Psyllid ID: psy647

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190
Protein Sequence
MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKDKQCDVDVTLVTSNSQSQ
Secondary Structure (PSIPRED)
ccHHHHHHHHcccEEEEEEccccccccccccccccccccccccHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHcccEEEEccccccccEEEEcccccccccccccccHHHHHHHHHHccccEEcccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
MDPAEIEFIaedqnveiipkfnhlNLIHlisgdvgpfragipakvPLWLAINLKQRQKCRLVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDigaddipnvDLIRTLIKDIWDLRISKLRSSIDTFvksggghatlnhLTQFEINSIRNILCDVLDtmsslkdkqcdvDVTLVTSNSQSQ
Flexible Loop (DISEMBL)
MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLVLPTWMNLetlteikeeekkSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSlkdkqcdvDVTLVTSNSQSQ
Low Complexity Region (SEG)
MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLVLPTWMNletlteikeeekkSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKDKQCDVDVTLVTSNSQSQ
Disordered region (IsUnstruct)
******EFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKDKQCDVDVTL********
Disordered Region (DISOPRED)
*DPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLVLPTWMNLETLTEIKEEEK****FIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTM**********************
Disordered Region (DISEMBL)
MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKDKQCDVDVTLVTSNSQSQ
Disordered Region (DISPRO)
MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKDKQ***************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKDKQCDVDVTLVTSNSQSQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	190	2.2.26 [Sep-21-2011]
Q9D600	185	DNA replication complex G	yes	N/A	0.9	0.924	0.523	4e-48
Q9Y248	185	DNA replication complex G	yes	N/A	0.9	0.924	0.517	5e-48
Q7ZT46	185	DNA replication complex G	N/A	N/A	0.9	0.924	0.505	5e-48
Q9VQY9	203	Probable DNA replication	yes	N/A	0.9	0.842	0.517	1e-42
Q9C7A8	210	DNA replication complex G	yes	N/A	0.973	0.880	0.356	3e-31
O62193	180	Probable DNA replication	yes	N/A	0.842	0.888	0.388	3e-30
Q8IHI1	190	Probable DNA replication	N/A	N/A	0.836	0.836	0.370	2e-29
P0CQ30	185	DNA replication complex G	yes	N/A	0.7	0.718	0.382	8e-24
P0CQ31	185	DNA replication complex G	N/A	N/A	0.7	0.718	0.382	8e-24
Q54BL9	223	Probable DNA replication	yes	N/A	0.810	0.690	0.376	7e-22

>sp|Q9D600|PSF2_MOUSE DNA replication complex GINS protein PSF2 OS=Mus musculus GN=Gins2 PE=1 SV=1

 Score =  191 bits (484), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 90/172 (52%), Positives = 124/172 (72%), Gaps = 1/172 (0%)

Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           MD AE+EF+AE + V IIP F+ L+ I+LI GD+GPF  G+P  VPLWLAINLKQRQKCR
Sbjct: 1   MDAAEVEFLAEKELVTIIPNFS-LDKIYLIGGDLGPFNPGLPVDVPLWLAINLKQRQKCR 59

Query: 61  LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
           L+ P WM++E L ++++EE+K   F  +PS HYME++ ++L+  +D+IP  D IRTLIKD
Sbjct: 60  LLPPEWMDVEKLEQMRDEERKEETFTPVPSPHYMEITKLLLNHASDNIPKADTIRTLIKD 119

Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
           +WD R++KLR S D+FV+    HA L++LT  EI+S    L   L+ M  L+
Sbjct: 120 LWDTRMAKLRVSADSFVRQQEAHAKLDNLTLMEISSSGAFLTQALNHMYKLR 171

The GINS complex plays an essential role in the initiation of DNA replication, and progression of DNA replication forks. GINS complex seems to bind preferentially to single-stranded DNA.
Mus musculus (taxid: 10090)

>sp|Q9Y248|PSF2_HUMAN DNA replication complex GINS protein PSF2 OS=Homo sapiens GN=GINS2 PE=1 SV=1

 Score =  190 bits (483), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 89/172 (51%), Positives = 124/172 (72%), Gaps = 1/172 (0%)

Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           MD AE+EF+AE + V IIP F+ L+ I+LI GD+GPF  G+P +VPLWLAINLKQRQKCR
Sbjct: 1   MDAAEVEFLAEKELVTIIPNFS-LDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCR 59

Query: 61  LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
           L+ P WM++E L ++++ E+K   F  MPS +YME++ ++L+  +D+IP  D IRTL+KD
Sbjct: 60  LLPPEWMDVEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKD 119

Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
           +WD RI+KLR S D+FV+    HA L++LT  EIN+    L   L+ M  L+
Sbjct: 120 MWDTRIAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGTFLTQALNHMYKLR 171

The GINS complex plays an essential role in the initiation of DNA replication, and progression of DNA replication forks. GINS complex seems to bind preferentially to single-stranded DNA.

Homo sapiens (taxid: 9606)

>sp|Q7ZT46|PSF2_XENLA DNA replication complex GINS protein PSF2 OS=Xenopus laevis GN=gins2 PE=2 SV=1

 Score =  190 bits (483), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 87/172 (50%), Positives = 123/172 (71%), Gaps = 1/172 (0%)

Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           MD +E+EF+AE + V +IP F+ L+ ++LI GD+GPF   +P +VPLWLAINLKQRQKCR
Sbjct: 1   MDASEVEFLAEKEQVTVIPNFS-LDKVYLIGGDLGPFNPSLPVEVPLWLAINLKQRQKCR 59

Query: 61  LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
           +V P WM++E L  I+++E++   F  MPS +YME++ ++L+  AD+IP  D IRTL+KD
Sbjct: 60  IVPPEWMDVEKLEAIRDQERREETFTPMPSPYYMELTKLLLNHAADNIPKADEIRTLVKD 119

Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
            WD RI+KLR S D+FVK    HA L++LT  EIN+I     + L+ M  L+
Sbjct: 120 TWDTRIAKLRLSADSFVKGQEAHAKLDNLTLMEINTIGTFFTESLNHMYKLR 171

The GINS complex plays an essential role in the initiation of DNA replication.

Xenopus laevis (taxid: 8355)

>sp|Q9VQY9|PSF2_DROME Probable DNA replication complex GINS protein PSF2 OS=Drosophila melanogaster GN=Psf2 PE=2 SV=1

 Score =  172 bits (437), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 89/172 (51%), Positives = 126/172 (73%), Gaps = 1/172 (0%)

Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           MDP+ IEFI E   + IIP F++  L HLI G VGPFRAG P  VPLW+A +L+++QKCR
Sbjct: 1   MDPSIIEFIGEKCMISIIPNFSNEPL-HLIYGPVGPFRAGFPVFVPLWMATHLRKQQKCR 59

Query: 61  LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
           +V P WM+++ L EIKEEEK+S+FF KMP +HYM ++ +++    DD+P  + +RT+IKD
Sbjct: 60  IVPPEWMDMDILEEIKEEEKRSKFFTKMPCEHYMVVAQLVMSTAPDDVPRCEELRTVIKD 119

Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
           I+D+R SKLR+SID F+K  G +A L++LT  EI+S+R IL   LD ++  +
Sbjct: 120 IFDIRESKLRTSIDAFIKGEGTYAKLDNLTLLEIHSVRPILPYSLDHIARYQ 171

The GINS complex plays an essential role in the initiation of DNA replication.

Drosophila melanogaster (taxid: 7227)

>sp|Q9C7A8|PSF2_ARATH DNA replication complex GINS protein PSF2 OS=Arabidopsis thaliana GN=GINS2 PE=2 SV=2

 Score =  134 bits (338), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 67/188 (35%), Positives = 114/188 (60%), Gaps = 3/188 (1%)

Query: 3   PAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLV 62
           P E+EF+AED+ VEI+P  N +  ++ ISGD G F   IP KVPLWLA+ LK+R KC   
Sbjct: 14  PQEVEFMAEDELVEIVPNMN-MEQLNFISGDFGRFIPQIPTKVPLWLAVALKRRGKCTFR 72

Query: 63  LPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDIW 122
            P WM+++ LT+I E E++S+   +     Y+E++ ++ D   DDIP++ ++R+L++DI 
Sbjct: 73  PPGWMSVDNLTQILEAERESQSTFQALPFSYVEIARLLFDHARDDIPDMYMVRSLVEDIR 132

Query: 123 DLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKDKQCDVDVTL 182
           D+R+ KL +++ +F   G     +++++  E+N +R  +   L+        + DVD   
Sbjct: 133 DVRLHKLETNLGSF--QGTSAVKISNVSAMEVNIVRPFVIRALEAFYKHDKPEADVDRDT 190

Query: 183 VTSNSQSQ 190
            +S  Q +
Sbjct: 191 RSSRQQRE 198

The GINS complex plays an essential role in the initiation of DNA replication.

Arabidopsis thaliana (taxid: 3702)

>sp|O62193|PSF2_CAEEL Probable DNA replication complex GINS protein PSF2 OS=Caenorhabditis elegans GN=F31C3.5 PE=3 SV=1

 Score =  131 bits (329), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 63/162 (38%), Positives = 105/162 (64%), Gaps = 2/162 (1%)

Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           M+    EFIA +  +E+IP  +    IHLISGD+GPF AG+P ++P+W AI +K++  C+
Sbjct: 1   MNAERCEFIAGNSLIEVIPSISDDRPIHLISGDIGPFEAGVPCRIPVWTAILMKRKHNCK 60

Query: 61  LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
           +V P WM+++ L +I   E +S+   K+P DH+ E+SH+++    +DI  V+ +++L++D
Sbjct: 61  VVAPQWMDVDELKKILTSETESQGLAKLP-DHFFEISHMLVRDAREDIFEVEAVKSLVQD 119

Query: 121 IWDLRISKLRSSIDTFVKSGGG-HATLNHLTQFEINSIRNIL 161
           I+D R +KLRSS   F++     HA L+++   E +S R  L
Sbjct: 120 IYDRRDAKLRSSAIEFLRQNQTCHAQLDNVQLIEASSARATL 161

The GINS complex plays an essential role in the initiation of DNA replication.

Caenorhabditis elegans (taxid: 6239)

>sp|Q8IHI1|PSF2_BRUMA Probable DNA replication complex GINS protein PSF2 OS=Brugia malayi GN=BMBAC01P19.06 PE=3 SV=1

 Score =  128 bits (322), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 106/162 (65%), Gaps = 3/162 (1%)

Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           M P + EFIA ++ ++I P+FN L+ +HLI GD+GPF AG+P  VPLW+A+ L++R+KC 
Sbjct: 1   MTPEQCEFIAGNEWIQINPQFN-LDELHLICGDIGPFEAGMPIWVPLWIAVTLRKRRKCT 59

Query: 61  LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
           ++ P W+ +E L ++   E  +  F ++P   Y+E++H+ +    +D+P+ D+IR  ++D
Sbjct: 60  IIPPQWLCVEELKKLVIAESGTNAFGQVPR-FYLEIAHMFVQYAKEDLPDSDMIRVYVQD 118

Query: 121 IWDLRISKLRSSIDTFV-KSGGGHATLNHLTQFEINSIRNIL 161
           +WD R +KL +S   F+ +    HA ++++T  E+  I+  L
Sbjct: 119 LWDKRSAKLNNSSTKFLGQVESCHARMDNITLMEVAYIKRSL 160

The GINS complex plays an essential role in the initiation of DNA replication.

Brugia malayi (taxid: 6279)

>sp|P0CQ30|PSF2_CRYNJ DNA replication complex GINS protein PSF2 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=PSF2 PE=3 SV=1

 Score =  110 bits (274), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 93/136 (68%), Gaps = 3/136 (2%)

Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           + P E+ F+AE  ++ I+P F+ +  + LISG  GPFR    ++VPLWL ++LK+++KCR
Sbjct: 11  LTPDELAFLAEHDHISIVPLFS-MTRVRLISGIYGPFRPPSASRVPLWLGLSLKKKRKCR 69

Query: 61  LVLPTWMNLETLTE-IKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIK 119
           +V P W++ E L   +++E++ S  F ++P   +ME+S ++LDI +DD+    L+R+L+K
Sbjct: 70  IVPPEWLSAERLQAFLRDEKENSEGFERLPR-RFMEISKVLLDIASDDLSQPTLLRSLLK 128

Query: 120 DIWDLRISKLRSSIDT 135
           DI ++R +K+R  + +
Sbjct: 129 DIREVRQAKIRMGLQS 144

The GINS complex plays an essential role in the initiation of DNA replication. Has a role in chromosome segregation.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CQ31|PSF2_CRYNB DNA replication complex GINS protein PSF2 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=PSF2 PE=3 SV=1

 Score =  110 bits (274), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 93/136 (68%), Gaps = 3/136 (2%)

Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           + P E+ F+AE  ++ I+P F+ +  + LISG  GPFR    ++VPLWL ++LK+++KCR
Sbjct: 11  LTPDELAFLAEHDHISIVPLFS-MTRVRLISGIYGPFRPPSASRVPLWLGLSLKKKRKCR 69

Query: 61  LVLPTWMNLETLTE-IKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIK 119
           +V P W++ E L   +++E++ S  F ++P   +ME+S ++LDI +DD+    L+R+L+K
Sbjct: 70  IVPPEWLSAERLQAFLRDEKENSEGFERLPR-RFMEISKVLLDIASDDLSQPTLLRSLLK 128

Query: 120 DIWDLRISKLRSSIDT 135
           DI ++R +K+R  + +
Sbjct: 129 DIREVRQAKIRMGLQS 144

The GINS complex plays an essential role in the initiation of DNA replication. Has a role in chromosome segregation.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|Q54BL9|PSF2_DICDI Probable DNA replication complex GINS protein PSF2 OS=Dictyostelium discoideum GN=gins2 PE=3 SV=1

 Score =  103 bits (257), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 95/162 (58%), Gaps = 8/162 (4%)

Query: 3   PAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLV 62
           P++IEF+AED  + ++P F   +LI L SG+ GPF    P ++PLWLAI+LK+++KC + 
Sbjct: 8   PSQIEFLAEDTTITVVPNFKMESLIFL-SGEYGPFVPSFPIEIPLWLAISLKKKKKCTIT 66

Query: 63  LPTWMNLETL-TEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDI 121
            P WM    L  + +EE K    FI++P +++ E+S ++L    DDI +++ IR L  DI
Sbjct: 67  PPDWMTYNKLKAKFQEENKIKDGFIELP-ENFDEISSLLLANCPDDIKDINKIRILKGDI 125

Query: 122 WDLRISKLRSSIDTFVKS---GGGHATL--NHLTQFEINSIR 158
              R  KL  S+ + + S   G    T+   + +  EIN IR
Sbjct: 126 LSRREKKLEESLKSHLNSLTDGESVTTMEFKNFSMMEINKIR 167

The GINS complex plays an essential role in the initiation of DNA replication.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
340711251	188	PREDICTED: probable DNA replication comp	0.878	0.888	0.607	2e-56
307170552	186	DNA replication complex GINS protein PSF	0.878	0.897	0.595	3e-54
156553960	187	PREDICTED: probable DNA replication comp	0.878	0.893	0.571	4e-53
321469936	192	hypothetical protein DAPPUDRAFT_50715 [D	0.9	0.890	0.563	4e-53
380023290	173	PREDICTED: DNA replication complex GINS	0.878	0.965	0.577	7e-53
307212057	183	Probable DNA replication complex GINS pr	0.942	0.978	0.561	2e-52
357613691	196	putative DNA replication complex GINS pr	0.994	0.964	0.526	2e-52
405963795	183	DNA replication complex GINS protein PSF	0.9	0.934	0.558	4e-52
328778778	247	PREDICTED: DNA replication complex GINS	0.878	0.676	0.559	5e-52
332030489	185	Putative DNA replication complex GINS pr	0.942	0.967	0.532	2e-51

>gi|340711251|ref|XP_003394192.1| PREDICTED: probable DNA replication complex GINS protein PSF2-like [Bombus terrestris]

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 102/168 (60%), Positives = 135/168 (80%), Gaps = 1/168 (0%)

Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           MDP+E+EFI E + V I+P F+  ++IHLISG VGPFRAG+P KVP+WLA+NLKQ+QKCR
Sbjct: 1   MDPSEVEFIGEKELVTIVPNFS-FDMIHLISGSVGPFRAGLPVKVPIWLAVNLKQQQKCR 59

Query: 61  LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
           +V   WM+++ L E KEEEK S+ FIKMPS+HYME + ++L++G+DDIP+ D I+T +KD
Sbjct: 60  IVNQDWMDVDGLNETKEEEKLSKLFIKMPSNHYMEEAQLLLNVGSDDIPDADRIKTAVKD 119

Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTM 168
           IWD+R+SKLR+SID F+KS G HA L+HLT  EINS+R +L   LD M
Sbjct: 120 IWDIRMSKLRTSIDAFLKSEGLHAKLDHLTAMEINSVRPLLPHALDQM 167

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307170552|gb|EFN62760.1| DNA replication complex GINS protein PSF2 [Camponotus floridanus]

 Score =  216 bits (551), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 100/168 (59%), Positives = 133/168 (79%), Gaps = 1/168 (0%)

Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           MDP++IEF+ E Q V I+P FN L++I+LISG VGPFRAG+P KVP+WLA++LKQ+QKCR
Sbjct: 1   MDPSKIEFLGEKQLVNIVPNFN-LDIIYLISGSVGPFRAGLPVKVPIWLAVSLKQKQKCR 59

Query: 61  LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
           ++   WMN+E+L + KE EK S+ F +MPS+HY++ S I+L++  DDIP+ D IRT +KD
Sbjct: 60  IINQEWMNIESLNDRKEMEKMSKLFTEMPSNHYIDESQILLNVANDDIPDADRIRTSVKD 119

Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTM 168
           IWD+R+SKLR+S+D FVKS G HA L+HLT  EINSIR +L   LD M
Sbjct: 120 IWDIRMSKLRTSVDAFVKSEGVHARLDHLTAMEINSIRPLLPHALDQM 167

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156553960|ref|XP_001602753.1| PREDICTED: probable DNA replication complex GINS protein PSF2-like [Nasonia vitripennis]

 Score =  213 bits (541), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 96/168 (57%), Positives = 133/168 (79%), Gaps = 1/168 (0%)

Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           MDP+E+EF+ E Q V I+P F+   +IHLISG +GPFRAG+P +VP+W+A++LKQ+QKCR
Sbjct: 1   MDPSEVEFLGEKQLVSIVPNFS-FGVIHLISGSIGPFRAGLPVRVPIWIALSLKQQQKCR 59

Query: 61  LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
           +V   WM++E LTEI EEEK+S+ F +MP++H+M+ + ++L    DDIP+VD IRT+IK 
Sbjct: 60  IVAQEWMDMEKLTEILEEEKQSKLFTRMPNNHFMDEAQMLLTAAPDDIPDVDNIRTIIKX 119

Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTM 168
           IWDLR++KLRSS+  FVK+ G +A L+HLT  EINSIR++L D LD M
Sbjct: 120 IWDLRMAKLRSSVIGFVKNEGTYAKLDHLTAMEINSIRSLLPDALDIM 167

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321469936|gb|EFX80914.1| hypothetical protein DAPPUDRAFT_50715 [Daphnia pulex]

 Score =  213 bits (541), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 97/172 (56%), Positives = 129/172 (75%), Gaps = 1/172 (0%)

Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           M+PAE+EF+AE+Q+++I P F+H + ++LI G+VGPFR GIP +VPLW+AINLKQRQKCR
Sbjct: 1   MNPAEVEFLAENQSIQITPNFSH-DRLYLICGEVGPFRPGIPVQVPLWMAINLKQRQKCR 59

Query: 61  LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
           L  P WM +ETLT+IKE+E +S+ F  MP  HYM  + +IL     DIPN D IR L+KD
Sbjct: 60  LTAPEWMTVETLTKIKEDEGQSKTFTPMPDQHYMVTTQLILGAAPHDIPNTDEIRILVKD 119

Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
           IWD+RI+KLRSS+D F+K GG  A ++HLT  EIN++R  L   LD +  L+
Sbjct: 120 IWDMRIAKLRSSVDAFLKIGGSLAKVDHLTLMEINTVRPFLPHALDQLFRLR 171

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380023290|ref|XP_003695457.1| PREDICTED: DNA replication complex GINS protein PSF2-like, partial [Apis florea]

 Score =  212 bits (539), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 97/168 (57%), Positives = 128/168 (76%), Gaps = 1/168 (0%)

Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           MDP+E+EF+ E + V I+P F+  + IHLISG VGPFRAG+P KVP+WLA+NLKQ+QKCR
Sbjct: 1   MDPSEVEFLGEKELVTIVPNFS-FDTIHLISGSVGPFRAGLPVKVPIWLAVNLKQQQKCR 59

Query: 61  LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
           ++   WMN E+L E KEEEK S+ F KMPS+HY++ + ++L   +DDI   D IRT +KD
Sbjct: 60  IINQEWMNAESLNEAKEEEKLSKLFTKMPSNHYVDETQLLLSAASDDIHEADNIRTAVKD 119

Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTM 168
           +WD+R+SKLR+SID F+KS G HA L+HLT  EINS+R +L   LD M
Sbjct: 120 LWDIRMSKLRTSIDAFLKSDGMHAKLDHLTAMEINSVRPLLPHALDQM 167

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307212057|gb|EFN87940.1| Probable DNA replication complex GINS protein PSF2 [Harpegnathos saltator]

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 101/180 (56%), Positives = 132/180 (73%), Gaps = 1/180 (0%)

Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           MDP+E+EF+ E Q V IIP FN L++IHLISG VGPFRAG+P KVP+WLA+ LKQ+QKCR
Sbjct: 1   MDPSEVEFLGEKQLVSIIPNFN-LDVIHLISGSVGPFRAGLPVKVPIWLAVCLKQKQKCR 59

Query: 61  LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
           ++   WM +E L E KE EK S+ F +MPS HY++ S I+L  G DDIP+ D IR  +KD
Sbjct: 60  IINQEWMEVENLNERKEMEKMSKLFTEMPSYHYIDESQILLSTGNDDIPDADGIRIAVKD 119

Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKDKQCDVDV 180
           IWD+R+SKLR+S+D FVK+ G HA L+HLT  EIN IR +L   LD M  ++    D+++
Sbjct: 120 IWDIRMSKLRTSMDAFVKNEGVHARLDHLTAMEINGIRPLLPHALDQMLRIQSVSIDLEI 179

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357613691|gb|EHJ68662.1| putative DNA replication complex GINS protein pSF2 [Danaus plexippus]

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 100/190 (52%), Positives = 136/190 (71%), Gaps = 1/190 (0%)

Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           MDP EIEFI E++ V IIP F++ + I+LI G+ GPFRAG+P  VPLWLA+ LKQ+QKCR
Sbjct: 1   MDPYEIEFIGENRIVSIIPNFSY-DKIYLICGEFGPFRAGLPMNVPLWLAVMLKQKQKCR 59

Query: 61  LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
           +V P WM++E L  IKEEEKKSRFF KMP++HYM  + +IL    +DIP    I+T+IKD
Sbjct: 60  IVPPDWMDIEILEGIKEEEKKSRFFTKMPNEHYMVEAKLILGAANEDIPRAAEIKTIIKD 119

Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKDKQCDVDV 180
           IWD+R+SKLR+S+D  +KSGG +  L+HLT  EINS++ IL + +D +  +K        
Sbjct: 120 IWDIRMSKLRTSMDALMKSGGSYGRLDHLTMMEINSVKPILPEAMDELYRIKVTSRKTIP 179

Query: 181 TLVTSNSQSQ 190
             + S++ SQ
Sbjct: 180 ATLNSSTYSQ 189

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405963795|gb|EKC29341.1| DNA replication complex GINS protein PSF2 [Crassostrea gigas]

 Score =  209 bits (532), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 96/172 (55%), Positives = 128/172 (74%), Gaps = 1/172 (0%)

Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           MDP+E+EF+AE + V ++P F  L+ I+LI GD+GP   G+P +VPLW+A+NLKQ QKCR
Sbjct: 1   MDPSEVEFLAEKEFVTVVPNF-ALDKIYLIGGDIGPLTPGLPVQVPLWMAVNLKQGQKCR 59

Query: 61  LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
           +V P WM+++ L + K+EE  S+FF KMP DHY+E++ ++L    DDIP+ D IRTL+KD
Sbjct: 60  IVPPEWMDIDRLQDKKQEETDSKFFTKMPCDHYIEVTQLLLKSATDDIPHADEIRTLVKD 119

Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
           IWDLRI+KLRSSIDTFVKS   HA LN LT  E+N++R  L   LD M  L+
Sbjct: 120 IWDLRIAKLRSSIDTFVKSDATHAKLNFLTLMELNTVRPFLTKALDQMHVLR 171

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|328778778|ref|XP_392289.2| PREDICTED: DNA replication complex GINS protein PSF2 [Apis mellifera]

 Score =  209 bits (531), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 94/168 (55%), Positives = 128/168 (76%), Gaps = 1/168 (0%)

Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           MDP+E+EF+ E + V ++P F+  + IHLISG VGPFRAG+P K+P+WLA+NLKQ+QKCR
Sbjct: 1   MDPSEVEFLGEKELVTVVPNFS-FDTIHLISGSVGPFRAGLPVKIPIWLAVNLKQQQKCR 59

Query: 61  LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
           ++   WM+ E+L E KEEEK S+ F KMPS+HY++ + ++L   +DDI   D IRT +KD
Sbjct: 60  IINQDWMDAESLNEAKEEEKLSKLFTKMPSNHYVDETQLLLSAASDDIHEADKIRTAVKD 119

Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTM 168
           +WD+R+SKLR+SID F+KS G HA L+HLT  EINS+R +L   LD M
Sbjct: 120 LWDIRMSKLRTSIDAFLKSDGMHAKLDHLTAMEINSVRPLLPHALDQM 167

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030489|gb|EGI70177.1| Putative DNA replication complex GINS protein PSF2 [Acromyrmex echinatior]

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 99/186 (53%), Positives = 134/186 (72%), Gaps = 7/186 (3%)

Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           M+P+E+EF+ E Q V I+P FN  ++I+LISG VGPFRAG+P +VP+WLA+ LKQ+QKCR
Sbjct: 1   MNPSEVEFLGEKQLVSIVPNFNS-DIIYLISGSVGPFRAGLPVRVPIWLAVCLKQKQKCR 59

Query: 61  LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
           +V   WM++E L E KE EK S+ F +MPS HYM+ S I+L++  DDIP+ D IR  +KD
Sbjct: 60  IVSQEWMDIEGLNERKEMEKMSKLFTEMPSSHYMDESQILLNVANDDIPDADGIRIAVKD 119

Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLD------TMSSLKDK 174
           IWD+R+SKLR+S+D FVKS G HA L+HLT  EIN IR +L   LD      +M  +  +
Sbjct: 120 IWDIRMSKLRTSVDAFVKSEGVHARLDHLTAMEINGIRPLLPHALDQILRIQSMKQIPSR 179

Query: 175 QCDVDV 180
             +V+V
Sbjct: 180 VVEVEV 185

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
ZFIN|ZDB-GENE-050419-19	182	gins2 "GINS complex subunit 2"	0.9	0.939	0.488	3.6e-41
UNIPROTKB|Q9Y248	185	GINS2 "DNA replication complex	0.9	0.924	0.494	4.2e-40
UNIPROTKB|Q7ZT46	185	gins2 "DNA replication complex	0.9	0.924	0.482	4.2e-40
RGD|1311055	185	Gins2 "GINS complex subunit 2	0.9	0.924	0.494	6.8e-40
UNIPROTKB|E1BC42	185	GINS2 "DNA replication complex	0.9	0.924	0.488	1.1e-39
UNIPROTKB|E2QU81	185	GINS2 "DNA replication complex	0.9	0.924	0.482	1.1e-39
MGI|MGI:1921019	185	Gins2 "GINS complex subunit 2	0.9	0.924	0.494	1.1e-39
UNIPROTKB|F1S6I3	185	GINS2 "DNA replication complex	0.9	0.924	0.476	1.6e-38
FB|FBgn0261976	203	Psf2 "Psf2" [Drosophila melano	0.868	0.812	0.487	4.3e-38
WB|WBGene00009287	180	F31C3.5 [Caenorhabditis elegan	0.842	0.888	0.370	4.5e-27

ZFIN|ZDB-GENE-050419-19 gins2 "GINS complex subunit 2" [Danio rerio (taxid:7955)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 84/172 (48%), Positives = 118/172 (68%)

Query:     1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
             MDPAE+EF+AE + V+IIP F+ L+ I+LI GD+GPF  G+P +VP+WLA+NLKQRQKCR
Sbjct:     1 MDPAEVEFLAEKEMVKIIPNFS-LDKIYLIGGDLGPFNPGLPVEVPVWLALNLKQRQKCR 59

Query:    61 LVLPTWMNXXXXXXXXXXXXXSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
             +V P WM+                F  +P+ +YME++ ++L+  AD+IP  D IRTL+KD
Sbjct:    60 IVPPEWMDTDKLEDIREQERKLDTFTPIPNPYYMELTKLLLNHAADNIPKADEIRTLVKD 119

Query:   121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
             IWD R++KLR S D+F+     HA L++LT  EIN+ R+ L D L+ M  L+
Sbjct:   120 IWDTRMAKLRLSADSFISQQEAHAQLDNLTLMEINTTRSFLLDSLNYMYKLR 171

GO:0005634 "nucleus" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

UNIPROTKB|Q9Y248 GINS2 "DNA replication complex GINS protein PSF2" [Homo sapiens (taxid:9606)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 85/172 (49%), Positives = 114/172 (66%)

Query:     1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
             MD AE+EF+AE + V IIP F+ L+ I+LI GD+GPF  G+P +VPLWLAINLKQRQKCR
Sbjct:     1 MDAAEVEFLAEKELVTIIPNFS-LDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCR 59

Query:    61 LVLPTWMNXXXXXXXXXXXXXSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
             L+ P WM+                F  MPS +YME++ ++L+  +D+IP  D IRTL+KD
Sbjct:    60 LLPPEWMDVEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKD 119

Query:   121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
             +WD RI+KLR S D+FV+    HA L++LT  EIN+    L   L+ M  L+
Sbjct:   120 MWDTRIAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGTFLTQALNHMYKLR 171

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006271 "DNA strand elongation involved in DNA replication" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q7ZT46 gins2 "DNA replication complex GINS protein PSF2" [Xenopus laevis (taxid:8355)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 83/172 (48%), Positives = 113/172 (65%)

Query:     1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
             MD +E+EF+AE + V +IP F+ L+ ++LI GD+GPF   +P +VPLWLAINLKQRQKCR
Sbjct:     1 MDASEVEFLAEKEQVTVIPNFS-LDKVYLIGGDLGPFNPSLPVEVPLWLAINLKQRQKCR 59

Query:    61 LVLPTWMNXXXXXXXXXXXXXSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
             +V P WM+                F  MPS +YME++ ++L+  AD+IP  D IRTL+KD
Sbjct:    60 IVPPEWMDVEKLEAIRDQERREETFTPMPSPYYMELTKLLLNHAADNIPKADEIRTLVKD 119

Query:   121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
              WD RI+KLR S D+FVK    HA L++LT  EIN+I     + L+ M  L+
Sbjct:   120 TWDTRIAKLRLSADSFVKGQEAHAKLDNLTLMEINTIGTFFTESLNHMYKLR 171

GO:0000811 "GINS complex" evidence=IPI

GO:0003682 "chromatin binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006260 "DNA replication" evidence=IMP

GO:0006271 "DNA strand elongation involved in DNA replication" evidence=IDA

GO:0032784 "regulation of DNA-dependent transcription, elongation" evidence=IDA

RGD|1311055 Gins2 "GINS complex subunit 2 (Psf2 homolog)" [Rattus norvegicus (taxid:10116)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 85/172 (49%), Positives = 113/172 (65%)

Query:     1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
             MD AE+EF+AE + V IIP F+ L+ I+LI GD+GPF  G+P  VPLWLAINLKQRQKCR
Sbjct:     1 MDAAEVEFLAEKELVTIIPNFS-LDKIYLIGGDLGPFNPGLPVDVPLWLAINLKQRQKCR 59

Query:    61 LVLPTWMNXXXXXXXXXXXXXSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
             L+ P WM+                F  +PS HYME++ ++L+  +D+IP  D IRTLIKD
Sbjct:    60 LLPPEWMDVEKLEQMRDEERKEETFTPVPSPHYMEITKLLLNHASDNIPKADTIRTLIKD 119

Query:   121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
             +WD R++KLR S D+FV+    HA L++LT  EIN+    L   L+ M  L+
Sbjct:   120 LWDTRMAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGAFLTQALNHMYKLR 171

GO:0005634 "nucleus" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

UNIPROTKB|E1BC42 GINS2 "DNA replication complex GINS protein PSF2" [Bos taurus (taxid:9913)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 84/172 (48%), Positives = 113/172 (65%)

Query:     1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
             MD AE+EF+AE + V IIP F+ L+ I+LI GD+GPF  G+P +VPLWLA+NLKQRQKCR
Sbjct:     1 MDAAEVEFLAEKELVTIIPNFS-LDKIYLIGGDLGPFNPGLPVQVPLWLAVNLKQRQKCR 59

Query:    61 LVLPTWMNXXXXXXXXXXXXXSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
             L+ P WM+                F  MPS +YME++ ++L+  +D+IP  D IRTLIKD
Sbjct:    60 LLPPEWMDVEKLEKIRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLIKD 119

Query:   121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
             +WD RI+K R S D+FV+    HA L++LT  EIN+    L   L+ M  L+
Sbjct:   120 VWDTRIAKFRVSADSFVRQQEAHAKLDNLTLMEINTSGAFLTQALNHMYKLR 171

GO:0005634 "nucleus" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

UNIPROTKB|E2QU81 GINS2 "DNA replication complex GINS protein PSF2" [Canis lupus familiaris (taxid:9615)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 83/172 (48%), Positives = 115/172 (66%)

Query:     1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
             MD AE+EF+AE + V IIP F+ ++ ++LI GD+GPF  G+P +VPLWLAINLKQRQKCR
Sbjct:     1 MDAAEVEFLAEKELVTIIPNFS-VDKMYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCR 59

Query:    61 LVLPTWMNXXXXXXXXXXXXXSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
             L+ P WM+                F  MPS +YME++ ++L+  +D+IP  D IRTL+KD
Sbjct:    60 LIPPEWMDVEKLEKIRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKD 119

Query:   121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
             +WD RI+KLR S D+FV+    HA L++LT  EI+S    L + L+ M  L+
Sbjct:   120 VWDTRIAKLRVSADSFVRQQEAHAKLDNLTLMEISSSGPFLTEALNHMYKLR 171

GO:0005634 "nucleus" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

MGI|MGI:1921019 Gins2 "GINS complex subunit 2 (Psf2 homolog)" [Mus musculus (taxid:10090)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 85/172 (49%), Positives = 113/172 (65%)

Query:     1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
             MD AE+EF+AE + V IIP F+ L+ I+LI GD+GPF  G+P  VPLWLAINLKQRQKCR
Sbjct:     1 MDAAEVEFLAEKELVTIIPNFS-LDKIYLIGGDLGPFNPGLPVDVPLWLAINLKQRQKCR 59

Query:    61 LVLPTWMNXXXXXXXXXXXXXSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
             L+ P WM+                F  +PS HYME++ ++L+  +D+IP  D IRTLIKD
Sbjct:    60 LLPPEWMDVEKLEQMRDEERKEETFTPVPSPHYMEITKLLLNHASDNIPKADTIRTLIKD 119

Query:   121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
             +WD R++KLR S D+FV+    HA L++LT  EI+S    L   L+ M  L+
Sbjct:   120 LWDTRMAKLRVSADSFVRQQEAHAKLDNLTLMEISSSGAFLTQALNHMYKLR 171

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1S6I3 GINS2 "DNA replication complex GINS protein PSF2" [Sus scrofa (taxid:9823)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 82/172 (47%), Positives = 111/172 (64%)

Query:     1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
             MD AE+EF+AE + V IIP F+ L+ I+LI GD+GPF  G+P +VPLWLAINLKQRQKCR
Sbjct:     1 MDAAEVEFLAEKELVTIIPNFS-LDKIYLIGGDLGPFNPGLPVQVPLWLAINLKQRQKCR 59

Query:    61 LVLPTWMNXXXXXXXXXXXXXSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
             L+ P WM+                F   P+ HY E++ ++L+  +D+IP  D IRTLIKD
Sbjct:    60 LLAPEWMDVEKLEKMRDHERKEDTFTPAPNPHYTELTKLLLNHASDNIPKADEIRTLIKD 119

Query:   121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
             +WD R++KLR S D+FV+    HA L++LT  E+N+    L   L  M  L+
Sbjct:   120 VWDTRVAKLRVSADSFVRQQEAHAKLDNLTLMEVNAGGAFLTRALSHMFKLR 171

GO:0005634 "nucleus" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

FB|FBgn0261976 Psf2 "Psf2" [Drosophila melanogaster (taxid:7227)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 81/166 (48%), Positives = 112/166 (67%)

Query:     1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
             MDP+ IEFI E   + IIP F++  L HLI G VGPFRAG P  VPLW+A +L+++QKCR
Sbjct:     1 MDPSIIEFIGEKCMISIIPNFSNEPL-HLIYGPVGPFRAGFPVFVPLWMATHLRKQQKCR 59

Query:    61 LVLPTWMNXXXXXXXXXXXXXSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
             +V P WM+             S+FF KMP +HYM ++ +++    DD+P  + +RT+IKD
Sbjct:    60 IVPPEWMDMDILEEIKEEEKRSKFFTKMPCEHYMVVAQLVMSTAPDDVPRCEELRTVIKD 119

Query:   121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLD 166
             I+D+R SKLR+SID F+K  G +A L++LT  EI+S+R IL   LD
Sbjct:   120 IFDIRESKLRTSIDAFIKGEGTYAKLDNLTLLEIHSVRPILPYSLD 165

GO:0006271 "DNA strand elongation involved in DNA replication" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0000811 "GINS complex" evidence=IDA

GO:0043138 "3'-5' DNA helicase activity" evidence=IDA

GO:0045750 "positive regulation of S phase of mitotic cell cycle" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

GO:0030261 "chromosome condensation" evidence=IMP

WB|WBGene00009287 F31C3.5 [Caenorhabditis elegans (taxid:6239)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 60/162 (37%), Positives = 98/162 (60%)

Query:     1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
             M+    EFIA +  +E+IP  +    IHLISGD+GPF AG+P ++P+W AI +K++  C+
Sbjct:     1 MNAERCEFIAGNSLIEVIPSISDDRPIHLISGDIGPFEAGVPCRIPVWTAILMKRKHNCK 60

Query:    61 LVLPTWMNXXXXXXXXXXXXXSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
             +V P WM+             S+   K+P DH+ E+SH+++    +DI  V+ +++L++D
Sbjct:    61 VVAPQWMDVDELKKILTSETESQGLAKLP-DHFFEISHMLVRDAREDIFEVEAVKSLVQD 119

Query:   121 IWDLRISKLRSSIDTFVKSGGG-HATLNHLTQFEINSIRNIL 161
             I+D R +KLRSS   F++     HA L+++   E +S R  L
Sbjct:   120 IYDRRDAKLRSSAIEFLRQNQTCHAQLDNVQLIEASSARATL 161

GO:0005634 "nucleus" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0001703 "gastrulation with mouth forming first" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54BL9	PSF2_DICDI	No assigned EC number	0.3765	0.8105	0.6905	yes	N/A
P0CQ30	PSF2_CRYNJ	No assigned EC number	0.3823	0.7	0.7189	yes	N/A
Q7ZT46	PSF2_XENLA	No assigned EC number	0.5058	0.9	0.9243	N/A	N/A
Q6CRT8	PSF2_KLULA	No assigned EC number	0.2690	0.8789	0.8308	yes	N/A
O62193	PSF2_CAEEL	No assigned EC number	0.3888	0.8421	0.8888	yes	N/A
Q9VQY9	PSF2_DROME	No assigned EC number	0.5174	0.9	0.8423	yes	N/A
Q6BZ44	PSF2_DEBHA	No assigned EC number	0.3121	0.8736	0.8058	yes	N/A
Q75A06	PSF2_ASHGO	No assigned EC number	0.2487	0.8894	0.8009	yes	N/A
Q9C7A8	PSF2_ARATH	No assigned EC number	0.3563	0.9736	0.8809	yes	N/A
O94329	PSF2_SCHPO	No assigned EC number	0.3254	0.8631	0.8961	yes	N/A
Q9Y248	PSF2_HUMAN	No assigned EC number	0.5174	0.9	0.9243	yes	N/A
Q9D600	PSF2_MOUSE	No assigned EC number	0.5232	0.9	0.9243	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	190
cd11712	119	cd11712, GINS_A_psf2, Alpha-helical domain of GINS	9e-46
COG5093	185	COG5093, COG5093, Uncharacterized conserved protei	8e-26
pfam05916	106	pfam05916, Sld5, GINS complex protein	6e-16

>gnl|CDD|212550 cd11712, GINS_A_psf2, Alpha-helical domain of GINS complex protein Psf2 (partner of Sld5 2)

 Score =  146 bits (371), Expect = 9e-46
 Identities = 55/119 (46%), Positives = 80/119 (67%), Gaps = 1/119 (0%)

Query: 56  RQKCRLVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIR 115
           R KCR+V P W+ +E L EI EEEKKS  F  +P  HY+E++ ++L++ +DDIP+ D IR
Sbjct: 1   RNKCRIVPPDWLTVEYLKEILEEEKKSETFSPLP-FHYLEIAKLLLEVASDDIPDADEIR 59

Query: 116 TLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKDK 174
           +L++DI D+R +KLRS ++  + SG  HA L++LT  EIN IR  L   LD +  L+  
Sbjct: 60  SLVEDIRDVRQAKLRSGLEKLLGSGEVHAKLDNLTAMEINEIRPFLSGALDKLRKLRAS 118

Psf2 is a component of GINS tetrameric protein complex and has been found to play important roles in normal eye development in Xenopus laevis. GINS is a complex of four subunits (Sld5, Psf1, Psf2 and Psf3) that is involved in both initiation and elongation stages of eukaryotic chromosome replication. Besides being essential for the maintenance of genomic integrity, GINS plays a central role in coordinating DNA replication with cell cycle checkpoints and is involved in cell growth. The eukaryotic GINS subunits are homologous and homologs are also found in the archaea; the complex is not found in bacteria. The four subunits of the complex consist of two domains each, termed the alpha-helical (A) and beta-strand (B) domains. The A and B domains of Sld5/Psf1 are permuted with respect to Psf1/Psf3. Length = 119

>gnl|CDD|227424 COG5093, COG5093, Uncharacterized conserved protein [Function unknown]

 Score = 97.7 bits (243), Expect = 8e-26
 Identities = 52/172 (30%), Positives = 94/172 (54%), Gaps = 5/172 (2%)

Query: 3   PAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLV 62
           P EI FIA ++ +EI P      L  L      P      A+VPLW A+ LK++  C++V
Sbjct: 13  PEEILFIAYNELIEIEPMTTIPQLRLLERATYPPMMPLDIARVPLWAALLLKKQNMCKIV 72

Query: 63  LPTWMNLETL-TEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDI 121
           LP+W+ LE+L   I  E +K+  F ++P  +++ ++  +L+   DD+ +++  R +++DI
Sbjct: 73  LPSWLQLESLKMSIDVEIEKADEFSELPP-YWLPLATELLNENCDDVEDIEESRMIVEDI 131

Query: 122 WDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKD 173
            ++R +K    +            L++LT FEIN IR ++ + +D    ++D
Sbjct: 132 REIRQAKTLKGLKCL---NEKALNLDNLTLFEINEIRPLILESMDVGRRIED 180

Length = 185

>gnl|CDD|218810 pfam05916, Sld5, GINS complex protein

 Score = 69.5 bits (170), Expect = 6e-16
 Identities = 24/115 (20%), Positives = 51/115 (44%), Gaps = 12/115 (10%)

Query: 43  AKVPLWLAINLKQRQKCRLVLPTWMNLETLTEIKEEEKKSRF---FIKMPSDHYMEMSHI 99
            ++PLWLA  L +R    +  P  ++LE L  +K E K         K+P  ++ E++ +
Sbjct: 1   PELPLWLAEELVERVLVEIEAPDELSLEVLNALKAEPKNVDTKLQLSKLPP-YFYELAEL 59

Query: 100 ILDIGADDIPNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEI 154
           +L++           + L+++   +R+ K+                L++L++ E 
Sbjct: 60  LLELLR--------NKRLLREYLRIRLRKIEKLAWHLAGGNESEDLLDNLSEEER 106

The eukaryotic GINS complex is essential for the initiation and elongation phases of DNA replication. It consists of four paralogous protein subunits (Sld5, Psf1, Psf2 and Psf3), all of which are included in this family. The GINS complex is conserved from yeast to humans, and has been shown in human to bind directly to DNA primase. Length = 106

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	190
KOG4071|consensus	187		100.0
COG5093	185	Uncharacterized conserved protein [Function unknow	100.0
PTZ00362	479	hypothetical protein; Provisional	100.0
PF05916	108	Sld5: GINS complex protein; InterPro: IPR021151 DN	99.83
KOG1106|consensus	177		99.01
COG5138	168	Uncharacterized conserved protein [Function unknow	98.27
COG1711	223	DNA replication initiation complex subunit, GINS f	88.01

>KOG4071|consensus

Probab=100.00  E-value=4.7e-63  Score=402.82  Aligned_cols=177  Identities=47%  Similarity=0.884  Sum_probs=171.6

Q ss_pred             CCHHHHHHhhcCceEEEEecccccccccccccccCCCCCCCccchhHHHHHHhcccCcceeeCCCCCCHHHHHHHHHHhh
Q psy647            1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLVLPTWMNLETLTEIKEEEK   80 (190)
Q Consensus         1 m~p~E~eFlaE~e~I~IvP~f~~~~~~~li~g~~gPf~pg~~~~VPLWLAi~Lkk~~~C~I~~P~Wl~~~~L~~~~~~E~   80 (190)
                      |+|+|+||+|++++|+|+|++++ ++++||+|++|||.||.|+.||||+|+.||||++|+|+||.||+++.|+++.+.|+
T Consensus         3 ~~peeiefia~~eli~I~P~~S~-~~l~li~~d~gp~~p~~~~rVpLWlAllLKkq~kc~Iv~P~wm~~~~L~~i~d~E~   81 (187)
T KOG4071|consen    3 MSPEEIEFIAENELIEIIPNISM-DQLHLISGDIGPFNPGVPCRVPLWLALLLKKQNKCRIVPPEWMDVDELEKIRDVEK   81 (187)
T ss_pred             CCHHHHHHHhcccceeeccCCcc-hhhhhhcCCCcccCCCCcceehHHHHHHHhhccCceEeCcccccHHHHHHHHHHhh
Confidence            79999999999999999999999 99999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCccHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCceeeeCCCCHHHHHhhhHh
Q psy647           81 KSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNI  160 (190)
Q Consensus        81 ~~~~f~~LP~~~y~Eia~~Ll~~a~Ddi~~~~~ir~li~Di~~~R~~Klr~~~~~~~~~~~~~~~l~nLt~~Ein~iR~f  160 (190)
                      .+++|++|| +||+|+|++|+++|.||||+.++||++|+||||+|.+|+|+|++.|..+  .|+++||||+||+|++|||
T Consensus        82 e~~tfs~lp-~~~~ela~lL~n~a~Ddi~~~eeiR~lV~DI~d~R~aKlr~s~~~f~~~--~hakldNltLmEiN~~rpf  158 (187)
T KOG4071|consen   82 ESETFSKLP-FYYFELATLLLNFARDDIPDIEEIRTLVKDIRDIRLAKLRTSLDSFNRQ--AHAKLDNLTLMEINEIRPF  158 (187)
T ss_pred             cccccccCC-hHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhHHHHhhH--hhcCcccceeeeeccchHH
Confidence            988999999 7999999999999999999999999999999999999999999998543  7999999999999999999


Q ss_pred             HHHHHHHHHhhhcccCccccc
Q psy647          161 LCDVLDTMSSLKDKQCDVDVT  181 (190)
Q Consensus       161 ~~~~~~~~~~l~~~~~~~~~~  181 (190)
                      ++++||++++++++..+.+.+
T Consensus       159 l~~~l~~~~ki~~~s~~~~~~  179 (187)
T KOG4071|consen  159 LTEALDHGRKIRQTSKDQQEE  179 (187)
T ss_pred             HHHHHHHHHHHhhhhhhcccc
Confidence            999999999999888877766

>COG5093 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.8e-47  Score=304.84  Aligned_cols=170  Identities=29%  Similarity=0.532  Sum_probs=162.4

Q ss_pred             CCHHHHHHhhcCceEEEEecccccccccccc-cccCCCCCCCccchhHHHHHHhcccCcceeeCCCCCCHHHHHHHHHHh
Q psy647            1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLIS-GDVGPFRAGIPAKVPLWLAINLKQRQKCRLVLPTWMNLETLTEIKEEE   79 (190)
Q Consensus         1 m~p~E~eFlaE~e~I~IvP~f~~~~~~~li~-g~~gPf~pg~~~~VPLWLAi~Lkk~~~C~I~~P~Wl~~~~L~~~~~~E   79 (190)
                      .+|+|++|+|++|+|.|+|+.++ +.+.|++ .+|+|+.|...+.||||+|+.|||+++|+|++|.||+.+.|+..+..|
T Consensus        11 fSPEEi~fia~nE~i~I~P~~t~-~qlrL~~~~t~p~m~p~~~~rvpLw~ALlLKkqn~c~Iv~P~wl~~~~L~~~i~~e   89 (185)
T COG5093          11 FSPEEILFIAYNELIEIEPMTTI-PQLRLLERATYPPMMPLDIARVPLWAALLLKKQNMCKIVLPSWLQLESLKMSIDVE   89 (185)
T ss_pred             CCHHHHHHHhcccceeeeccccc-chhhhhhhhcCCCCCCchhhhhHHHHHHHHHhcccccccChhHhhHHHHHhhhhHH
Confidence            47999999999999999999999 9999999 599999999999999999999999999999999999999999988887


Q ss_pred             hc-cCCCCCCCCccHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCceeeeCCCCHHHHHhhh
Q psy647           80 KK-SRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIR  158 (190)
Q Consensus        80 ~~-~~~f~~LP~~~y~Eia~~Ll~~a~Ddi~~~~~ir~li~Di~~~R~~Klr~~~~~~~~~~~~~~~l~nLt~~Ein~iR  158 (190)
                      +. .+.|+.|| |||++.|+.||+.|.||+.+.+++|..|+||+++|++|.++|++.+   ++.++++||||.+|+|++|
T Consensus        90 ~~~~d~fSelp-~~wl~lA~~Lln~~~ddvediee~r~iv~dirEiRq~K~lkGlk~l---ne~~L~ldNl~l~EiNEir  165 (185)
T COG5093          90 IEKADEFSELP-PYWLPLATELLNENCDDVEDIEESRMIVEDIREIRQAKTLKGLKCL---NEKALNLDNLTLFEINEIR  165 (185)
T ss_pred             HhcccccccCC-chHHHHHHHHHHhccchHhHHHHHHHHHHHHHHHHHHHHHhhHhhh---hhhhcCccccchhhhhhhH
Confidence            76 79999999 8999999999999999999999999999999999999999999764   8899999999999999999


Q ss_pred             HhHHHHHHHHHhhhccc
Q psy647          159 NILCDVLDTMSSLKDKQ  175 (190)
Q Consensus       159 ~f~~~~~~~~~~l~~~~  175 (190)
                      |++.++||.+|+|.+..
T Consensus       166 p~i~e~md~~R~I~~~s  182 (185)
T COG5093         166 PLILESMDVGRRIEDLS  182 (185)
T ss_pred             HHHHHHHHHHHHHHhhh
Confidence            99999999999997654

>PTZ00362 hypothetical protein; Provisional

Probab=100.00  E-value=6.1e-43  Score=317.12  Aligned_cols=161  Identities=19%  Similarity=0.323  Sum_probs=141.5

Q ss_pred             hcCceEEEEeccccccc--cccccc-ccCCCCCCCccchhHHHHHHhcccCcceeeCCCCCCHHHHHHHHHHh-hccCCC
Q psy647           10 AEDQNVEIIPKFNHLNL--IHLISG-DVGPFRAGIPAKVPLWLAINLKQRQKCRLVLPTWMNLETLTEIKEEE-KKSRFF   85 (190)
Q Consensus        10 aE~e~I~IvP~f~~~~~--~~li~g-~~gPf~pg~~~~VPLWLAi~Lkk~~~C~I~~P~Wl~~~~L~~~~~~E-~~~~~f   85 (190)
                      |-+|+|-|-..+.. +.  +.+|+| ++|||+||.|++||||||++||++++|+|+||.||+++.|++++++| ++.+.|
T Consensus       282 al~eLvVvKalvDi-p~~~L~lI~G~digpfkag~~~~VPLWLAi~LKq~~KC~IvpP~Wm~ie~Lk~I~eeE~~~~~~F  360 (479)
T PTZ00362        282 ALDELVVVKALVDI-PYIDLSEIEGFDFKEMKSGERQWLPIYIAKELSHFGLVTVEFPFWFYIKNLKNIYEREFEDQNEL  360 (479)
T ss_pred             HhcceEEEEEecCC-CCCcceeeeccccCCcCCCCeeEEeeeehhhhcccCceEEeCcccccHHHHHHHHHHHhhCcccc
Confidence            55788887665555 32  478999 99999999999999999999999999999999999999999999999 678999


Q ss_pred             CCCCCccHHHHHHHHHhc-------CCCCCCC------hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCceeeeCCCCHH
Q psy647           86 IKMPSDHYMEMSHIILDI-------GADDIPN------VDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQF  152 (190)
Q Consensus        86 ~~LP~~~y~Eia~~Ll~~-------a~Ddi~~------~~~ir~li~Di~~~R~~Klr~~~~~~~~~~~~~~~l~nLt~~  152 (190)
                      ++||++||+|||++|+++       |+||+++      +++||++|+|||++|.+|+|+|++++ ...+.|++++|||.|
T Consensus       361 t~LP~p~y~EIa~lLl~~~~F~~~~a~edi~~~d~~~~~~kVR~LIeDIrd~R~~KIr~~Le~~-~~~ss~i~LdNLslm  439 (479)
T PTZ00362        361 TDLPSPYFFEISSMFLENNIFKKVTPIETIGQRTVYKYISKVAGLVEDIRYKRLKKIMNHLENQ-DVHSSIIYIDNLQIS  439 (479)
T ss_pred             ccCCchhHHHHHHHHHhcccccccCChhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhc-cccccEEEECCccHH
Confidence            999988999999999999       6777665      69999999999999999999999997 445689999999999


Q ss_pred             HHHhhhHhHHHHHHHHHhhhcccC
Q psy647          153 EINSIRNILCDVLDTMSSLKDKQC  176 (190)
Q Consensus       153 Ein~iR~f~~~~~~~~~~l~~~~~  176 (190)
                      |++.+|+    +|+.+.+...+.+
T Consensus       440 Ei~~Vn~----~Ls~f~k~d~~~~  459 (479)
T PTZ00362        440 ETYCVNQ----LLSVFFQYDKNLN  459 (479)
T ss_pred             HHHHHHH----HHHHHHHhccccc
Confidence            9999999    5666666644443

>PF05916 Sld5: GINS complex protein; InterPro: IPR021151 DNA replication in eukaryotes results from a highly coordinated interaction between proteins, often as part of protein complexes, and the DNA template

Probab=99.83  E-value=2.4e-20  Score=137.29  Aligned_cols=104  Identities=27%  Similarity=0.522  Sum_probs=90.4

Q ss_pred             cchhHHHHHHhcccCcceeeCCCCCCHHHHHHHHHHhhcc---CCCCCCCCccHHHHHHHHHhcCCCCCCChHHHHHHHH
Q psy647           43 AKVPLWLAINLKQRQKCRLVLPTWMNLETLTEIKEEEKKS---RFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIK  119 (190)
Q Consensus        43 ~~VPLWLAi~Lkk~~~C~I~~P~Wl~~~~L~~~~~~E~~~---~~f~~LP~~~y~Eia~~Ll~~a~Ddi~~~~~ir~li~  119 (190)
                      ++||+|+|..|++++.|+|++|+|+++++++.+.++|++.   ..|+++| +||+|.|.++++.+       +.++.++.
T Consensus         1 v~lP~w~a~~L~~~~~~~i~~p~~~~~~~~~~l~~e~~~~~~~~~l~~l~-~~f~~~~~~l~~~~-------~~ik~~l~   72 (108)
T PF05916_consen    1 VELPLWLAKELKKRNLVEIQPPDWFSIEYLNALEAEEKNNSNKVDLSKLP-PYFYELGEMLLELL-------ERIKRLLR   72 (108)
T ss_dssp             EEEEHHHHHHHHHTTSEEEE-TCCHCHHHHHHHHHHHCCCS-HCSCCTSS-TTHHHHHHHHHHHH-------HHHHHHHH
T ss_pred             CcCCcchHHHHHHcCCeeecCcHhhhHHHHHHHHhhhccccchhhhhcCC-hHHHHHHHHHHHHH-------HHHHHHHH
Confidence            5899999999999999999999999999977777777663   5999999 89999999999988       68999999


Q ss_pred             HHHHHHHHHHHhhHHHHH-hcCCceeeeCCCCHHHH
Q psy647          120 DIWDLRISKLRSSIDTFV-KSGGGHATLNHLTQFEI  154 (190)
Q Consensus       120 Di~~~R~~Klr~~~~~~~-~~~~~~~~l~nLt~~Ei  154 (190)
                      +++..|..||++++.... ..+.....++|||.+|.
T Consensus        73 ~~~~~R~~KI~~~~~~~~~~~~~~~~~~~~Ls~~Er  108 (108)
T PF05916_consen   73 DYLRIRLKKILSLAWHLLSGNDDPQEILENLSEEER  108 (108)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHCTTCHHHHTTS-HHHH
T ss_pred             HHHHHHHHHHHHHHHHhccccCCcHHHHccCCHhhC
Confidence            999999999999998752 33455668999999995

One of the key early steps leading to DNA replication is formation of the pre- replication complex, or pre-RC. The pre-RC is formed by the sequential binding of the origin recognition complex (ORC), Cdc6 and Cdt1 proteins, and the MCM complex. Activation of the pre-RC into the initiation complex (IC) is achieved via the action of S-phase kinases, eventually leading to the loading of the replication machinery. Recently, a novel replication complex, GINS (for Go, Ichi, Nii, and San; five, one, two, and three in Japanese), has been identified [, ]. The precise function of GINS is not known. However, genetic and two-hybrid interactions indicate that it mediates the loading of the enzymatic replication machinery at a step after the action of the S-phase kinases []. Furthermore, GINS may be a part of the replication machinery itself, since it is found associated with replicating DNA [, ]. Electron microscopy of GINS shows that it forms a ring-like structure [], reminiscent of the structure of PCNA [], the DNA polymerase delta replication clamp.This observation, coupled with the observed interactions for GINS, indicates that the complex may represent the replication clamp for DNA polymerase epsilon []. The GINS complex is essential for initiation of DNA replication in Xenopus egg extracts []. This 100 kDa stable complex includes Sld5, Psf1, Psf2, and Psf3. Homologues of these components are found also in other eukaryotes. ; PDB: 2EHO_L 2E9X_G 2Q9Q_H 3ANW_B.

>KOG1106|consensus

Probab=99.01  E-value=1e-09  Score=89.87  Aligned_cols=143  Identities=14%  Similarity=0.223  Sum_probs=107.6

Q ss_pred             HhhcCceEEEEecccccccccccccccCCCCCCCccchhHHHHHHhcccCcceeeCCCCCCHHHHHHHHHHhhccCCCCC
Q psy647            8 FIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLVLPTWMNLETLTEIKEEEKKSRFFIK   87 (190)
Q Consensus         8 FlaE~e~I~IvP~f~~~~~~~li~g~~gPf~pg~~~~VPLWLAi~Lkk~~~C~I~~P~Wl~~~~L~~~~~~E~~~~~f~~   87 (190)
                      ++|..+.|.+....++ .++.+++..--+..+|.+|++|+|||..|+..+-.+|.+|+.++...+..+.++ .+.-.+..
T Consensus        20 Ila~~~ki~ct~e~~i-~~lgfl~~~~~~~~~g~kVelP~wl~~~L~~~~~~si~lP~~fs~~~rn~i~Ad-p~~vdL~s   97 (177)
T KOG1106|consen   20 ILASGEKIPCTFETKI-PNLGFLQAPPRELPAGRKVELPYWLAEELAINQFVSILLPDIFSEKVRNVIKAD-PNKVDLRS   97 (177)
T ss_pred             HHhcCCcccceeeecC-CCCCccCCCcccCCCCCcccchHHHHHHHhhccceeecCchHHHHHHHHHHhcC-cceeeccc
Confidence            6899999999999999 999999877777899999999999999999999999999999998877666655 33345556


Q ss_pred             CCCccHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCC-ceeeeCCCCHHHHHhhhHh
Q psy647           88 MPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGG-GHATLNHLTQFEINSIRNI  160 (190)
Q Consensus        88 LP~~~y~Eia~~Ll~~a~Ddi~~~~~ir~li~Di~~~R~~Klr~~~~~~~~~~~-~~~~l~nLt~~Ein~iR~f  160 (190)
                      +- +|||+.|.+|+..-+++-     +..++-...-.|..-+.....+  +.+. ..-.+-.|+.||.+.++.-
T Consensus        98 ~~-phFY~fg~kl~~l~s~~~-----l~~~~se~l~~R~~~~l~~~~s--~~~~~~s~~~~rLD~~E~~l~~~~  163 (177)
T KOG1106|consen   98 LC-PHFYEFGMKLLPLDSGEN-----LGIILSETLRSRVREILDSSLS--ATNTQTSKFVERLDEMERKLFEAG  163 (177)
T ss_pred             cc-cHHHHHHHHHhhcccCcc-----hhHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHH
Confidence            65 899999999999888773     3333445555565555554433  1111 1125677888888776643

>COG5138 Uncharacterized conserved protein [Function unknown]

Probab=98.27  E-value=1.8e-06  Score=69.10  Aligned_cols=115  Identities=12%  Similarity=0.147  Sum_probs=91.5

Q ss_pred             HHhhcCceEEEEecccccccccccccccCCCCCCCccchhHHHHHHhcccCcceeeCCCCCCHHHHHHHHHHhhccCCCC
Q psy647            7 EFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLVLPTWMNLETLTEIKEEEKKSRFFI   86 (190)
Q Consensus         7 eFlaE~e~I~IvP~f~~~~~~~li~g~~gPf~pg~~~~VPLWLAi~Lkk~~~C~I~~P~Wl~~~~L~~~~~~E~~~~~f~   86 (190)
                      ..|+++..|.+....+. +++++++..=.|.-.|.++++|+|||-.|-...-..+.+|..|+-.-+.++.++    +.=.
T Consensus         8 diL~~~s~ipctf~~~I-pglG~l~~~gr~~p~n~kvelP~wLa~~Lainsfv~~l~p~~fs~~v~naika~----P~tv   82 (168)
T COG5138           8 DILLGESRIPCTFKHKI-PGLGFLGPRGRILPENRKVELPYWLASFLAINSFVCELGPGFFSESVLNAIKAK----PSTV   82 (168)
T ss_pred             HHhcCCCccceeeEeec-CCcccCCCCCcccCCCCeeechHHHHHHHHHhhhHHhcCcchHHHHHHHHHhcC----Ccee
Confidence            47899999999999999 999988866667888999999999999999988889999999999888888776    4434


Q ss_pred             CCCC--ccHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHh
Q psy647           87 KMPS--DHYMEMSHIILDIGADDIPNVDLIRTLIKDIWDLRISKLRS  131 (190)
Q Consensus        87 ~LP~--~~y~Eia~~Ll~~a~Ddi~~~~~ir~li~Di~~~R~~Klr~  131 (190)
                      +|.+  +|||-+|.+.+-.-+|+     ++-..+-...--|...+-+
T Consensus        83 dlrsI~~hff~lA~K~~mL~se~-----sLv~~~~e~l~~Ra~~~~~  124 (168)
T COG5138          83 DLRSICPHFFYLAEKYAMLLSEG-----SLVAGLPEFLYERAGDYSS  124 (168)
T ss_pred             ehhhcchHHHHHHHHHHHHhcCc-----hHhhhhHHHHHHHHHhhhc
Confidence            4433  79999999888777777     4444455555556555544

>COG1711 DNA replication initiation complex subunit, GINS family [Replication, recombination, and repair]

Probab=88.01  E-value=3.1  Score=35.71  Aligned_cols=88  Identities=22%  Similarity=0.275  Sum_probs=61.0

Q ss_pred             CCHHHHHHHHHHhhccCCCCCCCCccHHHHHHHHH---hcC-----CCCCCC------hHHHHHHHHHHHHHHHHHHHhh
Q psy647           67 MNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIIL---DIG-----ADDIPN------VDLIRTLIKDIWDLRISKLRSS  132 (190)
Q Consensus        67 l~~~~L~~~~~~E~~~~~f~~LP~~~y~Eia~~Ll---~~a-----~Ddi~~------~~~ir~li~Di~~~R~~Klr~~  132 (190)
                      |+++.|+.++..|+.+.+++.++--+|.+++.-+=   ..+     +.|+..      .+.+.+..+-|+..|+.|+-+.
T Consensus         1 m~i~eLR~~~~kErS~~~L~~Id~dFY~~v~~~I~eLe~~~~~~~~~~D~e~~~~~~~~et~~~~~r~ifqrR~~Kiv~~   80 (223)
T COG1711           1 MDIEELRRALYKERSQDGLTEIDEDFYRDVRSFIKELEDEAGRAEEARDIEKYLLTDRIETAKSDARSIFQRRYGKIVSR   80 (223)
T ss_pred             CCHHHHHHHHHHHhhhhhhhhcCHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999999999446656555432   222     233321      2467778889999999999875


Q ss_pred             HHHHHhcCCceeeeCCCCHHHHHhhh
Q psy647          133 IDTFVKSGGGHATLNHLTQFEINSIR  158 (190)
Q Consensus       133 ~~~~~~~~~~~~~l~nLt~~Ein~iR  158 (190)
                      ..-  ...  .-.+.|||..|-..+-
T Consensus        81 A~~--~~~--~~~~~~Lt~eEk~ly~  102 (223)
T COG1711          81 AIY--DVP--GETISNLTPEEKELYE  102 (223)
T ss_pred             HHH--hcc--ccchhcCCHHHHHHHH
Confidence            432  222  2348999999965443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	190
2e9x_B	185	The Crystal Structure Of Human Gins Core Complex Le		6e-45
2q9q_A	191	The Crystal Structure Of Full Length Human Gins Com		7e-45
2eho_C	186	Crystal Structure Of Human Gins Complex Length = 18		7e-41

>pdb|2E9X|B Chain B, The Crystal Structure Of Human Gins Core Complex Length = 185

Iteration: 1
 Score =  176 bits (446), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 85/172 (49%), Positives = 114/172 (66%), Gaps = 1/172 (0%)
Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           MD AE+EF+AE + V IIP F+ L+ I+LI GD+GPF  G+P +VPLWLAINLKQRQKCR
Sbjct: 1   MDAAEVEFLAEKELVTIIPNFS-LDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCR 59
Query: 61  LVLPTWMNXXXXXXXXXXXXXSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
           L+ P WM+                F  MPS +YME++ ++L+  +D+IP  D IRTL+KD
Sbjct: 60  LLPPEWMDVEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKD 119
Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
           +WD RI+KLR S D+FV+    HA L++LT  EIN+    L   L+ M  L+
Sbjct: 120 MWDTRIAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGTFLTQALNHMYKLR 171

>pdb|2Q9Q|A Chain A, The Crystal Structure Of Full Length Human Gins Complex Length = 191

Iteration: 1
 Score =  176 bits (446), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 85/172 (49%), Positives = 114/172 (66%), Gaps = 1/172 (0%)
Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           MD AE+EF+AE + V IIP F+ L+ I+LI GD+GPF  G+P +VPLWLAINLKQRQKCR
Sbjct: 7   MDAAEVEFLAEKELVTIIPNFS-LDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCR 65
Query: 61  LVLPTWMNXXXXXXXXXXXXXSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
           L+ P WM+                F  MPS +YME++ ++L+  +D+IP  D IRTL+KD
Sbjct: 66  LLPPEWMDVEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKD 125
Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
           +WD RI+KLR S D+FV+    HA L++LT  EIN+    L   L+ M  L+
Sbjct: 126 MWDTRIAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGTFLTQALNHMYKLR 177

>pdb|2EHO|C Chain C, Crystal Structure Of Human Gins Complex Length = 186

Iteration: 1
 Score =  162 bits (411), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 81/171 (47%), Positives = 109/171 (63%), Gaps = 1/171 (0%)
Query: 2   DPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRL 61
           D AE+EF+AE + V IIP F+ L+ I+LI GD+GPF  G+P +VPLWLAINLKQRQKCRL
Sbjct: 3   DAAEVEFLAEKELVTIIPNFS-LDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCRL 61
Query: 62  VLPTWMNXXXXXXXXXXXXXSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDI 121
           + P W +                F   PS +Y E++ ++L+  +D+IP  D IRTL+KD 
Sbjct: 62  LPPEWXDVEKLEKXRDHERKEETFTPXPSPYYXELTKLLLNHASDNIPKADEIRTLVKDX 121
Query: 122 WDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
           WD RI+KLR S D+FV+    HA L++LT  EIN+    L   L+    L+
Sbjct: 122 WDTRIAKLRVSADSFVRQQEAHAKLDNLTLXEINTSGTFLTQALNHXYKLR 172

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	190
2e9x_B	185	DNA replication complex GINS protein PSF2; eukaryo	2e-70

>2e9x_B DNA replication complex GINS protein PSF2; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.2 d.344.1.2 PDB: 2eho_C* 2q9q_A* Length = 185

 Score =  210 bits (537), Expect = 2e-70
 Identities = 89/175 (50%), Positives = 124/175 (70%), Gaps = 1/175 (0%)

Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           MD AE+EF+AE + V IIP F+ L+ I+LI GD+GPF  G+P +VPLWLAINLKQRQKCR
Sbjct: 1   MDAAEVEFLAEKELVTIIPNFS-LDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCR 59

Query: 61  LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
           L+ P WM++E L ++++ E+K   F  MPS +YME++ ++L+  +D+IP  D IRTL+KD
Sbjct: 60  LLPPEWMDVEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKD 119

Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKDKQ 175
           +WD RI+KLR S D+FV+    HA L++LT  EIN+    L   L+ M  L+   
Sbjct: 120 MWDTRIAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGTFLTQALNHMYKLRTNL 174

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	190
2e9x_B	185	DNA replication complex GINS protein PSF2; eukaryo	100.0
2e9x_C	219	GINS complex subunit 3; eukaryotic DNA replication	99.55
3anw_B	171	GINS23, putative uncharacterized protein; SLD5 sup	98.9
3anw_A	188	GINS51, putative uncharacterized protein; SLD5 sup	97.11

>2e9x_B DNA replication complex GINS protein PSF2; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.2 d.344.1.2 PDB: 2eho_C* 2q9q_A*

Probab=100.00  E-value=5.6e-67  Score=430.29  Aligned_cols=176  Identities=50%  Similarity=0.892  Sum_probs=169.5

Q ss_pred             CCHHHHHHhhcCceEEEEecccccccccccccccCCCCCCCccchhHHHHHHhcccCcceeeCCCCCCHHHHHHHHHHhh
Q psy647            1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLVLPTWMNLETLTEIKEEEK   80 (190)
Q Consensus         1 m~p~E~eFlaE~e~I~IvP~f~~~~~~~li~g~~gPf~pg~~~~VPLWLAi~Lkk~~~C~I~~P~Wl~~~~L~~~~~~E~   80 (190)
                      |||+|+||+||+++|+|+|+|++ ++++||+|+||||+||.|++||||||++||++++|+|+||+||++++|++++++|+
T Consensus         1 ~~p~EieFlae~e~I~IvP~f~~-~~~~lI~g~~gPf~p~~~~~VPLWLAl~Lkk~~kc~I~~P~Wl~~e~L~~~~~~E~   79 (185)
T 2e9x_B            1 MDAAEVEFLAEKELVTIIPNFSL-DKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCRLLPPEWMDVEKLEKMRDHER   79 (185)
T ss_dssp             CCHHHHHHHHTTSEEEEEESSCB-CCEEETTEEECCBCTTCCEEEEHHHHHHHHHTTSEEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHhcCCeEEEEeCCCC-CceeeeecccCCcCCCCcceeHHHHHHHHHhCCceEEECCcccCHHHHHHHHHHHh
Confidence            89999999999999999999999 99999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCccHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCceeeeCCCCHHHHHhhhHh
Q psy647           81 KSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNI  160 (190)
Q Consensus        81 ~~~~f~~LP~~~y~Eia~~Ll~~a~Ddi~~~~~ir~li~Di~~~R~~Klr~~~~~~~~~~~~~~~l~nLt~~Ein~iR~f  160 (190)
                      +++.|++||++||+|+|++||++|+||++++++||++|+|||++|++|+|+|++.+.+.++.+++++|||+||+|++|+|
T Consensus        80 ~~~~f~~lP~~~~~Eia~lLl~~a~dDi~~~~~ir~Li~DI~~vR~~Kir~~l~~l~~~~~~~~~l~nls~mEin~iR~f  159 (185)
T 2e9x_B           80 KEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKDMWDTRIAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGTF  159 (185)
T ss_dssp             HCSSCCCCSSTTHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTCCHHHHHHHHHH
T ss_pred             cccccccCCHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCccHHHHHHhHHH
Confidence            98899999933799999999999999999999999999999999999999999998776788999999999999999999


Q ss_pred             HHHHHHHHHhhhcccCc
Q psy647          161 LCDVLDTMSSLKDKQCD  177 (190)
Q Consensus       161 ~~~~~~~~~~l~~~~~~  177 (190)
                      ++++||++++|+++..+
T Consensus       160 ~~~~~~~l~~l~~~~~~  176 (185)
T 2e9x_B          160 LTQALNHMYKLRTNLQP  176 (185)
T ss_dssp             HHHHHHHHHHHTTSCC-
T ss_pred             HHHHHHHHHHHhccccc
Confidence            99999999999987755

>2e9x_C GINS complex subunit 3; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.3 d.344.1.4 PDB: 2eho_D* 2q9q_D*

Probab=99.55  E-value=3.6e-14  Score=118.84  Aligned_cols=148  Identities=15%  Similarity=0.193  Sum_probs=115.4

Q ss_pred             HHhhcCceEEEEeccccccccc--cccc---cc-CC-CCCCCccchhHHHHHHh--cccCcceeeCCCCCCHHHHHHHHH
Q psy647            7 EFIAEDQNVEIIPKFNHLNLIH--LISG---DV-GP-FRAGIPAKVPLWLAINL--KQRQKCRLVLPTWMNLETLTEIKE   77 (190)
Q Consensus         7 eFlaE~e~I~IvP~f~~~~~~~--li~g---~~-gP-f~pg~~~~VPLWLAi~L--kk~~~C~I~~P~Wl~~~~L~~~~~   77 (190)
                      .+||++|.|.++++... .++.  ++++   .- .. ..+|.++++|||||..|  .+++.|+|.+|+.++..+.+.+.+
T Consensus        27 dILa~~ekVpC~f~~~~-~~lG~~~Ld~~a~~~~~d~l~~G~kveLPlWLA~~L~~~~~~~v~i~~P~~y~~~~~~~L~A  105 (219)
T 2e9x_C           27 DILMSHEKLPVRTETAM-PRLGAFFLERSAGAETDNAVPQGSKLELPLWLAKGLFDNKRRILSVELPKIYQEGWRTVFSA  105 (219)
T ss_dssp             HHHHTTSEEEEEESSCB-TTCGGGC---------CCCBCTTCEEEEEHHHHHHHCCSSSSSEEECCCGGGSHHHHHHHHH
T ss_pred             HHHhcCCeeeeEEeecC-CCCcHhhcCCccCCCCcccCCCCCEecchHHHHHHHHHhccCceEEeCchhhhHHHHHHHhc
Confidence            58999999999999999 9998  7777   33 45 99999999999999999  999999999999999998887777


Q ss_pred             HhhccCCCCCCCCccHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCce-eeeCCCCHHHHHh
Q psy647           78 EEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGH-ATLNHLTQFEINS  156 (190)
Q Consensus        78 ~E~~~~~f~~LP~~~y~Eia~~Ll~~a~Ddi~~~~~ir~li~Di~~~R~~Klr~~~~~~~~~~~~~-~~l~nLt~~Ein~  156 (190)
                      + -..-.+..+. +|||+++..|+..-  . .+..++...+.+.+..|..+|.+...+.  .++.. -.+.+|+.+|...
T Consensus       106 d-p~~VdL~~~~-p~fY~lG~~L~~l~--~-~ed~~L~~~L~~tf~~R~~~I~d~a~~~--~~~~~~~~~~~Ld~~Er~L  178 (219)
T 2e9x_C          106 D-PNVVDLHKMG-PHFYGFGSQLLHFD--S-PENADISQSLLQTFIGRFRRIMDSSQNA--YNEDTSALVARLDEMERGL  178 (219)
T ss_dssp             C-GGGSCTTTSC-SSHHHHHHHGGGGC--C-TTHHHHHHHHHHHHHHHHHHHHHHHTTS--SCCCCHHHHTTCCHHHHHH
T ss_pred             C-CcEEecccCC-chHHHHHHHHHhcc--c-cchHHHHHHHHHHHHHHHHHHHHHhccc--ccccHHHHHhcCCHHHHHH
Confidence            7 2233455555 79999999999872  1 1225788888899999999999876541  12222 2689999999999


Q ss_pred             hhHhHH
Q psy647          157 IRNILC  162 (190)
Q Consensus       157 iR~f~~  162 (190)
                      ++..-.
T Consensus       179 f~~g~~  184 (219)
T 2e9x_C          179 FQTGQK  184 (219)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            996654

>3anw_B GINS23, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}

Probab=98.90  E-value=7.1e-09  Score=83.81  Aligned_cols=125  Identities=16%  Similarity=0.196  Sum_probs=92.9

Q ss_pred             ccCCCCCCCccchhHHHHHHhcccCcceeeCCCCCCHHHHHHHHHHhhccCCCCCCCCccHHHHHHHHHhc--------C
Q psy647           33 DVGPFRAGIPAKVPLWLAINLKQRQKCRLVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDI--------G  104 (190)
Q Consensus        33 ~~gPf~pg~~~~VPLWLAi~Lkk~~~C~I~~P~Wl~~~~L~~~~~~E~~~~~f~~LP~~~y~Eia~~Ll~~--------a  104 (190)
                      +||+.++|.-+.||.|+|..|...+.|.|.--.=-.++.|.+++.+|+++..+++|| ..||.=++..+..        .
T Consensus        22 ~f~~~~kG~e~~lp~wlA~~L~e~g~vei~d~~~~~I~eL~~il~eEr~~~~L~~LP-~dFY~rvr~yI~~Le~ei~~~~  100 (171)
T 3anw_B           22 PFGDWKSGDIVLVEDWKARELWEAGVVEIVDETDKIIGEIDKVIAEERESEPLTLLP-EGLYERAEFYAYYLENYVRLNP  100 (171)
T ss_dssp             CCTTCCSSCEEEEEHHHHHHHHHTTSEEECCTHHHHHHHHHHHHHHHTTSSSCCCCC-TTHHHHHHHHHHHHHHHTTCCC
T ss_pred             hhhhcCCCCeeeccHHHHHHHHHCCCEeeccccchHHHHHHHHHHHhhccCccccCC-HHHHHHHHHHHHHHHHHHHhcc
Confidence            689999999999999999999999999997411345889999999999999999999 5777777766541        1


Q ss_pred             CCCCCC-------hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCceeeeCCCCHHHHHhhhHhH
Q psy647          105 ADDIPN-------VDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNIL  161 (190)
Q Consensus       105 ~Ddi~~-------~~~ir~li~Di~~~R~~Klr~~~~~~~~~~~~~~~l~nLt~~Ein~iR~f~  161 (190)
                      ..|+..       ...++..+++|.+.|..||-+.+..  . ..+.--+++||..|...+....
T Consensus       101 ~~d~~~~~~kl~elk~~~~~l~~L~~~Ri~KIv~la~~--~-~~~~eil~rLTpEEk~iy~~l~  161 (171)
T 3anw_B          101 RESVDTINVKLTKLANLRKKLRDLKLIRFNKILKAVML--R-PNSLELLSRLAPEERRIYLQMS  161 (171)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCHHHHTTSCHHHHHHHHHHH
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--C-CCcHHHHhcCCHHHHHHHHHHH
Confidence            224322       3567777889999999999886521  1 2222248999999987766554

>3anw_A GINS51, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}

Probab=97.11  E-value=0.00098  Score=54.06  Aligned_cols=86  Identities=19%  Similarity=0.251  Sum_probs=63.0

Q ss_pred             CCHHHHHHHHHHhhccCCCCCCCCccHHHHHHHHHhcC-------CC-CC--C------ChHHHHHHHHHHHHHHHHHHH
Q psy647           67 MNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIG-------AD-DI--P------NVDLIRTLIKDIWDLRISKLR  130 (190)
Q Consensus        67 l~~~~L~~~~~~E~~~~~f~~LP~~~y~Eia~~Ll~~a-------~D-di--~------~~~~ir~li~Di~~~R~~Klr  130 (190)
                      |+++.|.+++..|+++..++++| +.||+=+..++..-       .| ..  .      ....++.+++.|+++|..||-
T Consensus         1 mdi~eL~~il~~Er~s~~L~~i~-~~FY~~v~~yI~~L~~~~~~~~~~~~~~e~~~~~~el~~~~~~~~~i~~~Rl~KIv   79 (188)
T 3anw_A            1 MDIVKLRELLEAELSSTDLNELD-EDFYVEFDSLIKALKLSAESSRERGEDVEERLYLAQLKIAESLMKEIIKLRLHKIV   79 (188)
T ss_dssp             CCHHHHHHHHHHHHTCSSCCCCC-TTHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhccCcCCCCC-HHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999 45554445544421       12 11  1      123488889999999999998


Q ss_pred             hhHHHHHhcCCceeeeCCCCHHHHHhhhHhH
Q psy647          131 SSIDTFVKSGGGHATLNHLTQFEINSIRNIL  161 (190)
Q Consensus       131 ~~~~~~~~~~~~~~~l~nLt~~Ein~iR~f~  161 (190)
                      ...-    .+    ..+|+|..|...+....
T Consensus        80 ~~a~----~~----~~~~Lt~EEk~l~~~l~  102 (188)
T 3anw_A           80 DLAV----EG----KIAEMTAEEKRLFNVIR  102 (188)
T ss_dssp             HHHH----HT----EECCCCHHHHHHHHHHH
T ss_pred             HHHh----hh----hhhhCCHHHHHHHHHHH
Confidence            7651    12    47999999998887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	190
d2e9xb1	112	a.278.1.2 (B:62-173) DNA replication complex GINS	2e-39
d2e9xb2	61	d.344.1.2 (B:1-61) DNA replication complex GINS pr	7e-28

>d2e9xb1 a.278.1.2 (B:62-173) DNA replication complex GINS protein PSF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 112

class: All alpha proteins
fold: GINS helical bundle-like
superfamily: GINS helical bundle-like
family: PSF2 C-terminal domain-like
domain: DNA replication complex GINS protein PSF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (323), Expect = 2e-39
 Identities = 48/110 (43%), Positives = 73/110 (66%)

Query: 64  PTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDIWD 123
           P WM++E L ++++ E+K   F  MPS +YME++ ++L+  +D+IP  D IRTL+KD+WD
Sbjct: 2   PEWMDVEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKDMWD 61

Query: 124 LRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKD 173
            RI+KLR S D+FV+    HA L++LT  EIN+    L   L+ M  L+ 
Sbjct: 62  TRIAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGTFLTQALNHMYKLRT 111

>d2e9xb2 d.344.1.2 (B:1-61) DNA replication complex GINS protein PSF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: Alpha and beta proteins (a+b)
fold: GINS/PriA/YqbF domain
superfamily: PriA/YqbF domain
family: PSF2 N-terminal domain-like
domain: DNA replication complex GINS protein PSF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.4 bits (243), Expect = 7e-28
 Identities = 41/62 (66%), Positives = 51/62 (82%), Gaps = 1/62 (1%)

Query: 1  MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
          MD AE+EF+AE + V IIP F+ L+ I+LI GD+GPF  G+P +VPLWLAINLKQRQKCR
Sbjct: 1  MDAAEVEFLAEKELVTIIPNFS-LDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCR 59

Query: 61 LV 62
          L+
Sbjct: 60 LL 61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	190
d2e9xb1	112	DNA replication complex GINS protein PSF2 {Human (	100.0
d2e9xb2	61	DNA replication complex GINS protein PSF2 {Human (	99.97
d2e9xc2	87	GINS complex subunit 3, PSF3 {Human (Homo sapiens)	98.32
d2e9xc1	105	GINS complex subunit 3, PSF3 {Human (Homo sapiens)	97.0

>d2e9xb1 a.278.1.2 (B:62-173) DNA replication complex GINS protein PSF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GINS helical bundle-like
superfamily: GINS helical bundle-like
family: PSF2 C-terminal domain-like
domain: DNA replication complex GINS protein PSF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-40  Score=250.39  Aligned_cols=112  Identities=43%  Similarity=0.785  Sum_probs=108.7

Q ss_pred             CCCCCCHHHHHHHHHHhhccCCCCCCCCccHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCc
Q psy647           63 LPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGG  142 (190)
Q Consensus        63 ~P~Wl~~~~L~~~~~~E~~~~~f~~LP~~~y~Eia~~Ll~~a~Ddi~~~~~ir~li~Di~~~R~~Klr~~~~~~~~~~~~  142 (190)
                      ||+||++++|+++++.|++++.|++||++||+|||++|+++|+||++++++||+||+|||++|++|||+|++.|.+.+++
T Consensus         1 PP~Wl~ve~L~~~~~~E~~~~~f~~lP~~~~~Eia~~ll~~a~ddi~~~~~vr~Lv~DI~~vR~~Klr~~~~~l~~~~~~   80 (112)
T d2e9xb1           1 PPEWMDVEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKDMWDTRIAKLRVSADSFVRQQEA   80 (112)
T ss_dssp             CCTTCCHHHHHHHHHHHHHCSSCCCCSSTTHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             CCccccHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            89999999999999999999999999977999999999999999999999999999999999999999999999888889


Q ss_pred             eeeeCCCCHHHHHhhhHhHHHHHHHHHhhhcc
Q psy647          143 HATLNHLTQFEINSIRNILCDVLDTMSSLKDK  174 (190)
Q Consensus       143 ~~~l~nLt~~Ein~iR~f~~~~~~~~~~l~~~  174 (190)
                      +++++|||+||+|.+|+|++++||++++|+.+
T Consensus        81 ~~~l~ni~~mEin~iR~f~~~~l~~l~~l~~n  112 (112)
T d2e9xb1          81 HAKLDNLTLMEINTSGTFLTQALNHMYKLRTN  112 (112)
T ss_dssp             EEECTTCCHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             eeeecchhHHHHHHhHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999864

>d2e9xb2 d.344.1.2 (B:1-61) DNA replication complex GINS protein PSF2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: GINS/PriA/YqbF domain
superfamily: PriA/YqbF domain
family: PSF2 N-terminal domain-like
domain: DNA replication complex GINS protein PSF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.1e-33  Score=189.49  Aligned_cols=61  Identities=66%  Similarity=1.158  Sum_probs=60.3

Q ss_pred             CCHHHHHHhhcCceEEEEecccccccccccccccCCCCCCCccchhHHHHHHhcccCcceee
Q psy647            1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLV   62 (190)
Q Consensus         1 m~p~E~eFlaE~e~I~IvP~f~~~~~~~li~g~~gPf~pg~~~~VPLWLAi~Lkk~~~C~I~   62 (190)
                      |+|+|+||+||||+|+|+|+|++ ++++||+|+||||+||.|++||||||++||||++|+|+
T Consensus         1 m~P~E~eFlae~e~v~IvP~~~~-~~~~li~g~~gpf~p~~p~~VPLWlAl~LK~q~kC~IV   61 (61)
T d2e9xb2           1 MDAAEVEFLAEKELVTIIPNFSL-DKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCRLL   61 (61)
T ss_dssp             CCHHHHHHHHTTSEEEEEESSCB-CCEEETTEEECCBCTTCCEEEEHHHHHHHHHTTSEEEC
T ss_pred             CCHHHhhhhhcCCeEEEEcCccc-CceEeeccccCCcCCCCccccHHHHHHHHhccCceeEC
Confidence            89999999999999999999999 99999999999999999999999999999999999996

>d2e9xc2 d.344.1.4 (C:1001-1087) GINS complex subunit 3, PSF3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: GINS/PriA/YqbF domain
superfamily: PriA/YqbF domain
family: PSF3 N-terminal domain-like
domain: GINS complex subunit 3, PSF3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.9e-07  Score=66.05  Aligned_cols=51  Identities=14%  Similarity=0.352  Sum_probs=41.1

Q ss_pred             HHhhcCceEEEEeccccccccc--cccccc-----CCCCCCCccchhHHHHHHhcccCc
Q psy647            7 EFIAEDQNVEIIPKFNHLNLIH--LISGDV-----GPFRAGIPAKVPLWLAINLKQRQK   58 (190)
Q Consensus         7 eFlaE~e~I~IvP~f~~~~~~~--li~g~~-----gPf~pg~~~~VPLWLAi~Lkk~~~   58 (190)
                      .+||++|.|.++.+... .+++  ++++..     ++..+|.++++|||||..|..|++
T Consensus        24 DILa~~EkvPc~f~~~~-p~LG~~~Ld~~~~~~~~~~i~~GskveLPLWLA~~L~~r~r   81 (87)
T d2e9xc2          24 DILMSHEKLPVRTETAM-PRLGAFFLERSAGAETDNAVPQGSKLELPLWLAKGLFDNKR   81 (87)
T ss_dssp             HHHHTTSEEEEEESSCB-TTCGGGC---------CCCBCTTCEEEEEHHHHHHHCCSSS
T ss_pred             HHhhcCCcccEEEEecC-cccchhhcCCCCCccccccCCCCCCccchHHHHHHHhhcCc
Confidence            58999999999999999 8887  676543     469999999999999999976654

>d2e9xc1 a.278.1.3 (C:1088-1192) GINS complex subunit 3, PSF3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GINS helical bundle-like
superfamily: GINS helical bundle-like
family: PSF3 C-terminal domain-like
domain: GINS complex subunit 3, PSF3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00077  Score=48.14  Aligned_cols=90  Identities=11%  Similarity=0.120  Sum_probs=67.3

Q ss_pred             CCCCCCHHHHHHHHHHhhccCCCCCCCC--ccHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHhhHHHHHhcC
Q psy647           63 LPTWMNLETLTEIKEEEKKSRFFIKMPS--DHYMEMSHIILDIGADDIPNVDLIRTLIKDIWDLRISKLRSSIDTFVKSG  140 (190)
Q Consensus        63 ~P~Wl~~~~L~~~~~~E~~~~~f~~LP~--~~y~Eia~~Ll~~a~Ddi~~~~~ir~li~Di~~~R~~Klr~~~~~~~~~~  140 (190)
                      .|+-|+..+.+.+.++    +.-.+|.+  ||||++|..++..-.++   ..++...|.+.+..|..+|.+...+.  .+
T Consensus         1 lP~~f~~~v~~alkAD----p~~VdL~~~~p~fY~lg~~l~~l~~~e---~~~l~~~L~~tf~~R~~~I~d~a~n~--~~   71 (105)
T d2e9xc1           1 LPKIYQEGWRTVFSAD----PNVVDLHKMGPHFYGFGSQLLHFDSPE---NADISQSLLQTFIGRFRRIMDSSQNA--YN   71 (105)
T ss_dssp             CCGGGSHHHHHHHHHC----GGGSCTTTSCSSHHHHHHHGGGGCCTT---HHHHHHHHHHHHHHHHHHHHHHHTTS--SC
T ss_pred             CChhHhHHHHHHHhcC----CCeechhhcCcHHHHHHHHHHHHcccc---hHHHHHHHHHHHHHHHHHHHHHhccc--cc
Confidence            4888888888888776    55555542  89999999999876543   23688889999999999998766541  23


Q ss_pred             Ccee-eeCCCCHHHHHhhhHhH
Q psy647          141 GGHA-TLNHLTQFEINSIRNIL  161 (190)
Q Consensus       141 ~~~~-~l~nLt~~Ein~iR~f~  161 (190)
                      +... .+..|+.+|...+|.--
T Consensus        72 ~~~~~~~~~Lde~Er~Lf~~g~   93 (105)
T d2e9xc1          72 EDTSALVARLDEMERGLFQTGQ   93 (105)
T ss_dssp             CCCHHHHTTCCHHHHHHHHHHH
T ss_pred             CchHHHHHhCCHHHHHHHHHHH
Confidence            3333 56889999999888754