Psyllid ID: psy6495

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-----
MTKQVQLVRLGVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECECSEVELDEEIKHLNS
ccccEEEEEcccccHHHHHHHHHHHHHHHHHHHccccccccEEEEEcccccEEcccccccccccHHHHHHccccccEEEccccccccccccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHccccccccccccEEEEcccccEEEEcEEccccccccccccccccccccccccccccccccccccccHHHcccccHHHHHHHHHHHHHHHHcccccccccHHHHHcccc
ccccEEEEHcccccHHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccEEEcccccccHHccccHHHcccccccEEEEccccEEEEcccccEEEEEEEEHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccEEEEccHHHEEEEEEEEEccEEEEEEEEEcccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccEEcccccHHHHHcc
MTKQVQLVRLGVVSYSNGIKIQEHYVNKLKTLiskpsnhsgtllllehkpvytIGIRSLKEYDENLELKLNKLGADfyktnrgglitfhgpgqlvaypiinlkhftpSIKWFVQSIEQTVIQLCKQEFSlnaglipkytgvflddeykVCAIGVHSSlyithhglaincdtdltwfnhitpcgikdkqVTSLSKHlskditvdtVVPLFKKHFESVFECECSEVELDEEIKHLNS
mtkqvqlvrlgvvsysngiKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLskditvdtVVPLFKKHFESVFececseveldeeikhlns
MTKQVQLVRLGVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHfesvfececseveldeeIKHLNS
****VQLVRLGVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECECSEVE**********
*TKQVQLVRLGVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECECSEVEL*********
MTKQVQLVRLGVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECECSEVELDEEIKHLNS
**KQVQLVRLGVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECECSEVELDEEIKH*NS
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTKQVQLVRLGVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECECSEVELDEEIKHLNS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query235 2.2.26 [Sep-21-2011]
Q9VN27234 Putative lipoyltransferas yes N/A 0.914 0.918 0.465 7e-55
Q29R99224 Putative lipoyltransferas yes N/A 0.885 0.928 0.493 9e-52
Q0VFH3239 Putative lipoyltransferas yes N/A 0.897 0.882 0.453 2e-50
A6NK58231 Putative lipoyltransferas yes N/A 0.902 0.917 0.440 4e-44
Q8R9E0228 Octanoyltransferase OS=Th yes N/A 0.910 0.938 0.420 6e-42
Q9D009231 Putative lipoyltransferas yes N/A 0.897 0.913 0.438 2e-41
B0K3J8228 Octanoyltransferase OS=Th yes N/A 0.919 0.947 0.412 1e-40
B0K8D0228 Octanoyltransferase OS=Th yes N/A 0.919 0.947 0.407 3e-40
Q2RZI1256 Octanoyltransferase OS=Sa yes N/A 0.940 0.863 0.379 1e-38
Q948J9278 Plastidial lipoyltransfer yes N/A 0.753 0.636 0.414 2e-36
>sp|Q9VN27|LIPT2_DROME Putative lipoyltransferase 2, mitochondrial OS=Drosophila melanogaster GN=CG9804 PE=2 SV=1 Back     alignment and function desciption
 Score =  213 bits (543), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 102/219 (46%), Positives = 146/219 (66%), Gaps = 4/219 (1%)

Query: 5   VQLVRLGVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDE 64
           V +VR G  SYS G+++Q+  + +   +++ P+     L+L EH PVYT+G+R+ K+Y  
Sbjct: 8   VTVVRAGRHSYSAGLQLQQR-LARSNQILNPPAEFRNYLVLQEHDPVYTVGLRT-KDYTA 65

Query: 65  NLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLC 124
             E +L +LGADF++T+RGGLITFHGPGQLVAYPI++L  F PSI+W+V ++E+ V++ C
Sbjct: 66  QDEDRLRRLGADFHRTDRGGLITFHGPGQLVAYPILHLGQFVPSIRWYVATLERMVVEAC 125

Query: 125 KQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHITPCGI 184
            Q   +++    K TG+++ D  K+CAIG+H S Y+T HG+ +NC TDL WF HI PCGI
Sbjct: 126 HQ-MGISSAKATKDTGIWVGDN-KICAIGIHGSRYVTTHGIGLNCCTDLQWFEHIVPCGI 183

Query: 185 KDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECECSE 223
           + K VTSLSK L +   V+         F  VFEC   E
Sbjct: 184 EGKGVTSLSKELDRHFPVEEASGALLNSFAKVFECRLQE 222
Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 1EC: 8EC: 1
>sp|Q29R99|LIPT2_DANRE Putative lipoyltransferase 2, mitochondrial OS=Danio rerio GN=lipt2 PE=2 SV=1 Back     alignment and function description
>sp|Q0VFH3|LIPT2_XENTR Putative lipoyltransferase 2, mitochondrial OS=Xenopus tropicalis GN=lipt2 PE=2 SV=1 Back     alignment and function description
>sp|A6NK58|LIPT2_HUMAN Putative lipoyltransferase 2, mitochondrial OS=Homo sapiens GN=LIPT2 PE=3 SV=1 Back     alignment and function description
>sp|Q8R9E0|LIPB_THETN Octanoyltransferase OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=lipB PE=3 SV=1 Back     alignment and function description
>sp|Q9D009|LIPT2_MOUSE Putative lipoyltransferase 2, mitochondrial OS=Mus musculus GN=Lipt2 PE=2 SV=2 Back     alignment and function description
>sp|B0K3J8|LIPB_THEPX Octanoyltransferase OS=Thermoanaerobacter sp. (strain X514) GN=lipB PE=3 SV=1 Back     alignment and function description
>sp|B0K8D0|LIPB_THEP3 Octanoyltransferase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=lipB PE=3 SV=1 Back     alignment and function description
>sp|Q2RZI1|LIPB_SALRD Octanoyltransferase OS=Salinibacter ruber (strain DSM 13855 / M31) GN=lipB PE=3 SV=1 Back     alignment and function description
>sp|Q948J9|LIP2P_ARATH Plastidial lipoyltransferase 2 OS=Arabidopsis thaliana GN=LIP2p PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query235
383855378238 PREDICTED: putative lipoyltransferase 2, 0.970 0.957 0.5 7e-60
307202740232 Putative octanoyltransferase, mitochondr 0.931 0.943 0.530 9e-60
242247165233 lipoate-protein ligase b-like [Acyrthosi 0.940 0.948 0.506 2e-58
307186806235 Putative octanoyltransferase, mitochondr 0.906 0.906 0.536 2e-58
195113409228 GI22071 [Drosophila mojavensis] gi|19391 0.931 0.960 0.513 2e-58
334852207250 putative lipoyltransferase 2, mitochondr 0.931 0.876 0.480 4e-58
312378234244 hypothetical protein AND_10263 [Anophele 0.944 0.909 0.465 7e-58
91076596240 PREDICTED: similar to lipoate-protein li 0.902 0.883 0.529 1e-57
170040466234 lipoate-protein ligase [Culex quinquefas 0.978 0.982 0.470 2e-57
347963986237 AGAP000531-PA [Anopheles gambiae str. PE 0.974 0.966 0.479 5e-57
>gi|383855378|ref|XP_003703190.1| PREDICTED: putative lipoyltransferase 2, mitochondrial-like [Megachile rotundata] Back     alignment and taxonomy information
 Score =  236 bits (601), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 117/234 (50%), Positives = 171/234 (73%), Gaps = 6/234 (2%)

Query: 2   TKQVQLVRLGVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKE 61
           +K V+++  G +SY+ G+K+Q+   ++    +++ +    TL+LLEH PV+T+GIR  K 
Sbjct: 3   SKLVKVLWAGRLSYNTGLKLQKVLSSQHHQNLTQDT--CNTLILLEHDPVFTVGIRD-KG 59

Query: 62  YDENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVI 121
           Y    E +L KLGA+FY+TNRGGLITFHGPGQLVAYPI+NLKHF  S+KW+V  IE+ +I
Sbjct: 60  YTIEEEERLKKLGAEFYRTNRGGLITFHGPGQLVAYPILNLKHFKCSVKWYVSQIEEMII 119

Query: 122 QLCKQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHITP 181
           +LC  E+ + AG  P  TGV+++D  K+CAIG+H S YIT HGLA+NC+T+L+WF+HI P
Sbjct: 120 RLCA-EYGIKAGTSPD-TGVWVNDR-KICAIGIHGSRYITTHGLALNCNTNLSWFDHIVP 176

Query: 182 CGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECECSEVELDEEIKHLNS 235
           CGI+ K VTS+SK L+K++TV  V+PLF+  F++ F+C   +   ++ +K L +
Sbjct: 177 CGIEGKGVTSISKELNKNVTVQDVIPLFQNVFQTQFDCRLIQYSTEDSLKLLKT 230

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307202740|gb|EFN82031.1| Putative octanoyltransferase, mitochondrial [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|242247165|ref|NP_001156299.1| lipoate-protein ligase b-like [Acyrthosiphon pisum] gi|239790512|dbj|BAH71813.1| ACYPI009338 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|307186806|gb|EFN72229.1| Putative octanoyltransferase, mitochondrial [Camponotus floridanus] Back     alignment and taxonomy information
>gi|195113409|ref|XP_002001260.1| GI22071 [Drosophila mojavensis] gi|193917854|gb|EDW16721.1| GI22071 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|334852207|ref|NP_001229368.1| putative lipoyltransferase 2, mitochondrial [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|312378234|gb|EFR24866.1| hypothetical protein AND_10263 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|91076596|ref|XP_968499.1| PREDICTED: similar to lipoate-protein ligase [Tribolium castaneum] Back     alignment and taxonomy information
>gi|170040466|ref|XP_001848019.1| lipoate-protein ligase [Culex quinquefasciatus] gi|167864103|gb|EDS27486.1| lipoate-protein ligase [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|347963986|ref|XP_310556.4| AGAP000531-PA [Anopheles gambiae str. PEST] gi|333466942|gb|EAA06255.5| AGAP000531-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query235
ZFIN|ZDB-GENE-060312-18224 zgc:136925 "zgc:136925" [Danio 0.851 0.892 0.504 1.3e-50
FB|FBgn0037251234 CG9804 [Drosophila melanogaste 0.829 0.833 0.482 2e-49
UNIPROTKB|A6NK58231 LIPT2 "Putative lipoyltransfer 0.859 0.874 0.452 4.6e-41
UNIPROTKB|F1SUQ1225 LOC100739011 "Putative lipoylt 0.846 0.884 0.439 1.4e-39
UNIPROTKB|I3LDL3225 LOC100739011 "Putative lipoylt 0.846 0.884 0.439 1.4e-39
MGI|MGI:1914414231 Lipt2 "lipoyl(octanoyl) transf 0.855 0.870 0.445 3.4e-38
RGD|1305211231 Lipt2 "lipoyl(octanoyl) transf 0.855 0.870 0.440 3.4e-38
UNIPROTKB|E2RA82231 LIPT2 "Putative lipoyltransfer 0.859 0.874 0.428 4.9e-37
UNIPROTKB|E1BI46226 LIPT2 "Putative lipoyltransfer 0.846 0.880 0.415 8e-37
TAIR|locus:2126609278 AT4G31050 [Arabidopsis thalian 0.778 0.658 0.414 9.2e-36
ZFIN|ZDB-GENE-060312-18 zgc:136925 "zgc:136925" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 105/208 (50%), Positives = 143/208 (68%)

Query:     1 MTKQ-VQLVRLGVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSL 59
             +TK  V+ V LG +SY + +KIQ+ ++ +    +   SN   TLLL EH+PVYTIG+R  
Sbjct:     3 VTKAAVKAVHLGRISYHSALKIQQQHIQQH---LDSSSNIPNTLLLCEHEPVYTIGLRQA 59

Query:    60 KEYDENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQT 119
               Y    E +L  LGADF +TNRGGLITFHGPGQLV YPI+NL  F  S++W+V  +E+T
Sbjct:    60 P-YPPAEEQRLKALGADFCRTNRGGLITFHGPGQLVCYPILNLGCFKKSVRWYVCELERT 118

Query:   120 VIQLCKQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHI 179
             VI++C + F + A   P  TGV++ D  K+CAIG+H   YIT HGLA+NC+TD++WF++I
Sbjct:   119 VIKMCGK-FGIKASTSPD-TGVWVGDN-KICAIGIHCGRYITSHGLALNCNTDMSWFDNI 175

Query:   180 TPCGIKDKQVTSLSKHLSKDITVDTVVP 207
              PCGI  K VTSLS+ L +D+  D  +P
Sbjct:   176 VPCGIVGKGVTSLSQELERDVPPDEAIP 203
GO:0016415 "octanoyltransferase activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0009107 "lipoate biosynthetic process" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
GO:0006464 "cellular protein modification process" evidence=IEA
GO:0005739 "mitochondrion" evidence=IEA
GO:0033819 "lipoyl(octanoyl) transferase activity" evidence=IEA
GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA
GO:0016874 "ligase activity" evidence=IEA
GO:0016740 "transferase activity" evidence=IEA
FB|FBgn0037251 CG9804 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|A6NK58 LIPT2 "Putative lipoyltransferase 2, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SUQ1 LOC100739011 "Putative lipoyltransferase 2, mitochondrial" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LDL3 LOC100739011 "Putative lipoyltransferase 2, mitochondrial" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1914414 Lipt2 "lipoyl(octanoyl) transferase 2 (putative)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1305211 Lipt2 "lipoyl(octanoyl) transferase 2 (putative)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2RA82 LIPT2 "Putative lipoyltransferase 2, mitochondrial" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BI46 LIPT2 "Putative lipoyltransferase 2, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
TAIR|locus:2126609 AT4G31050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q1B6R2LIPB_MYCSS2, ., 3, ., 1, ., 1, 8, 10.39710.80420.7941yesN/A
Q1IIJ5LIPB_KORVE2, ., 3, ., 1, ., 1, 8, 10.37150.88510.8286yesN/A
B2HHL3LIPB_MYCMM2, ., 3, ., 1, ., 1, 8, 10.36320.82970.8091yesN/A
A4XA20LIPB_SALTO2, ., 3, ., 1, ., 1, 8, 10.35580.86380.9530yesN/A
A1TB25LIPB_MYCVP2, ., 3, ., 1, ., 1, 8, 10.36230.79570.7857yesN/A
A6GYW1LIPB_FLAPJ2, ., 3, ., 1, ., 1, 8, 10.36750.91060.9224yesN/A
A5FIL6LIPB_FLAJ12, ., 3, ., 1, ., 1, 8, 10.39140.91480.9267yesN/A
A5U4P5LIPB_MYCTA2, ., 3, ., 1, ., 1, 8, 10.40290.78290.8yesN/A
A0QEY7LIPB_MYCA12, ., 3, ., 1, ., 1, 8, 10.38160.79570.8025yesN/A
C1AQD2LIPB_MYCBT2, ., 3, ., 1, ., 1, 8, 10.40290.78290.8yesN/A
Q9D009LIPT2_MOUSE2, ., 3, ., 1, ., 1, 8, 10.43890.89780.9134yesN/A
Q02AK4LIPB_SOLUE2, ., 3, ., 1, ., 1, 8, 10.39440.85530.9136yesN/A
Q1AT14LIPB_RUBXD2, ., 3, ., 1, ., 1, 8, 10.41700.78290.8325yesN/A
A6NK58LIPT2_HUMAN2, ., 3, ., 1, ., 1, 8, 10.44090.90210.9177yesN/A
B2IVM2LIPB_NOSP72, ., 3, ., 1, ., 1, 8, 10.35680.86380.8826yesN/A
Q47R87LIPB_THEFY2, ., 3, ., 1, ., 1, 8, 10.35840.82120.8177yesN/A
B0K3J8LIPB_THEPX2, ., 3, ., 1, ., 1, 8, 10.41220.91910.9473yesN/A
A1UIB3LIPB_MYCSK2, ., 3, ., 1, ., 1, 8, 10.39710.80420.7941yesN/A
A0LTE0LIPB_ACIC12, ., 3, ., 1, ., 1, 8, 10.39600.78290.8325yesN/A
Q10ZL5LIPB_TRIEI2, ., 3, ., 1, ., 1, 8, 10.36690.88080.9366yesN/A
Q0VFH3LIPT2_XENTR2, ., 3, ., 1, ., 1, 8, 10.45370.89780.8828yesN/A
Q7VEN4LIPB_MYCBO2, ., 3, ., 1, ., 1, 8, 10.40290.78290.8yesN/A
Q2JTV2LIPB_SYNJA2, ., 3, ., 1, ., 1, 8, 10.33330.95310.8615yesN/A
Q2RZI1LIPB_SALRD2, ., 3, ., 1, ., 1, 8, 10.37970.94040.8632yesN/A
A0M5H7LIPB_GRAFK2, ., 3, ., 1, ., 1, 8, 10.39830.91060.9145yesN/A
Q64UP8LIPB_BACFR2, ., 3, ., 1, ., 1, 8, 10.41700.81700.8687yesN/A
A1KKQ9LIPB_MYCBP2, ., 3, ., 1, ., 1, 8, 10.40290.78290.8yesN/A
B0K8D0LIPB_THEP32, ., 3, ., 1, ., 1, 8, 10.40780.91910.9473yesN/A
Q11XW2LIPB_CYTH32, ., 3, ., 1, ., 1, 8, 10.36240.91480.8811yesN/A
A8LYF4LIPB_SALAI2, ., 3, ., 1, ., 1, 8, 10.35740.85950.9483yesN/A
Q29R99LIPT2_DANRE2, ., 3, ., 1, ., 1, 8, 10.49300.88510.9285yesN/A
Q8R9E0LIPB_THETN2, ., 3, ., 1, ., 1, 8, 10.42030.91060.9385yesN/A
A5MZJ0LIPB_CLOK52, ., 3, ., 1, ., 1, 8, 10.39230.85530.8626yesN/A
C1F3S1LIPB_ACIC52, ., 3, ., 1, ., 1, 8, 10.36170.84680.8089yesN/A
Q9VN27LIPT2_DROME2, ., 3, ., 1, ., 1, 8, 10.46570.91480.9188yesN/A
Q10404LIPB_MYCTU2, ., 3, ., 1, ., 1, 8, 10.40290.78290.8yesN/A
B9MQ23LIPB_CALBD2, ., 3, ., 1, ., 1, 8, 10.39040.85530.8815yesN/A
A4J246LIPB_DESRM2, ., 3, ., 1, ., 1, 8, 10.37850.88510.9122yesN/A
Q8A8S8LIPB_BACTN2, ., 3, ., 1, ., 1, 8, 10.39700.83820.8678yesN/A
Q5LDM3LIPB_BACFN2, ., 3, ., 1, ., 1, 8, 10.41700.81700.8687yesN/A
A3Q1S7LIPB_MYCSJ2, ., 3, ., 1, ., 1, 8, 10.39710.80420.7941yesN/A
A4XHV1LIPB_CALS82, ., 3, ., 1, ., 1, 8, 10.39820.91910.9191yesN/A
Q948J9LIP2P_ARATH2, ., 3, ., 1, ., -0.41430.75310.6366yesN/A
A6L9E1LIPB_PARD82, ., 3, ., 1, ., 1, 8, 10.3750.85100.9049yesN/A
A0R074LIPB_MYCS22, ., 3, ., 1, ., 1, 8, 10.40090.79570.8201yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.3.10.921
3rd Layer2.3.1.1810.914

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query235
COG0321221 COG0321, LipB, Lipoate-protein ligase B [Coenzyme 2e-64
PRK14345234 PRK14345, PRK14345, lipoate-protein ligase B; Prov 3e-51
TIGR00214184 TIGR00214, lipB, lipoate-protein ligase B 3e-47
PRK14348221 PRK14348, PRK14348, lipoate-protein ligase B; Prov 2e-45
PRK14344223 PRK14344, PRK14344, lipoate-protein ligase B; Prov 2e-43
PRK14341213 PRK14341, PRK14341, lipoate-protein ligase B; Prov 1e-37
PRK14342213 PRK14342, PRK14342, lipoate-protein ligase B; Prov 1e-30
PRK14347209 PRK14347, PRK14347, lipoate-protein ligase B; Prov 2e-27
PRK14346230 PRK14346, PRK14346, lipoate-protein ligase B; Prov 2e-25
PRK14343235 PRK14343, PRK14343, lipoate-protein ligase B; Prov 2e-23
PRK14349220 PRK14349, PRK14349, lipoate-protein ligase B; Prov 1e-20
pfam03099124 pfam03099, BPL_LplA_LipB, Biotin/lipoate A/B prote 5e-12
>gnl|CDD|223398 COG0321, LipB, Lipoate-protein ligase B [Coenzyme metabolism] Back     alignment and domain information 
 Score =  199 bits (507), Expect = 2e-64
 Identities = 76/218 (34%), Positives = 113/218 (51%), Gaps = 14/218 (6%)

Query: 1   MTKQVQLVR-LGVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSL 59
              ++ LVR LG+V Y    ++ E + +      +        + L+EH PVYT G    
Sbjct: 6   SKPKIILVRELGLVDYQEAWQLMETFTDARADGGTPD-----EIWLVEHPPVYTAGQAG- 59

Query: 60  KEYDENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQT 119
                  E  L        +T+RGG +T+HGPGQLVAYPI++LK     ++ +V+++EQ 
Sbjct: 60  -----KAEHLLMPDDIPVVQTDRGGQVTYHGPGQLVAYPILDLKRPKLDVREYVRALEQA 114

Query: 120 VIQLCKQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHI 179
           VI     E+ + A   P   GV++++E K+ AIG+     +T HGLA+N + DL+ FN I
Sbjct: 115 VINTLA-EYGIEAERRPDRPGVWVEEERKIAAIGIRIRRGVTFHGLALNVNMDLSPFNRI 173

Query: 180 TPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVF 217
            PCG    +VTSLS  L   +TVD V       F  + 
Sbjct: 174 VPCGYAGMEVTSLSD-LGPPVTVDEVAKALVAAFAKLL 210

Length = 221
>gnl|CDD|184638 PRK14345, PRK14345, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|232877 TIGR00214, lipB, lipoate-protein ligase B Back     alignment and domain information
>gnl|CDD|172824 PRK14348, PRK14348, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|237683 PRK14344, PRK14344, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|237680 PRK14341, PRK14341, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|237681 PRK14342, PRK14342, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|172823 PRK14347, PRK14347, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|237684 PRK14346, PRK14346, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|237682 PRK14343, PRK14343, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|172825 PRK14349, PRK14349, lipoate-protein ligase B; Provisional Back     alignment and domain information
>gnl|CDD|217367 pfam03099, BPL_LplA_LipB, Biotin/lipoate A/B protein ligase family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 235
PRK14342213 lipoate-protein ligase B; Provisional 100.0
PRK14345234 lipoate-protein ligase B; Provisional 100.0
PRK14348221 lipoate-protein ligase B; Provisional 100.0
PRK14341213 lipoate-protein ligase B; Provisional 100.0
PRK14343235 lipoate-protein ligase B; Provisional 100.0
PRK14344223 lipoate-protein ligase B; Provisional 100.0
PRK14347209 lipoate-protein ligase B; Provisional 100.0
COG0321221 LipB Lipoate-protein ligase B [Coenzyme metabolism 100.0
PRK14346230 lipoate-protein ligase B; Provisional 100.0
PRK14349220 lipoate-protein ligase B; Provisional 100.0
TIGR00214184 lipB lipoate-protein ligase B. Involved in lipoate 100.0
KOG0325|consensus226 100.0
PRK03822 338 lplA lipoate-protein ligase A; Provisional 99.98
TIGR00545324 lipoyltrans lipoyltransferase and lipoate-protein 99.97
PRK14061 562 unknown domain/lipoate-protein ligase A fusion pro 99.97
COG0095248 LplA Lipoate-protein ligase A [Coenzyme metabolism 99.96
KOG3159|consensus336 99.87
PF03099125 BPL_LplA_LipB: Biotin/lipoate A/B protein ligase f 99.72
PRK08330236 biotin--protein ligase; Provisional 99.63
PRK05935190 biotin--protein ligase; Provisional 99.03
TIGR00121237 birA_ligase birA, biotin-[acetyl-CoA-carboxylase] 98.88
COG0340238 BirA Biotin-(acetyl-CoA carboxylase) ligase [Coenz 98.83
PTZ00275285 biotin-acetyl-CoA-carboxylase ligase; Provisional 98.72
PTZ00276245 biotin/lipoate protein ligase; Provisional 98.71
PRK11886319 bifunctional biotin--[acetyl-CoA-carboxylase] synt 98.6
PRK08477211 biotin--protein ligase; Provisional 98.51
PRK06955300 biotin--protein ligase; Provisional 98.32
PRK13325 592 bifunctional biotin--[acetyl-CoA-carboxylase] liga 98.14
PF04017183 DUF366: Domain of unknown function (DUF366); Inter 95.69
COG2029189 Uncharacterized conserved protein [Function unknow 94.95
KOG1536|consensus649 94.62
KOG0325|consensus226 87.58
>PRK14342 lipoate-protein ligase B; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.1e-66  Score=443.52  Aligned_cols=208  Identities=31%  Similarity=0.529  Sum_probs=192.0

Q ss_pred             CCceeEEEEcCCCCHHHHHHHHHHHHHHHHhccCCCCCCccEEEEEEeCCeEEEccCcccccchhhHhhhccCCCcEEEe
Q psy6495           1 MTKQVQLVRLGVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKT   80 (235)
Q Consensus         1 m~~~~~~~~lg~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~TiGr~~~~~~~~~~~~~l~~~gi~v~r~   80 (235)
                      |++++.++++|+++|.+||++|+++++++..    ..+|  +|||||||||||+|+++..++      .+...+++|+++
T Consensus         2 ~~~~~~~~~lg~~~Y~~a~~~Q~~l~~~~~~----~~~d--~llllEH~pVyT~Gr~~~~~~------ll~~~~~~v~~~   69 (213)
T PRK14342          2 MQNKLIVRQLGLQPYEPVWQAMQEFTDTRDE----ETPD--EIWLVEHPPVFTQGQAGKPEH------ILNPGDIPVVQS   69 (213)
T ss_pred             CCCeEEEEeCCCcCHHHHHHHHHHHHHHHhC----CCCC--EEEEEcCCCCccCCCCCChhh------ccCCCCCcEEEe
Confidence            4577999999999999999999999988765    3457  999999999999999983222      234569999999


Q ss_pred             ccCCceEEEcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhhcCCeeEeeCCCceEEeCCCCceeeeceeeeCcE
Q psy6495          81 NRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYI  160 (235)
Q Consensus        81 ~rGGg~tyHgpGQLv~y~il~l~~~~~~~~~~~~~le~~vi~~L~~~~Gi~a~~~~~~~gv~v~~~rKIa~iG~~~~~~v  160 (235)
                      +|||++|||||||||+|||+||++.+.++++|++.||+++|++|++ |||++.+.++.+|||+++ +||||||+++++|+
T Consensus        70 ~RGG~iTyHGPGQLV~YpIl~L~~~~~~~~~yv~~lE~~vi~~l~~-~gi~~~~~~~~~GVWv~~-~KIaaIGv~v~r~v  147 (213)
T PRK14342         70 DRGGQVTYHGPGQLVMYVLLDLKRLKLGVRQLVTAIEQTVINTLAE-YGIEAHAKPDAPGVYVDG-KKIASLGLRIRRGC  147 (213)
T ss_pred             cCCCceEEECCCeEEEEEEEEccccCCCHHHHHHHHHHHHHHHHHH-cCCceeecCCCCcCcccC-CEEEEEEEeEecce
Confidence            9999999999999999999999998999999999999999999999 999999988899999999 99999999999999


Q ss_pred             EEEeeeeecCCCccccccccCCCCCCCCeeeeccccCCCCCHHHHHHHHHHHHHHhhcccccc
Q psy6495         161 THHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECECSE  223 (235)
Q Consensus       161 t~hG~alNv~~dl~~f~~i~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~~~~~  223 (235)
                      |+|||||||++||++|+.|+|||++|+.||||++ ++.+++++++++.++++|++.|+....+
T Consensus       148 T~HG~AlNv~~dL~~F~~IvPCGl~~~~vTSl~~-~~~~~~~~~v~~~~~~~f~~~f~~~~~~  209 (213)
T PRK14342        148 SFHGLALNVNMDLSPFLRINPCGYAGLEMTQLSD-LGGPATVDEVAPRLLAELLALLGYNDQE  209 (213)
T ss_pred             eecceeEecCCCchhhCcEecCCCCCCcEeeHHH-hCCCCCHHHHHHHHHHHHHHHhCCcchh
Confidence            9999999999999999999999999999999987 5889999999999999999999976644

>PRK14345 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14348 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14341 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14343 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14344 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14347 lipoate-protein ligase B; Provisional Back     alignment and domain information
>COG0321 LipB Lipoate-protein ligase B [Coenzyme metabolism] Back     alignment and domain information
>PRK14346 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14349 lipoate-protein ligase B; Provisional Back     alignment and domain information
>TIGR00214 lipB lipoate-protein ligase B Back     alignment and domain information
>KOG0325|consensus Back     alignment and domain information
>PRK03822 lplA lipoate-protein ligase A; Provisional Back     alignment and domain information
>TIGR00545 lipoyltrans lipoyltransferase and lipoate-protein ligase Back     alignment and domain information
>PRK14061 unknown domain/lipoate-protein ligase A fusion protein; Provisional Back     alignment and domain information
>COG0095 LplA Lipoate-protein ligase A [Coenzyme metabolism] Back     alignment and domain information
>KOG3159|consensus Back     alignment and domain information
>PF03099 BPL_LplA_LipB: Biotin/lipoate A/B protein ligase family This entry is just a subset of the Pfam family; InterPro: IPR004143 This domain is found in biotin protein ligase, lipoate-protein ligase A and B Back     alignment and domain information
>PRK08330 biotin--protein ligase; Provisional Back     alignment and domain information
>PRK05935 biotin--protein ligase; Provisional Back     alignment and domain information
>TIGR00121 birA_ligase birA, biotin-[acetyl-CoA-carboxylase] ligase region Back     alignment and domain information
>COG0340 BirA Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism] Back     alignment and domain information
>PTZ00275 biotin-acetyl-CoA-carboxylase ligase; Provisional Back     alignment and domain information
>PTZ00276 biotin/lipoate protein ligase; Provisional Back     alignment and domain information
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional Back     alignment and domain information
>PRK08477 biotin--protein ligase; Provisional Back     alignment and domain information
>PRK06955 biotin--protein ligase; Provisional Back     alignment and domain information
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed Back     alignment and domain information
>PF04017 DUF366: Domain of unknown function (DUF366); InterPro: IPR007162 This is an archaeal family of unknown function Back     alignment and domain information
>COG2029 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1536|consensus Back     alignment and domain information
>KOG0325|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query235
1w66_A232 Structure Of A Lipoate-protein Ligase B From Mycoba 2e-33
2qht_A210 Structural Basis Of Octanoic Acid Recognition By Li 8e-27
2qhs_A237 Structural Basis Of Octanoic Acid Recognition By Li 8e-27
>pdb|1W66|A Chain A, Structure Of A Lipoate-protein Ligase B From Mycobacterium Tuberculosis Length = 232 Back     alignment and structure 
Iteration: 1

 Score =  138 bits (348), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/201 (40%), Positives = 112/201 (55%), Gaps = 17/201 (8%)
Query: 5   VQLVRLGVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDE 64
           + + +LG V Y    ++Q    +      ++ +  + TLLLLEH  VYT G R+     E
Sbjct: 14  IDVRQLGTVDYRTAWQLQRELAD------ARVAGGADTLLLLEHPAVYTAGRRT-----E 62
Query: 65  NLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLC 124
             E  ++  G     T+RGG IT+HGPGQLV YPII L      +  +V+ +E+++IQ+C
Sbjct: 63  THERPID--GTPVVDTDRGGKITWHGPGQLVGYPIIGLAEPLDVVN-YVRRLEESLIQVC 119
Query: 125 KQEFSLNAGLIPKYTGVFLDDE--YKVCAIGVHSSLYITHHGLAINCDTDLTWFNHITPC 182
             +  L+AG +   +GV+L      KV AIGV  S   T HG A+NCD DL  F  I PC
Sbjct: 120 A-DLGLHAGRVDGRSGVWLPGRPARKVAAIGVRVSRATTLHGFALNCDCDLAAFTAIVPC 178
Query: 183 GIKDKQVTSLSKHLSKDITVD 203
           GI D  VTSLS  L + +TVD
Sbjct: 179 GISDAAVTSLSAELGRTVTVD 199
>pdb|2QHT|A Chain A, Structural Basis Of Octanoic Acid Recognition By Lipoate-Protein Ligase B Length = 210 Back     alignment and structure
>pdb|2QHS|A Chain A, Structural Basis Of Octanoic Acid Recognition By Lipoate-protein Ligase B Length = 237 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query235
2qhs_A237 Lipoyltransferase; globular protein; HET: OCA; 1.5 2e-85
1w66_A232 Lipoyltransferase; lipoate-protein ligase B, lipoi 8e-85
2p0l_A288 Lipoate-protein ligase A; PFAM, lopoate-protein li 6e-05
2c8m_A262 Lipoate-protein ligase A; lipoylation; HET: LPA; 1 6e-04
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus} PDB: 2qht_A 2qhu_A 2qhv_A Length = 237 Back     alignment and structure
 Score =  252 bits (646), Expect = 2e-85
 Identities = 73/226 (32%), Positives = 114/226 (50%), Gaps = 10/226 (4%)

Query: 3   KQVQLVRLGVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEY 62
            +  +  LG+V Y      Q+    ++        N   TLLLLEH  V T+G ++  E 
Sbjct: 21  MEFLVEDLGLVPYGEAWAYQKRVHREVVA-----GNRPPTLLLLEHPRVITLGRKATGEN 75

Query: 63  DENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQ 122
               E    + G + Y   RGG +T+HGPGQLV YPI  +      ++ F++ IE+ +++
Sbjct: 76  LLFPESWYRENGFELYWVERGGDVTYHGPGQLVGYPIFPVGR---EVRRFLRQIEEAIVR 132

Query: 123 LCKQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHITPC 182
           +    + ++A   P Y GV++ ++ K+CAIGV     ++ HG A+N +TDL  F  I PC
Sbjct: 133 VAA-GYGISAYPTPGYAGVWVGED-KLCAIGVAVKEGVSFHGFALNVNTDLNDFTVIVPC 190

Query: 183 GIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECECSEVELDE 228
           G+K K VTSL K L + + ++         F  VF     E  + E
Sbjct: 191 GLKGKGVTSLEKLLGRKVPMEEAKARVVAAFAEVFGLRPVEGSVHE 236
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3 Length = 232 Back     alignment and structure
>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, 10425H, structural genomics, structure initiative, PSI-2; 2.04A {Streptococcus agalactiae} SCOP: d.104.1.3 Length = 288 Back     alignment and structure
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A Length = 262 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query235
1w66_A232 Lipoyltransferase; lipoate-protein ligase B, lipoi 100.0
2qhs_A237 Lipoyltransferase; globular protein; HET: OCA; 1.5 100.0
2p0l_A288 Lipoate-protein ligase A; PFAM, lopoate-protein li 100.0
2p5i_A288 BH3822 protein; PFAM03099, structural genomics, PS 100.0
2c8m_A262 Lipoate-protein ligase A; lipoylation; HET: LPA; 1 100.0
1vqz_A 341 Lipoate-protein ligase, putative; class II AARS an 100.0
3a7r_A 337 Lipoate-protein ligase A; adenylate-forming enzyme 100.0
2e5a_A 347 Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 100.0
2eay_A233 Biotin [acetyl-COA-carboxylase] ligase; biotin bio 99.05
2dxu_A235 Biotin--[acetyl-COA-carboxylase] ligase; biotin bi 99.03
3rkx_A323 Biotin-[acetyl-COA-carboxylase] ligase; biotin pro 98.98
2ej9_A237 Putative biotin ligase; biotin biosynthesis, monom 98.83
3rux_A270 BIRA bifunctional protein; biotin-protein ligase, 98.82
3bfm_A235 Biotin protein ligase-like protein of unknown FUN; 98.8
1bia_A321 BIRA bifunctional protein; transcription regulatio 98.77
2ddz_A190 190AA long hypothetical protein; hexamer, structur 96.32
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3 Back     alignment and structure
Probab=100.00  E-value=1.3e-62  Score=424.71  Aligned_cols=206  Identities=39%  Similarity=0.612  Sum_probs=190.7

Q ss_pred             ceeEEEEcCCCCHHHHHHHHHHHHHHHHhccCCCCCCccEEEEEEeCCeEEEccCcccccchhhHhhhccCCCcEEEecc
Q psy6495           3 KQVQLVRLGVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNR   82 (235)
Q Consensus         3 ~~~~~~~lg~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~TiGr~~~~~~~~~~~~~l~~~gi~v~r~~r   82 (235)
                      ..++++++|++||.++|++|+.+++.+.++    .+|  +||||||||+||+|++| +..      .+...||+|+||+|
T Consensus        12 ~~~~~~~lg~~~Y~~a~~~q~~l~~~~~~~----~~d--~l~l~eh~pv~TiG~~q-~~~------~l~~~gi~Vvr~~r   78 (232)
T 1w66_A           12 SAIDVRQLGTVDYRTAWQLQRELADARVAG----GAD--TLLLLEHPAVYTAGRRT-ETH------ERPIDGTPVVDTDR   78 (232)
T ss_dssp             SCCEEEEEEECCHHHHHHHHHHHHHHHHTT----CCC--EEEEEECCSEEEECTTC-CGG------GSCTTCCCCEECSS
T ss_pred             ceEEEEeCCCcCHHHHHHHHHHHHHHhhCC----CCC--EEEEEecCCEEEeCCCC-Chh------hhcccCCeEEEecC
Confidence            468999999999999999999999998753    457  99999999999999999 322      24467999999999


Q ss_pred             CCceEEEcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhhcCCeeEeeCCCceEEeC---CCCceeeeceeeeCc
Q psy6495          83 GGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVFLD---DEYKVCAIGVHSSLY  159 (235)
Q Consensus        83 GGg~tyHgpGQLv~y~il~l~~~~~~~~~~~~~le~~vi~~L~~~~Gi~a~~~~~~~gv~v~---~~rKIa~iG~~~~~~  159 (235)
                      ||++|||||||+|+|||+++++ +.++++|++.||+++|++|++ |||+|++.+++|||||+   + |||||+|+++++|
T Consensus        79 GG~~tYHgPGQlv~Y~Il~l~~-~~~v~~~v~~le~~vI~~L~~-~Gi~a~~~~g~~gV~v~~~~~-rKIaaig~r~~~~  155 (232)
T 1w66_A           79 GGKITWHGPGQLVGYPIIGLAE-PLDVVNYVRRLEESLIQVCAD-LGLHAGRVDGRSGVWLPGRPA-RKVAAIGVRVSRA  155 (232)
T ss_dssp             SSSEEEECTTEEEEEEECBBCS-SCCHHHHHHHHHHHHHHHHHH-TTCCCEEETTEEEEEECSSSC-EEEEEEEEEEETT
T ss_pred             CCceEEECCCCeEEEEEEECCC-CCCHHHHHHHHHHHHHHHHHH-cCCCeEecCCCCeEEecCCCC-CEEEEeeeeeeCC
Confidence            9999999999999999999987 789999999999999999999 99999998889999999   8 9999999999999


Q ss_pred             EEEEeeeeecCCCccccccccCCCCCCCCeeeeccccCCCCCHHHHHHHHHHHHHHhhccccccc
Q psy6495         160 ITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECECSEV  224 (235)
Q Consensus       160 vt~hG~alNv~~dl~~f~~i~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~~~~~~  224 (235)
                      +|+||++||+++||++|..|+|||+.++.||||+++++.++++++++++++++|++.|+......
T Consensus       156 vt~HG~aLNv~~dL~~f~~I~pcgi~~k~vtSl~~~lg~~~~~~ev~~~l~~~f~~~~~~~~~~~  220 (232)
T 1w66_A          156 TTLHGFALNCDCDLAAFTAIVPCGISDAAVTSLSAELGRTVTVDEVRATVAAAVCAALDGVLPVG  220 (232)
T ss_dssp             EEEEEEEEESSCCCGGGGGSCGGGCSSSEECCHHHHHTSCCCHHHHHHHHHHHHHHHHTTCCC--
T ss_pred             EEEcceEEecCcChHHhcCccccccCCCceeeeHHHhCCCCCHHHHHHHHHHHHHHHhCcccccc
Confidence            99999999999999999999999999999999998899999999999999999999999876443
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus} PDB: 2qht_A 2qhu_A 2qhv_A Back     alignment and structure
>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, 10425H, structural genomics, structure initiative, PSI-2; 2.04A {Streptococcus agalactiae} SCOP: d.104.1.3 Back     alignment and structure
>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} SCOP: d.104.1.3 Back     alignment and structure
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A Back     alignment and structure
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3 Back     alignment and structure
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A* Back     alignment and structure
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A Back     alignment and structure
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A* Back     alignment and structure
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ... Back     alignment and structure
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A* Back     alignment and structure
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii} Back     alignment and structure
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A Back     alignment and structure
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP} Back     alignment and structure
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A* Back     alignment and structure
>2ddz_A 190AA long hypothetical protein; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; 2.24A {Pyrococcus horikoshii} SCOP: d.104.1.4 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 235
d1w66a1216 d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycoba 7e-42
d2c8ma1256 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Ther 3e-28
d1x2ga2246 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal do 5e-21
d1vqza2241 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-te 4e-20
d2p5ia1265 d.104.1.3 (A:14-278) Hypothetical protein BH3822 { 9e-20
d2p0la1269 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Stre 1e-15
>d1w66a1 d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 216 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: LplA-like
domain: Lipoyltransferase LipB
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  139 bits (352), Expect = 7e-42
 Identities = 69/218 (31%), Positives = 90/218 (41%), Gaps = 13/218 (5%)

Query: 3   KQVQLVRLGVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEY 62
             + + +LG V Y    ++Q    +         +  + TLLLLEH  VYT G R+    
Sbjct: 10  SAIDVRQLGTVDYRTAWQLQRELADARV------AGGADTLLLLEHPAVYTAGRRTETHE 63

Query: 63  DENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQ 122
                            T+RGG IT+HGPGQLV YPII L      + +  +  E  +  
Sbjct: 64  RPIDG-------TPVVDTDRGGKITWHGPGQLVGYPIIGLAEPLDVVNYVRRLEESLIQV 116

Query: 123 LCKQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHITPC 182
                             +      KV AIGV  S   T HG A+NCD DL  F  I PC
Sbjct: 117 CADLGLHAGRVDGRSGVWLPGRPARKVAAIGVRVSRATTLHGFALNCDCDLAAFTAIVPC 176

Query: 183 GIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECE 220
           GI D  VTSLS  L + +TVD V         +  +  
Sbjct: 177 GISDAAVTSLSAELGRTVTVDEVRATVAAAVCAALDGV 214
>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma acidophilum [TaxId: 2303]} Length = 256 Back     information, alignment and structure
>d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 246 Back     information, alignment and structure
>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 241 Back     information, alignment and structure
>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus halodurans [TaxId: 86665]} Length = 265 Back     information, alignment and structure
>d2p0la1 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Streptococcus agalactiae [TaxId: 1311]} Length = 269 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query235
d1w66a1216 Lipoyltransferase LipB {Mycobacterium tuberculosis 100.0
d2p0la1269 Lipoate-protein ligase A {Streptococcus agalactiae 100.0
d2c8ma1256 Lipoate-protein ligase A {Thermoplasma acidophilum 100.0
d1vqza2241 LplA-like protein SP1160, N-terminal domain {Strep 100.0
d2p5ia1265 Hypothetical protein BH3822 {Bacillus halodurans [ 100.0
d1x2ga2246 Two-domain LplA, N-terminal domain {Escherichia co 100.0
d2zgwa2188 Biotin--[acetyl-CoA-carboxylase] ligase catalytic 99.26
d1biaa3207 Biotin repressor/biotin holoenzyme synthetase, cat 98.65
d2ddza1188 Uncharacterized protein PH0223 {Pyrococcus horikos 96.05
>d1w66a1 d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: LplA-like
domain: Lipoyltransferase LipB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.5e-64  Score=429.62  Aligned_cols=204  Identities=39%  Similarity=0.628  Sum_probs=188.9

Q ss_pred             CceeEEEEcCCCCHHHHHHHHHHHHHHHHhccCCCCCCccEEEEEEeCCeEEEccCcccccchhhHhhhccCCCcEEEec
Q psy6495           2 TKQVQLVRLGVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTN   81 (235)
Q Consensus         2 ~~~~~~~~lg~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~TiGr~~~~~~~~~~~~~l~~~gi~v~r~~   81 (235)
                      ++.+.+.+||.+||+++|++|+++++.+.++    .+|  ++||+|||||||+|+++ +.      +.+...++||++++
T Consensus         9 ~~~i~i~~LG~v~Y~~a~~~q~~~~~~~~~~----~~d--~llllEH~pVyT~G~~~-~~------~~~~~~~i~v~~td   75 (216)
T d1w66a1           9 LSAIDVRQLGTVDYRTAWQLQRELADARVAG----GAD--TLLLLEHPAVYTAGRRT-ET------HERPIDGTPVVDTD   75 (216)
T ss_dssp             CSCCEEEEEEECCHHHHHHHHHHHHHHHHTT----CCC--EEEEEECCSEEEECTTC-CG------GGSCTTCCCCEECS
T ss_pred             CCceEEEECCccCHHHHHHHHHHHHHHHhCC----CCC--eEEEEecCCceeecccC-cc------ccccccccceeecC
Confidence            3679999999999999999999999998864    467  99999999999999987 22      23445699999999


Q ss_pred             cCCceEEEcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhhcCCeeEeeCCCceEEeCCC--CceeeeceeeeCc
Q psy6495          82 RGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVFLDDE--YKVCAIGVHSSLY  159 (235)
Q Consensus        82 rGGg~tyHgpGQLv~y~il~l~~~~~~~~~~~~~le~~vi~~L~~~~Gi~a~~~~~~~gv~v~~~--rKIa~iG~~~~~~  159 (235)
                      |||++|||||||||+|||+|+++ ..++++|++.||++++++|++ |||++.+.++.+|||+++.  +||||+|+++++|
T Consensus        76 RGG~vTyHGPGQlV~Ypil~l~~-~~~~~~~v~~le~~ii~~l~~-~gi~~~~~~~~~GVwv~~~~~~KIasiGv~v~~~  153 (216)
T d1w66a1          76 RGGKITWHGPGQLVGYPIIGLAE-PLDVVNYVRRLEESLIQVCAD-LGLHAGRVDGRSGVWLPGRPARKVAAIGVRVSRA  153 (216)
T ss_dssp             SSSSEEEECTTEEEEEEECBBCS-SCCHHHHHHHHHHHHHHHHHH-TTCCCEEETTEEEEEECSSSCEEEEEEEEEEETT
T ss_pred             CCceEEEecCCceeeEEEecccc-ccchhhhHHHHHHHHHHHHHh-ccccccccccCCceeeecchhhHHHHHHHHhccc
Confidence            99999999999999999999976 679999999999999999999 9999999998999999861  4999999999999


Q ss_pred             EEEEeeeeecCCCccccccccCCCCCCCCeeeeccccCCCCCHHHHHHHHHHHHHHhhccc
Q psy6495         160 ITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECE  220 (235)
Q Consensus       160 vt~hG~alNv~~dl~~f~~i~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~~  220 (235)
                      +|+||+||||++||++|+.|+|||+++..||||++++|.++++++|++.++++|++.|+..
T Consensus       154 vt~HG~alNv~~dL~~f~~I~pCGl~~~~vtSl~~~lg~~v~~~ev~~~l~~~~~~~f~~~  214 (216)
T d1w66a1         154 TTLHGFALNCDCDLAAFTAIVPCGISDAAVTSLSAELGRTVTVDEVRATVAAAVCAALDGV  214 (216)
T ss_dssp             EEEEEEEEESSCCCGGGGGSCGGGCSSSEECCHHHHHTSCCCHHHHHHHHHHHHHHHHTTC
T ss_pred             eeecceEEeccCChhhcCeEEcCCCCCCceeeeHHHhCCCCCHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999999999999999999889999999999999999999999754
>d2p0la1 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Streptococcus agalactiae [TaxId: 1311]} Back     information, alignment and structure
>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2zgwa2 d.104.1.2 (A:1-188) Biotin--[acetyl-CoA-carboxylase] ligase catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1biaa3 d.104.1.2 (A:64-270) Biotin repressor/biotin holoenzyme synthetase, catalytic (central) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ddza1 d.104.1.4 (A:3-190) Uncharacterized protein PH0223 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure