Psyllid ID: psy648

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--
Protein Sequence
MAAVHREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRIEYLEARKSHG
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHEcccc
Coil and Loop (DISEMBL)
MAAVHREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRIEYLEARKSHG
Flexible Loop (DISEMBL)
MAAVHREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRIEYLEARKSHG
Low Complexity Region (SEG)
MAAVHREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRIEYLEARKSHG
Disordered region (IsUnstruct)
***********QIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRIEYL*******
Disordered Region (DISOPRED)
***************DWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRIEYLEARKS**
Disordered Region (DISEMBL)
**********KQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRIEYLEARKSHG
Disordered Region (DISPRO)
*******AIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRIEYLEARK***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAAVHREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRxxxxxxxxxxxxxxxxxxxxxKSHG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	72	2.2.26 [Sep-21-2011]
A2BD66	75	Probable protein BRICK1-B	N/A	N/A	0.972	0.933	0.757	5e-26
Q91VR8	75	Protein BRICK1 OS=Mus mus	yes	N/A	0.972	0.933	0.757	2e-25
Q8WUW1	75	Protein BRICK1 OS=Homo sa	yes	N/A	0.972	0.933	0.757	2e-25
Q6P7G6	75	Probable protein BRICK1-A	N/A	N/A	0.972	0.933	0.742	3e-25
Q6IQ86	75	Probable protein BRICK1 O	yes	N/A	0.972	0.933	0.742	3e-25
Q54X65	68	Protein BRICK1 OS=Dictyos	yes	N/A	0.763	0.808	0.545	8e-12
Q84VA7	86	Probable protein BRICK1 O	yes	N/A	0.805	0.674	0.465	5e-09
Q94JY4	85	Protein BRICK 1 OS=Arabid	yes	N/A	0.805	0.682	0.465	7e-09
Q8RW98	84	Protein BRICK1 OS=Zea may	N/A	N/A	0.777	0.666	0.464	9e-09

>sp|A2BD66|BRK1B_XENLA Probable protein BRICK1-B OS=Xenopus laevis GN=brk1-b PE=3 SV=1

 Score =  116 bits (290), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 53/70 (75%), Positives = 60/70 (85%)

Query: 3  AVHREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRI 62
          A   + +Q++I QDWANREYIE+IT SIKKI DFLNSFDMSCRSRLA LNEKLTTLERRI
Sbjct: 2  ASQEDPVQREIHQDWANREYIEVITSSIKKIADFLNSFDMSCRSRLATLNEKLTTLERRI 61

Query: 63 EYLEARKSHG 72
          EY+EAR + G
Sbjct: 62 EYIEARVTKG 71

Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2/3 complex.
Xenopus laevis (taxid: 8355)

>sp|Q91VR8|BRK1_MOUSE Protein BRICK1 OS=Mus musculus GN=Brk1 PE=2 SV=1

 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/70 (75%), Positives = 60/70 (85%)

Query: 3  AVHREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRI 62
          A   + +Q++I QDWANREYIEIIT SIKKI+DFLNSFDMSCRSRLA LNEKLT LERRI
Sbjct: 2  AGQEDPVQREIHQDWANREYIEIITSSIKKISDFLNSFDMSCRSRLATLNEKLTALERRI 61

Query: 63 EYLEARKSHG 72
          EY+EAR + G
Sbjct: 62 EYIEARVTKG 71

Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2/3 complex.

Mus musculus (taxid: 10090)

>sp|Q8WUW1|BRK1_HUMAN Protein BRICK1 OS=Homo sapiens GN=BRK1 PE=1 SV=1

 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/70 (75%), Positives = 59/70 (84%)

Query: 3  AVHREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRI 62
          A   + +Q++I QDWANREYIEIIT SIKKI DFLNSFDMSCRSRLA LNEKLT LERRI
Sbjct: 2  AGQEDPVQREIHQDWANREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRI 61

Query: 63 EYLEARKSHG 72
          EY+EAR + G
Sbjct: 62 EYIEARVTKG 71

Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2/3 complex.

Homo sapiens (taxid: 9606)

>sp|Q6P7G6|BRK1A_XENLA Probable protein BRICK1-A OS=Xenopus laevis GN=brk1-a PE=3 SV=1

 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 52/70 (74%), Positives = 59/70 (84%)

Query: 3  AVHREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRI 62
          A   + +Q++I QDWANREYIE+IT SIKKI DFLNSFDMSCRSRLA LNEKLT LERRI
Sbjct: 2  ASQDDPVQREIHQDWANREYIEVITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRI 61

Query: 63 EYLEARKSHG 72
          EY+EAR + G
Sbjct: 62 EYIEARVTKG 71

Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2/3 complex.

Xenopus laevis (taxid: 8355)

>sp|Q6IQ86|BRK1_DANRE Probable protein BRICK1 OS=Danio rerio GN=brk1 PE=2 SV=1

 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 52/70 (74%), Positives = 59/70 (84%)

Query: 3  AVHREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRI 62
          A   + +Q++I QDWANREYIE+IT SIKKI DFLNSFDMSCRSRLA LNEKLT LERRI
Sbjct: 2  AGQEDPVQREIHQDWANREYIEVITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRI 61

Query: 63 EYLEARKSHG 72
          EY+EAR + G
Sbjct: 62 EYIEARVTKG 71

Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2/3 complex.

Danio rerio (taxid: 7955)

>sp|Q54X65|BRK1_DICDI Protein BRICK1 OS=Dictyostelium discoideum GN=brk1 PE=1 SV=1

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 46/55 (83%)

Query: 13 IQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRIEYLEA 67
          IQ+DW  RE+IE ++ +I+KI +FLN F++S R++L+ LNEKLT L+R+++YLEA
Sbjct: 7  IQKDWEQREFIEDMSINIQKIVEFLNKFELSTRNKLSDLNEKLTILDRQVDYLEA 61

Involved in regulation of actin and microtubule organization.

Dictyostelium discoideum (taxid: 44689)

>sp|Q84VA7|BRK1_ORYSJ Probable protein BRICK1 OS=Oryza sativa subsp. japonica GN=Os02g0829900 PE=3 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 42/58 (72%)

Query: 13 IQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRIEYLEARKS 70
          +Q DW NRE+I  I+ +++++ DFL  F+ + +S+LA LNEKL  LER++E LE + S
Sbjct: 19 VQADWENREFISNISLNVRRLFDFLLRFEATTKSKLASLNEKLDILERKLEVLEVQVS 76

Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2/3 complex.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q94JY4|BRK1_ARATH Protein BRICK 1 OS=Arabidopsis thaliana GN=BRK1 PE=1 SV=1

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 42/58 (72%)

Query: 13 IQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRIEYLEARKS 70
          +Q DW NRE+I  I+ +++++ +FL  F+ + +S+LA LNEKL  LERR+E LE + S
Sbjct: 17 VQADWENREFISHISLNVRRLFEFLVQFESTTKSKLASLNEKLDLLERRLEMLEVQVS 74

Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2/3 complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RW98|BRK1_MAIZE Protein BRICK1 OS=Zea mays GN=BRK1 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 41/56 (73%)

Query: 13 IQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRIEYLEAR 68
          +Q DW NRE+I  I+ +++++ DFL  F+ + +S+LA LNEKL  LER++E LE +
Sbjct: 17 VQADWENREFISNISLNVRRLFDFLLRFEATTKSKLASLNEKLDILERKLEVLEVQ 72

Promotes multiple, actin-dependent cell polarization events in the developing leaf epidermis. Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2/3 complex.

Zea mays (taxid: 4577)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
149689064	76	syntaxin interacting protein 1 [Triatoma	1.0	0.947	0.930	5e-32
340721584	76	PREDICTED: probable protein BRICK1-B-lik	1.0	0.947	0.916	4e-31
332020711	76	Putative protein BRICK1-B [Acromyrmex ec	1.0	0.947	0.902	7e-31
322793001	70	hypothetical protein SINV_09386 [Solenop	0.930	0.957	0.955	2e-30
307213878	77	Probable protein BRICK1-B [Harpegnathos	0.930	0.870	0.955	2e-30
242004458	76	conserved hypothetical protein [Pediculu	1.0	0.947	0.875	6e-30
156547929	76	PREDICTED: probable protein BRICK1 [Naso	1.0	0.947	0.888	1e-29
328722366	75	PREDICTED: probable protein BRICK1-B-lik	0.930	0.893	0.880	3e-28
195430874	76	GK21927 [Drosophila willistoni] gi|19415	1.0	0.947	0.833	5e-28
357606765	76	putative syntaxin interacting protein 1	1.0	0.947	0.819	2e-27

>gi|149689064|gb|ABR27847.1| syntaxin interacting protein 1 [Triatoma infestans]

 Score =  141 bits (355), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 67/72 (93%), Positives = 69/72 (95%)

Query: 1  MAAVHREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLER 60
          MA VHREAIQKQIQQDWANREYIE+ITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLER
Sbjct: 1  MAGVHREAIQKQIQQDWANREYIEVITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLER 60

Query: 61 RIEYLEARKSHG 72
          RIEYLEAR + G
Sbjct: 61 RIEYLEARVTKG 72

Source: Triatoma infestans

Species: Triatoma infestans

Genus: Triatoma

Family: Reduviidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340721584|ref|XP_003399198.1| PREDICTED: probable protein BRICK1-B-like [Bombus terrestris] gi|350406953|ref|XP_003487934.1| PREDICTED: probable protein BRICK1-B-like [Bombus impatiens] gi|380028911|ref|XP_003698127.1| PREDICTED: probable protein BRICK1-B-like [Apis florea] gi|383859664|ref|XP_003705312.1| PREDICTED: probable protein BRICK1-B-like [Megachile rotundata]

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 66/72 (91%), Positives = 69/72 (95%)

Query: 1  MAAVHREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLER 60
          MAAVHREAIQKQIQQDWANREYIE+ITGSIKKITDFLNSFDMSCRSR+AVLNEKLTTLER
Sbjct: 1  MAAVHREAIQKQIQQDWANREYIEVITGSIKKITDFLNSFDMSCRSRIAVLNEKLTTLER 60

Query: 61 RIEYLEARKSHG 72
          RIEYLEA  + G
Sbjct: 61 RIEYLEACVTKG 72

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020711|gb|EGI61116.1| Putative protein BRICK1-B [Acromyrmex echinatior]

 Score =  137 bits (346), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 65/72 (90%), Positives = 69/72 (95%)

Query: 1  MAAVHREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLER 60
          MAA+HREAIQKQIQQDWANREYIE+ITGSIKKITDFLNSFDMSCRSR+AVLNEKLTTLER
Sbjct: 1  MAAIHREAIQKQIQQDWANREYIEVITGSIKKITDFLNSFDMSCRSRIAVLNEKLTTLER 60

Query: 61 RIEYLEARKSHG 72
          RIEYLEA  + G
Sbjct: 61 RIEYLEACVTKG 72

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322793001|gb|EFZ16776.1| hypothetical protein SINV_09386 [Solenopsis invicta]

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/67 (95%), Positives = 67/67 (100%)

Query: 1  MAAVHREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLER 60
          MAA+HREAIQKQIQQDWANREYIE+ITGSIKKITDFLNSFDMSCRSR+AVLNEKLTTLER
Sbjct: 1  MAAIHREAIQKQIQQDWANREYIEVITGSIKKITDFLNSFDMSCRSRIAVLNEKLTTLER 60

Query: 61 RIEYLEA 67
          RIEYLEA
Sbjct: 61 RIEYLEA 67

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307213878|gb|EFN89139.1| Probable protein BRICK1-B [Harpegnathos saltator]

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/67 (95%), Positives = 67/67 (100%)

Query: 1  MAAVHREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLER 60
          MAA+HREAIQKQIQQDWANREYIE+ITGSIKKITDFLNSFDMSCRSR+AVLNEKLTTLER
Sbjct: 1  MAAIHREAIQKQIQQDWANREYIEVITGSIKKITDFLNSFDMSCRSRIAVLNEKLTTLER 60

Query: 61 RIEYLEA 67
          RIEYLEA
Sbjct: 61 RIEYLEA 67

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242004458|ref|XP_002423101.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212506047|gb|EEB10363.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  134 bits (338), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 63/72 (87%), Positives = 69/72 (95%)

Query: 1  MAAVHREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLER 60
          MA++HREAIQKQI+QDWANREYIE+ITGSIK+ITDFLNSFDMSCRSRLAVLNEKLT LER
Sbjct: 1  MASLHREAIQKQIEQDWANREYIELITGSIKRITDFLNSFDMSCRSRLAVLNEKLTILER 60

Query: 61 RIEYLEARKSHG 72
          RIEYLEAR + G
Sbjct: 61 RIEYLEARVTKG 72

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156547929|ref|XP_001601160.1| PREDICTED: probable protein BRICK1 [Nasonia vitripennis]

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 64/72 (88%), Positives = 67/72 (93%)

Query: 1  MAAVHREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLER 60
          M+  HREAIQKQIQQDWANREYIE+ITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLER
Sbjct: 1  MSTGHREAIQKQIQQDWANREYIEVITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLER 60

Query: 61 RIEYLEARKSHG 72
          RIEYLEA  + G
Sbjct: 61 RIEYLEACVTKG 72

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328722366|ref|XP_003247561.1| PREDICTED: probable protein BRICK1-B-like [Acyrthosiphon pisum]

 Score =  128 bits (322), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/67 (88%), Positives = 64/67 (95%)

Query: 6  REAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRIEYL 65
          +E +QKQIQQDWANREYIE+ITGSIKKITDFLNSFDMSCRSRLA+LNEKLTTLERRIEYL
Sbjct: 5  KEGVQKQIQQDWANREYIEVITGSIKKITDFLNSFDMSCRSRLAILNEKLTTLERRIEYL 64

Query: 66 EARKSHG 72
          EAR + G
Sbjct: 65 EARVTKG 71

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195430874|ref|XP_002063473.1| GK21927 [Drosophila willistoni] gi|194159558|gb|EDW74459.1| GK21927 [Drosophila willistoni]

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 60/72 (83%), Positives = 65/72 (90%)

Query: 1  MAAVHREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLER 60
          M+  HREAIQKQI QDWANREYIE+IT SIK+ITDFLNSFDMSCRSRLAVLNEKLTTLER
Sbjct: 1  MSGAHREAIQKQIHQDWANREYIEVITASIKRITDFLNSFDMSCRSRLAVLNEKLTTLER 60

Query: 61 RIEYLEARKSHG 72
          RI+YLEA  + G
Sbjct: 61 RIDYLEACVTQG 72

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357606765|gb|EHJ65206.1| putative syntaxin interacting protein 1 [Danaus plexippus]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/72 (81%), Positives = 64/72 (88%)

Query: 1  MAAVHREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLER 60
          MA   RE IQKQIQQDWANREYIE+ITGSIKKITDFLNSFDMSCRSRLA LNEKLT+LER
Sbjct: 1  MATPQRETIQKQIQQDWANREYIEVITGSIKKITDFLNSFDMSCRSRLATLNEKLTSLER 60

Query: 61 RIEYLEARKSHG 72
          +I+YLEA  + G
Sbjct: 61 KIDYLEACVTKG 72

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
FB|FBgn0061198	76	HSPC300 [Drosophila melanogast	1.0	0.947	0.819	7.3e-27
MGI|MGI:1915406	75	Brk1 "BRICK1, SCAR/WAVE actin-	0.972	0.933	0.757	6.8e-24
RGD|1598136	75	Brk1 "BRICK1, SCAR/WAVE actin-	0.972	0.933	0.757	6.8e-24
UNIPROTKB|Q8WUW1	75	BRK1 "Protein BRICK1" [Homo sa	0.972	0.933	0.757	8.7e-24
UNIPROTKB|A8YXX8	75	C22H3ORF10 "Uncharacterized pr	0.972	0.933	0.742	1.1e-23
UNIPROTKB|F1PCT1	104	BRK1 "Uncharacterized protein"	0.972	0.673	0.742	1.1e-23
UNIPROTKB|F2Z5S6	75	BRK1 "Uncharacterized protein"	0.972	0.933	0.742	1.1e-23
ZFIN|ZDB-GENE-040625-77	83	zgc:86903 "zgc:86903" [Danio r	0.972	0.843	0.746	1.8e-23
DICTYBASE|DDB_G0279175	68	hspc300 "SCAR regulatory compl	0.763	0.808	0.545	3.1e-12
TAIR|locus:2066055	85	BRK1 "BRICK1" [Arabidopsis tha	0.805	0.682	0.465	8.4e-10

FB|FBgn0061198 HSPC300 [Drosophila melanogaster (taxid:7227)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 59/72 (81%), Positives = 64/72 (88%)

Query:     1 MAAVHREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLER 60
             M+  HREAIQKQI QDWANREYIE+IT SIK+ITDFLNSFDMSCRSRLAVLNEKLT LER
Sbjct:     1 MSGAHREAIQKQIHQDWANREYIEVITASIKRITDFLNSFDMSCRSRLAVLNEKLTILER 60

Query:    61 RIEYLEARKSHG 72
             RI+YLEA  + G
Sbjct:    61 RIDYLEACVAQG 72

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0008582 "regulation of synaptic growth at neuromuscular junction" evidence=IMP

GO:0021551 "central nervous system morphogenesis" evidence=IMP

GO:0010592 "positive regulation of lamellipodium assembly" evidence=IMP

GO:0051491 "positive regulation of filopodium assembly" evidence=IMP

MGI|MGI:1915406 Brk1 "BRICK1, SCAR/WAVE actin-nucleating complex subunit" [Mus musculus (taxid:10090)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 53/70 (75%), Positives = 60/70 (85%)

Query:     3 AVHREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRI 62
             A   + +Q++I QDWANREYIEIIT SIKKI+DFLNSFDMSCRSRLA LNEKLT LERRI
Sbjct:     2 AGQEDPVQREIHQDWANREYIEIITSSIKKISDFLNSFDMSCRSRLATLNEKLTALERRI 61

Query:    63 EYLEARKSHG 72
             EY+EAR + G
Sbjct:    62 EYIEARVTKG 71

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IMP

GO:0030036 "actin cytoskeleton organization" evidence=IMP

GO:0048870 "cell motility" evidence=IMP

RGD|1598136 Brk1 "BRICK1, SCAR/WAVE actin-nucleating complex subunit" [Rattus norvegicus (taxid:10116)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 53/70 (75%), Positives = 60/70 (85%)

Query:     3 AVHREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRI 62
             A   + +Q++I QDWANREYIEIIT SIKKI+DFLNSFDMSCRSRLA LNEKLT LERRI
Sbjct:     2 AGQEDPVQREIHQDWANREYIEIITSSIKKISDFLNSFDMSCRSRLATLNEKLTALERRI 61

Query:    63 EYLEARKSHG 72
             EY+EAR + G
Sbjct:    62 EYIEARVTKG 71

GO:0001701 "in utero embryonic development" evidence=IEA;ISO

GO:0008284 "positive regulation of cell proliferation" evidence=IEA;ISO

GO:0030036 "actin cytoskeleton organization" evidence=IEA;ISO

GO:0048870 "cell motility" evidence=IEA;ISO

UNIPROTKB|Q8WUW1 BRK1 "Protein BRICK1" [Homo sapiens (taxid:9606)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 53/70 (75%), Positives = 59/70 (84%)

Query:     3 AVHREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRI 62
             A   + +Q++I QDWANREYIEIIT SIKKI DFLNSFDMSCRSRLA LNEKLT LERRI
Sbjct:     2 AGQEDPVQREIHQDWANREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRI 61

Query:    63 EYLEARKSHG 72
             EY+EAR + G
Sbjct:    62 EYIEARVTKG 71

GO:0005737 "cytoplasm" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0048870 "cell motility" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

UNIPROTKB|A8YXX8 C22H3ORF10 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 52/70 (74%), Positives = 59/70 (84%)

Query:     3 AVHREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRI 62
             A   + +Q++I QDWANREYIE+IT SIKKI DFLNSFDMSCRSRLA LNEKLT LERRI
Sbjct:     2 AGQEDPVQREIHQDWANREYIEVITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRI 61

Query:    63 EYLEARKSHG 72
             EY+EAR + G
Sbjct:    62 EYIEARVTKG 71

GO:0048870 "cell motility" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

UNIPROTKB|F1PCT1 BRK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 52/70 (74%), Positives = 59/70 (84%)

Query:     3 AVHREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRI 62
             A   + +Q++I QDWANREYIE+IT SIKKI DFLNSFDMSCRSRLA LNEKLT LERRI
Sbjct:     2 AGQEDPVQREIHQDWANREYIEVITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRI 61

Query:    63 EYLEARKSHG 72
             EY+EAR + G
Sbjct:    62 EYIEARVTKG 71

GO:0048870 "cell motility" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

UNIPROTKB|F2Z5S6 BRK1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 52/70 (74%), Positives = 59/70 (84%)

Query:     3 AVHREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRI 62
             A   + +Q++I QDWANREYIE+IT SIKKI DFLNSFDMSCRSRLA LNEKLT LERRI
Sbjct:     2 AGQEDPVQREIHQDWANREYIEVITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRI 61

Query:    63 EYLEARKSHG 72
             EY+EAR + G
Sbjct:    62 EYIEARVTKG 71

GO:0048870 "cell motility" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

ZFIN|ZDB-GENE-040625-77 zgc:86903 "zgc:86903" [Danio rerio (taxid:7955)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 53/71 (74%), Positives = 59/71 (83%)

Query:     3 AVHREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRI 62
             A   + +Q++I QDWANREYIE+IT SIKKI DFLNSFDMSCRSRLA LNEKLT LERRI
Sbjct:     2 AGQEDPVQREIHQDWANREYIEVITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRI 61

Query:    63 EYLEARKS-HG 72
             EY+EAR   HG
Sbjct:    62 EYIEARVCFHG 72

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

DICTYBASE|DDB_G0279175 hspc300 "SCAR regulatory complex subunit HSPC300" [Dictyostelium discoideum (taxid:44689)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 30/55 (54%), Positives = 46/55 (83%)

Query:    13 IQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRIEYLEA 67
             IQ+DW  RE+IE ++ +I+KI +FLN F++S R++L+ LNEKLT L+R+++YLEA
Sbjct:     7 IQKDWEQREFIEDMSINIQKIVEFLNKFELSTRNKLSDLNEKLTILDRQVDYLEA 61

GO:0031209 "SCAR complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008064 "regulation of actin polymerization or depolymerization" evidence=TAS

GO:0032433 "filopodium tip" evidence=IDA

GO:0031252 "cell leading edge" evidence=IDA

GO:0031143 "pseudopodium" evidence=IDA

GO:0005911 "cell-cell junction" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2066055 BRK1 "BRICK1" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 27/58 (46%), Positives = 42/58 (72%)

Query:    13 IQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRIEYLEARKS 70
             +Q DW NRE+I  I+ +++++ +FL  F+ + +S+LA LNEKL  LERR+E LE + S
Sbjct:    17 VQADWENREFISHISLNVRRLFEFLVQFESTTKSKLASLNEKLDLLERRLEMLEVQVS 74


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.132   0.367    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       72        72   0.00091  102 3  11 22  0.44    28
                                                     29  0.43    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  497 (53 KB)
  Total size of DFA:  91 KB (2067 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  9.67u 0.09s 9.76t   Elapsed:  00:00:05
  Total cpu time:  9.67u 0.09s 9.76t   Elapsed:  00:00:07
  Start:  Thu Aug 15 14:15:40 2013   End:  Thu Aug 15 14:15:47 2013

GO:0005737 "cytoplasm" evidence=ISM

GO:0007163 "establishment or maintenance of cell polarity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010090 "trichome morphogenesis" evidence=RCA;IMP

GO:0031209 "SCAR complex" evidence=TAS

GO:0045010 "actin nucleation" evidence=RCA;TAS

GO:0030041 "actin filament polymerization" evidence=TAS

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0071944 "cell periphery" evidence=IDA

GO:0042802 "identical protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8WUW1	BRK1_HUMAN	No assigned EC number	0.7571	0.9722	0.9333	yes	N/A
Q6IQ86	BRK1_DANRE	No assigned EC number	0.7428	0.9722	0.9333	yes	N/A
A2BD66	BRK1B_XENLA	No assigned EC number	0.7571	0.9722	0.9333	N/A	N/A
Q54X65	BRK1_DICDI	No assigned EC number	0.5454	0.7638	0.8088	yes	N/A
Q91VR8	BRK1_MOUSE	No assigned EC number	0.7571	0.9722	0.9333	yes	N/A
Q6P7G6	BRK1A_XENLA	No assigned EC number	0.7428	0.9722	0.9333	N/A	N/A
Q94JY4	BRK1_ARATH	No assigned EC number	0.4655	0.8055	0.6823	yes	N/A
Q84VA7	BRK1_ORYSJ	No assigned EC number	0.4655	0.8055	0.6744	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	72
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	6e-04

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 35.5 bits (82), Expect = 6e-04
 Identities = 13/34 (38%), Positives = 15/34 (44%)

Query: 34 TDFLNSFDMSCRSRLAVLNEKLTTLERRIEYLEA 67
            FLN F   C S+L      L  LE  +  LEA
Sbjct: 9  VQFLNRFSAVCESKLVEAERSLQQLETTLSLLEA 42

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	72
PF10152	148	DUF2360: Predicted coiled-coil domain-containing p	99.8
KOG4496|consensus	194		99.57
COG2960	103	Uncharacterized protein conserved in bacteria [Fun	94.36
PF10393	47	Matrilin_ccoil: Trimeric coiled-coil oligomerisati	94.36
PF04380	79	BMFP: Membrane fusogenic activity; InterPro: IPR00	90.9
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	90.9
TIGR01837	118	PHA_granule_1 poly(hydroxyalkanoate) granule-assoc	89.55
PF05597	132	Phasin: Poly(hydroxyalcanoate) granule associated	89.42
PF11471	60	Sugarporin_N: Maltoporin periplasmic N-terminal ex	89.18
PF10152	148	DUF2360: Predicted coiled-coil domain-containing p	88.43
PF04380	79	BMFP: Membrane fusogenic activity; InterPro: IPR00	88.26
TIGR02978	121	phageshock_pspC phage shock protein C. All members	84.89
PRK10697	118	DNA-binding transcriptional activator PspC; Provis	84.71

>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex

Probab=99.80  E-value=9e-20  Score=124.71  Aligned_cols=46  Identities=30%  Similarity=0.528  Sum_probs=45.3

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy648           26 ITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRIEYLEARKSH   71 (72)
Q Consensus        26 in~~I~~~~~FLN~F~~sc~~kLa~ln~KL~~LE~~L~~LEAklss   71 (72)
                      |||||.||++|||+|+.+||+||..++.|||++|++|.||||||+|
T Consensus         1 vN~Fi~~tv~fLN~F~~~cE~kL~~~e~~Lq~~E~~l~iLEaKL~S   46 (148)
T PF10152_consen    1 VNHFIVHTVQFLNRFASVCEEKLSDMEQRLQRLEATLNILEAKLSS   46 (148)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            6999999999999999999999999999999999999999999988

The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.

>KOG4496|consensus

Probab=99.57  E-value=9e-15  Score=104.62  Aligned_cols=54  Identities=22%  Similarity=0.407  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy648           18 ANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRIEYLEARKSH   71 (72)
Q Consensus        18 ~nRe~i~~in~~I~~~~~FLN~F~~sc~~kLa~ln~KL~~LE~~L~~LEAklss   71 (72)
                      ++.+.++|+|+||+|+++|||+|.+.|+.+|+.++.+|++.||+|++|||||++
T Consensus        20 dh~RTaaf~N~fimh~tefLN~F~n~cEd~Lad~elridq~d~kLnildaKLa~   73 (194)
T KOG4496|consen   20 DHHRTAAFFNCFIMHMTEFLNNFGNKCEDILADAELRIDQADRKLNILDAKLAG   73 (194)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            356788999999999999999999999999999999999999999999999986

>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.36  E-value=0.86  Score=30.58  Aligned_cols=68  Identities=34%  Similarity=0.374  Sum_probs=50.3

Q ss_pred             HhHHHHHHHHHhhhHH--HHHHHHHHHhHHHHH-HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhcc
Q psy648            4 VHREAIQKQIQQDWAN--REYIEIITGSIKKIT-DFLNSFDMSCRSR-------LAVLNEKLTTLERRIEYLEARKSH   71 (72)
Q Consensus         4 ~~~~~v~~~iq~DW~n--Re~i~~in~~I~~~~-~FLN~F~~sc~~k-------La~ln~KL~~LE~~L~~LEAklss   71 (72)
                      -+.+++..++..|-.+  +++-+-|-..|+-+. .-||+.|.+.|+-       |..--+||..||.++.-|||++++
T Consensus        14 ~~~e~~~~ql~e~~a~~~~~~~~evE~~~r~~~q~~lnkLDlVsREEFdvq~qvl~rtR~kl~~Leari~~LEarl~~   91 (103)
T COG2960          14 NRFEDIAAQLSEDAAGAAQEVRAEVEKAFRAQLQRQLNKLDLVSREEFDVQRQVLLRTREKLAALEARIEELEARLAS   91 (103)
T ss_pred             HHHHHHHHHHHHHccccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3567788888888877  566666666666554 4688888877765       445567899999999999999863

>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins

Probab=94.36  E-value=0.22  Score=28.97  Aligned_cols=33  Identities=36%  Similarity=0.510  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy648           37 LNSFDMSCRSRLAVLNEKLTTLERRIEYLEARK   69 (72)
Q Consensus        37 LN~F~~sc~~kLa~ln~KL~~LE~~L~~LEAkl   69 (72)
                      +-.|-....+.|.+|+.||..+.++|+-||.++
T Consensus        14 lv~FQ~~v~~~lq~Lt~kL~~vs~RLe~LEn~~   46 (47)
T PF10393_consen   14 LVAFQNKVTSALQSLTQKLDAVSKRLEALENRL   46 (47)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            345777888899999999999999999999876

It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.

>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS

Probab=90.90  E-value=0.48  Score=29.45  Aligned_cols=47  Identities=26%  Similarity=0.323  Sum_probs=27.6

Q ss_pred             HHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy648           23 IEIITGSIKKI-TDFLNSFDMSCRSRLAVLNEKLTTLERRIEYLEARK   69 (72)
Q Consensus        23 i~~in~~I~~~-~~FLN~F~~sc~~kLa~ln~KL~~LE~~L~~LEAkl   69 (72)
                      ..-+-.+|+.. -.+|++++.+.|+=+.....-|.++..+|+-||++|
T Consensus        26 ~~e~e~~~r~~l~~~l~kldlVtREEFd~q~~~L~~~r~kl~~LEarl   73 (79)
T PF04380_consen   26 REEIEKNIRARLQSALSKLDLVTREEFDAQKAVLARTREKLEALEARL   73 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344445443 357888888888877666555555444444444444

BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=90.90  E-value=2.3  Score=27.52  Aligned_cols=57  Identities=21%  Similarity=0.326  Sum_probs=38.9

Q ss_pred             HHHhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy648           12 QIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRIEYLEARKSH   71 (72)
Q Consensus        12 ~iq~DW~nRe~i~~in~~I~~~~~FLN~F~~sc~~kLa~ln~KL~~LE~~L~~LEAklss   71 (72)
                      .|+++|.=  +.+.+...+.-+.-.|.+ .-.-++.+..+.++++..+++|..+|.++..
T Consensus         4 ~~~~~w~i--i~a~~~~~~~~~~~~l~~-~~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~   60 (106)
T PF10805_consen    4 FIKKNWGI--IWAVFGIAGGIFWLWLRR-TYAKREDIEKLEERLDEHDRRLQALETKLEH   60 (106)
T ss_pred             HHHhCcHH--HHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46777765  455554444444444444 3345889999989999999999999988754

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein

Probab=89.55  E-value=2.8  Score=27.70  Aligned_cols=37  Identities=22%  Similarity=0.457  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy648           31 KKITDFLNSFDMSCRSRLAVLNEKLTTLERRIEYLEA   67 (72)
Q Consensus        31 ~~~~~FLN~F~~sc~~kLa~ln~KL~~LE~~L~~LEA   67 (72)
                      ..+-++|+++....++-+..|+.||..||++|.-|+.
T Consensus        81 ~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~~  117 (118)
T TIGR01837        81 ERVEQALNRLNIPSREEIEALSAKIEQLAVQVEELRR  117 (118)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4556889999999999999999999999999988763

This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.

>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material

Probab=89.42  E-value=3.1  Score=28.36  Aligned_cols=58  Identities=16%  Similarity=0.383  Sum_probs=47.0

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy648            6 REAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRIEYLEAR   68 (72)
Q Consensus         6 ~~~v~~~iq~DW~nRe~i~~in~~I~~~~~FLN~F~~sc~~kLa~ln~KL~~LE~~L~~LEAk   68 (72)
                      .+++...+..-|++=|     +.|=.+....||++..-.+.=+..|+.||..|++.|+-|..+
T Consensus        74 ~~~~~~~~~~~~dklE-----~~fd~rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l~~~  131 (132)
T PF05597_consen   74 VDDVKERATGQWDKLE-----QAFDERVARALNRLGVPSRKDVEALSARIDQLTAQVERLANK  131 (132)
T ss_pred             HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4567777888887533     345566788999999999999999999999999999988653

PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.

>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1

Probab=89.18  E-value=0.75  Score=27.67  Aligned_cols=30  Identities=33%  Similarity=0.498  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy648           41 DMSCRSRLAVLNEKLTTLERRIEYLEARKS   70 (72)
Q Consensus        41 ~~sc~~kLa~ln~KL~~LE~~L~~LEAkls   70 (72)
                      ..+-|.||+.|+.+|+..|.++.--|+++.
T Consensus        27 ~ltiEqRLa~LE~rL~~ae~ra~~ae~~~~   56 (60)
T PF11471_consen   27 PLTIEQRLAALEQRLQAAEQRAQAAEARAK   56 (60)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345689999999999999999988888765

B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.

>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex

Probab=88.43  E-value=1.1  Score=30.72  Aligned_cols=39  Identities=18%  Similarity=0.284  Sum_probs=28.1

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy648           22 YIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRIEY   64 (72)
Q Consensus        22 ~i~~in~~I~~~~~FLN~F~~sc~~kLa~ln~KL~~LE~~L~~   64 (72)
                      .+.|+|.|-...=+=|.++    +.||..++-+|..||++|.=
T Consensus         8 tv~fLN~F~~~cE~kL~~~----e~~Lq~~E~~l~iLEaKL~S   46 (148)
T PF10152_consen    8 TVQFLNRFASVCEEKLSDM----EQRLQRLEATLNILEAKLSS   46 (148)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhc
Confidence            4677888877666656544    46788888888888888753

The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.

>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS

Probab=88.26  E-value=1.2  Score=27.68  Aligned_cols=29  Identities=45%  Similarity=0.586  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy648           39 SFDMSCRSRLAVLNEKLTTLERRIEYLEAR   68 (72)
Q Consensus        39 ~F~~sc~~kLa~ln~KL~~LE~~L~~LEAk   68 (72)
                      .|+ .-..-|+.+.+||..||++|.-||++
T Consensus        51 EFd-~q~~~L~~~r~kl~~LEarl~~LE~~   79 (79)
T PF04380_consen   51 EFD-AQKAVLARTREKLEALEARLAALEAQ   79 (79)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            566 45677888889999999999999875

BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.

>TIGR02978 phageshock_pspC phage shock protein C

Probab=84.89  E-value=1.8  Score=29.15  Aligned_cols=34  Identities=24%  Similarity=0.299  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy648           39 SFDMSCRSRLAVLNEKLTTLERRIEYLEARKSHG   72 (72)
Q Consensus        39 ~F~~sc~~kLa~ln~KL~~LE~~L~~LEAklss~   72 (72)
                      +-..+-+.-|.++++++..+|++|.-+|+-|+|.
T Consensus        77 ~~~~~~~~~l~~~~~~~~~~e~Rl~~mE~yVTS~  110 (121)
T TIGR02978        77 QAGQSPRQALREVKREFRDLERRLRNMERYVTSD  110 (121)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            4456788899999999999999999999999883

All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.

>PRK10697 DNA-binding transcriptional activator PspC; Provisional

Probab=84.71  E-value=1.9  Score=29.12  Aligned_cols=32  Identities=19%  Similarity=0.218  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy648           41 DMSCRSRLAVLNEKLTTLERRIEYLEARKSHG   72 (72)
Q Consensus        41 ~~sc~~kLa~ln~KL~~LE~~L~~LEAklss~   72 (72)
                      ..+-+.-|.++++++..+|++|.-+|.-|+|.
T Consensus        76 ~~s~~~~l~~~~~~~~~~e~Rlr~mE~yVTS~  107 (118)
T PRK10697         76 QPSSSELLDEVDRELAAGEQRLREMERYVTSD  107 (118)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            34678889999999999999999999999883

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	72
3p8c_E	75	Structure And Control Of The Actin Regulatory Wave		2e-26
3pp5_A	73	High-Resolution Structure Of The Trimeric ScarWAVE		7e-13

>pdb|3P8C|E Chain E, Structure And Control Of The Actin Regulatory Wave Complex Length = 75

Iteration: 1
 Score =  114 bits (284), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/70 (75%), Positives = 59/70 (84%)
Query: 3  AVHREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRI 62
          A   + +Q++I QDWANREYIEIIT SIKKI DFLNSFDMSCRSRLA LNEKLT LERRI
Sbjct: 2  AGQEDPVQREIHQDWANREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRI 61
Query: 63 EYLEARKSHG 72
          EY+EAR + G
Sbjct: 62 EYIEARVTKG 71

>pdb|3PP5|A Chain A, High-Resolution Structure Of The Trimeric ScarWAVE COMPLEX PRECURSOR Brk1 Length = 73

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 46/55 (83%)
Query: 13 IQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRIEYLEA 67
          IQ+DW  RE+IE ++ +I+KI +FLN F++S R++L+ LNEKLT L+R+++YLEA
Sbjct: 12 IQKDWEQREFIEDMSINIQKIVEFLNKFELSTRNKLSDLNEKLTILDRQVDYLEA 66
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	72
3p8c_E	75	Probable protein brick1; actin polymerization, pro	2e-29
3pp5_A	73	BRK1, protein brick1; triple coiled-coil, precurso	7e-29

>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens} Length = 75

 Score = 98.6 bits (245), Expect = 2e-29
 Identities = 53/70 (75%), Positives = 59/70 (84%)

Query: 3  AVHREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRI 62
          A   + +Q++I QDWANREYIEIIT SIKKI DFLNSFDMSCRSRLA LNEKLT LERRI
Sbjct: 2  AGQEDPVQREIHQDWANREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRI 61

Query: 63 EYLEARKSHG 72
          EY+EAR + G
Sbjct: 62 EYIEARVTKG 71

>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum} Length = 73

 Score = 97.1 bits (241), Expect = 7e-29
 Identities = 30/67 (44%), Positives = 49/67 (73%)

Query: 2  AAVHREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERR 61
            +   + +  IQ+DW  RE+IE ++ +I+KI +FLN F++S R++L+ LNEKLT L+R+
Sbjct: 1  GPLGSMSTKTNIQKDWEQREFIEDMSINIQKIVEFLNKFELSTRNKLSDLNEKLTILDRQ 60

Query: 62 IEYLEAR 68
          ++YLEA 
Sbjct: 61 VDYLEAT 67

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	72
3p8c_E	75	Probable protein brick1; actin polymerization, pro	100.0
3pp5_A	73	BRK1, protein brick1; triple coiled-coil, precurso	100.0
3ljm_A	31	Coil Ser L9C; de novo design, three stranded coile	94.95
1aq5_A	47	Matrilin-1, CMP, cartilage matrix protein; coiled-	93.7
3pp5_A	73	BRK1, protein brick1; triple coiled-coil, precurso	90.22
1zme_C	70	Proline utilization transcription activator; compl	88.9
3p8c_E	75	Probable protein brick1; actin polymerization, pro	88.45
3swy_A	46	Cyclic nucleotide-gated cation channel alpha-3; co	87.81
2ovc_A	33	Potassium voltage-gated channel subfamily KQT MEM;	87.3
2pnv_A	43	Small conductance calcium-activated potassium chan	86.85
2lw1_A	89	ABC transporter ATP-binding protein UUP; ABC REG s	85.78
2er8_A	72	Regulatory protein Leu3; Zn(2)Cys(6) binuclear clu	80.81

>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}

Probab=100.00  E-value=7.8e-40  Score=205.75  Aligned_cols=71  Identities=76%  Similarity=1.176  Sum_probs=61.6

Q ss_pred             ChHHhHHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy648            1 MAAVHREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRIEYLEARKSHG   72 (72)
Q Consensus         1 ~~~~~~~~v~~~iq~DW~nRe~i~~in~~I~~~~~FLN~F~~sc~~kLa~ln~KL~~LE~~L~~LEAklss~   72 (72)
                      ||+ |+++||++||+||+|||||++|||||++|++|||+|+++||+||++||+||++||++|+||||||+||
T Consensus         1 ~~~-~~~~~q~~iq~DW~nRe~ie~in~~I~~~v~FLN~F~~sce~KLa~ln~KL~~LEr~L~iLEAklss~   71 (75)
T 3p8c_E            1 MAG-QEDPVQREIHQDWANREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYIEARVTKG   71 (75)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             CCc-chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            444 89999999999999999999999999999999999999999999999999999999999999999997

>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}

Probab=100.00  E-value=4.3e-36  Score=187.93  Aligned_cols=67  Identities=45%  Similarity=0.761  Sum_probs=62.4

Q ss_pred             hHHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy648            5 HREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRIEYLEARKSH   71 (72)
Q Consensus         5 ~~~~v~~~iq~DW~nRe~i~~in~~I~~~~~FLN~F~~sc~~kLa~ln~KL~~LE~~L~~LEAklss   71 (72)
                      .+++++++||+||+|||||++||+||+||++|||+|+++||+||+.||+||++||++|+||||||+|
T Consensus         4 ~s~~~~~~iq~DW~nRe~ie~is~~I~~~v~FLN~F~~sce~KLa~ln~kL~~lE~~L~iLEAklsS   70 (73)
T 3pp5_A            4 GSMSTKTNIQKDWEQREFIEDMSINIQKIVEFLNKFELSTRNKLSDLNEKLTILDRQVDYLEATFKT   70 (73)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4678999999999999999999999999999999999999999999999999999999999999987

>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A

Probab=94.95  E-value=0.041  Score=28.83  Aligned_cols=23  Identities=39%  Similarity=0.586  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy648           44 CRSRLAVLNEKLTTLERRIEYLE   66 (72)
Q Consensus        44 c~~kLa~ln~KL~~LE~~L~~LE   66 (72)
                      -+.|-+.|+.|||.||.+|+-||
T Consensus         6 lekkcaalesklqalekkleale   28 (31)
T 3ljm_A            6 LEKKCAALESKLQALEKKLEALE   28 (31)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            35678899999999999999887

>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1

Probab=93.70  E-value=0.22  Score=28.33  Aligned_cols=33  Identities=27%  Similarity=0.462  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy648           37 LNSFDMSCRSRLAVLNEKLTTLERRIEYLEARK   69 (72)
Q Consensus        37 LN~F~~sc~~kLa~ln~KL~~LE~~L~~LEAkl   69 (72)
                      |-.|-.+..++|..|++||..+-++|+.||.++
T Consensus        14 lv~FQ~~v~~~l~~Lt~kL~~vt~rle~lEnrl   46 (47)
T 1aq5_A           14 IVKFQTKVEELINTLQQKLEAVAKRIEALENKI   46 (47)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            457888999999999999999999999999886

>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}

Probab=90.22  E-value=1.5  Score=26.81  Aligned_cols=40  Identities=15%  Similarity=0.316  Sum_probs=32.2

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy648           20 REYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRIE   63 (72)
Q Consensus        20 Re~i~~in~~I~~~~~FLN~F~~sc~~kLa~ln~KL~~LE~~L~   63 (72)
                      +.++.|+|.|=.+.=.=|...    ..||..++.+|.-||++|.
T Consensus        30 ~~~v~FLN~F~~sce~KLa~l----n~kL~~lE~~L~iLEAkls   69 (73)
T 3pp5_A           30 QKIVEFLNKFELSTRNKLSDL----NEKLTILDRQVDYLEATFK   69 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHh
Confidence            467889999988877666544    5799999999999999885

>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A

Probab=88.90  E-value=0.73  Score=25.64  Aligned_cols=27  Identities=19%  Similarity=0.099  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy648           45 RSRLAVLNEKLTTLERRIEYLEARKSH   71 (72)
Q Consensus        45 ~~kLa~ln~KL~~LE~~L~~LEAklss   71 (72)
                      +..+..|+.++..||..|.-|++.|..
T Consensus        43 ~~~~~~L~~ri~~Le~~l~~l~~~l~~   69 (70)
T 1zme_C           43 TKYLQQLQKDLNDKTEENNRLKALLLE   69 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            345888999999999999999998764

>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}

Probab=88.45  E-value=2.4  Score=26.02  Aligned_cols=38  Identities=13%  Similarity=0.258  Sum_probs=23.5

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy648           21 EYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRI   62 (72)
Q Consensus        21 e~i~~in~~I~~~~~FLN~F~~sc~~kLa~ln~KL~~LE~~L   62 (72)
                      .++.|+|.|=.+.=+=|..    -..||..++.+|.-||+++
T Consensus        31 ~~v~FLN~F~~sce~KLa~----ln~KL~~LEr~L~iLEAkl   68 (75)
T 3p8c_E           31 KIADFLNSFDMSCRSRLAT----LNEKLTALERRIEYIEARV   68 (75)
T ss_dssp             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence            4566666666655544443    3467777777777777765

>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}

Probab=87.81  E-value=0.59  Score=26.29  Aligned_cols=21  Identities=29%  Similarity=0.457  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhc
Q psy648           50 VLNEKLTTLERRIEYLEARKS   70 (72)
Q Consensus        50 ~ln~KL~~LE~~L~~LEAkls   70 (72)
                      ++++|+.+||.+|+.|-.+++
T Consensus         2 dlEekv~~Le~~ld~LqTr~A   22 (46)
T 3swy_A            2 ALEEKVEQLGSSLDTLQTRFA   22 (46)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHH
Confidence            578889999999999888775

>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}

Probab=87.30  E-value=1.3  Score=23.39  Aligned_cols=24  Identities=17%  Similarity=0.491  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q psy648           42 MSCRSRLAVLNEKLTTLERRIEYL   65 (72)
Q Consensus        42 ~sc~~kLa~ln~KL~~LE~~L~~L   65 (72)
                      .|.-.|+..++.+++.+|++|+.|
T Consensus         6 ~Sm~~Rl~kVE~qv~~md~KLd~l   29 (33)
T 2ovc_A            6 ISMMGRVVKVEKQVQSIEHKLDLL   29 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHH
Confidence            456678888888888888888876

>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}

Probab=86.85  E-value=1.1  Score=24.73  Aligned_cols=26  Identities=23%  Similarity=0.323  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy648           46 SRLAVLNEKLTTLERRIEYLEARKSH   71 (72)
Q Consensus        46 ~kLa~ln~KL~~LE~~L~~LEAklss   71 (72)
                      ++=..|++||..||.+|+-|.+.+++
T Consensus        16 ~r~e~LE~Ri~~LE~KLd~L~~~l~a   41 (43)
T 2pnv_A           16 ERSEDFEKRIVTLETKLETLIGSIHA   41 (43)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34456677777777777776666543

>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}

Probab=85.78  E-value=1  Score=27.21  Aligned_cols=26  Identities=27%  Similarity=0.405  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccC
Q psy648           47 RLAVLNEKLTTLERRIEYLEARKSHG   72 (72)
Q Consensus        47 kLa~ln~KL~~LE~~L~~LEAklss~   72 (72)
                      .|..|..+|..||..+.-|+++++.|
T Consensus        23 Ele~le~~Ie~LE~~i~~le~~ladp   48 (89)
T 2lw1_A           23 ELEQLPQLLEDLEAKLEALQTQVADA   48 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            47889999999999999999998754

>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A

Probab=80.81  E-value=0.96  Score=25.42  Aligned_cols=23  Identities=22%  Similarity=0.463  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy648           45 RSRLAVLNEKLTTLERRIEYLEA   67 (72)
Q Consensus        45 ~~kLa~ln~KL~~LE~~L~~LEA   67 (72)
                      +.++..|+.+|..||..|.-|++
T Consensus        48 ~~~~~~Le~ri~~Le~~l~~l~~   70 (72)
T 2er8_A           48 RARNEAIEKRFKELTRTLTNLTS   70 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence            35667777777777776665544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00