Psyllid ID: psy6459

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60------
Protein Sequence
MVLLLEHLEALVSRHERSLRSTVVKRQAQNQSGVSSEAEVLKALKSLFEHHKALDEKGKGTAFQKI
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccEccc
Coil and Loop (DISEMBL)
MVLLLEHLEALVSRHERSLRSTVVKrqaqnqsgvsSEAEVLKALKSLFEHHKAldekgkgtafqki
Flexible Loop (DISEMBL)
MVLLLEHLEALVsrherslrstvvkrqaqnqsgvsseAEVLKALKSLFEhhkaldekgkgtafqki
Low Complexity Region (SEG)
MVLLLEHLEALVSRHERSLRSTVVKRQAQNQSGVSSEAEVLKALKSLFEHHKALDEKGKGTAFQKI
Disordered region (IsUnstruct)
******************************************************************
Disordered Region (DISOPRED)
*VLLLEHLEALVSRHERSL********************VLKALKSLFEHHKALDEKGKGT*FQ**
Disordered Region (DISEMBL)
MVLLLEHLEALVSR***********************AEVLKALKSLFEHHKALDEK*********
Disordered Region (DISPRO)
*VLLLEHLEALVSRHERSLRSTVVKRQ******VSSEAEVLKALKSLFEHHKALDEKGKGT*F***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVLLLEHLEALVSRHERSLRSTVVKRQAQNQSGVSSEAEVLKALKSLFEHHKALDEKGKGTAFQKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	66	2.2.26 [Sep-21-2011]
Q21049	1139	Liprin-alpha OS=Caenorhab	yes	N/A	0.833	0.048	0.890	2e-20
Q8BSS9	1257	Liprin-alpha-2 OS=Mus mus	yes	N/A	0.833	0.043	0.909	2e-20
O75334	1257	Liprin-alpha-2 OS=Homo sa	yes	N/A	0.833	0.043	0.909	2e-20
P60469	1043	Liprin-alpha-3 OS=Mus mus	no	N/A	0.833	0.052	0.890	3e-20
Q91Z79	1192	Liprin-alpha-3 OS=Rattus	no	N/A	0.833	0.046	0.890	3e-20
O75145	1194	Liprin-alpha-3 OS=Homo sa	no	N/A	0.833	0.046	0.890	4e-20
Q13136	1202	Liprin-alpha-1 OS=Homo sa	no	N/A	0.833	0.045	0.890	5e-20
Q91Z80	1043	Liprin-alpha-4 (Fragment)	no	N/A	0.363	0.023	0.958	3e-05

>sp|Q21049|LIPA_CAEEL Liprin-alpha OS=Caenorhabditis elegans GN=syd-2 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/55 (89%), Positives = 51/55 (92%)

Query: 3   LLLEHLEALVSRHERSLRSTVVKRQAQNQSGVSSEAEVLKALKSLFEHHKALDEK 57
           LLLEHLE LVSRHERSLR TV+KRQAQN +GVSSE EVLKALKSLFEHHKALDEK
Sbjct: 126 LLLEHLECLVSRHERSLRMTVMKRQAQNHAGVSSEVEVLKALKSLFEHHKALDEK 180

May play a role in regulating the structure of the neuronal region, called the active zone, from which synaptic vesicles send neurotransmitter signals across the synapse.
Caenorhabditis elegans (taxid: 6239)

>sp|Q8BSS9|LIPA2_MOUSE Liprin-alpha-2 OS=Mus musculus GN=Ppfia2 PE=1 SV=2

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/55 (90%), Positives = 51/55 (92%)

Query: 3   LLLEHLEALVSRHERSLRSTVVKRQAQNQSGVSSEAEVLKALKSLFEHHKALDEK 57
           LLLEHLE LVSRHERSLR TVVKRQAQ+ SGVSSE EVLKALKSLFEHHKALDEK
Sbjct: 136 LLLEHLECLVSRHERSLRMTVVKRQAQSPSGVSSEVEVLKALKSLFEHHKALDEK 190

Alters PTPRF cellular localization and induces PTPRF clustering. May regulate the disassembly of focal adhesions. May localize receptor-like tyrosine phosphatases type 2A at specific sites on the plasma membrane, possibly regulating their interaction with the extracellular environment and their association with substrates.

Mus musculus (taxid: 10090)

>sp|O75334|LIPA2_HUMAN Liprin-alpha-2 OS=Homo sapiens GN=PPFIA2 PE=1 SV=2

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/55 (90%), Positives = 51/55 (92%)

Query: 3   LLLEHLEALVSRHERSLRSTVVKRQAQNQSGVSSEAEVLKALKSLFEHHKALDEK 57
           LLLEHLE LVSRHERSLR TVVKRQAQ+ SGVSSE EVLKALKSLFEHHKALDEK
Sbjct: 136 LLLEHLECLVSRHERSLRMTVVKRQAQSPSGVSSEVEVLKALKSLFEHHKALDEK 190

Alters PTPRF cellular localization and induces PTPRF clustering. May regulate the disassembly of focal adhesions. May localize receptor-like tyrosine phosphatases type 2A at specific sites on the plasma membrane, possibly regulating their interaction with the extracellular environment and their association with substrates.

Homo sapiens (taxid: 9606)

>sp|P60469|LIPA3_MOUSE Liprin-alpha-3 OS=Mus musculus GN=Ppfia3 PE=1 SV=1

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 49/55 (89%), Positives = 50/55 (90%)

Query: 3   LLLEHLEALVSRHERSLRSTVVKRQAQNQSGVSSEAEVLKALKSLFEHHKALDEK 57
           LLLEHLE LVSRHERSLR TVVKRQAQ+  GVSSE EVLKALKSLFEHHKALDEK
Sbjct: 115 LLLEHLECLVSRHERSLRMTVVKRQAQSPGGVSSEVEVLKALKSLFEHHKALDEK 169

May regulate the disassembly of focal adhesions. May localize receptor-like tyrosine phosphatases type 2A at specific sites on the plasma membrane, possibly regulating their interaction with the extracellular environment and their association with substrates.

Mus musculus (taxid: 10090)

>sp|Q91Z79|LIPA3_RAT Liprin-alpha-3 OS=Rattus norvegicus GN=Ppfia3 PE=1 SV=2

 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 49/55 (89%), Positives = 50/55 (90%)

Query: 3   LLLEHLEALVSRHERSLRSTVVKRQAQNQSGVSSEAEVLKALKSLFEHHKALDEK 57
           LLLEHLE LVSRHERSLR TVVKRQAQ+  GVSSE EVLKALKSLFEHHKALDEK
Sbjct: 115 LLLEHLECLVSRHERSLRMTVVKRQAQSPGGVSSEVEVLKALKSLFEHHKALDEK 169

May regulate the disassembly of focal adhesions. May localize receptor-like tyrosine phosphatases type 2A at specific sites on the plasma membrane, possibly regulating their interaction with the extracellular environment and their association with substrates.

Rattus norvegicus (taxid: 10116)

>sp|O75145|LIPA3_HUMAN Liprin-alpha-3 OS=Homo sapiens GN=PPFIA3 PE=1 SV=3

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 49/55 (89%), Positives = 50/55 (90%)

Query: 3   LLLEHLEALVSRHERSLRSTVVKRQAQNQSGVSSEAEVLKALKSLFEHHKALDEK 57
           LLLEHLE LVSRHERSLR TVVKRQAQ+  GVSSE EVLKALKSLFEHHKALDEK
Sbjct: 115 LLLEHLECLVSRHERSLRMTVVKRQAQSPGGVSSEVEVLKALKSLFEHHKALDEK 169

May regulate the disassembly of focal adhesions. May localize receptor-like tyrosine phosphatases type 2A at specific sites on the plasma membrane, possibly regulating their interaction with the extracellular environment and their association with substrates.

Homo sapiens (taxid: 9606)

>sp|Q13136|LIPA1_HUMAN Liprin-alpha-1 OS=Homo sapiens GN=PPFIA1 PE=1 SV=1

 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 49/55 (89%), Positives = 51/55 (92%)

Query: 3   LLLEHLEALVSRHERSLRSTVVKRQAQNQSGVSSEAEVLKALKSLFEHHKALDEK 57
           LLLEHLE LVSRHERSLR TVVKRQAQ+ +GVSSE EVLKALKSLFEHHKALDEK
Sbjct: 123 LLLEHLECLVSRHERSLRMTVVKRQAQSPAGVSSEVEVLKALKSLFEHHKALDEK 177

May regulate the disassembly of focal adhesions. May localize receptor-like tyrosine phosphatases type 2A at specific sites on the plasma membrane, possibly regulating their interaction with the extracellular environment and their association with substrates.

Homo sapiens (taxid: 9606)

>sp|Q91Z80|LIPA4_RAT Liprin-alpha-4 (Fragment) OS=Rattus norvegicus GN=Ppfia4 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/24 (95%), Positives = 23/24 (95%)

Query: 34 VSSEAEVLKALKSLFEHHKALDEK 57
          VSSE EVLKALKSLFEHHKALDEK
Sbjct: 2  VSSEVEVLKALKSLFEHHKALDEK 25


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.126    0.322 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,265,027
Number of Sequences: 539616
Number of extensions: 419056
Number of successful extensions: 1461
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1453
Number of HSP's gapped (non-prelim): 8
length of query: 66
length of database: 191,569,459
effective HSP length: 38
effective length of query: 28
effective length of database: 171,064,051
effective search space: 4789793428
effective search space used: 4789793428
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)

May regulate the disassembly of focal adhesions. May localize receptor-like tyrosine phosphatases type 2A at specific sites on the plasma membrane, possibly regulating their interaction with the extracellular environment and their association with substrates.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	66
47216359	1342	unnamed protein product [Tetraodon nigro	0.833	0.040	0.909	4e-19
395820369	1552	PREDICTED: liprin-alpha-2 [Otolemur garn	0.833	0.035	0.909	5e-19
334347917	1072	PREDICTED: liprin-alpha-2-like [Monodelp	0.833	0.051	0.909	6e-19
426373578	1190	PREDICTED: liprin-alpha-2 [Gorilla goril	0.833	0.046	0.909	6e-19
26326615	215	unnamed protein product [Mus musculus] g	0.833	0.255	0.909	6e-19
42558981	1257	RecName: Full=Liprin-alpha-2; AltName: F	0.833	0.043	0.909	6e-19
17569509	1139	Protein SYD-2 [Caenorhabditis elegans] g	0.833	0.048	0.890	6e-19
410965184	1251	PREDICTED: liprin-alpha-2 isoform 3 [Fel	0.833	0.043	0.909	6e-19
308494581	1180	CRE-SYD-2 protein [Caenorhabditis remane	0.833	0.046	0.890	6e-19
157824053	1251	liprin-alpha-2 [Rattus norvegicus] gi|14	0.833	0.043	0.909	7e-19

>gi|47216359|emb|CAG02417.1| unnamed protein product [Tetraodon nigroviridis]

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/55 (90%), Positives = 51/55 (92%)

Query: 3  LLLEHLEALVSRHERSLRSTVVKRQAQNQSGVSSEAEVLKALKSLFEHHKALDEK 57
          LLLEHLE LVSRHERSLR TVVKRQAQ+ SGVSSE EVLKALKSLFEHHKALDEK
Sbjct: 37 LLLEHLECLVSRHERSLRMTVVKRQAQSPSGVSSEVEVLKALKSLFEHHKALDEK 91

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395820369|ref|XP_003783540.1| PREDICTED: liprin-alpha-2 [Otolemur garnettii]

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 50/55 (90%), Positives = 51/55 (92%)

Query: 3   LLLEHLEALVSRHERSLRSTVVKRQAQNQSGVSSEAEVLKALKSLFEHHKALDEK 57
           LLLEHLE LVSRHERSLR TVVKRQAQ+ SGVSSE EVLKALKSLFEHHKALDEK
Sbjct: 444 LLLEHLECLVSRHERSLRMTVVKRQAQSPSGVSSEVEVLKALKSLFEHHKALDEK 498

Source: Otolemur garnettii

Species: Otolemur garnettii

Genus: Otolemur

Family: Galagidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|334347917|ref|XP_003341997.1| PREDICTED: liprin-alpha-2-like [Monodelphis domestica]

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 50/55 (90%), Positives = 51/55 (92%)

Query: 3   LLLEHLEALVSRHERSLRSTVVKRQAQNQSGVSSEAEVLKALKSLFEHHKALDEK 57
           LLLEHLE LVSRHERSLR TVVKRQAQ+ SGVSSE EVLKALKSLFEHHKALDEK
Sbjct: 136 LLLEHLECLVSRHERSLRMTVVKRQAQSPSGVSSEVEVLKALKSLFEHHKALDEK 190

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426373578|ref|XP_004053675.1| PREDICTED: liprin-alpha-2 [Gorilla gorilla gorilla]

 Score = 97.8 bits (242), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 50/55 (90%), Positives = 51/55 (92%)

Query: 3   LLLEHLEALVSRHERSLRSTVVKRQAQNQSGVSSEAEVLKALKSLFEHHKALDEK 57
           LLLEHLE LVSRHERSLR TVVKRQAQ+ SGVSSE EVLKALKSLFEHHKALDEK
Sbjct: 136 LLLEHLECLVSRHERSLRMTVVKRQAQSPSGVSSEVEVLKALKSLFEHHKALDEK 190

Source: Gorilla gorilla gorilla

Species: Gorilla gorilla

Genus: Gorilla

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|26326615|dbj|BAC27051.1| unnamed protein product [Mus musculus] gi|148689739|gb|EDL21686.1| protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2, isoform CRA_b [Mus musculus]

 Score = 97.8 bits (242), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 50/55 (90%), Positives = 51/55 (92%)

Query: 3   LLLEHLEALVSRHERSLRSTVVKRQAQNQSGVSSEAEVLKALKSLFEHHKALDEK 57
           LLLEHLE LVSRHERSLR TVVKRQAQ+ SGVSSE EVLKALKSLFEHHKALDEK
Sbjct: 136 LLLEHLECLVSRHERSLRMTVVKRQAQSPSGVSSEVEVLKALKSLFEHHKALDEK 190

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|42558981|sp|Q8BSS9.2|LIPA2_MOUSE RecName: Full=Liprin-alpha-2; AltName: Full=Protein tyrosine phosphatase receptor type f polypeptide-interacting protein alpha-2; Short=PTPRF-interacting protein alpha-2

 Score = 97.8 bits (242), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 50/55 (90%), Positives = 51/55 (92%)

Query: 3   LLLEHLEALVSRHERSLRSTVVKRQAQNQSGVSSEAEVLKALKSLFEHHKALDEK 57
           LLLEHLE LVSRHERSLR TVVKRQAQ+ SGVSSE EVLKALKSLFEHHKALDEK
Sbjct: 136 LLLEHLECLVSRHERSLRMTVVKRQAQSPSGVSSEVEVLKALKSLFEHHKALDEK 190

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|17569509|ref|NP_509768.1| Protein SYD-2 [Caenorhabditis elegans] gi|42558970|sp|Q21049.1|LIPA_CAEEL RecName: Full=Liprin-alpha; AltName: Full=LAR-interacting protein alpha; AltName: Full=Synapse defective protein 2 gi|5713196|gb|AAD47840.1|AF170122_1 liprin-alpha homolog SYD-2 [Caenorhabditis elegans] gi|3877965|emb|CAA90660.1| Protein SYD-2 [Caenorhabditis elegans]

 Score = 97.8 bits (242), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 49/55 (89%), Positives = 51/55 (92%)

Query: 3   LLLEHLEALVSRHERSLRSTVVKRQAQNQSGVSSEAEVLKALKSLFEHHKALDEK 57
           LLLEHLE LVSRHERSLR TV+KRQAQN +GVSSE EVLKALKSLFEHHKALDEK
Sbjct: 126 LLLEHLECLVSRHERSLRMTVMKRQAQNHAGVSSEVEVLKALKSLFEHHKALDEK 180

Source: Caenorhabditis elegans

Species: Caenorhabditis elegans

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|410965184|ref|XP_003989130.1| PREDICTED: liprin-alpha-2 isoform 3 [Felis catus]

 Score = 97.8 bits (242), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 50/55 (90%), Positives = 51/55 (92%)

Query: 3   LLLEHLEALVSRHERSLRSTVVKRQAQNQSGVSSEAEVLKALKSLFEHHKALDEK 57
           LLLEHLE LVSRHERSLR TVVKRQAQ+ SGVSSE EVLKALKSLFEHHKALDEK
Sbjct: 136 LLLEHLECLVSRHERSLRMTVVKRQAQSPSGVSSEVEVLKALKSLFEHHKALDEK 190

Source: Felis catus

Species: Felis catus

Genus: Felis

Family: Felidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|308494581|ref|XP_003109479.1| CRE-SYD-2 protein [Caenorhabditis remanei] gi|308245669|gb|EFO89621.1| CRE-SYD-2 protein [Caenorhabditis remanei]

 Score = 97.8 bits (242), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 49/55 (89%), Positives = 51/55 (92%)

Query: 3   LLLEHLEALVSRHERSLRSTVVKRQAQNQSGVSSEAEVLKALKSLFEHHKALDEK 57
           LLLEHLE LVSRHERSLR TV+KRQAQN +GVSSE EVLKALKSLFEHHKALDEK
Sbjct: 161 LLLEHLECLVSRHERSLRMTVMKRQAQNHAGVSSEVEVLKALKSLFEHHKALDEK 215

Source: Caenorhabditis remanei

Species: Caenorhabditis remanei

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|157824053|ref|NP_001102215.1| liprin-alpha-2 [Rattus norvegicus] gi|149067045|gb|EDM16778.1| protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 (predicted) [Rattus norvegicus]

 Score = 97.8 bits (242), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 50/55 (90%), Positives = 51/55 (92%)

Query: 3   LLLEHLEALVSRHERSLRSTVVKRQAQNQSGVSSEAEVLKALKSLFEHHKALDEK 57
           LLLEHLE LVSRHERSLR TVVKRQAQ+ SGVSSE EVLKALKSLFEHHKALDEK
Sbjct: 136 LLLEHLECLVSRHERSLRMTVVKRQAQSPSGVSSEVEVLKALKSLFEHHKALDEK 190

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	66
UNIPROTKB|E1BND7	969	PPFIA2 "Uncharacterized protei	0.833	0.056	0.909	5.3e-19
WB|WBGene00006364	1139	syd-2 [Caenorhabditis elegans	0.833	0.048	0.890	6.6e-19
RGD|1305021	1157	Ppfia2 "protein tyrosine phosp	0.833	0.047	0.909	6.8e-19
UNIPROTKB|E1C243	1177	PPFIA2 "Uncharacterized protei	0.833	0.046	0.909	7e-19
UNIPROTKB|O75334	1257	PPFIA2 "Liprin-alpha-2" [Homo	0.833	0.043	0.909	7.6e-19
MGI|MGI:2443834	1257	Ppfia2 "protein tyrosine phosp	0.833	0.043	0.909	7.6e-19
FB|FBgn0046704	1201	Liprin-alpha "Liprin-alpha" [D	0.833	0.045	0.909	1.5e-18
UNIPROTKB|Q13136	1202	PPFIA1 "Liprin-alpha-1" [Homo	0.833	0.045	0.890	1.5e-18
ZFIN|ZDB-GENE-080214-4	1221	zgc:171298 "zgc:171298" [Danio	0.833	0.045	0.890	1.5e-18
MGI|MGI:1924037	1043	Ppfia3 "protein tyrosine phosp	0.833	0.052	0.890	1.6e-18

UNIPROTKB|E1BND7 PPFIA2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 240 (89.5 bits), Expect = 5.3e-19, P = 5.3e-19
 Identities = 50/55 (90%), Positives = 51/55 (92%)

Query:     3 LLLEHLEALVSRHERSLRSTVVKRQAQNQSGVSSEAEVLKALKSLFEHHKALDEK 57
             LLLEHLE LVSRHERSLR TVVKRQAQ+ SGVSSE EVLKALKSLFEHHKALDEK
Sbjct:    35 LLLEHLECLVSRHERSLRMTVVKRQAQSPSGVSSEVEVLKALKSLFEHHKALDEK 89

GO:0045202 "synapse" evidence=IEA

WB|WBGene00006364 syd-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 240 (89.5 bits), Expect = 6.6e-19, P = 6.6e-19
 Identities = 49/55 (89%), Positives = 51/55 (92%)

Query:     3 LLLEHLEALVSRHERSLRSTVVKRQAQNQSGVSSEAEVLKALKSLFEHHKALDEK 57
             LLLEHLE LVSRHERSLR TV+KRQAQN +GVSSE EVLKALKSLFEHHKALDEK
Sbjct:   126 LLLEHLECLVSRHERSLRMTVMKRQAQNHAGVSSEVEVLKALKSLFEHHKALDEK 180

GO:0050808 "synapse organization" evidence=IMP

GO:0050803 "regulation of synapse structure and activity" evidence=IMP

GO:0007274 "neuromuscular synaptic transmission" evidence=IDA

GO:0008104 "protein localization" evidence=IMP

GO:0007626 "locomotory behavior" evidence=IMP

GO:0018991 "oviposition" evidence=IMP

GO:0043113 "receptor clustering" evidence=ISS

GO:0030424 "axon" evidence=IDA

GO:0045202 "synapse" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0048786 "presynaptic active zone" evidence=IDA

GO:0030159 "receptor signaling complex scaffold activity" evidence=IMP

GO:0008088 "axon cargo transport" evidence=IGI

GO:0042803 "protein homodimerization activity" evidence=IPI

RGD|1305021 Ppfia2 "protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2" [Rattus norvegicus (taxid:10116)]

 Score = 240 (89.5 bits), Expect = 6.8e-19, P = 6.8e-19
 Identities = 50/55 (90%), Positives = 51/55 (92%)

Query:     3 LLLEHLEALVSRHERSLRSTVVKRQAQNQSGVSSEAEVLKALKSLFEHHKALDEK 57
             LLLEHLE LVSRHERSLR TVVKRQAQ+ SGVSSE EVLKALKSLFEHHKALDEK
Sbjct:    35 LLLEHLECLVSRHERSLRMTVVKRQAQSPSGVSSEVEVLKALKSLFEHHKALDEK 89

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0045202 "synapse" evidence=ISO

UNIPROTKB|E1C243 PPFIA2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 240 (89.5 bits), Expect = 7.0e-19, P = 7.0e-19
 Identities = 50/55 (90%), Positives = 51/55 (92%)

Query:     3 LLLEHLEALVSRHERSLRSTVVKRQAQNQSGVSSEAEVLKALKSLFEHHKALDEK 57
             LLLEHLE LVSRHERSLR TVVKRQAQ+ SGVSSE EVLKALKSLFEHHKALDEK
Sbjct:    56 LLLEHLECLVSRHERSLRMTVVKRQAQSPSGVSSEVEVLKALKSLFEHHKALDEK 110

GO:0045202 "synapse" evidence=IEA

UNIPROTKB|O75334 PPFIA2 "Liprin-alpha-2" [Homo sapiens (taxid:9606)]

 Score = 240 (89.5 bits), Expect = 7.6e-19, P = 7.6e-19
 Identities = 50/55 (90%), Positives = 51/55 (92%)

Query:     3 LLLEHLEALVSRHERSLRSTVVKRQAQNQSGVSSEAEVLKALKSLFEHHKALDEK 57
             LLLEHLE LVSRHERSLR TVVKRQAQ+ SGVSSE EVLKALKSLFEHHKALDEK
Sbjct:   136 LLLEHLECLVSRHERSLRMTVVKRQAQSPSGVSSEVEVLKALKSLFEHHKALDEK 190

GO:0045202 "synapse" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0007160 "cell-matrix adhesion" evidence=TAS

MGI|MGI:2443834 Ppfia2 "protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2" [Mus musculus (taxid:10090)]

 Score = 240 (89.5 bits), Expect = 7.6e-19, P = 7.6e-19
 Identities = 50/55 (90%), Positives = 51/55 (92%)

Query:     3 LLLEHLEALVSRHERSLRSTVVKRQAQNQSGVSSEAEVLKALKSLFEHHKALDEK 57
             LLLEHLE LVSRHERSLR TVVKRQAQ+ SGVSSE EVLKALKSLFEHHKALDEK
Sbjct:   136 LLLEHLECLVSRHERSLRMTVVKRQAQSPSGVSSEVEVLKALKSLFEHHKALDEK 190

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0045202 "synapse" evidence=IDA

FB|FBgn0046704 Liprin-alpha "Liprin-alpha" [Drosophila melanogaster (taxid:7227)]

 Score = 237 (88.5 bits), Expect = 1.5e-18, P = 1.5e-18
 Identities = 50/55 (90%), Positives = 50/55 (90%)

Query:     3 LLLEHLEALVSRHERSLRSTVVKRQAQNQSGVSSEAEVLKALKSLFEHHKALDEK 57
             LLLEHLE LVSRHERSLR TVVKRQA  QSGVSSE EVLKALKSLFEHHKALDEK
Sbjct:   118 LLLEHLECLVSRHERSLRMTVVKRQAAAQSGVSSEVEVLKALKSLFEHHKALDEK 172

GO:0008594 "photoreceptor cell morphogenesis" evidence=IMP

GO:0045202 "synapse" evidence=IDA

GO:0007416 "synapse assembly" evidence=IMP

GO:0048490 "anterograde synaptic vesicle transport" evidence=IMP

GO:0045467 "R7 cell development" evidence=IMP

GO:0031290 "retinal ganglion cell axon guidance" evidence=IMP

GO:0007412 "axon target recognition" evidence=IMP

GO:0048786 "presynaptic active zone" evidence=IDA

GO:0007411 "axon guidance" evidence=IMP

GO:0048841 "regulation of axon extension involved in axon guidance" evidence=IMP

GO:0048675 "axon extension" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0043234 "protein complex" evidence=IDA

GO:0051124 "synaptic growth at neuromuscular junction" evidence=IMP

GO:0005925 "focal adhesion" evidence=IDA

UNIPROTKB|Q13136 PPFIA1 "Liprin-alpha-1" [Homo sapiens (taxid:9606)]

 Score = 237 (88.5 bits), Expect = 1.5e-18, P = 1.5e-18
 Identities = 49/55 (89%), Positives = 51/55 (92%)

Query:     3 LLLEHLEALVSRHERSLRSTVVKRQAQNQSGVSSEAEVLKALKSLFEHHKALDEK 57
             LLLEHLE LVSRHERSLR TVVKRQAQ+ +GVSSE EVLKALKSLFEHHKALDEK
Sbjct:   123 LLLEHLECLVSRHERSLRMTVVKRQAQSPAGVSSEVEVLKALKSLFEHHKALDEK 177

GO:0005737 "cytoplasm" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0007160 "cell-matrix adhesion" evidence=TAS

ZFIN|ZDB-GENE-080214-4 zgc:171298 "zgc:171298" [Danio rerio (taxid:7955)]

 Score = 237 (88.5 bits), Expect = 1.5e-18, P = 1.5e-18
 Identities = 49/55 (89%), Positives = 51/55 (92%)

Query:     3 LLLEHLEALVSRHERSLRSTVVKRQAQNQSGVSSEAEVLKALKSLFEHHKALDEK 57
             LLLEHLE LVSRHERSLR TVVKRQAQ+ +GVSSE EVLKALKSLFEHHKALDEK
Sbjct:   122 LLLEHLECLVSRHERSLRMTVVKRQAQSPAGVSSEVEVLKALKSLFEHHKALDEK 176

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:1924037 Ppfia3 "protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3" [Mus musculus (taxid:10090)]

 Score = 236 (88.1 bits), Expect = 1.6e-18, P = 1.6e-18
 Identities = 49/55 (89%), Positives = 50/55 (90%)

Query:     3 LLLEHLEALVSRHERSLRSTVVKRQAQNQSGVSSEAEVLKALKSLFEHHKALDEK 57
             LLLEHLE LVSRHERSLR TVVKRQAQ+  GVSSE EVLKALKSLFEHHKALDEK
Sbjct:   115 LLLEHLECLVSRHERSLRMTVVKRQAQSPGGVSSEVEVLKALKSLFEHHKALDEK 169

GO:0003674 "molecular_function" evidence=ND

GO:0005623 "cell" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0007269 "neurotransmitter secretion" evidence=ISO

GO:0048172 "regulation of short-term neuronal synaptic plasticity" evidence=ISO

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8BSS9	LIPA2_MOUSE	No assigned EC number	0.9090	0.8333	0.0437	yes	N/A
Q21049	LIPA_CAEEL	No assigned EC number	0.8909	0.8333	0.0482	yes	N/A
O75334	LIPA2_HUMAN	No assigned EC number	0.9090	0.8333	0.0437	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	66
KOG0249|consensus	916		83.24

>KOG0249|consensus

Probab=83.24  E-value=0.63  Score=40.61  Aligned_cols=32  Identities=3%  Similarity=-0.204  Sum_probs=29.1

Q ss_pred             cCCchHHHHHHHHHHHHHHHhhHHhHhhhhhh
Q psy6459          31 QSGVSSEAEVLKALKSLFEHHKALDEKGKGTA   62 (66)
Q Consensus        31 ~~gvssEvEVLkALksLFeHHKaLDEKv~~~l   62 (66)
                      +.++++|+++.++.+++|+||+++|+++|...
T Consensus         1 ~~~e~qel~~~~~~e~~~~~~q~a~~ttr~~e   32 (916)
T KOG0249|consen    1 MTIELQELLEKQQHEQAQSKEQLAPLTTRVPE   32 (916)
T ss_pred             CccchHHHHHHHHHHHhhcccccCCCcCCcHH
Confidence            35789999999999999999999999998765

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00