Psyllid ID: psy6460

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
MDFNASKSWFCIIGYQPDCLKRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAFYMVGPIEEVVAKAETLAKS
ccccccccEEEEEEcccccccccccccEEEEEEEcccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccHHHHHccccccEEEHHHHHHHHHHHHcccccccHHHHHHHcccHHHHHHHHHHHHHc
ccccccccEEEEEccccccccccccEEEEEEEEcHHHccccHHHHHHHHHccEEEEEcHHHHcccccccEcccccEEccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHccccccccHHHHHHHHHHHHHcccccccHHHHcccccHHHHHHHHHHHccc
mdfnasksWFCIIGyqpdclkrfsiflpaqaiyvpaddltdpapattfahLDATTVLSRAIAELgiypavdpldstsrimdpniigaehyNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFlsqpfqvaevftghagklvpleeTIKGFSEILAgkydhlpevafymVGPIEEVVAKAETLAKS
mdfnasksWFCIIGYQPDCLKRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGiypavdpldstSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAFYMVGPIEEVVAKAETLAKS
MDFNASKSWFCIIGYQPDCLKRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAFYMVGPIEEVVAKAETLAKS
*******SWFCIIGYQPDCLKRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAFYMVGPIEEVVA********
*****SKSWFCIIGYQPDCLKRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAFYMVGPIEEVVAKAETL***
MDFNASKSWFCIIGYQPDCLKRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAFYMVGPIEEVVAKAETLAKS
*****SKSWFCIIGYQPDCLKRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAFYMVGPIEEVVAKAET****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDFNASKSWFCIIGYQPDCLKRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAFYMVGPIEEVVAKAETLAKS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query198 2.2.26 [Sep-21-2011]
Q05825505 ATP synthase subunit beta yes N/A 0.929 0.364 0.843 9e-90
Q5ZLC5533 ATP synthase subunit beta yes N/A 0.934 0.347 0.812 3e-87
P10719529 ATP synthase subunit beta yes N/A 0.929 0.347 0.808 5e-87
P00829528 ATP synthase subunit beta yes N/A 0.929 0.348 0.808 6e-87
P06576529 ATP synthase subunit beta yes N/A 0.929 0.347 0.808 7e-87
P56480529 ATP synthase subunit beta yes N/A 0.929 0.347 0.808 9e-87
Q9PTY0518 ATP synthase subunit beta N/A N/A 0.929 0.355 0.803 4e-85
P46561538 ATP synthase subunit beta yes N/A 0.929 0.342 0.762 1e-80
P38482574 ATP synthase subunit beta N/A N/A 0.848 0.292 0.851 3e-79
Q0QEP2362 ATP synthase subunit beta N/A N/A 0.848 0.464 0.796 2e-78
>sp|Q05825|ATPB_DROME ATP synthase subunit beta, mitochondrial OS=Drosophila melanogaster GN=ATPsyn-beta PE=2 SV=3 Back     alignment and function desciption
 Score =  329 bits (843), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 167/198 (84%), Positives = 172/198 (86%), Gaps = 14/198 (7%)

Query: 13  IGYQPD-------------CLKRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSR 59
           +GYQP                K+ SI    QAIYVPADDLTDPAPATTFAHLDATTVLSR
Sbjct: 306 VGYQPTLATDMGSMQERITTTKKGSI-TSVQAIYVPADDLTDPAPATTFAHLDATTVLSR 364

Query: 60  AIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELS 119
           AIAELGIYPAVDPLDSTSRIMDPNIIG EHYN+ARGVQKILQDYKSLQDIIAILGMDELS
Sbjct: 365 AIAELGIYPAVDPLDSTSRIMDPNIIGQEHYNVARGVQKILQDYKSLQDIIAILGMDELS 424

Query: 120 EEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAF 179
           EEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLE+TIKGFS ILAG YDHLPEVAF
Sbjct: 425 EEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEQTIKGFSAILAGDYDHLPEVAF 484

Query: 180 YMVGPIEEVVAKAETLAK 197
           YMVGPIEEVV KA+ LAK
Sbjct: 485 YMVGPIEEVVEKADRLAK 502
Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 1EC: 4
>sp|Q5ZLC5|ATPB_CHICK ATP synthase subunit beta, mitochondrial OS=Gallus gallus GN=ATP5B PE=1 SV=1 Back     alignment and function description
>sp|P10719|ATPB_RAT ATP synthase subunit beta, mitochondrial OS=Rattus norvegicus GN=Atp5b PE=1 SV=2 Back     alignment and function description
>sp|P00829|ATPB_BOVIN ATP synthase subunit beta, mitochondrial OS=Bos taurus GN=ATP5B PE=1 SV=2 Back     alignment and function description
>sp|P06576|ATPB_HUMAN ATP synthase subunit beta, mitochondrial OS=Homo sapiens GN=ATP5B PE=1 SV=3 Back     alignment and function description
>sp|P56480|ATPB_MOUSE ATP synthase subunit beta, mitochondrial OS=Mus musculus GN=Atp5b PE=1 SV=2 Back     alignment and function description
>sp|Q9PTY0|ATPB_CYPCA ATP synthase subunit beta, mitochondrial OS=Cyprinus carpio GN=atp5b PE=2 SV=1 Back     alignment and function description
>sp|P46561|ATPB_CAEEL ATP synthase subunit beta, mitochondrial OS=Caenorhabditis elegans GN=atp-2 PE=1 SV=2 Back     alignment and function description
>sp|P38482|ATPBM_CHLRE ATP synthase subunit beta, mitochondrial OS=Chlamydomonas reinhardtii GN=ATP2 PE=1 SV=1 Back     alignment and function description
>sp|Q0QEP2|ATPB_MESAU ATP synthase subunit beta, mitochondrial (Fragment) OS=Mesocricetus auratus GN=ATP5B PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query198
427379097 516 ecto-ATPase [Spodoptera litura] 0.934 0.358 0.864 3e-91
357604776 514 H+ transporting ATP synthase beta subuni 0.934 0.359 0.859 3e-91
389610983 514 ATP synthase-beta [Papilio polytes] 0.934 0.359 0.859 4e-91
242023574 550 ATP synthase subunit beta, putative [Ped 0.934 0.336 0.859 4e-91
389610839 522 ATP synthase-beta [Papilio polytes] 0.934 0.354 0.859 4e-91
389608451 514 ATP synthase-beta [Papilio xuthus] 0.934 0.359 0.859 4e-91
114052072 516 H+ transporting ATP synthase beta subuni 0.934 0.358 0.859 5e-91
115345328 513 H+ transporting ATP synthase beta subuni 0.934 0.360 0.859 7e-91
300250972 516 ATP synthase [Helicoverpa zea] 0.934 0.358 0.859 2e-90
389611593 420 ATP synthase-beta, partial [Papilio xuth 0.929 0.438 0.863 2e-90
>gi|427379097|gb|AFY62978.1| ecto-ATPase [Spodoptera litura] Back     alignment and taxonomy information
 Score =  339 bits (870), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 172/199 (86%), Positives = 177/199 (88%), Gaps = 14/199 (7%)

Query: 13  IGYQPD-------------CLKRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSR 59
           +GYQP                K+ SI    QAIYVPADDLTDPAPATTFAHLDATTVLSR
Sbjct: 319 VGYQPTLATDMGTMQERITTTKKGSI-TSVQAIYVPADDLTDPAPATTFAHLDATTVLSR 377

Query: 60  AIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELS 119
           AIAELGIYPAVDPLDSTSRIMDPNIIGAEHYN+ARGVQKILQDYKSLQDIIAILGMDELS
Sbjct: 378 AIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELS 437

Query: 120 EEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAF 179
           EEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFS+IL G+YDHLPEVAF
Sbjct: 438 EEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSKILQGEYDHLPEVAF 497

Query: 180 YMVGPIEEVVAKAETLAKS 198
           YMVGPIEEVVAKAETLAKS
Sbjct: 498 YMVGPIEEVVAKAETLAKS 516

Source: Spodoptera litura

Species: Spodoptera litura

Genus: Spodoptera

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|357604776|gb|EHJ64315.1| H+ transporting ATP synthase beta subunit isoform 2 [Danaus plexippus] Back     alignment and taxonomy information
>gi|389610983|dbj|BAM19102.1| ATP synthase-beta [Papilio polytes] Back     alignment and taxonomy information
>gi|242023574|ref|XP_002432207.1| ATP synthase subunit beta, putative [Pediculus humanus corporis] gi|212517604|gb|EEB19469.1| ATP synthase subunit beta, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|389610839|dbj|BAM19030.1| ATP synthase-beta [Papilio polytes] Back     alignment and taxonomy information
>gi|389608451|dbj|BAM17835.1| ATP synthase-beta [Papilio xuthus] Back     alignment and taxonomy information
>gi|114052072|ref|NP_001040450.1| H+ transporting ATP synthase beta subunit isoform 1 [Bombyx mori] gi|95102938|gb|ABF51410.1| H+ transporting ATP synthase beta subunit isoform 1 [Bombyx mori] Back     alignment and taxonomy information
>gi|115345328|ref|NP_001041705.1| H+ transporting ATP synthase beta subunit isoform 2 [Bombyx mori] gi|95102940|gb|ABF51411.1| H+ transporting ATP synthase beta subunit isoform 2 [Bombyx mori] Back     alignment and taxonomy information
>gi|300250972|gb|ADJ95799.1| ATP synthase [Helicoverpa zea] Back     alignment and taxonomy information
>gi|389611593|dbj|BAM19394.1| ATP synthase-beta, partial [Papilio xuthus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query198
FB|FBgn0010217505 ATPsyn-beta "ATP synthase-beta 0.888 0.348 0.920 1.8e-80
UNIPROTKB|Q5ZLC5533 ATP5B "ATP synthase subunit be 0.848 0.315 0.922 1.4e-78
UNIPROTKB|P00829528 ATP5B "ATP synthase subunit be 0.888 0.333 0.881 3e-78
UNIPROTKB|F8VPV9518 ATP5B "ATP synthase subunit be 0.888 0.339 0.881 3e-78
UNIPROTKB|P06576529 ATP5B "ATP synthase subunit be 0.888 0.332 0.881 3e-78
UNIPROTKB|F1SLA0528 ATP5B "ATP synthase subunit be 0.888 0.333 0.881 3e-78
UNIPROTKB|K7GLT8463 ATP5B "ATP synthase subunit be 0.888 0.380 0.881 3e-78
RGD|621368529 Atp5b "ATP synthase, H+ transp 0.888 0.332 0.881 4.8e-78
UNIPROTKB|G3V6D3529 Atp5b "ATP synthase subunit be 0.888 0.332 0.881 4.8e-78
UNIPROTKB|F1PDB4527 ATP5B "ATP synthase subunit be 0.888 0.333 0.881 6.2e-78
FB|FBgn0010217 ATPsyn-beta "ATP synthase-beta" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 808 (289.5 bits), Expect = 1.8e-80, P = 1.8e-80
 Identities = 163/177 (92%), Positives = 167/177 (94%)

Query:    21 KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIM 80
             K+ SI    QAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIM
Sbjct:   327 KKGSI-TSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIM 385

Query:    81 DPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPF 140
             DPNIIG EHYN+ARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPF
Sbjct:   386 DPNIIGQEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPF 445

Query:   141 QVAEVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAFYMVGPIEEVVAKAETLAK 197
             QVAEVFTGHAGKLVPLE+TIKGFS ILAG YDHLPEVAFYMVGPIEEVV KA+ LAK
Sbjct:   446 QVAEVFTGHAGKLVPLEQTIKGFSAILAGDYDHLPEVAFYMVGPIEEVVEKADRLAK 502
GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=ISS
GO:0015992 "proton transport" evidence=ISS;NAS
GO:0000275 "mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)" evidence=ISS
GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA
GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA
GO:0005739 "mitochondrion" evidence=IDA
GO:0005811 "lipid particle" evidence=IDA
GO:0046331 "lateral inhibition" evidence=IMP
UNIPROTKB|Q5ZLC5 ATP5B "ATP synthase subunit beta, mitochondrial" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P00829 ATP5B "ATP synthase subunit beta, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F8VPV9 ATP5B "ATP synthase subunit beta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P06576 ATP5B "ATP synthase subunit beta, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SLA0 ATP5B "ATP synthase subunit beta" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|K7GLT8 ATP5B "ATP synthase subunit beta" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|621368 Atp5b "ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G3V6D3 Atp5b "ATP synthase subunit beta" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1PDB4 ATP5B "ATP synthase subunit beta" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8KAC9ATPB2_CHLTE3, ., 6, ., 3, ., 1, 40.70400.91910.3939yesN/A
A8FJR2ATPB_CAMJ83, ., 6, ., 3, ., 1, 40.69740.92420.3935yesN/A
Q7P095ATPB_CHRVO3, ., 6, ., 3, ., 1, 40.80120.83830.3569yesN/A
P10719ATPB_RAT3, ., 6, ., 3, ., 1, 40.80800.92920.3478yesN/A
Q1RKD7ATPB_RICBR3, ., 6, ., 3, ., 1, 40.71420.91910.3847yesN/A
A8LJR4ATPB2_DINSH3, ., 6, ., 3, ., 1, 40.80230.84340.3523yesN/A
Q28TJ6ATPB_JANSC3, ., 6, ., 3, ., 1, 40.72080.92420.3860yesN/A
B3EA01ATPB_GEOLS3, ., 6, ., 3, ., 1, 40.71570.92420.3885yesN/A
P00829ATPB_BOVIN3, ., 6, ., 3, ., 1, 40.80800.92920.3484yesN/A
A8HS10ATPB_AZOC53, ., 6, ., 3, ., 1, 40.79040.84340.3493yesN/A
Q4FP38ATPB_PELUB3, ., 6, ., 3, ., 1, 40.74110.93430.3919yesN/A
A1AP52ATPB2_PELPD3, ., 6, ., 3, ., 1, 40.74110.92420.3885yesN/A
Q01859ATPBM_ORYSJ3, ., 6, ., 3, ., 1, 40.70200.92920.3333yesN/A
Q05825ATPB_DROME3, ., 6, ., 3, ., 1, 40.84340.92920.3643yesN/A
Q5LNP1ATPB_RUEPO3, ., 6, ., 3, ., 1, 40.80230.84340.3523yesN/A
A3PIB9ATPB1_RHOS13, ., 6, ., 3, ., 1, 40.80830.84340.3515yesN/A
Q0PC30ATPB_CAMJE3, ., 6, ., 3, ., 1, 40.69740.92420.3935yesN/A
A1ALL7ATPB1_PELPD3, ., 6, ., 3, ., 1, 40.73600.92420.3885yesN/A
Q9C5A9ATPBO_ARATH3, ., 6, ., 3, ., 1, 40.70700.92920.3291yesN/A
P83483ATPBM_ARATH3, ., 6, ., 3, ., 1, 40.70700.92920.3309yesN/A
P46561ATPB_CAEEL3, ., 6, ., 3, ., 1, 40.76260.92920.3420yesN/A
Q11DD5ATPB_MESSB3, ., 6, ., 3, ., 1, 40.79640.84340.3217yesN/A
P83484ATPBN_ARATH3, ., 6, ., 3, ., 1, 40.70700.92920.3309yesN/A
P43395ATPBM_ACTDE3, ., 6, ., 3, ., 1, 40.79160.84840.9710N/AN/A
B5EFI7ATPB_GEOBB3, ., 6, ., 3, ., 1, 40.80830.84340.3553yesN/A
Q3J431ATPB1_RHOS43, ., 6, ., 3, ., 1, 40.80830.84340.3515yesN/A
A1VXJ0ATPB_CAMJJ3, ., 6, ., 3, ., 1, 40.69740.92420.3935yesN/A
Q5ZLC5ATPB_CHICK3, ., 6, ., 3, ., 1, 40.81210.93430.3470yesN/A
P56480ATPB_MOUSE3, ., 6, ., 3, ., 1, 40.80800.92920.3478yesN/A
Q5HX59ATPB_CAMJR3, ., 6, ., 3, ., 1, 40.69740.92420.3935yesN/A
B3EDQ7ATPB_CHLL23, ., 6, ., 3, ., 1, 40.80720.83830.3593yesN/A
A9H9A8ATPB_GLUDA3, ., 6, ., 3, ., 1, 40.68840.93430.3752yesN/A
Q162S9ATPB_ROSDO3, ., 6, ., 3, ., 1, 40.82030.84340.3523yesN/A
A1B8P0ATPB_PARDP3, ., 6, ., 3, ., 1, 40.80830.84340.3523yesN/A
B0THN2ATPB_HELMI3, ., 6, ., 3, ., 1, 40.81430.84340.3545yesN/A
P06576ATPB_HUMAN3, ., 6, ., 3, ., 1, 40.80800.92920.3478yesN/A
A1BCJ2ATPB_CHLPD3, ., 6, ., 3, ., 1, 40.70400.91910.3939yesN/A
C6E9F1ATPB_GEOSM3, ., 6, ., 3, ., 1, 40.80830.84340.3553yesN/A
Q2RFX9ATPB_MOOTA3, ., 6, ., 3, ., 1, 40.70910.91910.3939yesN/A
Q1GEU8ATPB_RUEST3, ., 6, ., 3, ., 1, 40.79040.84340.3523yesN/A
A7H1I1ATPB_CAMJD3, ., 6, ., 3, ., 1, 40.70760.92420.3780yesN/A
A5FZ54ATPB_ACICJ3, ., 6, ., 3, ., 1, 40.69890.91910.3823yesN/A
A4WUM7ATPB_RHOS53, ., 6, ., 3, ., 1, 40.81430.84340.3515yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query198
PRK09280463 PRK09280, PRK09280, F0F1 ATP synthase subunit beta 1e-133
COG0055468 COG0055, AtpD, F0F1-type ATP synthase, beta subuni 1e-120
TIGR01039461 TIGR01039, atpD, ATP synthase, F1 beta subunit 1e-112
CHL00060494 CHL00060, atpB, ATP synthase CF1 beta subunit 1e-106
PRK12597461 PRK12597, PRK12597, F0F1 ATP synthase subunit beta 2e-94
TIGR03305449 TIGR03305, alt_F1F0_F1_bet, alternate F1F0 ATPase, 1e-65
cd01133274 cd01133, F1-ATPase_beta, F1 ATP synthase beta subu 5e-37
pfam00306110 pfam00306, ATP-synt_ab_C, ATP synthase alpha/beta 2e-35
COG1157441 COG1157, FliI, Flagellar biosynthesis/type III sec 5e-20
TIGR01026440 TIGR01026, fliI_yscN, ATPase FliI/YscN family 7e-19
TIGR03496411 TIGR03496, FliI_clade1, flagellar protein export A 1e-16
cd01136326 cd01136, ATPase_flagellum-secretory_path_III, Flag 4e-16
TIGR02546422 TIGR02546, III_secr_ATP, type III secretion appara 1e-15
TIGR03497413 TIGR03497, FliI_clade2, flagellar protein export A 2e-14
PRK08472434 PRK08472, fliI, flagellum-specific ATP synthase; V 8e-14
TIGR03498418 TIGR03498, FliI_clade3, flagellar protein export A 5e-13
pfam00006213 pfam00006, ATP-synt_ab, ATP synthase alpha/beta fa 6e-13
PRK07196434 PRK07196, fliI, flagellum-specific ATP synthase; V 7e-13
PRK08972444 PRK08972, fliI, flagellum-specific ATP synthase; V 1e-12
PRK05688451 PRK05688, fliI, flagellum-specific ATP synthase; V 2e-12
PRK06936439 PRK06936, PRK06936, type III secretion system ATPa 1e-11
COG1156463 COG1156, NtpB, Archaeal/vacuolar-type H+-ATPase su 1e-11
PRK07721438 PRK07721, fliI, flagellum-specific ATP synthase; V 8e-11
PRK06820440 PRK06820, PRK06820, type III secretion system ATPa 1e-10
PRK06793432 PRK06793, fliI, flagellum-specific ATP synthase; V 1e-10
TIGR01041458 TIGR01041, ATP_syn_B_arch, ATP synthase archaeal, 1e-09
PRK04196460 PRK04196, PRK04196, V-type ATP synthase subunit B; 3e-09
PRK07594433 PRK07594, PRK07594, type III secretion system ATPa 3e-09
PRK09099441 PRK09099, PRK09099, type III secretion system ATPa 7e-09
PRK07960455 PRK07960, fliI, flagellum-specific ATP synthase; V 9e-09
PRK06315442 PRK06315, PRK06315, type III secretion system ATPa 7e-08
PRK06002450 PRK06002, fliI, flagellum-specific ATP synthase; V 1e-07
PRK08927442 PRK08927, fliI, flagellum-specific ATP synthase; V 2e-06
COG1155588 COG1155, NtpA, Archaeal/vacuolar-type H+-ATPase su 1e-05
PRK04192586 PRK04192, PRK04192, V-type ATP synthase subunit A; 2e-05
TIGR01042591 TIGR01042, V-ATPase_V1_A, V-type (H+)-ATPase V1, A 2e-04
PRK08149428 PRK08149, PRK08149, ATP synthase SpaL; Validated 2e-04
TIGR01040466 TIGR01040, V-ATPase_V1_B, V-type (H+)-ATPase V1, B 9e-04
cd01135276 cd01135, V_A-ATPase_B, V/A-type ATP synthase (non- 0.003
>gnl|CDD|236447 PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated Back     alignment and domain information 
 Score =  381 bits (982), Expect = e-133
 Identities = 137/167 (82%), Positives = 149/167 (89%)

Query: 30  QAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEH 89
           QA+YVPADDLTDPAPATTFAHLDATTVLSR IAELGIYPAVDPLDSTSRI+DP I+G EH
Sbjct: 297 QAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRILDPLIVGEEH 356

Query: 90  YNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGH 149
           Y++AR VQ+ILQ YK LQDIIAILGMDELSEEDKLTVARARKIQRFLSQPF VAE FTG 
Sbjct: 357 YDVAREVQQILQRYKELQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFFVAEQFTGS 416

Query: 150 AGKLVPLEETIKGFSEILAGKYDHLPEVAFYMVGPIEEVVAKAETLA 196
            GK VPL++TI+GF EIL G+YDHLPE AFYMVG IEE + KA+ LA
Sbjct: 417 PGKYVPLKDTIRGFKEILEGEYDHLPEQAFYMVGTIEEAIEKAKKLA 463

Length = 463
>gnl|CDD|223133 COG0055, AtpD, F0F1-type ATP synthase, beta subunit [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|211621 TIGR01039, atpD, ATP synthase, F1 beta subunit Back     alignment and domain information
>gnl|CDD|214349 CHL00060, atpB, ATP synthase CF1 beta subunit Back     alignment and domain information
>gnl|CDD|183615 PRK12597, PRK12597, F0F1 ATP synthase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|132348 TIGR03305, alt_F1F0_F1_bet, alternate F1F0 ATPase, F1 subunit beta Back     alignment and domain information
>gnl|CDD|238553 cd01133, F1-ATPase_beta, F1 ATP synthase beta subunit, nucleotide-binding domain Back     alignment and domain information
>gnl|CDD|215848 pfam00306, ATP-synt_ab_C, ATP synthase alpha/beta chain, C terminal domain Back     alignment and domain information
>gnl|CDD|224079 COG1157, FliI, Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|233237 TIGR01026, fliI_yscN, ATPase FliI/YscN family Back     alignment and domain information
>gnl|CDD|213817 TIGR03496, FliI_clade1, flagellar protein export ATPase FliI Back     alignment and domain information
>gnl|CDD|238556 cd01136, ATPase_flagellum-secretory_path_III, Flagellum-specific ATPase/type III secretory pathway virulence-related protein Back     alignment and domain information
>gnl|CDD|233918 TIGR02546, III_secr_ATP, type III secretion apparatus H+-transporting two-sector ATPase Back     alignment and domain information
>gnl|CDD|211826 TIGR03497, FliI_clade2, flagellar protein export ATPase FliI Back     alignment and domain information
>gnl|CDD|181439 PRK08472, fliI, flagellum-specific ATP synthase; Validated Back     alignment and domain information
>gnl|CDD|163293 TIGR03498, FliI_clade3, flagellar protein export ATPase FliI Back     alignment and domain information
>gnl|CDD|215651 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family, nucleotide-binding domain Back     alignment and domain information
>gnl|CDD|180875 PRK07196, fliI, flagellum-specific ATP synthase; Validated Back     alignment and domain information
>gnl|CDD|181599 PRK08972, fliI, flagellum-specific ATP synthase; Validated Back     alignment and domain information
>gnl|CDD|168181 PRK05688, fliI, flagellum-specific ATP synthase; Validated Back     alignment and domain information
>gnl|CDD|180762 PRK06936, PRK06936, type III secretion system ATPase; Provisional Back     alignment and domain information
>gnl|CDD|224078 COG1156, NtpB, Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|181092 PRK07721, fliI, flagellum-specific ATP synthase; Validated Back     alignment and domain information
>gnl|CDD|180712 PRK06820, PRK06820, type III secretion system ATPase; Validated Back     alignment and domain information
>gnl|CDD|180696 PRK06793, fliI, flagellum-specific ATP synthase; Validated Back     alignment and domain information
>gnl|CDD|200071 TIGR01041, ATP_syn_B_arch, ATP synthase archaeal, B subunit Back     alignment and domain information
>gnl|CDD|235251 PRK04196, PRK04196, V-type ATP synthase subunit B; Provisional Back     alignment and domain information
>gnl|CDD|136438 PRK07594, PRK07594, type III secretion system ATPase SsaN; Validated Back     alignment and domain information
>gnl|CDD|169656 PRK09099, PRK09099, type III secretion system ATPase; Provisional Back     alignment and domain information
>gnl|CDD|181182 PRK07960, fliI, flagellum-specific ATP synthase; Validated Back     alignment and domain information
>gnl|CDD|180526 PRK06315, PRK06315, type III secretion system ATPase; Provisional Back     alignment and domain information
>gnl|CDD|235666 PRK06002, fliI, flagellum-specific ATP synthase; Validated Back     alignment and domain information
>gnl|CDD|236351 PRK08927, fliI, flagellum-specific ATP synthase; Validated Back     alignment and domain information
>gnl|CDD|224077 COG1155, NtpA, Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|235248 PRK04192, PRK04192, V-type ATP synthase subunit A; Provisional Back     alignment and domain information
>gnl|CDD|233245 TIGR01042, V-ATPase_V1_A, V-type (H+)-ATPase V1, A subunit Back     alignment and domain information
>gnl|CDD|236166 PRK08149, PRK08149, ATP synthase SpaL; Validated Back     alignment and domain information
>gnl|CDD|233244 TIGR01040, V-ATPase_V1_B, V-type (H+)-ATPase V1, B subunit Back     alignment and domain information
>gnl|CDD|238555 cd01135, V_A-ATPase_B, V/A-type ATP synthase (non-catalytic) subunit B Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 198
PRK09280463 F0F1 ATP synthase subunit beta; Validated 100.0
TIGR01039461 atpD ATP synthase, F1 beta subunit. The sequences 100.0
PRK12597461 F0F1 ATP synthase subunit beta; Provisional 100.0
CHL00060494 atpB ATP synthase CF1 beta subunit 100.0
TIGR03305449 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit 100.0
COG0055468 AtpD F0F1-type ATP synthase, beta subunit [Energy 100.0
KOG1350|consensus521 100.0
COG1157441 FliI Flagellar biosynthesis/type III secretory pat 100.0
PRK06936439 type III secretion system ATPase; Provisional 100.0
PRK08472434 fliI flagellum-specific ATP synthase; Validated 100.0
PRK05688451 fliI flagellum-specific ATP synthase; Validated 100.0
PRK07594433 type III secretion system ATPase SsaN; Validated 100.0
PRK07196434 fliI flagellum-specific ATP synthase; Validated 100.0
TIGR03498418 FliI_clade3 flagellar protein export ATPase FliI. 100.0
PRK06820440 type III secretion system ATPase; Validated 100.0
PRK08927442 fliI flagellum-specific ATP synthase; Validated 100.0
PRK08972444 fliI flagellum-specific ATP synthase; Validated 100.0
PRK09099441 type III secretion system ATPase; Provisional 100.0
PRK08149428 ATP synthase SpaL; Validated 100.0
TIGR03324497 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit a 100.0
TIGR03497413 FliI_clade2 flagellar protein export ATPase FliI. 100.0
PRK13343502 F0F1 ATP synthase subunit alpha; Provisional 100.0
TIGR02546422 III_secr_ATP type III secretion apparatus H+-trans 100.0
PRK07960455 fliI flagellum-specific ATP synthase; Validated 100.0
PRK06002450 fliI flagellum-specific ATP synthase; Validated 100.0
PRK09281502 F0F1 ATP synthase subunit alpha; Validated 100.0
TIGR03496411 FliI_clade1 flagellar protein export ATPase FliI. 100.0
TIGR01042591 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. Th 100.0
TIGR01043578 ATP_syn_A_arch ATP synthase archaeal, A subunit. A 100.0
TIGR01041458 ATP_syn_B_arch ATP synthase archaeal, B subunit. A 100.0
TIGR00962501 atpA proton translocating ATP synthase, F1 alpha s 100.0
PRK06315442 type III secretion system ATPase; Provisional 100.0
PRK04196460 V-type ATP synthase subunit B; Provisional 100.0
PRK04192586 V-type ATP synthase subunit A; Provisional 100.0
CHL00059485 atpA ATP synthase CF1 alpha subunit 100.0
TIGR01040466 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. Th 100.0
PRK05922434 type III secretion system ATPase; Validated 100.0
TIGR01026440 fliI_yscN ATPase FliI/YscN family. This family of 100.0
PRK07165507 F0F1 ATP synthase subunit alpha; Validated 100.0
PRK06793432 fliI flagellum-specific ATP synthase; Validated 100.0
cd01136326 ATPase_flagellum-secretory_path_III Flagellum-spec 100.0
PRK146981017 V-type ATP synthase subunit A; Provisional 100.0
PRK07721438 fliI flagellum-specific ATP synthase; Validated 100.0
PTZ00185574 ATPase alpha subunit; Provisional 100.0
PRK02118436 V-type ATP synthase subunit B; Provisional 100.0
COG1156463 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [E 100.0
COG0056504 AtpA F0F1-type ATP synthase, alpha subunit [Energy 99.97
KOG1352|consensus618 99.97
COG1155588 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [E 99.97
PRK12608380 transcription termination factor Rho; Provisional 99.96
cd01133274 F1-ATPase_beta F1 ATP synthase beta subunit, nucle 99.96
cd01132274 F1_ATPase_alpha F1 ATP synthase alpha, central dom 99.96
cd01135276 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) 99.96
TIGR00767415 rho transcription termination factor Rho. Members 99.95
KOG1351|consensus489 99.95
PRK09376416 rho transcription termination factor Rho; Provisio 99.94
cd01134369 V_A-ATPase_A V/A-type ATP synthase catalytic subun 99.94
PRK12678672 transcription termination factor Rho; Provisional 99.93
PF00006215 ATP-synt_ab: ATP synthase alpha/beta family, nucle 99.92
cd01128249 rho_factor Transcription termination factor rho is 99.91
PF00306113 ATP-synt_ab_C: ATP synthase alpha/beta chain, C te 99.48
KOG1353|consensus340 99.42
COG1158422 Rho Transcription termination factor [Transcriptio 99.28
COG1155588 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [E 82.28
>PRK09280 F0F1 ATP synthase subunit beta; Validated Back     alignment and domain information 
Probab=100.00  E-value=6.4e-59  Score=429.87  Aligned_cols=191  Identities=75%  Similarity=1.096  Sum_probs=186.1

Q ss_pred             cccCCCCccCCCCCCCC-------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCCcc
Q psy6460           4 NASKSWFCIIGYQPDCL-------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV   70 (198)
Q Consensus         4 ~~l~~~P~~~GYp~~vf-------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPAI   70 (198)
                      .++||||+++|||||||             ++||| |+||||++||||++|||+|++++|+||||+|||+||++||||||
T Consensus       259 l~~gepP~~~GYPpsvfs~l~~L~ERag~~~~GSI-Tai~tVl~~gdD~~dPI~d~~~silDGhIvLsr~La~~g~yPAI  337 (463)
T PRK09280        259 ALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSI-TSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAV  337 (463)
T ss_pred             HhcCCCCcccCcCchHHHHHHHHHHHhcCCCCCce-eEEEEEECcCCCCCCcchHhhhhhcceEEEEcHHHHhCCCCCcc
Confidence            47899999999999999             67999 99999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCCCccchhhcCCC
Q psy6460          71 DPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHA  150 (198)
Q Consensus        71 D~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~~fL~Q~~~~~d~ft~~~  150 (198)
                      ||+.|+||+|++.+++++|+++++++|++|++|+++++++++||+++++|.++++|++++.|++||+|+++++++||+.+
T Consensus       338 Dvl~S~SR~~~~~~~~~~~~~~a~~~r~~la~y~e~e~li~i~gy~~~sd~~d~ai~~~~~i~~fL~Q~~~~~~~ft~~~  417 (463)
T PRK09280        338 DPLDSTSRILDPLIVGEEHYDVAREVQQILQRYKELQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFFVAEQFTGSP  417 (463)
T ss_pred             CCccccccccccccCCHHHHHHHHHHHHHHHHhHHHHHHHHhhCCccCCHHHHHHHHhhHHHHHhccCCcchhhcccCCC
Confidence            99999999996688999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCHHHHHHHHHHHHhCcCCCCccchhccccChHHHHHHHHHh
Q psy6460         151 GKLVPLEETIKGFSEILAGKYDHLPEVAFYMVGPIEEVVAKAETL  195 (198)
Q Consensus       151 ~~~~~l~etl~~l~~i~~g~~d~ip~~~~~~~g~~~~~~~~~~~~  195 (198)
                      ++.+++++++..|.+|++|++|++||.+|||+|+++|+.+|++++
T Consensus       418 ~~~~~~~~~~~~l~~i~~g~~~~~~~~~~~~~g~~~~~~~~~~~~  462 (463)
T PRK09280        418 GKYVPLKDTIRGFKEILEGEYDHLPEQAFYMVGTIEEAIEKAKKL  462 (463)
T ss_pred             CcccCHHHHHHHHHHHhCCCccCCCHHHHhccCCHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999998765

>TIGR01039 atpD ATP synthase, F1 beta subunit Back     alignment and domain information
>PRK12597 F0F1 ATP synthase subunit beta; Provisional Back     alignment and domain information
>CHL00060 atpB ATP synthase CF1 beta subunit Back     alignment and domain information
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta Back     alignment and domain information
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion] Back     alignment and domain information
>KOG1350|consensus Back     alignment and domain information
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK06936 type III secretion system ATPase; Provisional Back     alignment and domain information
>PRK08472 fliI flagellum-specific ATP synthase; Validated Back     alignment and domain information
>PRK05688 fliI flagellum-specific ATP synthase; Validated Back     alignment and domain information
>PRK07594 type III secretion system ATPase SsaN; Validated Back     alignment and domain information
>PRK07196 fliI flagellum-specific ATP synthase; Validated Back     alignment and domain information
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI Back     alignment and domain information
>PRK06820 type III secretion system ATPase; Validated Back     alignment and domain information
>PRK08927 fliI flagellum-specific ATP synthase; Validated Back     alignment and domain information
>PRK08972 fliI flagellum-specific ATP synthase; Validated Back     alignment and domain information
>PRK09099 type III secretion system ATPase; Provisional Back     alignment and domain information
>PRK08149 ATP synthase SpaL; Validated Back     alignment and domain information
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha Back     alignment and domain information
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI Back     alignment and domain information
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional Back     alignment and domain information
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase Back     alignment and domain information
>PRK07960 fliI flagellum-specific ATP synthase; Validated Back     alignment and domain information
>PRK06002 fliI flagellum-specific ATP synthase; Validated Back     alignment and domain information
>PRK09281 F0F1 ATP synthase subunit alpha; Validated Back     alignment and domain information
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI Back     alignment and domain information
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit Back     alignment and domain information
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit Back     alignment and domain information
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit Back     alignment and domain information
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit Back     alignment and domain information
>PRK06315 type III secretion system ATPase; Provisional Back     alignment and domain information
>PRK04196 V-type ATP synthase subunit B; Provisional Back     alignment and domain information
>PRK04192 V-type ATP synthase subunit A; Provisional Back     alignment and domain information
>CHL00059 atpA ATP synthase CF1 alpha subunit Back     alignment and domain information
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit Back     alignment and domain information
>PRK05922 type III secretion system ATPase; Validated Back     alignment and domain information
>TIGR01026 fliI_yscN ATPase FliI/YscN family Back     alignment and domain information
>PRK07165 F0F1 ATP synthase subunit alpha; Validated Back     alignment and domain information
>PRK06793 fliI flagellum-specific ATP synthase; Validated Back     alignment and domain information
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein Back     alignment and domain information
>PRK14698 V-type ATP synthase subunit A; Provisional Back     alignment and domain information
>PRK07721 fliI flagellum-specific ATP synthase; Validated Back     alignment and domain information
>PTZ00185 ATPase alpha subunit; Provisional Back     alignment and domain information
>PRK02118 V-type ATP synthase subunit B; Provisional Back     alignment and domain information
>COG1156 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion] Back     alignment and domain information
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion] Back     alignment and domain information
>KOG1352|consensus Back     alignment and domain information
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion] Back     alignment and domain information
>PRK12608 transcription termination factor Rho; Provisional Back     alignment and domain information
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain Back     alignment and domain information
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain Back     alignment and domain information
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B Back     alignment and domain information
>TIGR00767 rho transcription termination factor Rho Back     alignment and domain information
>KOG1351|consensus Back     alignment and domain information
>PRK09376 rho transcription termination factor Rho; Provisional Back     alignment and domain information
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A Back     alignment and domain information
>PRK12678 transcription termination factor Rho; Provisional Back     alignment and domain information
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase Back     alignment and domain information
>PF00306 ATP-synt_ab_C: ATP synthase alpha/beta chain, C terminal domain; InterPro: IPR000793 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG1353|consensus Back     alignment and domain information
>COG1158 Rho Transcription termination factor [Transcription] Back     alignment and domain information
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query198
1cow_D482 Bovine Mitochondrial F1-Atpase Complexed With Aurov 4e-88
2xnd_D467 Crystal Structure Of Bovine F1-C8 Sub-Complex Of At 5e-88
1nbm_D480 The Structure Of Bovine F1-Atpase Covalently Inhibi 5e-88
2w6e_D528 Low Resolution Structures Of Bovine Mitochondrial F 5e-88
4asu_D480 F1-Atpase In Which All Three Catalytic Sites Contai 5e-88
1mab_B479 Rat Liver F1-Atpase Length = 479 7e-88
1nbm_E480 The Structure Of Bovine F1-Atpase Covalently Inhibi 4e-87
3oaa_D459 Structure Of The E.Coli F1-Atp Synthase Inhibited B 9e-72
4b2q_D470 Model Of The Yeast F1fo-Atp Synthase Dimer Based On 3e-71
2qe7_D462 Crystal Structure Of The F1-Atpase From The Thermoa 9e-70
3fks_D484 Yeast F1 Atpase In The Absence Of Bound Nucleotides 2e-68
2hld_D478 Crystal Structure Of Yeast Mitochondrial F1-Atpase 2e-68
4b2q_E473 Model Of The Yeast F1fo-Atp Synthase Dimer Based On 3e-68
2xok_D511 Refined Structure Of Yeast F1c10 Atpase Complex To 3e-68
3oeh_D484 Structure Of Four Mutant Forms Of Yeast F1 Atpase: 5e-68
1fx0_B498 Crystal Structure Of The Chloroplast F1-Atpase From 3e-66
1sky_E473 Crystal Structure Of The Nucleotide Free Alpha3beta 4e-64
3a5c_D478 Inter-Subunit Interaction And Quaternary Rearrangem 2e-08
3gqb_B464 Crystal Structure Of The A3b3 Complex From V-atpase 3e-08
2obl_A347 Structural And Biochemical Analysis Of A Prototypic 2e-06
2dpy_A438 Crystal Structure Of The Flagellar Type Iii Atpase 2e-06
2rkw_A469 Intermediate Position Of Atp On Its Trail To The Bi 4e-06
3tgw_A460 Crystal Structure Of Subunit B Mutant H156a Of The 4e-06
3tiv_A460 Crystal Structure Of Subunit B Mutant N157a Of The 4e-06
2c61_A469 Crystal Structure Of The Non-Catalytic B Subunit Of 4e-06
3ssa_A460 Crystal Structure Of Subunit B Mutant N157t Of The 4e-06
3vr6_A600 Crystal Structure Of Amp-pnp Bound Enterococcus Hir 2e-04
3vr6_D465 Crystal Structure Of Amp-pnp Bound Enterococcus Hir 3e-04
3vr2_D465 Crystal Structure Of Nucleotide-free A3b3 Complex F 6e-04
>pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B Length = 482 Back     alignment and structure 
Iteration: 1

 Score =  320 bits (819), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 160/198 (80%), Positives = 172/198 (86%), Gaps = 14/198 (7%)
Query: 13  IGYQPD-------------CLKRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSR 59
           +GYQP                K+ SI    QAIYVPADDLTDPAPATTFAHLDATTVLSR
Sbjct: 283 VGYQPTLATDMGTMQERITTTKKGSI-TSVQAIYVPADDLTDPAPATTFAHLDATTVLSR 341
Query: 60  AIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELS 119
           AIAELGIYPAVDPLDSTSRIMDPNI+G+EHY++ARGVQKILQDYKSLQDIIAILGMDELS
Sbjct: 342 AIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELS 401
Query: 120 EEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAF 179
           EEDKLTV+RARKIQRFLSQPFQVAEVFTGH GKLVPL+ETIKGF +ILAG+YDHLPE AF
Sbjct: 402 EEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAF 461
Query: 180 YMVGPIEEVVAKAETLAK 197
           YMVGPIEE VAKA+ LA+
Sbjct: 462 YMVGPIEEAVAKADKLAE 479
>pdb|2XND|D Chain D, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp Synthase Length = 467 Back     alignment and structure
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited With 4-Chloro-7-Nitrobenzofurazan Length = 480 Back     alignment and structure
>pdb|2W6E|D Chain D, Low Resolution Structures Of Bovine Mitochondrial F1-Atpase During Controlled Dehydration: Hydration State 1. Length = 528 Back     alignment and structure
>pdb|4ASU|D Chain D, F1-Atpase In Which All Three Catalytic Sites Contain Bound Nucleotide, With Magnesium Ion Released In The Empty Site Length = 480 Back     alignment and structure
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase Length = 479 Back     alignment and structure
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited With 4-Chloro-7-Nitrobenzofurazan Length = 480 Back     alignment and structure
>pdb|3OAA|D Chain D, Structure Of The E.Coli F1-Atp Synthase Inhibited By Subunit Epsilon Length = 459 Back     alignment and structure
>pdb|4B2Q|D Chain D, Model Of The Yeast F1fo-Atp Synthase Dimer Based On Subtomogram Average Length = 470 Back     alignment and structure
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1 Length = 462 Back     alignment and structure
>pdb|3FKS|D Chain D, Yeast F1 Atpase In The Absence Of Bound Nucleotides Length = 484 Back     alignment and structure
>pdb|2HLD|D Chain D, Crystal Structure Of Yeast Mitochondrial F1-Atpase Length = 478 Back     alignment and structure
>pdb|4B2Q|E Chain E, Model Of The Yeast F1fo-Atp Synthase Dimer Based On Subtomogram Average Length = 473 Back     alignment and structure
>pdb|2XOK|D Chain D, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A Resolution Length = 511 Back     alignment and structure
>pdb|3OEH|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase: Beta-V279f Length = 484 Back     alignment and structure
>pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1-Atpase From Spinach Length = 498 Back     alignment and structure
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3 Sub-Complex Of F1-Atpase From The Thermophilic Bacillus Ps3 Length = 473 Back     alignment and structure
>pdb|3A5C|D Chain D, Inter-Subunit Interaction And Quaternary Rearrangement Defined By The Central Stalk Of Prokaryotic V1-Atpase Length = 478 Back     alignment and structure
>pdb|3GQB|B Chain B, Crystal Structure Of The A3b3 Complex From V-atpase Length = 464 Back     alignment and structure
>pdb|2OBL|A Chain A, Structural And Biochemical Analysis Of A Prototypical Atpase From The Type Iii Secretion System Of Pathogenic Bacteria Length = 347 Back     alignment and structure
>pdb|2DPY|A Chain A, Crystal Structure Of The Flagellar Type Iii Atpase Flii Length = 438 Back     alignment and structure
>pdb|2RKW|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding Pocket Inside The Subunit B Mutant R416w Of The Energy Converter A1ao Atp Synthase Length = 469 Back     alignment and structure
>pdb|3TGW|A Chain A, Crystal Structure Of Subunit B Mutant H156a Of The A1ao Atp Synthase Length = 460 Back     alignment and structure
>pdb|3TIV|A Chain A, Crystal Structure Of Subunit B Mutant N157a Of The A1ao Atp Synthase Length = 460 Back     alignment and structure
>pdb|2C61|A Chain A, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type Atpase From M. Mazei Go1 Length = 469 Back     alignment and structure
>pdb|3SSA|A Chain A, Crystal Structure Of Subunit B Mutant N157t Of The A1ao Atp Synthase Length = 460 Back     alignment and structure
>pdb|3VR6|A Chain A, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae V1-atpase [bv1] Length = 600 Back     alignment and structure
>pdb|3VR6|D Chain D, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae V1-atpase [bv1] Length = 465 Back     alignment and structure
>pdb|3VR2|D Chain D, Crystal Structure Of Nucleotide-free A3b3 Complex From Enterococcus Hirae V-atpase [ea3b3] Length = 465 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query198
2ck3_D482 ATP synthase subunit beta\, mitochondrial; hydrola 1e-134
1fx0_B498 ATP synthase beta chain; latent ATPase, thermal st 1e-128
1sky_E473 F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp 1e-124
3mfy_A588 V-type ATP synthase alpha chain; A-type ATP syntha 5e-57
3gqb_A578 V-type ATP synthase alpha chain; A3B3, V-ATPase, A 7e-55
3gqb_B464 V-type ATP synthase beta chain; A3B3, V-ATPase, AT 3e-33
2c61_A469 A-type ATP synthase non-catalytic subunit B; hydro 2e-22
2dpy_A438 FLII, flagellum-specific ATP synthase; beta barrel 4e-20
2obl_A347 ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O 9e-20
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ... Length = 482 Back     alignment and structure
 Score =  382 bits (984), Expect = e-134
 Identities = 153/168 (91%), Positives = 163/168 (97%)

Query: 30  QAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEH 89
           QAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI+G+EH
Sbjct: 312 QAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEH 371

Query: 90  YNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGH 149
           Y++ARGVQKILQDYKSLQDIIAILGMDELSEEDKLTV+RARKIQRFLSQPFQVAEVFTGH
Sbjct: 372 YDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGH 431

Query: 150 AGKLVPLEETIKGFSEILAGKYDHLPEVAFYMVGPIEEVVAKAETLAK 197
            GKLVPL+ETIKGF +ILAG+YDHLPE AFYMVGPIEE VAKA+ LA+
Sbjct: 432 LGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLAE 479
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B* Length = 498 Back     alignment and structure
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 Length = 473 Back     alignment and structure
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A Length = 588 Back     alignment and structure
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C Length = 578 Back     alignment and structure
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D* Length = 464 Back     alignment and structure
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A* Length = 469 Back     alignment and structure
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} Length = 438 Back     alignment and structure
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* Length = 347 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query198
1fx0_B498 ATP synthase beta chain; latent ATPase, thermal st 100.0
2ck3_D482 ATP synthase subunit beta\, mitochondrial; hydrola 100.0
1sky_E473 F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp 100.0
3vr4_D465 V-type sodium ATPase subunit D; V-ATPase, rotary m 100.0
2c61_A469 A-type ATP synthase non-catalytic subunit B; hydro 100.0
2r9v_A515 ATP synthase subunit alpha; TM1612, structural gen 100.0
3oaa_A513 ATP synthase subunit alpha; rossmann fold, hydrola 100.0
2qe7_A502 ATP synthase subunit alpha; blockage of ATP hydrol 100.0
2ck3_A510 ATP synthase subunit alpha\, mitochondrial; hydrol 100.0
1fx0_A507 ATP synthase alpha chain; latent ATPase, thermal s 100.0
3gqb_B464 V-type ATP synthase beta chain; A3B3, V-ATPase, AT 100.0
3mfy_A588 V-type ATP synthase alpha chain; A-type ATP syntha 100.0
3gqb_A578 V-type ATP synthase alpha chain; A3B3, V-ATPase, A 100.0
3vr4_A600 V-type sodium ATPase catalytic subunit A; V-ATPase 100.0
2obl_A347 ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O 100.0
3l0o_A427 Transcription termination factor RHO; helicase, RH 99.98
3ice_A422 Transcription termination factor RHO; transcriptio 99.97
2dpy_A438 FLII, flagellum-specific ATP synthase; beta barrel 99.96
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B* Back     alignment and structure
Probab=100.00  E-value=1.4e-58  Score=429.80  Aligned_cols=191  Identities=68%  Similarity=0.984  Sum_probs=181.7

Q ss_pred             ccCCCCccCCCCCCCC-------------CCcceecceeEEEecCCCCCCccccccccccCcEEEeeHHHHhcCCCCccC
Q psy6460           5 ASKSWFCIIGYQPDCL-------------KRFSIFLPAQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVD   71 (198)
Q Consensus         5 ~l~~~P~~~GYp~~vf-------------~~GSI~T~i~tVl~~gdD~~dPv~d~~~~ilDg~ivLsr~La~~g~yPAID   71 (198)
                      ++||||+++|||||||             ++||| |+||||++|+||++||||+++++||||||+|||+||++|||||||
T Consensus       288 ~lge~Ps~~GYpp~l~~~l~~L~ERag~~~~GSI-T~i~tV~v~~dD~tdPi~d~~~~ilDG~ivLsR~La~~giyPAID  366 (498)
T 1fx0_B          288 LLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSI-TSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVD  366 (498)
T ss_dssp             HHTCCCCGGGCCTTHHHHHHHTSSSSSCCTTCEE-CCEEEEECGGGCSSSHHHHHHHTTCSEEEEBCSTTTTTTCSSCBC
T ss_pred             hcCCCCccccCCchhhhHHHHHHHhccCCCCCce-eeeEEEEccCCCcCCcchHHHHHhhCceEEehhhHHhCCCCceec
Confidence            6899999999999999             67999 999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCCCccchhhcCCCC
Q psy6460          72 PLDSTSRIMDPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAG  151 (198)
Q Consensus        72 ~l~S~SR~~~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~~fL~Q~~~~~d~ft~~~~  151 (198)
                      |+.|+||+|++.+++++|+++++++|++|++|+++++||+++|+++++++++.+|+++++|++||+|++++++.||+.++
T Consensus       367 ~l~S~SR~~~~~i~~~~h~~~a~~lr~~la~y~el~~li~i~G~d~ls~~d~~~l~~~~~i~~fL~Q~~~v~e~ft~~~g  446 (498)
T 1fx0_B          367 PLDSTSTMLQPRIVGEEHYEIAQRVKETLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPG  446 (498)
T ss_dssp             SSSCCBTTCSTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTSCTTTHHHHHHHHHHHHHTCCCCSSCTTTSCSCC
T ss_pred             cccccccCCCcccCCHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHcCCchHHHHhhcCCC
Confidence            99999999977799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCHHHHHHHHHHHHhCcCCCCccchhccccChHHHHHHHHHhh
Q psy6460         152 KLVPLEETIKGFSEILAGKYDHLPEVAFYMVGPIEEVVAKAETLA  196 (198)
Q Consensus       152 ~~~~l~etl~~l~~i~~g~~d~ip~~~~~~~g~~~~~~~~~~~~~  196 (198)
                      +.+++++|+..|.+|++|++|++||++|||+|+|+|+++|++++.
T Consensus       447 ~~v~~~~t~~~l~~il~g~~d~~pe~~~~~~g~~~~~~~~~~~~~  491 (498)
T 1fx0_B          447 KYVGLAETIRGFQLILSGELDSLPEQAFYLVGNIDEATAKAMNLE  491 (498)
T ss_dssp             CCCCHHHHHHHHHTTTTTTTSSSCGGGTTTCSSSGGGCC------
T ss_pred             cccCHHHHHHHHHHHhcCcccCCCHHHhhcCCCHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999998764
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ... Back     alignment and structure
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 Back     alignment and structure
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D* Back     alignment and structure
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A* Back     alignment and structure
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8} Back     alignment and structure
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A Back     alignment and structure
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B Back     alignment and structure
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ... Back     alignment and structure
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A* Back     alignment and structure
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D* Back     alignment and structure
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A Back     alignment and structure
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C Back     alignment and structure
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A* Back     alignment and structure
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* Back     alignment and structure
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima} Back     alignment and structure
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A Back     alignment and structure
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 198
d1skye1114 a.69.1.1 (E:357-470) F1 ATP synthase beta subunit, 3e-69
d2jdid1118 a.69.1.1 (D:358-475) F1 ATP synthase beta subunit, 2e-68
d1fx0b1108 a.69.1.1 (B:378-485) F1 ATP synthase beta subunit, 2e-63
d1fx0a3276 c.37.1.11 (A:97-372) Central domain of alpha subun 4e-21
d1xpua3289 c.37.1.11 (A:129-417) Transcription termination fa 1e-20
d2jdia3285 c.37.1.11 (A:95-379) Central domain of alpha subun 2e-20
d2jdid3276 c.37.1.11 (D:82-357) Central domain of beta subuni 4e-20
>d1skye1 a.69.1.1 (E:357-470) F1 ATP synthase beta subunit, domain 3 {Bacillus sp., strain ps3 [TaxId: 1409]} Length = 114 Back     information, alignment and structure

class: All alpha proteins
fold: Left-handed superhelix
superfamily: C-terminal domain of alpha and beta subunits of F1 ATP synthase
family: C-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase beta subunit, domain 3
species: Bacillus sp., strain ps3 [TaxId: 1409]

 Score =  204 bits (521), Expect = 3e-69
 Identities = 75/112 (66%), Positives = 88/112 (78%)

Query: 84  IIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVA 143
           I+G EHY +AR VQ+ L+ YK LQDIIAILGMDELS+EDKL V RAR+IQ FLSQ F VA
Sbjct: 2   IVGEEHYQVARKVQQTLERYKELQDIIAILGMDELSDEDKLVVHRARRIQFFLSQNFHVA 61

Query: 144 EVFTGHAGKLVPLEETIKGFSEILAGKYDHLPEVAFYMVGPIEEVVAKAETL 195
           E FTG  G  VP++ET++GF EIL GKYDHLPE  F +VG IEEVV KA+ +
Sbjct: 62  EQFTGQPGSYVPVKETVRGFKEILEGKYDHLPEDRFRLVGRIEEVVEKAKAM 113
>d2jdid1 a.69.1.1 (D:358-475) F1 ATP synthase beta subunit, domain 3 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118 Back     information, alignment and structure
>d1fx0b1 a.69.1.1 (B:378-485) F1 ATP synthase beta subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} Length = 108 Back     information, alignment and structure
>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} Length = 276 Back     information, alignment and structure
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} Length = 289 Back     information, alignment and structure
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} Length = 285 Back     information, alignment and structure
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 276 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query198
d2jdid1118 F1 ATP synthase beta subunit, domain 3 {Rat (Rattu 100.0
d1skye1114 F1 ATP synthase beta subunit, domain 3 {Bacillus s 100.0
d1fx0b1108 F1 ATP synthase beta subunit, domain 3 {Spinach (S 99.97
d1xpua3289 Transcription termination factor Rho, ATPase domai 99.96
d2jdia3285 Central domain of alpha subunit of F1 ATP synthase 99.95
d1fx0a3276 Central domain of alpha subunit of F1 ATP synthase 99.95
d2jdid3276 Central domain of beta subunit of F1 ATP synthase 99.94
d1fx0a1129 F1 ATP synthase alpha subunit, domain 3 {Spinach ( 98.83
d2jdia1131 F1 ATP synthase alpha subunit, domain 3 {Cow (Bos 98.81
d1skyb1131 F1 ATP synthase alpha subunit, domain 3 {Bacillus 98.8
>d2jdid1 a.69.1.1 (D:358-475) F1 ATP synthase beta subunit, domain 3 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All alpha proteins
fold: Left-handed superhelix
superfamily: C-terminal domain of alpha and beta subunits of F1 ATP synthase
family: C-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase beta subunit, domain 3
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.8e-35  Score=222.89  Aligned_cols=117  Identities=87%  Similarity=1.312  Sum_probs=114.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhhHhHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCCCccchhhcCCCCcccCHHHHH
Q psy6460          81 DPNIIGAEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETI  160 (198)
Q Consensus        81 ~~~i~~~~~~~~a~~~r~lla~y~e~~~li~lgg~d~l~d~~~~~l~~~~~i~~fL~Q~~~~~d~ft~~~~~~~~l~etl  160 (198)
                      +|.+++++|+.+|++++++|++|++++++|++.|.|+||++|+.++.++++|++||.|+|++++.|||.+|+++++++|+
T Consensus         2 dP~ivGe~Hy~~a~~V~~~LqrYkeLqdIIaiLG~dELSeeDk~~V~RARklqrfLsQpFfvae~fTg~~G~~V~l~dTi   81 (118)
T d2jdid1           2 DPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETI   81 (118)
T ss_dssp             SHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSCHHHHHHHHHHHHHHHHHCCCCGGGHHHHSSCCCCCCHHHHH
T ss_pred             CccccChHHHHHHHHHHHHHHHhHHHHHHHHHcChhhcCHHHhHHHHHHHHHHHHhcCcceeeeeecCCCcceecHHHHH
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCcCCCCccchhccccChHHHHHHHHHhhc
Q psy6460         161 KGFSEILAGKYDHLPEVAFYMVGPIEEVVAKAETLAK  197 (198)
Q Consensus       161 ~~l~~i~~g~~d~ip~~~~~~~g~~~~~~~~~~~~~~  197 (198)
                      ..+.+|++|++|++||++|||+|+|+|+.+|++++++
T Consensus        82 ~g~~~Il~G~~D~~pE~~f~~vG~i~e~~~ka~~~~~  118 (118)
T d2jdid1          82 KGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLAE  118 (118)
T ss_dssp             HHHHHHHTTTTTTSCGGGGTTCSSHHHHHHHHHHHHC
T ss_pred             HHHHHHhCCCCCCCCHHHHhccCCHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999874
>d1skye1 a.69.1.1 (E:357-470) F1 ATP synthase beta subunit, domain 3 {Bacillus sp., strain ps3 [TaxId: 1409]} Back     information, alignment and structure
>d1fx0b1 a.69.1.1 (B:378-485) F1 ATP synthase beta subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} Back     information, alignment and structure
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} Back     information, alignment and structure
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1fx0a1 a.69.1.1 (A:373-501) F1 ATP synthase alpha subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} Back     information, alignment and structure
>d2jdia1 a.69.1.1 (A:380-510) F1 ATP synthase alpha subunit, domain 3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1skyb1 a.69.1.1 (B:372-502) F1 ATP synthase alpha subunit, domain 3 {Bacillus sp., strain ps3 [TaxId: 1409]} Back     information, alignment and structure