Identities=20%  Similarity=0.294  Sum_probs=47.0

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      .+++.++|. ++.+++|+|.+||+|.+..+ .++||.+++.+|+.|+||++||+.|
T Consensus         3 ~a~alydf~-a~~~~ELs~~~Gd~i~v~~~-~~~ww~~~~~~g~~G~~P~nyve~i   56 (59)
T d1i07a_           3 YAKSKYDFV-ARNSSELSVMKDDVLEILDD-RRQWWKVRNASGDSGFVPNNILDIM   56 (59)
T ss_dssp             EEEESSCBC-CSSTTBCCBCTTCEEEECGG-GCCEEEEECTTSCEEEEEGGGEEEE
T ss_pred             EEEEccCCC-CCCCCeeeEcCCCEEEEEEE-cCCcEEEEEcCCCEEEECHHHeEEC
Confidence            467889995 88899999999999977765 4689999999999999999999964

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=4.5e-14  Score=77.22  Aligned_cols=51  Identities=29%  Similarity=0.365  Sum_probs=45.0

Q ss_pred             ceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEE
Q psy6450          85 LQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQ  137 (139)
Q Consensus        85 ~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~  137 (139)
                      ..+.++|. ++.+++|+|.+||+|.+..+..+|||.++. +++.|+||++|||
T Consensus         3 yval~~y~-a~~~~eLs~~~Gd~v~vl~~~~~gWw~g~~-~g~~G~~P~~yve   53 (53)
T d1wlpb1           3 YVAIKAYT-AVEGDEVSLLEGEAVEVIHKLLDGWWVIRK-DDVTGYFPSMYLQ   53 (53)
T ss_dssp             EEECSCBC-CCSSSBCCBCTTCEEEEEECCTTSSEEEES-SSCEEEECSTTEE
T ss_pred             EEEeeeEC-CCCCCEecCCCCCEEEEEeecCCceEEEEE-CCcEeEecHHhCC
Confidence            46788895 888999999999999888888899999985 5699999999997

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=5.4e-15  Score=90.73  Aligned_cols=54  Identities=22%  Similarity=0.636  Sum_probs=47.5

Q ss_pred             EEEEEeeecCCC-----CCCcccCCCCEEEEEECCCCCeeEEEE------CCeEEEEcCCcEEec
Q psy6450          25 LFVVLYNFKSRH-----ADELDLKPGYKVTVIDTSDQNWWKGKC------MGRVGYFPSNYVIKV   78 (139)
Q Consensus        25 ~~~al~~~~~~~-----~~eLs~~~gd~i~v~~~~~~~w~~~~~------~g~~G~~P~~~v~~~   78 (139)
                      +++|+|||.++.     ..+|+|++||+|.|+++.+.+||.++.      +|++|+||++|+.+.
T Consensus         3 ~vrAlydy~~~~d~~~~~~eLsf~kGdil~V~~~~d~~WW~~~~~~~~~~~g~~G~~Psnyv~e~   67 (96)
T d1kjwa1           3 YIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVER   67 (96)
T ss_dssp             EEEESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHHH
T ss_pred             EEEEcccCcCCcCCCCCCccceEcCCCEEEEeeeccCceEEEEEccCCCCCCCEeEEeccceeee
Confidence            578999999976     358999999999999999999999985      568999999999753

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4.2e-14  Score=88.01  Aligned_cols=59  Identities=29%  Similarity=0.535  Sum_probs=50.4

Q ss_pred             CccEEEEEeeecCCCCCCcccCCCCEEEEEEC---CCCCeeEEEEC--------CeEEEEcCCcEEecCC
Q psy6450          22 PTNLFVVLYNFKSRHADELDLKPGYKVTVIDT---SDQNWWKGKCM--------GRVGYFPSNYVIKVQP   80 (139)
Q Consensus        22 ~~~~~~al~~~~~~~~~eLs~~~gd~i~v~~~---~~~~w~~~~~~--------g~~G~~P~~~v~~~~~   80 (139)
                      +...++|+|+|.++.+++|+|++||+|.|+++   .+.+||.|...        |+.||||.+||+.+..
T Consensus        20 ~~~~~~Alydy~~~~~~eL~f~~Gd~i~Vl~k~~~~~~~WW~g~~~g~~~~~~~g~~G~fP~nyV~~~~~   89 (106)
T d1i1ja_          20 PISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQT   89 (106)
T ss_dssp             CSEEEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEEE
T ss_pred             eeeEEEEccccCCCCCCCccCCCCCEEEEEEecCCCCcceEEEEecCccccccCCcccccccccEEEccc
Confidence            34579999999999999999999999999976   34689999863        3589999999997654

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=5.7e-14  Score=78.22  Aligned_cols=54  Identities=13%  Similarity=0.257  Sum_probs=47.1

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEe
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQE  138 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~  138 (139)
                      ++++|.++|. ++.+++|+|.+||+|.+....++|||.++.. |+.|+||++||+.
T Consensus         3 rr~~Alydy~-~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~-g~~G~~P~~yV~~   56 (58)
T d1uj0a_           3 RRVRALYDFE-AVEDNELTFKHGELITVLDDSDANWWQGENH-RGTGLFPSNFVTT   56 (58)
T ss_dssp             EEEEESSCBC-CCSTTBCCBCTTCEEEEEECCSSSEEEEEET-TEEEEEEGGGEES
T ss_pred             CEEEECCCCC-CCCcCCcCCCCCCEEEEeEEeCCCEEEEEEC-CeEEEEehHhEee
Confidence            3578899996 7788899999999998888888999998874 6999999999984

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

Probab=99.45  E-value=1e-13  Score=77.21  Aligned_cols=54  Identities=17%  Similarity=0.268  Sum_probs=47.4

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      .++|.++|. ++.+++|+|.+||+|.+.....+|||.++.. ++.|+||++||+.+
T Consensus         4 ~~~Alydy~-~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~-g~~G~~P~~yvep~   57 (58)
T d1sema_           4 FVQALFDFN-PQESGELAFKRGDVITLINKDDPNWWEGQLN-NRRGIFPSNYVCPY   57 (58)
T ss_dssp             EEEESSCBC-CSSTTBCCBCTTCEEEEEECSSSSEEEEEET-TEEEEEEGGGEEEC
T ss_pred             EEEECCCCC-cCCcCCcCCCCCCEEEEeEEcCCCEEEEEEC-CeEEEEEhhhEEEC
Confidence            467889995 8888999999999998888888999999875 59999999999864

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.7e-14  Score=82.80  Aligned_cols=56  Identities=13%  Similarity=0.176  Sum_probs=49.8

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..+.|.++|. ++.+++|+|.+||++.+.....++||+++..+|+.|+||++||+.+
T Consensus         9 ~~v~Alydy~-a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~vP~~yv~~~   64 (67)
T d1awwa_           9 KKVVALYDYM-PMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEA   64 (67)
T ss_dssp             CEEEBSSCCC-CSSSSSCCCCSSCEEECCCCCSSSEECCBCTTSCBCCEETTTBCCS
T ss_pred             EEEEECcCCC-CCCcCCcCCCCCCEEEEEEEcCCCeEEEEECCCCEEEEcHHHeEEC
Confidence            3567889995 8889999999999998888888999999988889999999999875

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.44  E-value=3.1e-14  Score=86.68  Aligned_cols=53  Identities=15%  Similarity=0.399  Sum_probs=47.9

Q ss_pred             ccEEEEEeeecCCCCCC-------cccCCCCEEEEEECCCCCeeEEEE---CCeEEEEcCCcE
Q psy6450          23 TNLFVVLYNFKSRHADE-------LDLKPGYKVTVIDTSDQNWWKGKC---MGRVGYFPSNYV   75 (139)
Q Consensus        23 ~~~~~al~~~~~~~~~e-------Ls~~~gd~i~v~~~~~~~w~~~~~---~g~~G~~P~~~v   75 (139)
                      ..+++|+|+|.+..+++       |+|++||+|.|+++.+++||.|++   +|..|+||++++
T Consensus        21 ~~~vrAlydY~~~~dd~~P~~~~~LsF~~GDii~v~~~~d~~WW~gr~~~~~g~~G~~PS~~~   83 (96)
T d1t0ha_          21 AFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVK   83 (96)
T ss_dssp             CEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHH
T ss_pred             cEEEEEeeccCCCCCCCCccccccccCCCCCEEEEeeeeCCCceEEEEcCCCCCEEEecCcHH
Confidence            34699999999999888       999999999999999999999998   578899999864

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.1e-13  Score=80.16  Aligned_cols=55  Identities=15%  Similarity=0.179  Sum_probs=46.3

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcce--eCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDE--VDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~--~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      .++|.++|. ++.+++|+|.+||+|.+....  ..|||.++..+|+.|+||++||+.+
T Consensus         8 ~~~Alydf~-~~~~~eLs~~~Gd~i~vl~~~~~~~~Ww~~~~~~G~~G~vP~~yv~~~   64 (71)
T d1u5sa1           8 VVQTLYPFS-SVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVL   64 (71)
T ss_dssp             EEEESSCCC-CCSSSBCCCCSSCCEEEEECCCTTTCEEEEEETTTEEEEEETTSEEEC
T ss_pred             EEEECccCC-CCCCCEeeECCCCEEEEEEcccCCCCeEEEEECCCCEEEEChHHEEEC
Confidence            467889996 888889999999998655433  3489999989999999999999975

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=6.2e-14  Score=78.64  Aligned_cols=56  Identities=14%  Similarity=0.281  Sum_probs=48.1

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeC-CCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNG-ENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~-~~~~G~~P~~~v~~~  139 (139)
                      ...+|.++|. ++.+++|+|.+||++.+.....+|||+++.. +++.|+||++|||.|
T Consensus         4 ~~~rAl~df~-~~~~~eLs~~~Gd~i~v~~~~~~~W~~~~~~~~g~~G~vP~nyve~i   60 (60)
T d1arka_           4 KIFRAMYDYM-AADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI   60 (60)
T ss_dssp             CCEECCSCCC-CSSSSBCCCCTTCEECCSEECSSSEEEEECTTTCCEEEEETTTCEEC
T ss_pred             cEEEECccCC-CCCCCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEcHHHEEEC
Confidence            3578899996 7888999999999997777778999988754 679999999999976

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.6e-14  Score=80.09  Aligned_cols=55  Identities=9%  Similarity=0.262  Sum_probs=47.5

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..++|.++|. ++.+++|+|.+||+|.+.....+|||.++. +|+.|+||++|||.+
T Consensus         6 ~~v~Aly~y~-a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~-~g~~G~~P~~yVe~~   60 (62)
T d1k4us_           6 SQVEALFSYE-ATQPEDLEFQEGDIILVLSKVNEEWLEGES-KGKVGIFPKVFVEDS   60 (62)
T ss_dssp             EEEECCSCBC-CCSSSBCCBCSSCEEEEEEESSSSCEEEEC-SSCEEEECGGGCCCS
T ss_pred             CEEEECCCCC-CCCcCCcCCCCCCEEEEeEEcCCCEEEEEE-CCcEEEEchHHeEEC
Confidence            3577889996 788899999999999888777899998876 669999999999863

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.5e-13  Score=76.28  Aligned_cols=54  Identities=17%  Similarity=0.198  Sum_probs=46.6

Q ss_pred             ceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEe-CCCeEEeeecCCEEeC
Q psy6450          85 LQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRN-GENRQGVCPLKYLQEV  139 (139)
Q Consensus        85 ~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~-~~~~~G~~P~~~v~~~  139 (139)
                      ..|.++|. ++.+++|++.+||++.+..+..+|||+++. .+|+.|+||++||+.|
T Consensus         3 ~vAl~dy~-a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~pv   57 (57)
T d1efna_           3 FVALYDYE-AITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV   57 (57)
T ss_dssp             EEESSCBC-CSSTTBCCBCTTCEEEEEECSSCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EEECCCCC-CCCcCCcCCCCCCEEEEEEecCCCCEEEEECCCCCEEEEeHHHeEEC
Confidence            45788996 788889999999999888888889998875 5579999999999975

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.41  E-value=2.6e-13  Score=75.51  Aligned_cols=55  Identities=13%  Similarity=0.259  Sum_probs=44.8

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcce--eCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDE--VDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~--~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ++.+|.++|. ++.++||+|.+||+|.+....  .+|||.++. +|+.|+||++|||.|
T Consensus         2 P~~~Alydy~-a~~~~ELs~~~Gd~v~vl~~~~~~~~W~~~~~-~g~~G~vP~~yve~i   58 (58)
T d1oota_           2 PKAVALYSFA-GEESGDLPFRKGDVITILKKSDSQNDWWTGRV-NGREGIFPANYVELV   58 (58)
T ss_dssp             CEEEESSCBC-CCSTTBCCBCTTCEEEEEECCSCTTSEEEEEE-TTEEEEEEGGGEEEC
T ss_pred             CeEEEccCCC-CCCCCCccCCCCCEEEEEEeecCCCCEEEEEE-CCcEEEEcHHHEEEC
Confidence            3578899995 888889999999999766543  357777765 669999999999986

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.7e-13  Score=77.89  Aligned_cols=56  Identities=16%  Similarity=0.292  Sum_probs=46.6

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcc-eeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGD-EVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~-~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ....+.++|. ++.++||+|.+||+|.+... ..++||.++..+|+.|+||.+||+.+
T Consensus         7 ~~~~Alydy~-a~~~~ELs~~~Gd~i~vl~~~~~~~W~~~~~~~g~~G~~P~~yve~~   63 (71)
T d1k9aa1           7 TECIAKYNFH-GTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKR   63 (71)
T ss_dssp             CEEEESSCBC-CSSSSBCCBCTTCEEEEEEECSSTTEEEEECTTCCEEEEEGGGEEEC
T ss_pred             CEEEEccCCC-CCCCCCccCCCCCEEEEeEeccCCCEEEEEeCCCCEEEEchHHeEEc
Confidence            3577889996 78888999999999965544 45689999988889999999999974

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=4.7e-14  Score=78.61  Aligned_cols=54  Identities=13%  Similarity=0.263  Sum_probs=47.1

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..++.++|. ++.+++|++.+||+|.+..+..+|||.++.. |+.|+||++|||.+
T Consensus         4 ~~~al~dy~-~~~~~eLs~~~Gd~i~vl~~~~~~Ww~~~~~-g~~G~~P~~yve~l   57 (58)
T d1ng2a1           4 TYRAIADYE-KTSGSEMALSTGDVVEVVEKSESGWWFCQMK-AKRGWIPASFLEPL   57 (58)
T ss_dssp             EEECSSCBC-CSSTTCCCBCTTCEEEEEECCTTSCCEEEEC-CCCCCCCGGGCCCS
T ss_pred             EEEECccCc-CCCCCCcCCCCCCEEEEEEecCCCeEEEEEC-CCCcEEcHhHEEEC
Confidence            467889995 7888999999999998888888999998875 59999999999875

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=2.7e-13  Score=75.16  Aligned_cols=53  Identities=23%  Similarity=0.396  Sum_probs=41.9

Q ss_pred             ceeccccccccCCCceeeecCcEEEEEcceeCC-EEEEEeCCCeEEeeecCCEEeC
Q psy6450          85 LQVTHNLQIADGESGLSLLRDQIVIQIGDEVDG-MVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        85 ~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g-~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      +.+.++|. ++.+++|+|.+||++.+..+..+| ||.++. +++.|+||++||+.|
T Consensus         3 ~vAlydy~-a~~~~eLs~~~Gd~i~vl~~~~~~~W~~~~~-~g~~G~~P~~yv~~v   56 (57)
T d1opka1           3 FVALYDFV-ASGDNTLSITKGEKLRVLGYNHNGEWCEAQT-KNGQGWVPSNYITPV   56 (57)
T ss_dssp             EEESSCBC-CCSTTBCCBCTTCEEEEEEECTTSSEEEEEC-SSCEEEEEGGGEEES
T ss_pred             EEECccCC-CCCcCCcCCCCCCEEEEeEecCCCCEEEEEE-CCCEeEEchhheEEC
Confidence            56788996 788889999999999666554455 565654 669999999999975

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=4.1e-13  Score=79.44  Aligned_cols=56  Identities=21%  Similarity=0.249  Sum_probs=47.8

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEe----CCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRN----GENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~----~~~~~G~~P~~~v~~~  139 (139)
                      ..+++.++|. ++.+++|+|.+||+|.+....++|||+++.    ..+++|+||++||+.+
T Consensus         8 ~~~~al~~y~-~~~~~eLs~~~Gd~i~Vl~~~~~~Ww~g~~~~~~~~~~~G~~P~~yv~~~   67 (80)
T d1ue9a_           8 EIAQVTSAYV-ASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLL   67 (80)
T ss_dssp             EEEEECSCCC-CCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEEC
T ss_pred             CEEEECcCCC-CCCCCEeeEcCCCEEEEEEEeCCCeEEEEEccCCCCCCEeEEEheeEEEC
Confidence            3578899996 888899999999999888888899999874    3457899999999975

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.6e-13  Score=79.15  Aligned_cols=54  Identities=13%  Similarity=0.199  Sum_probs=46.0

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      .++++.++|. ++.+++|+|.+||+|.+... .++||+++. +|+.|+||.+||+.+
T Consensus        11 ~~~~alydy~-a~~~~ELs~~~Gd~i~vl~~-~~~ww~g~~-~g~~G~fP~~yve~i   64 (74)
T d1j3ta_          11 LKAQALCSWT-AKKDNHLNFSKHDIITVLEQ-QENWWFGEV-HGGRGWFPKSYVKII   64 (74)
T ss_dssp             CEEEESSCBC-CCSTTBCCBCTTCEEEEEEE-CSSEEEEES-TTCCCEEEGGGEEEC
T ss_pred             eEEEEccCCC-CCCCCEecCCCCCEEEEEEc-cCCeEEEEE-CCcEEEEchhhEEEC
Confidence            4678999995 88889999999999976655 579998886 579999999999975

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.9e-13  Score=74.79  Aligned_cols=52  Identities=17%  Similarity=0.300  Sum_probs=38.8

Q ss_pred             ceeccccccccCCCceeeecCcEEEEEcce-eCCEEEEEeCCCeEEeeecCCEEe
Q psy6450          85 LQVTHNLQIADGESGLSLLRDQIVIQIGDE-VDGMVMIRNGENRQGVCPLKYLQE  138 (139)
Q Consensus        85 ~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~-~~g~~~~~~~~~~~G~~P~~~v~~  138 (139)
                      +.+.++|. ++.+++|+|.+||+|.+.... .+|||.++ .+|+.|+||+||||.
T Consensus         3 a~Alydy~-a~~~~ELs~~~Gd~v~v~~~~~~~~W~~~~-~~g~~G~vP~nyvev   55 (56)
T d1gria1           3 AIAKYDFK-ATADDELSFKRGDILKVLNEECDQNWYKAE-LNGKDGFIPKNYIEM   55 (56)
T ss_dssp             EEECSCBC-CCSSSCCCBCTTCEEEC------CCEEEEE-SSSCEEEEEGGGEEC
T ss_pred             EEEeeCCC-CCCCCCcCCCCCCEEEEEeccCCCCeEEEE-ECCcEEEEehhhEEE
Confidence            56788995 888889999999999655544 45666555 577999999999973

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.6e-13  Score=79.59  Aligned_cols=54  Identities=22%  Similarity=0.309  Sum_probs=47.5

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      .++|.++|. +..+++|+|.+||+|.+..+..+|||+++.. +++|+||.+||+.|
T Consensus        12 ~~rAlydy~-a~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~-g~~G~~P~~yv~~i   65 (76)
T d1ujya_          12 IVKARFNFK-QTNEDELSVCKGDIIYVTRVEEGGWWEGTLN-GRTGWFPSNYVREI   65 (76)
T ss_dssp             EEECCSCBC-CSSTTSCCBCSSCCEEESSCCSSSCEEEEET-TEEEEECTTTSEEC
T ss_pred             EEEECccCC-CCCCCCccCCCCCEEEEeEEcCCCEEEEEEC-CcEEEEchHHEEEC
Confidence            567889996 7888899999999998888888999999875 69999999999975

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=4.2e-13  Score=85.01  Aligned_cols=55  Identities=29%  Similarity=0.388  Sum_probs=48.1

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..+.|.++|. +..+++|+|.+||+|.+.....+|||+++. +|+.|+||++||+.+
T Consensus        15 ~~~~alydy~-a~~~dELs~~~Gd~i~Vl~~~~~gWw~g~~-~g~~G~~P~~yv~~~   69 (118)
T d1ng2a2          15 EPYVAIKAYT-AVEGDEVSLLEGEAVEVIHKLLDGWWVIRK-DDVTGYFPSMYLQKS   69 (118)
T ss_dssp             EEEEESSCBC-CCSTTBCCBCTTCEEEEEECCTTSEEEEEE-TTEEEEEEGGGEEET
T ss_pred             cEEEECcCCC-CCCCCEecCCCCCEEEEeEecCCCeEEEEE-CCeEEEEehhhEEEC
Confidence            3567899995 888999999999999888888899999987 469999999999864

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=4.2e-13  Score=78.26  Aligned_cols=56  Identities=14%  Similarity=0.216  Sum_probs=48.3

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCC-----CeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGE-----NRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~-----~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. +..+++|+|.+||+|.+.....+|||+++..+     ++.|+||++||+.+
T Consensus         8 ~~~~al~dy~-~~~~~eLs~~~Gd~i~vl~~~~~~Ww~v~~~~~~~~~g~~G~vP~~yve~~   68 (74)
T d1wfwa_           8 STMTVIKDYY-ALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILAPF   68 (74)
T ss_dssp             CEEECCSCBC-CCSSSCCCBCTTCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEGGGCCBC
T ss_pred             CEEEEeEEEC-CCCCCCccCccCCEEEEEEEcCCCCEEEEeCccCCcCCeeeEEchHHeEEC
Confidence            4678899996 88889999999999988887789999998643     68999999999864

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=6e-13  Score=75.48  Aligned_cols=55  Identities=11%  Similarity=0.196  Sum_probs=47.1

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeC-CCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNG-ENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~-~~~~G~~P~~~v~~~  139 (139)
                      ...|.++|. ++.+++|++.+||++.+.....+|||+++.. +|+.|+||++||+.+
T Consensus         4 ~~vAlydf~-~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~~~   59 (64)
T d1fmka1           4 TFVALYDYE-SRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPS   59 (64)
T ss_dssp             EEEESSCBC-CCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEET
T ss_pred             EEEECccCC-CcCcCCcCCCCCCEEEEEEEcCCCcEEEEECCCCCEEEEehHHeEEC
Confidence            356889996 8888899999999998888888899998864 579999999999864

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=7.3e-13  Score=76.80  Aligned_cols=57  Identities=14%  Similarity=0.262  Sum_probs=45.2

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEE-cceeCCEEEEEe-CCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQI-GDEVDGMVMIRN-GENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~-~~~~~g~~~~~~-~~~~~G~~P~~~v~~~  139 (139)
                      ..++|.++|......++|+|.+||+|.+. ....+|||.++. .+++.|+||++|||.|
T Consensus         8 ~~~~Alydy~~~~~~deLsf~~Gd~i~vl~~~~~~gW~~g~~~~~g~~G~fP~nyVe~i   66 (72)
T d1spka_           8 QKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLL   66 (72)
T ss_dssp             CEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEEC
T ss_pred             CEEEEeeccCCCCCCCEeeEcCCCEEEEEEeecCCCeEEEEECCCCCEEEEchhhEEEC
Confidence            46788899963345678999999999765 455678998875 4579999999999975

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3e-13  Score=78.48  Aligned_cols=55  Identities=16%  Similarity=0.222  Sum_probs=44.5

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEccee-CCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEV-DGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~-~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      .++++.++|. ++.+++|+|.+||+|.+..+.. +|||.++ .++++|+||++|||.|
T Consensus        11 ~~~~alydy~-~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~-~~g~~G~~P~~yve~i   66 (72)
T d1ugva_          11 RKAKALYACK-AEHDSELSFTAGTVFDNVHPSQEPGWLEGT-LNGKTGLIPENYVEFL   66 (72)
T ss_dssp             CCEEESSCBC-CCSSSBCCBCTTCEEBSCCBCSSTTEEEEE-SSSCEEEEEGGGEEEC
T ss_pred             EEEEEcccCC-CCCCCEecCCCCCEEEEeeccCCCCEEEEE-eCCCEEEEchHHEEEC
Confidence            3678899995 7888899999999997665544 4677665 4679999999999975

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=7.9e-14  Score=80.78  Aligned_cols=55  Identities=18%  Similarity=0.338  Sum_probs=47.6

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      .++|.++|. ++.+++|+|.+||+|.+.....+|||+++..+++.|+||++||+.+
T Consensus         8 ~v~Aly~f~-a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~~G~fP~~yv~~~   62 (71)
T d2hspa_           8 AVKALFDYK-AQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEM   62 (71)
T ss_dssp             CEECCSCCC-CSSSSSCCCCTTCEEBSCCCBTTTEECCBCSSCCSCCEETTTCCSC
T ss_pred             EEEEcccCC-cCCcCCccCCCCCEEEEEEecCCCEEEEEECCeEEEEEchHHeEEc
Confidence            467889995 7788899999999998888888999999877767789999999864

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.1e-12  Score=74.04  Aligned_cols=54  Identities=13%  Similarity=0.148  Sum_probs=44.4

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcce---eCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDE---VDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~---~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      .++|.++|. ++.+++|+|.+||+|.+....   .+|||.++. +|++|+||++||+.+
T Consensus         6 ~v~Alydy~-a~~~~ELs~~~Gd~i~vl~~~~~~~~gW~~g~~-~g~~G~~P~~yv~~~   62 (63)
T d1ycsb2           6 VIYALWDYE-PQNDDELPMKEGDCMTIIHREDEDEIEWWWARL-NDKEGYVPRNLLGLY   62 (63)
T ss_dssp             EEEESSCBC-CSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEE-TTEEEEEEGGGEECC
T ss_pred             EEEEeeCCC-CCCCCCcCCCCCCEEEEEEecCCCCCCEEEEEE-CCeEEEEchHHhEeC
Confidence            567889996 888899999999999765433   348999987 569999999999863

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=3e-12  Score=77.68  Aligned_cols=56  Identities=13%  Similarity=0.163  Sum_probs=45.3

Q ss_pred             CccceeccccccccCCCceeeecCcEEEEEcce--eCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          82 ERPLQVTHNLQIADGESGLSLLRDQIVIQIGDE--VDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~--~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...+++.++|. ++.++||+|.+||+|.+..+.  ..+||.++. +|+.|+||++|||.+
T Consensus         5 ~~~~rAlydy~-~~~~~ELs~~~Gd~v~Vl~~~~~~~~w~~~~~-~g~~G~~P~~Yve~~   62 (93)
T d1uffa_           5 SSGYRALYPFE-ARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSF-QGNFGWFPCNYVEKM   62 (93)
T ss_dssp             CCCEEESSCBC-CCSSSCCCBCTTCEEEECSSCCCSSSEEEEEE-TTEEEEEETTTEEEC
T ss_pred             CeEEEECccCC-CCCCCCccCcCCCEEEEEEeccCCCCEEEEEe-CCcEEEEchHHEEEC
Confidence            34678999995 888999999999999777544  356776664 679999999999975

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.29  E-value=1.5e-12  Score=71.89  Aligned_cols=53  Identities=11%  Similarity=0.240  Sum_probs=42.0

Q ss_pred             ceeccccccccCCCceeeecCcEEEEEcc-eeCCEEEEE-eCCCeEEeeecCCEEe
Q psy6450          85 LQVTHNLQIADGESGLSLLRDQIVIQIGD-EVDGMVMIR-NGENRQGVCPLKYLQE  138 (139)
Q Consensus        85 ~~~~~~~~~~~~~~~l~~~~g~~v~~~~~-~~~g~~~~~-~~~~~~G~~P~~~v~~  138 (139)
                      +++.++|. ++.+++|+|.+||+|.+... ..++||.++ ..+|++|+||++|||.
T Consensus         2 aralydf~-a~~~~ELs~~~Gd~i~v~~~~~~~~w~~~~~~~~g~~G~~P~nyvev   56 (56)
T d1zuua1           2 NKVLYAYV-QKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI   56 (56)
T ss_dssp             CEECSCBC-CCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEEC
T ss_pred             CEEeeeeC-CCCCCEeeECCCCEEEEEEEecCCCcEEEeCCCCceEEEEehhhEEC
Confidence            57889995 88888999999999965544 445666554 4568999999999983

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.3e-12  Score=78.05  Aligned_cols=55  Identities=22%  Similarity=0.289  Sum_probs=45.5

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcce----eCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDE----VDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~----~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. ++.+++|+|.+||+|.+..+.    .+|||+++. ++++|+||++||+.+
T Consensus        18 ~~~~a~~~f~-a~~~~eLs~~~Gd~v~vl~~~d~~~~~~Ww~~~~-~g~~G~~P~~yv~~~   76 (92)
T d1ug1a_          18 KLFQAERNFN-AAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDN-GVTKGFVYSSFLKPY   76 (92)
T ss_dssp             GEEEESSCCC-CCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEEC-SSSEEEEEGGGEEEC
T ss_pred             eEEEEcCCcC-CCCCCeEEEecccEEEEEEcccccccCCceEEEe-cccEEEEEhhhceec
Confidence            3578899996 888999999999999666543    478999987 459999999999863

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=9.5e-13  Score=86.19  Aligned_cols=52  Identities=12%  Similarity=0.387  Sum_probs=47.5

Q ss_pred             EEEEEeeecCCCCCC-------cccCCCCEEEEEECCCCCeeEEEE---CCeEEEEcCCcEE
Q psy6450          25 LFVVLYNFKSRHADE-------LDLKPGYKVTVIDTSDQNWWKGKC---MGRVGYFPSNYVI   76 (139)
Q Consensus        25 ~~~al~~~~~~~~~e-------Ls~~~gd~i~v~~~~~~~w~~~~~---~g~~G~~P~~~v~   76 (139)
                      +++|+|+|.+..+++       |+|++||+|.|++..+++||.|++   +|+.|+||++++.
T Consensus        25 ~vra~~dy~~~~d~~~p~~~~~LsF~kGDii~V~~~~d~~WW~gr~~~~~g~~G~iPS~~~~   86 (145)
T d1vyva1          25 AVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLRL   86 (145)
T ss_dssp             EEEESSCBCTTSCCSCSSTTCBCCBCTTCEEEEEEEEETTEEEEEESSTTCCCEEEECHHHH
T ss_pred             EEEEeeeeCCccCCcCCcccccccCcCCCEEEEeeccCCCcEEEEEcCCCCceeEeCCchhh
Confidence            599999999999887       999999999999999999999998   6889999987643

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=3.8e-12  Score=74.98  Aligned_cols=55  Identities=13%  Similarity=0.171  Sum_probs=45.5

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcc----eeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGD----EVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~----~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ..+++.++|. ++.+++|+|.+||+|.+...    ..+|||+++. +++.|+||++||+.+
T Consensus        14 ~~~~Alydy~-a~~~~ELs~~~Gd~i~vl~~~~~~~~~~W~~g~~-~g~~G~vP~~yv~~~   72 (79)
T d1uhca_          14 QVYFAVYTFK-ARNPNELSVSANQKLKILEFKDVTGNTEWWLAEV-NGKKGYVPSNYIRKT   72 (79)
T ss_dssp             CCEEESSCBC-CCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEES-SSCEEEEEGGGEEEC
T ss_pred             EEEEECccCC-CCCCCCccCCCCCEEEEEEeecCCCCCCEEEEEE-CCCEEEEehhhEEEC
Confidence            3578899995 88889999999999966643    2479999985 669999999999974

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.5e-12  Score=72.35  Aligned_cols=53  Identities=8%  Similarity=0.208  Sum_probs=43.0

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEE-eCCCeEEeeecCCEEe
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIR-NGENRQGVCPLKYLQE  138 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~-~~~~~~G~~P~~~v~~  138 (139)
                      .+.+.++|. ++.+++|+|.+||+|.+.... ++||+++ ..+|+.|+||++||++
T Consensus         8 ~~~al~dy~-a~~~~eLs~~~Gd~i~v~~~~-~~ww~~~~~~~g~~G~~P~~yV~~   61 (62)
T d2iima1           8 LVIALHSYE-PSHDGDLGFEKGEQLRILEQS-GEWWKAQSLTTGQEGFIPFNFVAK   61 (62)
T ss_dssp             EEEESSCBC-CCSTTBCCBCTTCEEEEEECC-SSEEEEEETTTCCEEEEEGGGEEE
T ss_pred             EEEECCCCC-cCCcCCcCCCCCCEEEEeEEc-CCCEEEEeccCCeEeEEcHHHEEe
Confidence            467889996 788889999999999777654 5566654 5668999999999986

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.3e-12  Score=77.53  Aligned_cols=55  Identities=16%  Similarity=0.187  Sum_probs=45.9

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcc---------------eeCCEEEEEe-CCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGD---------------EVDGMVMIRN-GENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~---------------~~~g~~~~~~-~~~~~G~~P~~~v~~~  139 (139)
                      +.++.++|. +..+++|+|.+||+|.+...               ..+|||.+++ .+|+.|+||++|||.|
T Consensus         5 ~~raly~y~-~~~~~eLs~~~Gd~i~V~~~~~~~~~~~~~~~~~~~~~GW~~G~~~~~g~~G~FP~nYVe~i   75 (83)
T d1phta_           5 QYRALYDYK-KEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYI   75 (83)
T ss_dssp             EEEECSCBC-CSSTTBCCBCTTCEEEEEHHHHHTTTCCTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEE
T ss_pred             EEEEcCccC-CCCCCcccccCCCEEEEEeccccccccccccccccCCCCeEEEEECCCCcEeeEehhhEEEc
Confidence            467899996 88888999999999977643               2468999986 4689999999999874

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.4e-12  Score=79.57  Aligned_cols=56  Identities=20%  Similarity=0.217  Sum_probs=43.8

Q ss_pred             cceecccccccc-----CCCceeeecCcEEEEEcce-eCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIAD-----GESGLSLLRDQIVIQIGDE-VDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~-----~~~~l~~~~g~~v~~~~~~-~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      .+.|.++|....     .++||+|.+||+|.+..+. .+|||.++..+|++|+||++||+.|
T Consensus        19 ~~~Alydy~~~~~~~~~~e~ELsf~~Gd~i~v~~~~~~~gW~~~~~~~G~~G~~P~nyve~~   80 (96)
T d1wiea_          19 LCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFV   80 (96)
T ss_dssp             EEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEETTCCBCBCCTTSEECC
T ss_pred             EEEEeeeecCcccCCCCCCcEeeEcCCCEEEEEEeeCCCceEEEEeCCCCEEEEehHHeEEC
Confidence            466888886322     3578999999999766544 4578888888899999999999975

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.5e-12  Score=73.81  Aligned_cols=54  Identities=9%  Similarity=0.102  Sum_probs=44.9

Q ss_pred             ccceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCEEeC
Q psy6450          83 RPLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYLQEV  139 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v~~~  139 (139)
                      ...++.++|. ++.+++|+|.+||+|.+.. ..++||+++. +++.|+||.+||+.+
T Consensus         9 ~~~vAl~~y~-~~~~~eLs~~~Gd~v~vl~-~~~~Ww~~~~-~g~~G~vP~~yv~~~   62 (69)
T d1uhfa_           9 EEYIALYPYS-SVEPGDLTFTEGEEILVTQ-KDGEWWTGSI-GDRSGIFPSNYVKPK   62 (69)
T ss_dssp             EEEECSSCBC-CSSSSBCCBCTTCEEEECE-EETTEEEECS-TTCCEEECGGGCEEC
T ss_pred             cEEEECccCC-CCCcCCcCCCCCCEEEEEE-ecCCEEEEEE-CCcEEEEchhhEEEC
Confidence            3567889996 7788899999999997664 4689999886 569999999999874

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=4.7e-12  Score=71.88  Aligned_cols=54  Identities=15%  Similarity=0.246  Sum_probs=43.9

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcceeCCEEEEEe-CCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGDEVDGMVMIRN-GENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~~~~g~~~~~~-~~~~~G~~P~~~v~~~  139 (139)
                      .+.|.++|. ++.+++|+|.+||++.+... .++||+++. .+|+.|+||++||+.+
T Consensus         6 ~vvAlydy~-~~~~~eLs~~~Gd~i~v~~~-~~~ww~~~~~~~g~~G~vP~~yv~~~   60 (65)
T d1qcfa1           6 IVVALYDYE-AIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARV   60 (65)
T ss_dssp             EEEESSCBC-CCSTTBCCBCTTCEEEEEEC-CTTEEEEEETTTCCEEEEEGGGEEET
T ss_pred             EEEECCcCC-CCCcCccCCCCCCEEEEEEE-CCCCEEEEEccCCCEEEEchHHeEEC
Confidence            456789996 78888999999999976654 567887764 5679999999999974

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=6e-12  Score=72.14  Aligned_cols=56  Identities=18%  Similarity=0.062  Sum_probs=42.9

Q ss_pred             ccceeccccc-----cccCCCceeeecCcEEEEEc-ceeCCEEEEEeC-CCeEEeeecCCEEe
Q psy6450          83 RPLQVTHNLQ-----IADGESGLSLLRDQIVIQIG-DEVDGMVMIRNG-ENRQGVCPLKYLQE  138 (139)
Q Consensus        83 ~~~~~~~~~~-----~~~~~~~l~~~~g~~v~~~~-~~~~g~~~~~~~-~~~~G~~P~~~v~~  138 (139)
                      ++.++.++|.     .+...++|+|.+||+|.+.. +.++|||.++.. +|+.|+||++|||-
T Consensus         5 Pk~~a~~~y~~~~~~~~~~~~eLsf~~GD~i~Vl~~~~~~gWw~G~~~~~g~~G~fP~nyVeP   67 (69)
T d1gcqc_           5 PKMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHP   67 (69)
T ss_dssp             CEEEECSCBSSSSCCGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEE
T ss_pred             CcEEEeeeEeccCCCCCCCCCEeeEcCCCEEEEEEEecCCCEEEEEECCCCCEEEEeHHHEEE
Confidence            3456666664     24567789999999996654 455799999974 68999999999984

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.18  E-value=4.5e-12  Score=75.35  Aligned_cols=55  Identities=25%  Similarity=0.349  Sum_probs=44.2

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEcc-----eeCCEEEEEe---------CCCeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIGD-----EVDGMVMIRN---------GENRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~~-----~~~g~~~~~~---------~~~~~G~~P~~~v~~~  139 (139)
                      .++|.++|. ++.+++|+|.+||+|.+...     ..+|||.+..         .+|+.|+||+|||+.|
T Consensus        14 ~~~Alydy~-a~~~~ELs~~~Gd~i~Vl~~~~~~~~~dgWw~G~~~~~~~~~~~~~g~~G~fP~nyVe~i   82 (83)
T d1bb9a_          14 KVQAQHDYT-ATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV   82 (83)
T ss_dssp             EEEESSCBC-CSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEE
T ss_pred             EEEEceeEC-CCCCCEecCcCCCEEEEEEccCCCcccCCEeEEEecCCccccccCCCCEEEEchhHeEEc
Confidence            578899995 88888999999999976543     3468998763         2467899999999975

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.13  E-value=2.9e-12  Score=78.20  Aligned_cols=53  Identities=15%  Similarity=0.151  Sum_probs=42.7

Q ss_pred             ceeccccccccC-----CCceeeecCcEEEEEcceeCCEEEEEe-----CCCeEEeeecCCEEe
Q psy6450          85 LQVTHNLQIADG-----ESGLSLLRDQIVIQIGDEVDGMVMIRN-----GENRQGVCPLKYLQE  138 (139)
Q Consensus        85 ~~~~~~~~~~~~-----~~~l~~~~g~~v~~~~~~~~g~~~~~~-----~~~~~G~~P~~~v~~  138 (139)
                      ++|.++|. ++.     ..+|+|.+||+|.+..+.++|||.++.     .+|++|+||+|||++
T Consensus         4 vrAlydy~-~~~d~~~~~~eLsf~kGdil~V~~~~d~~WW~~~~~~~~~~~g~~G~~Psnyv~e   66 (96)
T d1kjwa1           4 IRALFDYD-KTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVE   66 (96)
T ss_dssp             EEESSCBC-HHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHH
T ss_pred             EEEcccCc-CCcCCCCCCccceEcCCCEEEEeeeccCceEEEEEccCCCCCCCEeEEeccceee
Confidence            46778886 333     347999999999888888899999984     467899999999863

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.11  E-value=2.5e-11  Score=78.26  Aligned_cols=51  Identities=14%  Similarity=0.376  Sum_probs=46.0

Q ss_pred             EEEEEeeecCCCCCC-------cccCCCCEEEEEECCCCCeeEEEE---CCeEEEEcCCcE
Q psy6450          25 LFVVLYNFKSRHADE-------LDLKPGYKVTVIDTSDQNWWKGKC---MGRVGYFPSNYV   75 (139)
Q Consensus        25 ~~~al~~~~~~~~~e-------Ls~~~gd~i~v~~~~~~~w~~~~~---~g~~G~~P~~~v   75 (139)
                      .++|+|+|.+..+++       |+|++||+|.|++..+++||.+++   .|..|+||+.++
T Consensus        25 ~vra~~~Y~~~~d~~~P~~~~~LsF~~gdil~v~~~~d~~WW~~r~~~~~~~~G~iPs~~~   85 (136)
T d1vyua1          25 AVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQR   85 (136)
T ss_dssp             EEEESSCEEGGGCTTCSSTTCBCEECTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHH
T ss_pred             EEEEeeccCCCCCCCCcccCcccCCCCCCEEEEEeccCCCcEEEEeccCCCceeccCchHH
Confidence            489999999988777       999999999999999999999997   467899999874

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=8.5e-11  Score=72.72  Aligned_cols=55  Identities=16%  Similarity=0.031  Sum_probs=44.2

Q ss_pred             cceeccccccccCCCceeeecCcEEEEEc---ceeCCEEEEEeCC-------CeEEeeecCCEEeC
Q psy6450          84 PLQVTHNLQIADGESGLSLLRDQIVIQIG---DEVDGMVMIRNGE-------NRQGVCPLKYLQEV  139 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~~~g~~v~~~~---~~~~g~~~~~~~~-------~~~G~~P~~~v~~~  139 (139)
                      .++|.++|. +...++|+|.+||+|.+..   ...++||.++..+       ++.|+||++||+++
T Consensus        23 ~~~Alydy~-~~~~~eL~f~~Gd~i~Vl~k~~~~~~~WW~g~~~g~~~~~~~g~~G~fP~nyV~~~   87 (106)
T d1i1ja_          23 MAVALQDYM-APDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVRED   87 (106)
T ss_dssp             EEEESSCBC-CSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEE
T ss_pred             EEEEccccC-CCCCCCccCCCCCEEEEEEecCCCCcceEEEEecCccccccCCcccccccccEEEc
Confidence            578899996 8888899999999996654   3557899887433       56899999999863

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.94  E-value=1.9e-10  Score=69.62  Aligned_cols=52  Identities=12%  Similarity=0.014  Sum_probs=42.7

Q ss_pred             cceeccccccccCCCc-------eeeecCcEEEEEcceeCCEEEEEeC--CCeEEeeecCCE
Q psy6450          84 PLQVTHNLQIADGESG-------LSLLRDQIVIQIGDEVDGMVMIRNG--ENRQGVCPLKYL  136 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~-------l~~~~g~~v~~~~~~~~g~~~~~~~--~~~~G~~P~~~v  136 (139)
                      .+++.++|. +..+++       |+|.+||+|.+....+++||.++..  +++.|+||++|+
T Consensus        23 ~vrAlydY~-~~~dd~~P~~~~~LsF~~GDii~v~~~~d~~WW~gr~~~~~g~~G~~PS~~~   83 (96)
T d1t0ha_          23 AVRTNVRYS-AAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVK   83 (96)
T ss_dssp             EEEESSCBC-CCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHH
T ss_pred             EEEEeeccC-CCCCCCCccccccccCCCCCEEEEeeeeCCCceEEEEcCCCCCEEEecCcHH
Confidence            467889996 555555       9999999998888888999999974  568999999863

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.77  E-value=2.5e-09  Score=69.53  Aligned_cols=52  Identities=8%  Similarity=-0.027  Sum_probs=42.9

Q ss_pred             cceeccccccccCCCc-------eeeecCcEEEEEcceeCCEEEEEe--CCCeEEeeecCCE
Q psy6450          84 PLQVTHNLQIADGESG-------LSLLRDQIVIQIGDEVDGMVMIRN--GENRQGVCPLKYL  136 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~-------l~~~~g~~v~~~~~~~~g~~~~~~--~~~~~G~~P~~~v  136 (139)
                      .+++.++|. +..+++       |+|.+||+|.+....+++||.++.  .+|+.|+||++|+
T Consensus        25 ~vra~~dy~-~~~d~~~p~~~~~LsF~kGDii~V~~~~d~~WW~gr~~~~~g~~G~iPS~~~   85 (145)
T d1vyva1          25 AVKTNVSYC-GALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLR   85 (145)
T ss_dssp             EEEESSCBC-TTSCCSCSSTTCBCCBCTTCEEEEEEEEETTEEEEEESSTTCCCEEEECHHH
T ss_pred             EEEEeeeeC-CccCCcCCcccccccCcCCCEEEEeeccCCCcEEEEEcCCCCceeEeCCchh
Confidence            367788885 666554       999999999889999999999996  3578999999764

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.38  E-value=1.1e-07  Score=60.80  Aligned_cols=51  Identities=4%  Similarity=-0.070  Sum_probs=40.2

Q ss_pred             cceeccccccccCCCc-------eeeecCcEEEEEcceeCCEEEEEe--CCCeEEeeecCC
Q psy6450          84 PLQVTHNLQIADGESG-------LSLLRDQIVIQIGDEVDGMVMIRN--GENRQGVCPLKY  135 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~-------l~~~~g~~v~~~~~~~~g~~~~~~--~~~~~G~~P~~~  135 (139)
                      .+++.++|. +..+++       |+|..||+|.+....+++||.++.  .+++.|+||+.|
T Consensus        25 ~vra~~~Y~-~~~d~~~P~~~~~LsF~~gdil~v~~~~d~~WW~~r~~~~~~~~G~iPs~~   84 (136)
T d1vyua1          25 AVRTNVSYC-GVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQ   84 (136)
T ss_dssp             EEEESSCEE-GGGCTTCSSTTCBCEECTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHH
T ss_pred             EEEEeeccC-CCCCCCCcccCcccCCCCCCEEEEEeccCCCcEEEEeccCCCceeccCchH
Confidence            356778886 333333       999999999888888899999985  346789999987

>d1ri9a_ b.34.2.1 (A:) Fyn-binding protein (T-cell adapter protein adap) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn-binding protein (T-cell adapter protein adap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.0004  Score=39.20  Aligned_cols=40  Identities=25%  Similarity=0.279  Sum_probs=33.4

Q ss_pred             CCceeeecCcEEEEEcceeCCEEEEEeCCCeEEeeecCCE
Q psy6450          97 ESGLSLLRDQIVIQIGDEVDGMVMIRNGENRQGVCPLKYL  136 (139)
Q Consensus        97 ~~~l~~~~g~~v~~~~~~~~g~~~~~~~~~~~G~~P~~~v  136 (139)
                      ...|.+.+||.|-+.....+|-|+||+..|+-|+|+.+.|
T Consensus        36 ~~dL~vk~GE~ldVIr~t~~~k~LcRN~~GkYGYV~~~~l   75 (77)
T d1ri9a_          36 TRDLQVKPGESLEVIQTTDDTKVLCRNEEGKYGYVLRSYL   75 (77)
T ss_dssp             TTBCCCCTTCBCEEEEESSSSEEEEEETTTEEEEEEGGGS
T ss_pred             cccCCcCCCCEEEEEEeCCCCeEEEEcCCCcEEEEEeeee
Confidence            3469999999885555566999999999999999998765

>d1ri9a_ b.34.2.1 (A:) Fyn-binding protein (T-cell adapter protein adap) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn-binding protein (T-cell adapter protein adap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.00078  Score=37.97  Aligned_cols=40  Identities=30%  Similarity=0.523  Sum_probs=36.0

Q ss_pred             CCCCcccCCCCEEEEEECCCCCeeEEEE-CCeEEEEcCCcE
Q psy6450          36 HADELDLKPGYKVTVIDTSDQNWWKGKC-MGRVGYFPSNYV   75 (139)
Q Consensus        36 ~~~eLs~~~gd~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v   75 (139)
                      +..+|.++.|+.|.|++..+.+-|.|++ .|.-|+|+..++
T Consensus        35 g~~dL~vk~GE~ldVIr~t~~~k~LcRN~~GkYGYV~~~~l   75 (77)
T d1ri9a_          35 GTRDLQVKPGESLEVIQTTDDTKVLCRNEEGKYGYVLRSYL   75 (77)
T ss_dssp             CTTBCCCCTTCBCEEEEESSSSEEEEEETTTEEEEEEGGGS
T ss_pred             CcccCCcCCCCEEEEEEeCCCCeEEEEcCCCcEEEEEeeee
Confidence            4578999999999999988889999999 899999998775