Psyllid ID: psy6566

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120------
Protein Sequence
MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE
Secondary Structure (PSIPRED)
ccccEEEcccccEEEEEEEEccEEEEEEEEcccccccccHHHHcccccEEEEEEEcccHHHHHHHHHHHHHHcccccccccEEEEEEccccccccccHHHHHHHccccccccccEEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEccEEEEEEEEccEEEEEEEEcccccccHHHHHHHHcccEEEEEEEcccHHHHHHHHHHHHHHHccHHHcccEEEEEEEcccccccccHHHHHHHHcHHHcccccEEEEEcEccccE
Coil and Loop (DISEMBL)
mnevvhtsptigsnVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKqdiknsmspveisNLLDLTSIKKQQWHIQSCCALTGE
Flexible Loop (DISEMBL)
mnevvhtsptigsnVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE
Low Complexity Region (SEG)
MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE
Disordered region (IsUnstruct)
**********IGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCAL***
Disordered Region (DISOPRED)
MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTG*
Disordered Region (DISEMBL)
*********TIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE
Disordered Region (DISPRO)
*NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALT**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	126	2.2.26 [Sep-21-2011]
Q2KJ96	179	ADP-ribosylation factor-l	yes	N/A	1.0	0.703	0.738	2e-53
P51646	179	ADP-ribosylation factor-l	yes	N/A	1.0	0.703	0.738	3e-53
Q9Y689	179	ADP-ribosylation factor-l	no	N/A	1.0	0.703	0.738	3e-53
Q9D4P0	179	ADP-ribosylation factor-l	yes	N/A	1.0	0.703	0.730	5e-53
Q96KC2	179	ADP-ribosylation factor-l	no	N/A	1.0	0.703	0.730	5e-53
Q80ZU0	179	ADP-ribosylation factor-l	no	N/A	1.0	0.703	0.738	5e-53
Q6P068	179	ADP-ribosylation factor-l	no	N/A	0.992	0.698	0.672	1e-47
Q55AD9	183	ADP-ribosylation factor-l	yes	N/A	1.0	0.688	0.626	4e-45
A6NH57	179	Putative ADP-ribosylation	no	N/A	0.992	0.698	0.64	6e-43
P34212	178	ADP-ribosylation factor-l	yes	N/A	0.968	0.685	0.536	1e-36

>sp|Q2KJ96|ARL5A_BOVIN ADP-ribosylation factor-like protein 5A OS=Bos taurus GN=ARL5A PE=2 SV=1

 Score =  206 bits (525), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 93/126 (73%), Positives = 110/126 (87%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           MNEVVHTSPTIGSNVEE++  N  F+MWD+GGQ+SLR++W+TYYTNTEFVI+V+DSTDRE
Sbjct: 38  MNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 97

Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           RIS+T+EELYKML HEDL KA +LI+ANKQD+K  M+  EIS  L LTSIK  QWHIQ+C
Sbjct: 98  RISVTREELYKMLAHEDLRKAGLLIFANKQDVKGCMTVAEISQFLKLTSIKDHQWHIQAC 157

Query: 121 CALTGE 126
           CALTGE
Sbjct: 158 CALTGE 163

Lacks ADP-ribosylation enhancing activity.
Bos taurus (taxid: 9913)

>sp|P51646|ARL5A_RAT ADP-ribosylation factor-like protein 5A OS=Rattus norvegicus GN=Arl5a PE=2 SV=1

 Score =  206 bits (524), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 93/126 (73%), Positives = 110/126 (87%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           MNEVVHTSPTIGSNVEE++  N  F+MWD+GGQ+SLR++W+TYYTNTEFVI+V+DSTDRE
Sbjct: 38  MNEVVHTSPTIGSNVEEIVVNNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 97

Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           RIS+T+EELYKML HEDL KA +LI+ANKQD+K  M+  EIS  L LTSIK  QWHIQ+C
Sbjct: 98  RISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQAC 157

Query: 121 CALTGE 126
           CALTGE
Sbjct: 158 CALTGE 163

Lacks ADP-ribosylation enhancing activity.

Rattus norvegicus (taxid: 10116)

>sp|Q9Y689|ARL5A_HUMAN ADP-ribosylation factor-like protein 5A OS=Homo sapiens GN=ARL5A PE=1 SV=1

 Score =  206 bits (524), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 93/126 (73%), Positives = 110/126 (87%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           MNEVVHTSPTIGSNVEE++  N  F+MWD+GGQ+SLR++W+TYYTNTEFVI+V+DSTDRE
Sbjct: 38  MNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 97

Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           RIS+T+EELYKML HEDL KA +LI+ANKQD+K  M+  EIS  L LTSIK  QWHIQ+C
Sbjct: 98  RISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQAC 157

Query: 121 CALTGE 126
           CALTGE
Sbjct: 158 CALTGE 163

Lacks ADP-ribosylation enhancing activity.

Homo sapiens (taxid: 9606)

>sp|Q9D4P0|ARL5B_MOUSE ADP-ribosylation factor-like protein 5B OS=Mus musculus GN=Arl5b PE=2 SV=3

 Score =  206 bits (523), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 92/126 (73%), Positives = 111/126 (88%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           MNEVVHTSPTIGSNVEE++ KN HF+MWD+GGQ+SLR++W+TYY+NTEF+ILV+DS DRE
Sbjct: 38  MNEVVHTSPTIGSNVEEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRE 97

Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           R+++TKEELY+ML HEDL KAAVLI+ANKQD+K  M+  EIS  L L+SIK   WHIQSC
Sbjct: 98  RLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSC 157

Query: 121 CALTGE 126
           CALTGE
Sbjct: 158 CALTGE 163

Binds and exchanges GTP and GDP.

Mus musculus (taxid: 10090)

>sp|Q96KC2|ARL5B_HUMAN ADP-ribosylation factor-like protein 5B OS=Homo sapiens GN=ARL5B PE=1 SV=1

 Score =  206 bits (523), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 92/126 (73%), Positives = 111/126 (88%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           MNEVVHTSPTIGSNVEE++ KN HF+MWD+GGQ+SLR++W+TYY+NTEF+ILV+DS DRE
Sbjct: 38  MNEVVHTSPTIGSNVEEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRE 97

Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           R+++TKEELY+ML HEDL KAAVLI+ANKQD+K  M+  EIS  L L+SIK   WHIQSC
Sbjct: 98  RLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSC 157

Query: 121 CALTGE 126
           CALTGE
Sbjct: 158 CALTGE 163

Binds and exchanges GTP and GDP.

Homo sapiens (taxid: 9606)

>sp|Q80ZU0|ARL5A_MOUSE ADP-ribosylation factor-like protein 5A OS=Mus musculus GN=Arl5a PE=2 SV=1

 Score =  205 bits (522), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 93/126 (73%), Positives = 109/126 (86%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           MNEVVHTSPTIGSNVEE++  N  F+MWD+GGQ+SLR +W+TYYTNTEFVI+V+DSTDRE
Sbjct: 38  MNEVVHTSPTIGSNVEEIVVNNTRFLMWDIGGQESLRPSWNTYYTNTEFVIVVVDSTDRE 97

Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           RIS+T+EELYKML HEDL KA +LI+ANKQD+K  M+  EIS  L LTSIK  QWHIQ+C
Sbjct: 98  RISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQAC 157

Query: 121 CALTGE 126
           CALTGE
Sbjct: 158 CALTGE 163

Lacks ADP-ribosylation enhancing activity.

Mus musculus (taxid: 10090)

>sp|Q6P068|ARL5C_MOUSE ADP-ribosylation factor-like protein 5C OS=Mus musculus GN=Arl5c PE=2 SV=1

 Score =  187 bits (476), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 84/125 (67%), Positives = 101/125 (80%)

Query: 2   NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER 61
           NEVVHT  TIGSNVEE++ +  HF+MWDLGGQ++LR+ W TYY+N EFVILVIDSTDR R
Sbjct: 39  NEVVHTCSTIGSNVEEIVLRKTHFLMWDLGGQEALRSTWDTYYSNAEFVILVIDSTDRNR 98

Query: 62  ISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC 121
           +  T+EELYKML HE L  A+VLI+ANKQD+K+SM+  EIS  L L++IK   WHIQ CC
Sbjct: 99  LLTTREELYKMLAHEALQNASVLIFANKQDVKDSMTTAEISQFLTLSAIKDHPWHIQGCC 158

Query: 122 ALTGE 126
           ALTGE
Sbjct: 159 ALTGE 163

Binds and exchanges GTP and GDP.

Mus musculus (taxid: 10090)

>sp|Q55AD9|ARL5_DICDI ADP-ribosylation factor-like protein 5 OS=Dictyostelium discoideum GN=arl5 PE=3 SV=1

 Score =  179 bits (455), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 79/126 (62%), Positives = 104/126 (82%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           ++EVV T+PT+GSN+EE +++NI  +MWDLGGQ  LR+ W+ YY NT+ VILVIDSTDR 
Sbjct: 42  LDEVVSTTPTVGSNLEEFVYRNIRLLMWDLGGQDLLRSTWNQYYINTQAVILVIDSTDRA 101

Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           R++L KEEL+KML HE+L K+ +LIYANKQD+K++MSP E+S LL L SIK   +HIQ+C
Sbjct: 102 RVNLIKEELFKMLAHENLKKSIILIYANKQDLKDAMSPTELSTLLSLHSIKDHDYHIQAC 161

Query: 121 CALTGE 126
           CALTG+
Sbjct: 162 CALTGQ 167

May bind and exchange GTP and GDP.

Dictyostelium discoideum (taxid: 44689)

>sp|A6NH57|ARL5C_HUMAN Putative ADP-ribosylation factor-like protein 5C OS=Homo sapiens GN=ARL5C PE=2 SV=4

 Score =  172 bits (436), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 80/125 (64%), Positives = 97/125 (77%)

Query: 2   NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER 61
           NEVVH  PTIGSNVEE+I    HF MWD+   ++L   W+TYY+NTEF+ILVIDSTDR+R
Sbjct: 39  NEVVHMCPTIGSNVEEIILPKTHFFMWDIVRPEALSFIWNTYYSNTEFIILVIDSTDRDR 98

Query: 62  ISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC 121
           +  T+EELYKML HE L  A+VLI+ANKQD+K+SM  VEIS+ L L++IK   WHIQ CC
Sbjct: 99  LLTTREELYKMLAHEALQDASVLIFANKQDVKDSMRMVEISHFLTLSTIKDHSWHIQGCC 158

Query: 122 ALTGE 126
           ALT E
Sbjct: 159 ALTRE 163

Binds and exchanges GTP and GDP.

Homo sapiens (taxid: 9606)

>sp|P34212|ARL5_CAEEL ADP-ribosylation factor-like protein 5 OS=Caenorhabditis elegans GN=arl-5 PE=3 SV=3

 Score =  151 bits (381), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 66/123 (53%), Positives = 94/123 (76%), Gaps = 1/123 (0%)

Query: 5   VHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISL 64
           V T PTIGSNVEEV ++N+ F++WD+GGQ+SLR +WSTYY  T+ VI+VIDS+D  RI +
Sbjct: 43  VETKPTIGSNVEEVSYRNLDFVIWDIGGQESLRKSWSTYYVQTDVVIVVIDSSDTTRIPI 102

Query: 65  TKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIK-KQQWHIQSCCAL 123
            KE+L+ ML HEDL++A +L+ ANKQD+  +M+P E+S  L L +++  ++W I  CCA+
Sbjct: 103 MKEQLHNMLQHEDLARAHILVLANKQDLPGAMNPAEVSTQLGLQTLRGARKWQINGCCAV 162

Query: 124 TGE 126
            GE
Sbjct: 163 KGE 165

GTP-binding protein that may be involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
157137269	179	adp-ribosylation factor, arf [Aedes aegy	1.0	0.703	0.825	6e-59
332029592	179	ADP-ribosylation factor-like protein 5B	1.0	0.703	0.841	6e-59
332374338	179	unknown [Dendroctonus ponderosae]	1.0	0.703	0.841	7e-59
307202020	164	ADP-ribosylation factor-like protein 5B	1.0	0.768	0.841	8e-59
340723150	179	PREDICTED: ADP-ribosylation factor-like	1.0	0.703	0.841	9e-59
350425358	179	PREDICTED: ADP-ribosylation factor-like	1.0	0.703	0.841	9e-59
66521734	179	PREDICTED: ADP-ribosylation factor-like	1.0	0.703	0.841	2e-58
91083747	179	PREDICTED: similar to adp-ribosylation f	1.0	0.703	0.849	2e-58
289741851	179	GTP-binding ADP-ribosylation factor Arf1	1.0	0.703	0.809	2e-58
195135344	179	GI16622 [Drosophila mojavensis] gi|19391	1.0	0.703	0.817	3e-58

>gi|157137269|ref|XP_001663965.1| adp-ribosylation factor, arf [Aedes aegypti] gi|170071250|ref|XP_001869853.1| ADP-ribosylation factor, arf [Culex quinquefasciatus] gi|108869750|gb|EAT33975.1| AAEL013761-PB [Aedes aegypti] gi|167867167|gb|EDS30550.1| ADP-ribosylation factor, arf [Culex quinquefasciatus]

 Score =  231 bits (590), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 104/126 (82%), Positives = 119/126 (94%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           MNEVVHTSPTIGSNVEE++WKNIHF++WDLGGQQSLRAAWSTYYTNTEF+I+VIDSTDRE
Sbjct: 38  MNEVVHTSPTIGSNVEEIVWKNIHFLVWDLGGQQSLRAAWSTYYTNTEFIIMVIDSTDRE 97

Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           R+++T+EELYKML HEDL+KA++L+YANKQD+K SMS  EIS  LDLTSIKK QWHIQSC
Sbjct: 98  RLAVTREELYKMLQHEDLTKASLLVYANKQDLKESMSAAEISKQLDLTSIKKHQWHIQSC 157

Query: 121 CALTGE 126
           CALTGE
Sbjct: 158 CALTGE 163

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332029592|gb|EGI69481.1| ADP-ribosylation factor-like protein 5B [Acromyrmex echinatior]

 Score =  231 bits (590), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 106/126 (84%), Positives = 116/126 (92%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           MNEVVHTSPTIGSNVEEV+WKNIHFIMWDLGGQQSLRAAWSTYYTNTEF+I+VIDSTDRE
Sbjct: 38  MNEVVHTSPTIGSNVEEVVWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFIIMVIDSTDRE 97

Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           R+ + +EELY MLNHE+LSKA VL+YANKQD+K SM+  EIS  LDLTSIKK QWHIQSC
Sbjct: 98  RLGMIREELYSMLNHEELSKANVLVYANKQDLKGSMTAAEISRQLDLTSIKKHQWHIQSC 157

Query: 121 CALTGE 126
           CALTGE
Sbjct: 158 CALTGE 163

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332374338|gb|AEE62310.1| unknown [Dendroctonus ponderosae]

 Score =  231 bits (589), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 106/126 (84%), Positives = 119/126 (94%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           MNEVVHTSPTIGSNVEEV+W+NIHFIMWDLGGQQSLRAAWSTYYTNTEFVI+V+DSTDRE
Sbjct: 38  MNEVVHTSPTIGSNVEEVVWRNIHFIMWDLGGQQSLRAAWSTYYTNTEFVIVVVDSTDRE 97

Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           R+S+ +EELYKML HE+LSKA+VL+YANKQD+K SMS  EIS  L+LTSIK+QQWHIQSC
Sbjct: 98  RLSMIREELYKMLAHEELSKASVLVYANKQDVKGSMSASEISKELNLTSIKQQQWHIQSC 157

Query: 121 CALTGE 126
           CALTGE
Sbjct: 158 CALTGE 163

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307202020|gb|EFN81584.1| ADP-ribosylation factor-like protein 5B [Harpegnathos saltator]

 Score =  231 bits (588), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 106/126 (84%), Positives = 116/126 (92%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           MNEVVHTSPTIGSNVEEV+WKNIHFIMWDLGGQQSLRAAWSTYYTNTEF+I+VIDSTDRE
Sbjct: 38  MNEVVHTSPTIGSNVEEVVWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFIIMVIDSTDRE 97

Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           R+ + +EELY MLNHE+LSKA VL+YANKQD+K SM+  EIS  LDLTSIKK QWHIQSC
Sbjct: 98  RLGVIREELYSMLNHEELSKANVLVYANKQDLKGSMTAAEISRQLDLTSIKKHQWHIQSC 157

Query: 121 CALTGE 126
           CALTGE
Sbjct: 158 CALTGE 163

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723150|ref|XP_003399959.1| PREDICTED: ADP-ribosylation factor-like protein 5B-like [Bombus terrestris]

 Score =  231 bits (588), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 106/126 (84%), Positives = 116/126 (92%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           MNEVVHTSPTIGSNVEEV+WKNIHFIMWDLGGQQSLRAAWSTYYTNTEF+I+VIDSTDRE
Sbjct: 38  MNEVVHTSPTIGSNVEEVVWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFIIMVIDSTDRE 97

Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           R+ + +EELY MLNHE+LSKA VL+YANKQD+K SM+  EIS  LDLTSIKK QWHIQSC
Sbjct: 98  RLGVIREELYSMLNHEELSKANVLVYANKQDLKGSMTAAEISRQLDLTSIKKHQWHIQSC 157

Query: 121 CALTGE 126
           CALTGE
Sbjct: 158 CALTGE 163

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350425358|ref|XP_003494096.1| PREDICTED: ADP-ribosylation factor-like protein 5B-like [Bombus impatiens] gi|383850389|ref|XP_003700778.1| PREDICTED: ADP-ribosylation factor-like protein 5B-like [Megachile rotundata] gi|307170203|gb|EFN62589.1| ADP-ribosylation factor-like protein 5B [Camponotus floridanus]

 Score =  231 bits (588), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 106/126 (84%), Positives = 116/126 (92%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           MNEVVHTSPTIGSNVEEV+WKNIHFIMWDLGGQQSLRAAWSTYYTNTEF+I+VIDSTDRE
Sbjct: 38  MNEVVHTSPTIGSNVEEVVWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFIIMVIDSTDRE 97

Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           R+ + +EELY MLNHE+LSKA VL+YANKQD+K SM+  EIS  LDLTSIKK QWHIQSC
Sbjct: 98  RLGVIREELYSMLNHEELSKANVLVYANKQDLKGSMTAAEISRQLDLTSIKKHQWHIQSC 157

Query: 121 CALTGE 126
           CALTGE
Sbjct: 158 CALTGE 163

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66521734|ref|XP_623433.1| PREDICTED: ADP-ribosylation factor-like protein 5B-like [Apis mellifera] gi|380027367|ref|XP_003697398.1| PREDICTED: ADP-ribosylation factor-like protein 5B-like [Apis florea]

 Score =  230 bits (586), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 106/126 (84%), Positives = 116/126 (92%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           MNEVVHTSPTIGSNVEEV+WKNIHFIMWDLGGQQSLRAAWSTYYTNTEF+I+VIDSTDRE
Sbjct: 38  MNEVVHTSPTIGSNVEEVVWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFIIMVIDSTDRE 97

Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           R+ + +EELY MLNHE+LSKA VL+YANKQD+K SM+  EIS  LDLTSIKK QWHIQSC
Sbjct: 98  RLCVIREELYSMLNHEELSKANVLVYANKQDLKGSMTAAEISRQLDLTSIKKHQWHIQSC 157

Query: 121 CALTGE 126
           CALTGE
Sbjct: 158 CALTGE 163

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91083747|ref|XP_971281.1| PREDICTED: similar to adp-ribosylation factor, arf [Tribolium castaneum] gi|270007893|gb|EFA04341.1| hypothetical protein TcasGA2_TC014635 [Tribolium castaneum]

 Score =  230 bits (586), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 107/126 (84%), Positives = 118/126 (93%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           MNEVVHTSPTIGSNVEEV+W+NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD+E
Sbjct: 38  MNEVVHTSPTIGSNVEEVVWRNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDKE 97

Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           R+S+ +EELYKML +E+LSKA VLIYANKQD+K SMS  EIS  LDLTSIK+QQWHIQ+C
Sbjct: 98  RLSVIREELYKMLANEELSKAGVLIYANKQDVKGSMSASEISKELDLTSIKQQQWHIQAC 157

Query: 121 CALTGE 126
           CALTGE
Sbjct: 158 CALTGE 163

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289741851|gb|ADD19673.1| GTP-binding ADP-ribosylation factor Arf1 [Glossina morsitans morsitans]

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 102/126 (80%), Positives = 119/126 (94%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           MNEVVHTSPTIGSNVEEV+W+NIHF++WDLGGQQSLRAAWSTYYTNTEF+I+VIDSTDRE
Sbjct: 38  MNEVVHTSPTIGSNVEEVVWRNIHFLVWDLGGQQSLRAAWSTYYTNTEFIIMVIDSTDRE 97

Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           R+++T+EELY+ML HEDLSKA++L+YANKQD+K S+S  EIS  LDLTSIKK QWHIQ+C
Sbjct: 98  RLAVTREELYRMLQHEDLSKASLLVYANKQDLKGSLSAAEISRQLDLTSIKKHQWHIQAC 157

Query: 121 CALTGE 126
           CALTGE
Sbjct: 158 CALTGE 163

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195135344|ref|XP_002012094.1| GI16622 [Drosophila mojavensis] gi|193918358|gb|EDW17225.1| GI16622 [Drosophila mojavensis]

 Score =  229 bits (584), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 103/126 (81%), Positives = 118/126 (93%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           MNEVVHTSPTIGSNVEEV+W+NIHF++WDLGGQQSLRAAWSTYYTNTE VI+VIDSTDRE
Sbjct: 38  MNEVVHTSPTIGSNVEEVVWRNIHFLVWDLGGQQSLRAAWSTYYTNTELVIMVIDSTDRE 97

Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           R+++T+EELY+ML HEDLSKA++L+YANKQD+K SMS  EIS  LDLTSIKK QWHIQ+C
Sbjct: 98  RLAVTREELYRMLQHEDLSKASLLVYANKQDLKGSMSAAEISRQLDLTSIKKHQWHIQAC 157

Query: 121 CALTGE 126
           CALTGE
Sbjct: 158 CALTGE 163

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
FB|FBgn0035866	179	CG7197 [Drosophila melanogaste	1.0	0.703	0.817	2.3e-55
ZFIN|ZDB-GENE-040718-28	179	arl5a "ADP-ribosylation factor	1.0	0.703	0.722	2.5e-49
UNIPROTKB|E1BQL0	179	ARL5B "Uncharacterized protein	1.0	0.703	0.738	3.2e-49
UNIPROTKB|Q2KJ96	179	ARL5A "ADP-ribosylation factor	1.0	0.703	0.738	3.2e-49
UNIPROTKB|F1PNW5	168	ARL5A "Uncharacterized protein	1.0	0.75	0.738	3.2e-49
UNIPROTKB|F1PNX0	142	ARL5A "Uncharacterized protein	1.0	0.887	0.738	3.2e-49
UNIPROTKB|Q9Y689	179	ARL5A "ADP-ribosylation factor	1.0	0.703	0.738	3.2e-49
RGD|621327	179	Arl5a "ADP-ribosylation factor	1.0	0.703	0.738	3.2e-49
UNIPROTKB|E1BPV3	179	ARL5B "Uncharacterized protein	1.0	0.703	0.730	4.1e-49
UNIPROTKB|E2RIG8	180	ARL5B "Uncharacterized protein	1.0	0.7	0.730	4.1e-49

FB|FBgn0035866 CG7197 [Drosophila melanogaster (taxid:7227)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 103/126 (81%), Positives = 118/126 (93%)

Query:     1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
             MNEVVHTSPTIGSNVEEV+W+NIHF++WDLGGQQSLRAAWSTYYTNTE VI+VIDSTDRE
Sbjct:    38 MNEVVHTSPTIGSNVEEVVWRNIHFLVWDLGGQQSLRAAWSTYYTNTELVIMVIDSTDRE 97

Query:    61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
             R+++T+EELY+ML HEDLSKA++L+YANKQD+K SMS  EIS  LDLTSIKK QWHIQ+C
Sbjct:    98 RLAVTREELYRMLQHEDLSKASLLVYANKQDLKGSMSAAEISRQLDLTSIKKHQWHIQAC 157

Query:   121 CALTGE 126
             CALTGE
Sbjct:   158 CALTGE 163

GO:0003924 "GTPase activity" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

ZFIN|ZDB-GENE-040718-28 arl5a "ADP-ribosylation factor-like 5A" [Danio rerio (taxid:7955)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 91/126 (72%), Positives = 111/126 (88%)

Query:     1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
             MNEVVHTSPTIGSNVEE++  N HF+MWD+GGQ+SLR++W+TYYTNTEFVI+V+DSTDRE
Sbjct:    38 MNEVVHTSPTIGSNVEEIVVNNTHFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 97

Query:    61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
             RIS+T+EELY+ML HEDL KA +LI+ANKQD+K  ++  EIS  L LTS+K  QWHIQ+C
Sbjct:    98 RISVTREELYRMLAHEDLKKAGLLIFANKQDVKGCLTVAEISQSLQLTSVKDHQWHIQAC 157

Query:   121 CALTGE 126
             CALTGE
Sbjct:   158 CALTGE 163

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E1BQL0 ARL5B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 93/126 (73%), Positives = 111/126 (88%)

Query:     1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
             MNEVVHTSPTIGSNVEE++ KN HF+MWD+GGQ+SLR++W+TYY+NTEF+ILV+DS DRE
Sbjct:    38 MNEVVHTSPTIGSNVEEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRE 97

Query:    61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
             R+S+TKEELY+ML HEDL KAAVLI+ANKQD+K  M+  EIS  L L+SIK   WHIQSC
Sbjct:    98 RLSITKEELYRMLAHEDLRKAAVLIFANKQDMKGCMTAAEISAYLTLSSIKDHPWHIQSC 157

Query:   121 CALTGE 126
             CALTGE
Sbjct:   158 CALTGE 163

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|Q2KJ96 ARL5A "ADP-ribosylation factor-like protein 5A" [Bos taurus (taxid:9913)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 93/126 (73%), Positives = 110/126 (87%)

Query:     1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
             MNEVVHTSPTIGSNVEE++  N  F+MWD+GGQ+SLR++W+TYYTNTEFVI+V+DSTDRE
Sbjct:    38 MNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 97

Query:    61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
             RIS+T+EELYKML HEDL KA +LI+ANKQD+K  M+  EIS  L LTSIK  QWHIQ+C
Sbjct:    98 RISVTREELYKMLAHEDLRKAGLLIFANKQDVKGCMTVAEISQFLKLTSIKDHQWHIQAC 157

Query:   121 CALTGE 126
             CALTGE
Sbjct:   158 CALTGE 163

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1PNW5 ARL5A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 93/126 (73%), Positives = 110/126 (87%)

Query:     1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
             MNEVVHTSPTIGSNVEE++  N  F+MWD+GGQ+SLR++W+TYYTNTEFVI+V+DSTDRE
Sbjct:    27 MNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 86

Query:    61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
             RIS+T+EELYKML HEDL KA +LI+ANKQD+K  M+  EIS  L LTSIK  QWHIQ+C
Sbjct:    87 RISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQAC 146

Query:   121 CALTGE 126
             CALTGE
Sbjct:   147 CALTGE 152

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1PNX0 ARL5A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 93/126 (73%), Positives = 110/126 (87%)

Query:     1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
             MNEVVHTSPTIGSNVEE++  N  F+MWD+GGQ+SLR++W+TYYTNTEFVI+V+DSTDRE
Sbjct:     1 MNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 60

Query:    61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
             RIS+T+EELYKML HEDL KA +LI+ANKQD+K  M+  EIS  L LTSIK  QWHIQ+C
Sbjct:    61 RISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQAC 120

Query:   121 CALTGE 126
             CALTGE
Sbjct:   121 CALTGE 126

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|Q9Y689 ARL5A "ADP-ribosylation factor-like protein 5A" [Homo sapiens (taxid:9606)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 93/126 (73%), Positives = 110/126 (87%)

Query:     1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
             MNEVVHTSPTIGSNVEE++  N  F+MWD+GGQ+SLR++W+TYYTNTEFVI+V+DSTDRE
Sbjct:    38 MNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 97

Query:    61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
             RIS+T+EELYKML HEDL KA +LI+ANKQD+K  M+  EIS  L LTSIK  QWHIQ+C
Sbjct:    98 RISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQAC 157

Query:   121 CALTGE 126
             CALTGE
Sbjct:   158 CALTGE 163

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

RGD|621327 Arl5a "ADP-ribosylation factor-like 5A" [Rattus norvegicus (taxid:10116)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 93/126 (73%), Positives = 110/126 (87%)

Query:     1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
             MNEVVHTSPTIGSNVEE++  N  F+MWD+GGQ+SLR++W+TYYTNTEFVI+V+DSTDRE
Sbjct:    38 MNEVVHTSPTIGSNVEEIVVNNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 97

Query:    61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
             RIS+T+EELYKML HEDL KA +LI+ANKQD+K  M+  EIS  L LTSIK  QWHIQ+C
Sbjct:    98 RISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQAC 157

Query:   121 CALTGE 126
             CALTGE
Sbjct:   158 CALTGE 163

GO:0005525 "GTP binding" evidence=TAS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|E1BPV3 ARL5B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 92/126 (73%), Positives = 111/126 (88%)

Query:     1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
             MNEVVHTSPTIGSNVEE++ KN HF+MWD+GGQ+SLR++W+TYY+NTEF+ILV+DS DRE
Sbjct:    38 MNEVVHTSPTIGSNVEEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRE 97

Query:    61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
             R+++TKEELY+ML HEDL KAAVLI+ANKQD+K  M+  EIS  L L+SIK   WHIQSC
Sbjct:    98 RLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSC 157

Query:   121 CALTGE 126
             CALTGE
Sbjct:   158 CALTGE 163

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|E2RIG8 ARL5B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 92/126 (73%), Positives = 111/126 (88%)

Query:     1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
             MNEVVHTSPTIGSNVEE++ KN HF+MWD+GGQ+SLR++W+TYY+NTEF+ILV+DS DRE
Sbjct:    39 MNEVVHTSPTIGSNVEEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRE 98

Query:    61 RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
             R+++TKEELY+ML HEDL KAAVLI+ANKQD+K  M+  EIS  L L+SIK   WHIQSC
Sbjct:    99 RLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSC 158

Query:   121 CALTGE 126
             CALTGE
Sbjct:   159 CALTGE 164

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P51646	ARL5A_RAT	No assigned EC number	0.7380	1.0	0.7039	yes	N/A
P19146	ARF2_YEAST	No assigned EC number	0.5158	1.0	0.6961	yes	N/A
P34212	ARL5_CAEEL	No assigned EC number	0.5365	0.9682	0.6853	yes	N/A
Q2KJ96	ARL5A_BOVIN	No assigned EC number	0.7380	1.0	0.7039	yes	N/A
Q9D4P0	ARL5B_MOUSE	No assigned EC number	0.7301	1.0	0.7039	yes	N/A
Q94650	ARF1_PLAFA	No assigned EC number	0.5	1.0	0.6961	yes	N/A
P36579	ARF1_SCHPO	No assigned EC number	0.4920	1.0	0.7	yes	N/A
Q7KQL3	ARF1_PLAF7	No assigned EC number	0.5	1.0	0.6961	yes	N/A
Q80ZU0	ARL5A_MOUSE	No assigned EC number	0.7380	1.0	0.7039	no	N/A
P11076	ARF1_YEAST	No assigned EC number	0.5079	1.0	0.6961	yes	N/A
P0CM16	ARF_CRYNJ	No assigned EC number	0.4761	1.0	0.6923	yes	N/A
Q9Y689	ARL5A_HUMAN	No assigned EC number	0.7380	1.0	0.7039	no	N/A
Q55AD9	ARL5_DICDI	No assigned EC number	0.6269	1.0	0.6885	yes	N/A
Q75A26	ARF_ASHGO	No assigned EC number	0.4920	1.0	0.6961	yes	N/A
Q96KC2	ARL5B_HUMAN	No assigned EC number	0.7301	1.0	0.7039	no	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	126
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	2e-82
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	5e-60
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	8e-59
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	1e-52
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	3e-52
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	9e-51
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	9e-47
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	2e-46
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	9e-44
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	7e-42
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	8e-41
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	2e-38
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	8e-36
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	5e-33
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	3e-32
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	7e-31
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	3e-22
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	3e-21
cd04161	167	cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A	5e-19
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	7e-19
smart00178	184	smart00178, SAR, Sar1p-like members of the Ras-fam	1e-16
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	2e-14
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	2e-07
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	2e-06
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-06
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	3e-06
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	7e-06
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	1e-05
pfam00503	329	pfam00503, G-alpha, G-protein alpha subunit	2e-05
cd04105	202	cd04105, SR_beta, Signal recognition particle rece	3e-05
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	4e-05
pfam08477	116	pfam08477, Miro, Miro-like protein	4e-05
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	7e-05
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	2e-04
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	3e-04
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	3e-04
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	3e-04
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	4e-04
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	0.001
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	0.001
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	0.002
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	0.002
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	0.002
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	0.003

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score =  238 bits (610), Expect = 2e-82
 Identities = 91/126 (72%), Positives = 109/126 (86%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + EVVHTSPTIGSNVEE+++KNI F+MWD+GGQ+SLR++W+TYYTNT+ VILVIDSTDRE
Sbjct: 37  LGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRE 96

Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           R+ LTKEELYKML HEDL KA +L+ ANKQD+K +M+P EIS  L LTSI+   WHIQ C
Sbjct: 97  RLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGC 156

Query: 121 CALTGE 126
           CALTGE
Sbjct: 157 CALTGE 162

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score =  181 bits (461), Expect = 5e-60
 Identities = 66/125 (52%), Positives = 88/125 (70%)

Query: 2   NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER 61
            EVV T PTIG NVE V +KN+ F +WD+GGQ  +R  W  YY NT+ +I V+DS+DRER
Sbjct: 22  GEVVTTIPTIGFNVETVEYKNVKFTVWDVGGQDKIRPLWKHYYENTDGLIFVVDSSDRER 81

Query: 62  ISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC 121
           I   K EL+K+LN E+L  A +LI ANKQD+  +++  E+  LL L SIK ++WHIQ C 
Sbjct: 82  IEEAKNELHKLLNEEELKGAPLLILANKQDLPGALTESELIELLGLESIKGRRWHIQPCS 141

Query: 122 ALTGE 126
           A+TG+
Sbjct: 142 AVTGD 146

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score =  178 bits (455), Expect = 8e-59
 Identities = 67/126 (53%), Positives = 88/126 (69%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + E+V T PTIG NVE V +KN+ F +WD+GGQ+SLR  W  Y+ NT+ VI V+DS DR+
Sbjct: 36  LGEIVTTIPTIGFNVETVTYKNVKFTVWDVGGQESLRPLWRNYFPNTDAVIFVVDSADRD 95

Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           RI   KEEL+ +LN E+L+ A +LI ANKQD+  +MS  EI  LL L  +K + W IQ C
Sbjct: 96  RIEEAKEELHALLNEEELADAPLLILANKQDLPGAMSEAEIRELLGLHELKDRPWEIQGC 155

Query: 121 CALTGE 126
            A+TGE
Sbjct: 156 SAVTGE 161

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score =  162 bits (412), Expect = 1e-52
 Identities = 60/126 (47%), Positives = 86/126 (68%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + EVV T PTIG NVE V +KN+ F +WDLGGQ S+R  W  YY+NT+ +I V+DSTDR+
Sbjct: 21  VGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD 80

Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           R+ ++K EL+ ML  E+L  A +L++ANKQD+  ++S  E++  L L+ +K + W I   
Sbjct: 81  RLGISKSELHAMLEEEELKDAVLLVFANKQDMPGALSEAEVAEKLGLSELKDRTWQIFKT 140

Query: 121 CALTGE 126
            A  GE
Sbjct: 141 SATKGE 146

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score =  161 bits (409), Expect = 3e-52
 Identities = 61/124 (49%), Positives = 89/124 (71%)

Query: 3   EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERI 62
           E+V T PTIG NVE V +KNI F +WD+GGQ  +R  W  Y+ NT+ +I V+DS DRERI
Sbjct: 24  EIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERI 83

Query: 63  SLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCA 122
              +EEL +MLN ++L  A +L++ANKQD+ N+MS  E+++ L L S++ + W+IQ+ CA
Sbjct: 84  GEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCA 143

Query: 123 LTGE 126
            +G+
Sbjct: 144 TSGD 147

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score =  158 bits (402), Expect = 9e-51
 Identities = 64/126 (50%), Positives = 88/126 (69%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + EVV T PTIG NVE V +KN+ F MWD+GGQ  LR  W  YY NT  +I V+DS DRE
Sbjct: 39  LGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRE 98

Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           RI   +EEL +ML+ ++L  A +L++ANKQD+ N+MS  E++  L L S++++ W+IQ C
Sbjct: 99  RIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGC 158

Query: 121 CALTGE 126
           CA T +
Sbjct: 159 CATTAQ 164

Length = 182

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score =  148 bits (375), Expect = 9e-47
 Identities = 62/126 (49%), Positives = 88/126 (69%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + E V T PTIG NVE V +KNI F +WD+GGQ  +R  W  YYTNT+ +I V+DS DR+
Sbjct: 35  LGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRD 94

Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           RI   +EEL++MLN ++L  A +L++ANKQD+ ++M   EI+  L L SI+ + W+IQ  
Sbjct: 95  RIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPT 154

Query: 121 CALTGE 126
           CA +G+
Sbjct: 155 CATSGD 160

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score =  148 bits (374), Expect = 2e-46
 Identities = 60/126 (47%), Positives = 92/126 (73%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + E+V T PTIG NVE V +KNI F +WD+GGQ  +R  W  Y+ NT+ +I V+DS DR+
Sbjct: 39  LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98

Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           R+   ++EL++MLN ++L  A +L++ANKQD+ N+M+  EI++ L L S++++ W+IQS 
Sbjct: 99  RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 158

Query: 121 CALTGE 126
           CA +GE
Sbjct: 159 CATSGE 164

Length = 181

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score =  140 bits (354), Expect = 9e-44
 Identities = 54/126 (42%), Positives = 86/126 (68%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + + V T PT+G NVE V +KN+ F +WD+GGQ  +R  W  YYT T+ +I V+DS DR+
Sbjct: 31  LGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRD 90

Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           RI   ++EL++++N  ++  A +L++ANKQD+ ++M P EI   L LT I+ + W++Q  
Sbjct: 91  RIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPS 150

Query: 121 CALTGE 126
           CA +G+
Sbjct: 151 CATSGD 156

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score =  135 bits (343), Expect = 7e-42
 Identities = 54/119 (45%), Positives = 80/119 (67%)

Query: 8   SPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKE 67
           SPT+G N++ + +      +WD+GGQ+SLR+ W  Y+ +T+ +I V+DS+DR R+   K 
Sbjct: 43  SPTLGFNIKTLEYNGYKLNIWDVGGQKSLRSYWRNYFESTDALIWVVDSSDRARLEDCKR 102

Query: 68  ELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126
           EL K+L  E L+ A +LI+ANKQD+  ++SP EI  +L+L SIK   W I  C A+TGE
Sbjct: 103 ELQKLLVEERLAGATLLIFANKQDLPGALSPEEIREVLELDSIKSHHWRIFGCSAVTGE 161

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score =  133 bits (336), Expect = 8e-41
 Identities = 49/124 (39%), Positives = 76/124 (61%)

Query: 3   EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERI 62
           ++ H +PT G N++ V        +WD+GGQ+ +R  W  Y+ NT+ +I VIDS DR+R 
Sbjct: 39  DISHITPTQGFNIKNVQADGFKLNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRF 98

Query: 63  SLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCA 122
               +EL ++L  E L+   VL++ANKQD+  +    E++  L+L  I+ + WHIQ+C A
Sbjct: 99  EEAGQELVELLEEEKLAGVPVLVFANKQDLLTAAPAEEVAEALNLHDIRDRSWHIQACSA 158

Query: 123 LTGE 126
            TGE
Sbjct: 159 KTGE 162

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score =  126 bits (319), Expect = 2e-38
 Identities = 52/123 (42%), Positives = 76/123 (61%), Gaps = 2/123 (1%)

Query: 6   HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
           +  PT+G NVE     N+ F  +D+ GQ   R  W  YY N + +I VIDS+DR R+ + 
Sbjct: 28  NIVPTVGFNVESFKKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRMVVA 87

Query: 66  KEELYKMLNHEDLSKAAV--LIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCAL 123
           K+EL  +LNH D+    +  L YANK D+ ++++ V+I+ LL L +IK + WHI +  AL
Sbjct: 88  KDELELLLNHPDIKHRRIPILFYANKMDLPDALTAVKITQLLCLENIKDKPWHIFASSAL 147

Query: 124 TGE 126
           TGE
Sbjct: 148 TGE 150

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score =  120 bits (302), Expect = 8e-36
 Identities = 45/126 (35%), Positives = 78/126 (61%), Gaps = 2/126 (1%)

Query: 3   EVVHTSPTIGSNVEEV-IWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER 61
           E+V T PT+G NVE + + K++   +WD+GGQ+ +R  W  Y  NT+ ++ V+DS+D  R
Sbjct: 23  ELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEAR 82

Query: 62  ISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSI-KKQQWHIQSC 120
           +  +++EL  +L +E +    V++ ANKQD+  +++  EI+    L      + W++Q C
Sbjct: 83  LDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPC 142

Query: 121 CALTGE 126
            A+TGE
Sbjct: 143 SAVTGE 148

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score =  113 bits (283), Expect = 5e-33
 Identities = 55/125 (44%), Positives = 81/125 (64%), Gaps = 1/125 (0%)

Query: 2   NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER 61
           +E +   PTIG NVE V +KN+ F +WD+GG+  LR  W  YY NT+ V+ VIDS+ R+R
Sbjct: 22  DEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVIDSSHRDR 81

Query: 62  ISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSI-KKQQWHIQSC 120
           +S    EL K+L  ++L  A +LI+ANKQD+  ++S  E++ LL L  +   + W+IQ C
Sbjct: 82  VSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGC 141

Query: 121 CALTG 125
            A +G
Sbjct: 142 DARSG 146

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score =  110 bits (278), Expect = 3e-32
 Identities = 47/120 (39%), Positives = 70/120 (58%), Gaps = 2/120 (1%)

Query: 9   PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEE 68
           PT+G N+  +       + WDLGGQ+ LR+ W  YY  +  VI VIDSTDRER + +K  
Sbjct: 37  PTVGLNIGTIEVGKARLMFWDLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSA 96

Query: 69  LYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLD--LTSIKKQQWHIQSCCALTGE 126
             K++N+E L    +L+ ANKQD+ +++S  EI  + D  +  I ++   +Q   AL GE
Sbjct: 97  FEKVINNEALEGVPLLVLANKQDLPDALSVAEIKEVFDDCIALIGRRDCLVQPVSALEGE 156

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score =  107 bits (270), Expect = 7e-31
 Identities = 50/132 (37%), Positives = 73/132 (55%), Gaps = 6/132 (4%)

Query: 1   MNEVVHTSPTIGSNVEEV-----IWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVID 55
            NE V+T PT G N E++       K + F  WD+GGQ+ LR  W +Y   T+ ++ V+D
Sbjct: 25  FNEFVNTVPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVD 84

Query: 56  STDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQ- 114
           S D ER+   K EL+K+    +     VL+ ANKQD+ N++   E+  LL L  +     
Sbjct: 85  SVDVERMEEAKTELHKITKFSENQGVPVLVLANKQDLPNALPVSEVEKLLALHELSSSTP 144

Query: 115 WHIQSCCALTGE 126
           WH+Q  CA+ GE
Sbjct: 145 WHVQPACAIIGE 156

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 86.2 bits (214), Expect = 3e-22
 Identities = 34/106 (32%), Positives = 56/106 (52%)

Query: 2   NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER 61
           + +    PT+    EE+   N+ F  +DLGG +  R  W  Y+   + ++ ++D+ D ER
Sbjct: 42  DRLAQHVPTLHPTSEELTIGNVKFTTFDLGGHEQARRVWKDYFPEVDGIVFLVDAADPER 101

Query: 62  ISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDL 107
              +KEEL  +LN E+L+   +LI  NK D   ++S  E+   L L
Sbjct: 102 FQESKEELDSLLNDEELANVPILILGNKIDKPGAVSEEELREALGL 147

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 82.8 bits (205), Expect = 3e-21
 Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 4/118 (3%)

Query: 4   VVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERIS 63
              T PT+G N+ +V   N+   +WDLGGQ   R+ W  Y      ++ V+D+ DRE++ 
Sbjct: 25  SEDTIPTVGFNMRKVTKGNVTIKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADREKLE 84

Query: 64  LTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC 121
           + K EL+ +L    L    +L+  NK D+  ++S  E+   ++L SI  ++      C
Sbjct: 85  VAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREV----SC 138

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13

 Score = 77.0 bits (190), Expect = 5e-19
 Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 7   TSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK 66
            +PT+G    ++        ++DLGG  + R  W  YY     ++ V+DS+D +R+   K
Sbjct: 27  VAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVK 86

Query: 67  EELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQ---WHIQSCCAL 123
           E L ++L H  +S   +L+ ANKQD KN++   ++   L L  +  +     HI+ C A+
Sbjct: 87  EILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAI 146

Query: 124 TG 125
            G
Sbjct: 147 EG 148

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 76.7 bits (189), Expect = 7e-19
 Identities = 38/116 (32%), Positives = 66/116 (56%), Gaps = 5/116 (4%)

Query: 7   TSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK 66
             PT G N   +  ++    + ++GG Q+LR  W  Y + ++ +I V+DS D ER+ L +
Sbjct: 28  VVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLAR 87

Query: 67  EELYKMLNHE-DLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSI-KKQQWHIQSC 120
           +EL+++L H  DL    +++ ANKQD+  + S  EI   L+L  I + ++W +Q  
Sbjct: 88  QELHQLLQHPPDLP---LVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGT 140

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases

 Score = 71.5 bits (175), Expect = 1e-16
 Identities = 35/106 (33%), Positives = 54/106 (50%)

Query: 9   PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEE 68
           PT     EE+   NI F  +DLGG Q  R  W  Y+     ++ ++D+ D+ER + +K E
Sbjct: 47  PTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRE 106

Query: 69  LYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQ 114
           L  +L+ E+L+    LI  NK D   + S  E+   L LT+    +
Sbjct: 107 LDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTTGK 152

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 66.1 bits (161), Expect = 2e-14
 Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 4/98 (4%)

Query: 8   SPTIGSNV----EEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERIS 63
            PTIG+       E   +NI   +WD  GQ+  R+    YY     +++V DST RE   
Sbjct: 35  PPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSD 94

Query: 64  LTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEI 101
              EE  + L         +L+  NK D+ +  S  E 
Sbjct: 95  ELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEE 132

Length = 219

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 46.6 bits (111), Expect = 2e-07
 Identities = 23/110 (20%), Positives = 36/110 (32%), Gaps = 6/110 (5%)

Query: 4   VVHTSPTIGSN----VEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR 59
           +    P    N    V E   K   F + D  GQ+   A    YY   E  + V D    
Sbjct: 28  ITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYDAIRRLYYRAVESSLRVFDIVIL 87

Query: 60  -ERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK-NSMSPVEISNLLDL 107
              +    E+  K + H   S   +++  NK D++   +          L
Sbjct: 88  VLDVEEILEKQTKEIIHHAESGVPIILVGNKIDLRDAKLKTHVAFLFAKL 137

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 44.4 bits (105), Expect = 2e-06
 Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 4/81 (4%)

Query: 27  MWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIY 86
           ++   GQ+  +  W          I+++DS+    I+   EE+   L   +     V++ 
Sbjct: 72  LFGTPGQERFKFMWEILSRGAVGAIVLVDSSRP--ITFHAEEIIDFLTSRN--PIPVVVA 127

Query: 87  ANKQDIKNSMSPVEISNLLDL 107
            NKQD+ +++ P +I   L L
Sbjct: 128 INKQDLFDALPPEKIREALKL 148

Length = 187

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 44.0 bits (104), Expect = 2e-06
 Identities = 24/128 (18%), Positives = 42/128 (32%), Gaps = 12/128 (9%)

Query: 6   HTSPTIGSNVEEVIW--KNIHFIMWDLGGQQSLRAAWST-----YYTNTEFVILVIDSTD 58
               T   +V         +  ++ D  G                    + ++LV+DSTD
Sbjct: 28  VPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEFGGLGREELARLLLRGADLILLVVDSTD 87

Query: 59  RERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQ 118
           RE     ++    +L         +++  NK D+       E+  L +L   K     + 
Sbjct: 88  RESE---EDAKLLILRRLRKEGIPIILVGNKIDLLEEREVEELLRLEEL--AKILGVPVF 142

Query: 119 SCCALTGE 126
              A TGE
Sbjct: 143 EVSAKTGE 150

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 43.7 bits (103), Expect = 3e-06
 Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 9/123 (7%)

Query: 10  TIGSNVE----EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
           TIG + E    EV+       +WD  GQ+  +   STYY   + +I+V D TD   +  T
Sbjct: 32  TIGVDFEMERFEVLGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHT 91

Query: 66  KEELYKMLNHEDLSKAAVLIYANKQDIKN--SMSPVEISNLLDLTSIKKQQWHIQSCCAL 123
           ++ L   L   D S   + +   K+D+ +    + +E   +     +K + W   +  AL
Sbjct: 92  RQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAREMKAEYW---AVSAL 148

Query: 124 TGE 126
           TGE
Sbjct: 149 TGE 151

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 42.7 bits (100), Expect = 7e-06
 Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 14/88 (15%)

Query: 8   SPTIGSNVE----EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERIS 63
           +PTIG + +     V  K +   +WD  GQ+  R   S+YY N + +ILV D T RE  +
Sbjct: 43  APTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFT 102

Query: 64  LTKEELYKMLNHEDLSKAAVLIYANKQD 91
                     N  D+    V +Y+  QD
Sbjct: 103 ----------NLSDVWGKEVELYSTNQD 120

Length = 211

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 30/93 (32%), Positives = 39/93 (41%), Gaps = 12/93 (12%)

Query: 7   TSPTIG----SNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERI 62
            S TIG         V  K +   +WD  GQ+  R   S+YY   + VILV D T R+  
Sbjct: 29  LSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRD-- 86

Query: 63  SLTKEELYKMLNHEDL----SKAAVLIYANKQD 91
             T + L   LN  D       A  ++  NK D
Sbjct: 87  --TFDNLDTWLNELDTYSTNPDAVKMLVGNKID 117

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 16/97 (16%)

Query: 9   PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVI------------DS 56
            T G    +  +K + F ++D+GGQ+S R  W   + +   +I V+            DS
Sbjct: 154 KTTGIIETKFDFKGLKFRLFDVGGQRSERKKWIHCFEDVTAIIFVVSLSEYDQVLYEDDS 213

Query: 57  TDRERISLTKEELYK-MLNHEDLSKAAVLIYANKQDI 92
           T+R   SL    L++ + N        ++++ NK+D+
Sbjct: 214 TNRLEESL---NLFEEICNSPWFKNTPIILFLNKKDL 247

G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA. Length = 329

>gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP)

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 6/89 (6%)

Query: 21  KNIHFIMWDLGGQQSLRAAWSTYYTNTEF-VILVIDSTDRER-ISLTKEELYKMLNHEDL 78
           K +  +  D+ G + LR     Y   +   ++ V+DS   ++ I    E LY +L   + 
Sbjct: 47  KKLTLV--DVPGHEKLRDKLLEYLKASLKAIVFVVDSATFQKNIRDVAEFLYDILTDLEK 104

Query: 79  SKAA--VLIYANKQDIKNSMSPVEISNLL 105
            K    +LI  NKQD+  +    +I  LL
Sbjct: 105 IKNKIPILIACNKQDLFTAKPAKKIKELL 133

Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 40.5 bits (96), Expect = 4e-05
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 7/94 (7%)

Query: 6   HTSPTIGSNVE----EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER 61
           +   TIG + +    EV  K +   +WD  GQ+  R+  S+YY      ILV D T+RE 
Sbjct: 28  NYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQERFRSITSSYYRGAHGAILVYDVTNRE- 86

Query: 62  ISLTK-EELYKMLNHEDLSKAAVLIYANKQDIKN 94
            S    ++    L         +++  NK D+++
Sbjct: 87  -SFENLDKWLNELKEYAPPNIPIILVGNKSDLED 119

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 39.7 bits (93), Expect = 4e-05
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 5/87 (5%)

Query: 7   TSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR---ERIS 63
              T+  +  EV        +WD GG++ L+     +    + ++LV D TDR     +S
Sbjct: 32  QGDTLAVDTLEVDGDTGLLNIWDFGGREELKFEHIIFMKWADAILLVYDLTDRESLNEVS 91

Query: 64  LTKEELYKMLNHEDLSKAAVLIYANKQ 90
                L  +       K  V++  NK 
Sbjct: 92  RLIAWLPNLRKLG--GKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score = 39.5 bits (93), Expect = 7e-05
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 11/81 (13%)

Query: 21  KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK-----EELYKMLNH 75
           K I   +WD  GQ+   A    YY + +  ILV D TD +  S  K     +EL +M   
Sbjct: 47  KRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDAD--SFQKVKKWIKELKQMRG- 103

Query: 76  EDLSKAAVLIYANKQDIKNSM 96
              +  +++I  NK D++   
Sbjct: 104 ---NNISLVIVGNKIDLERQR 121

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 21  KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK 80
           K +   +WD  GQ+  RA  S YY      +LV D T R+     +  L ++ +H D S 
Sbjct: 59  KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD-SN 117

Query: 81  AAVLIYANKQDIKN 94
             +++  NK D+ +
Sbjct: 118 IVIMMAGNKSDLNH 131

Length = 216

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 38.5 bits (89), Expect = 3e-04
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 7/78 (8%)

Query: 17  EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEEL---YKML 73
           E+  K I   +WD  GQ+   +  S YY + + +ILV D T +E    T ++L    KM+
Sbjct: 43  ELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKE----TFDDLPKWMKMI 98

Query: 74  NHEDLSKAAVLIYANKQD 91
           +      A +L+  NK D
Sbjct: 99  DKYASEDAELLLVGNKLD 116

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 38.3 bits (89), Expect = 3e-04
 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 27  MWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIY 86
           +WD  GQ+  R   STYY  T  VI+V D T+ E     K  L ++  + D     VL+ 
Sbjct: 59  IWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVC-KVLV- 116

Query: 87  ANKQD 91
            NK D
Sbjct: 117 GNKND 121

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 17/64 (26%), Positives = 29/64 (45%)

Query: 29  DLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYAN 88
           D  GQ+   A    Y+ + E  +LV   TD E  +   E   ++L  ++     +L+  N
Sbjct: 54  DTAGQEDYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGN 113

Query: 89  KQDI 92
           K D+
Sbjct: 114 KCDL 117

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 37.8 bits (88), Expect = 4e-04
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 9  PTIGSN-----VEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
          PT+G +     +E      I   +WD  GQ+  R+   +YY N+  V+LV D T+RE
Sbjct: 33 PTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRE 89

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 5/77 (6%)

Query: 21  KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNH--EDL 78
           K +   +WD  GQ+  R   S+YY     +I+V D TD+E  +  K+ L ++  +  E++
Sbjct: 49  KTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENV 108

Query: 79  SKAAVLIYANKQDIKNS 95
           +K   L+  NK D+ + 
Sbjct: 109 NK---LLVGNKCDLTDK 122

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 36.2 bits (84), Expect = 0.001
 Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 12/93 (12%)

Query: 9   PTIGSN--VEEVIWKN----IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERI 62
           PTIG +  V++V  +N    ++F  +DL G        + +Y +T+ V+LV D TDR+  
Sbjct: 31  PTIGIDYGVKKVSVRNKEVRVNF--FDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSF 88

Query: 63  ----SLTKEELYKMLNHEDLSKAAVLIYANKQD 91
               S  KE   +   H ++    V++ ANK D
Sbjct: 89  EALDSWLKEMKQEGGPHGNMENIVVVVCANKID 121

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 36.5 bits (84), Expect = 0.002
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 21  KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK 80
           K I   +WD  GQ+S R+   +YY      +LV D T RE  +     L     H + + 
Sbjct: 53  KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-AN 111

Query: 81  AAVLIYANKQDI 92
             +++  NK D+
Sbjct: 112 MTIMLIGNKCDL 123

Length = 210

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 36.0 bits (83), Expect = 0.002
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 2/96 (2%)

Query: 1   MNEVVHT-SPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR 59
           M +  HT     G+ + EV  + I   +WD  GQ+  RA   +YY      ++V D T R
Sbjct: 28  MADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR 87

Query: 60  ERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNS 95
              +     L    N  + +    LI  NK D++  
Sbjct: 88  STYNHLSSWLTDARNLTNPNTVIFLI-GNKADLEAQ 122

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 35.9 bits (83), Expect = 0.002
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 7  TSPTIG----SNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
          ++ TIG    S V  V  K++   +WD  GQ+  R+   +YY      +LV D T RE
Sbjct: 29 SNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRE 86

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 35.4 bits (81), Expect = 0.003
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 18/96 (18%)

Query: 9   PTIGSNVEEVIWKN----IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISL 64
            T+G  V  +++      I F +WD  GQ+        YY   +  I++ D T R    +
Sbjct: 26  ATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR----V 81

Query: 65  TKEELYKMLN--HEDLSKAA----VLIYANKQDIKN 94
           T    YK +   H DL +      +++  NK D+K+
Sbjct: 82  T----YKNVPNWHRDLVRVCENIPIVLCGNKVDVKD 113

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	126
KOG0084|consensus	205		99.98
KOG0092|consensus	200		99.97
KOG0070|consensus	181		99.97
KOG0094|consensus	221		99.97
KOG0075|consensus	186		99.96
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.96
PLN00223	181	ADP-ribosylation factor; Provisional	99.96
KOG0078|consensus	207		99.96
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.96
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.96
KOG0087|consensus	222		99.96
KOG0071|consensus	180		99.96
KOG0098|consensus	216		99.95
PTZ00133	182	ADP-ribosylation factor; Provisional	99.95
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.95
KOG0079|consensus	198		99.95
PTZ00099	176	rab6; Provisional	99.95
KOG0093|consensus	193		99.94
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.94
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.94
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.94
KOG0394|consensus	210		99.94
KOG0080|consensus	209		99.94
KOG0086|consensus	214		99.94
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.94
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.94
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.94
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.94
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.94
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.94
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.94
KOG0073|consensus	185		99.94
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.94
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.93
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.93
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.93
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.93
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.93
KOG0081|consensus	219		99.92
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.92
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.92
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.92
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.92
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.92
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.92
KOG0083|consensus	192		99.92
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.92
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.92
KOG0091|consensus	213		99.92
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.92
KOG0095|consensus	213		99.91
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.91
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.91
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.91
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.91
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.91
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.91
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.91
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.91
KOG0097|consensus	215		99.91
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.91
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.91
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.91
PTZ00369	189	Ras-like protein; Provisional	99.91
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.91
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.9
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.9
KOG0395|consensus	196		99.9
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.9
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.9
KOG0072|consensus	182		99.9
KOG0088|consensus	218		99.9
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.9
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.89
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.89
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.89
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.89
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.89
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.89
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.89
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.89
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.89
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.89
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.89
PLN03110	216	Rab GTPase; Provisional	99.89
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.88
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.88
KOG0074|consensus	185		99.88
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.88
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.88
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.88
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.88
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.88
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.88
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.88
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.88
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.87
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.87
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.87
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.87
KOG0076|consensus	197		99.87
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.87
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.87
PLN03118	211	Rab family protein; Provisional	99.87
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.87
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.87
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.87
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.87
PLN03108	210	Rab family protein; Provisional	99.86
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.85
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.85
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.85
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.85
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.84
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.84
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.84
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.84
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.84
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.83
PLN00023	334	GTP-binding protein; Provisional	99.82
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.82
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.82
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.81
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.81
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.81
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.81
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.81
KOG0096|consensus	216		99.8
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.79
KOG0393|consensus	198		99.79
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.79
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.78
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.77
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.77
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.74
KOG4252|consensus	246		99.74
COG2229	187	Predicted GTPase [General function prediction only	99.73
KOG3883|consensus	198		99.71
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.7
KOG0077|consensus	193		99.7
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.7
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.69
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.68
PRK12299	335	obgE GTPase CgtA; Reviewed	99.67
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.67
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.66
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.66
COG1100	219	GTPase SAR1 and related small G proteins [General	99.65
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.62
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.62
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.61
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.61
KOG1673|consensus	205		99.6
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.6
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.6
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.6
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.6
PRK03003	472	GTP-binding protein Der; Reviewed	99.59
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.59
cd00881	189	GTP_translation_factor GTP translation factor fami	99.59
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.58
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.57
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.57
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.55
PRK15494	339	era GTPase Era; Provisional	99.55
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.55
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.54
PRK12317	425	elongation factor 1-alpha; Reviewed	99.54
PRK03003	472	GTP-binding protein Der; Reviewed	99.52
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.52
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.52
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.52
PRK10218	607	GTP-binding protein; Provisional	99.52
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.52
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.51
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.51
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.51
PRK05306	787	infB translation initiation factor IF-2; Validated	99.5
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.49
PRK05433	600	GTP-binding protein LepA; Provisional	99.49
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.48
PRK12296	500	obgE GTPase CgtA; Reviewed	99.48
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.47
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.46
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.46
KOG4423|consensus	229		99.46
PRK04213	201	GTP-binding protein; Provisional	99.46
PRK12297	424	obgE GTPase CgtA; Reviewed	99.45
CHL00189	742	infB translation initiation factor 2; Provisional	99.45
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.44
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.43
PRK11058	426	GTPase HflX; Provisional	99.42
PRK00093	435	GTP-binding protein Der; Reviewed	99.42
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.41
KOG0082|consensus	354		99.41
PRK00093	435	GTP-binding protein Der; Reviewed	99.4
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.39
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.39
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.39
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.38
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.38
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.37
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.36
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.36
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.36
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.34
PLN00043	447	elongation factor 1-alpha; Provisional	99.33
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.33
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	99.32
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.31
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.3
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.3
PRK04004	586	translation initiation factor IF-2; Validated	99.3
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.29
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.29
PRK12298	390	obgE GTPase CgtA; Reviewed	99.27
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.27
KOG0090|consensus	238		99.27
PRK00089	292	era GTPase Era; Reviewed	99.26
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.25
PRK13351	687	elongation factor G; Reviewed	99.25
PRK14845	1049	translation initiation factor IF-2; Provisional	99.24
KOG0462|consensus	650		99.24
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.23
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.23
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.23
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.23
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.22
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.22
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.22
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.22
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.21
PRK12736	394	elongation factor Tu; Reviewed	99.21
KOG1145|consensus	683		99.19
PRK12735	396	elongation factor Tu; Reviewed	99.19
COG0486	454	ThdF Predicted GTPase [General function prediction	99.19
PTZ00141	446	elongation factor 1- alpha; Provisional	99.17
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.17
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.15
PLN03126	478	Elongation factor Tu; Provisional	99.13
CHL00071	409	tufA elongation factor Tu	99.13
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.13
COG1160	444	Predicted GTPases [General function prediction onl	99.12
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.12
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.11
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.09
KOG1489|consensus	366		99.06
PRK00049	396	elongation factor Tu; Reviewed	99.05
KOG0099|consensus	379		99.03
PRK12739	691	elongation factor G; Reviewed	99.03
PRK12740	668	elongation factor G; Reviewed	99.03
COG1159	298	Era GTPase [General function prediction only]	99.03
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.02
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.02
COG1160	444	Predicted GTPases [General function prediction onl	99.0
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	98.98
PLN03127	447	Elongation factor Tu; Provisional	98.97
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	98.97
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	98.94
PRK09866	741	hypothetical protein; Provisional	98.9
KOG0085|consensus	359		98.88
PRK00007	693	elongation factor G; Reviewed	98.87
PRK13768	253	GTPase; Provisional	98.85
COG1084	346	Predicted GTPase [General function prediction only	98.83
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.8
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.79
KOG1707|consensus	625		98.78
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	98.77
COG2262	411	HflX GTPases [General function prediction only]	98.76
PRK12289	352	GTPase RsgA; Reviewed	98.7
KOG3886|consensus	295		98.68
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.66
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	98.66
PRK00098	298	GTPase RsgA; Reviewed	98.62
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.61
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	98.6
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	98.58
PTZ00416	836	elongation factor 2; Provisional	98.53
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	98.53
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	98.52
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.51
COG0536	369	Obg Predicted GTPase [General function prediction	98.48
KOG0458|consensus	603		98.46
PLN00116	843	translation elongation factor EF-2 subunit; Provis	98.46
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	98.46
PRK07560	731	elongation factor EF-2; Reviewed	98.45
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.4
PRK12288	347	GTPase RsgA; Reviewed	98.38
COG3276	447	SelB Selenocysteine-specific translation elongatio	98.37
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	98.35
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	98.35
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	98.3
COG0218	200	Predicted GTPase [General function prediction only	98.26
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.25
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	98.17
KOG1423|consensus	379		98.16
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.15
KOG0468|consensus	971		98.13
KOG1490|consensus	620		98.12
COG1163	365	DRG Predicted GTPase [General function prediction	98.1
KOG1191|consensus	531		98.1
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	98.04
KOG1144|consensus	1064		98.02
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.01
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	97.89
PRK09563	287	rbgA GTPase YlqF; Reviewed	97.87
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	97.86
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	97.85
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	97.84
PRK13796	365	GTPase YqeH; Provisional	97.83
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	97.77
PRK01889	356	GTPase RsgA; Reviewed	97.76
KOG1424|consensus	562		97.71
COG0050	394	TufB GTPases - translation elongation factors [Tra	97.7
PRK09435	332	membrane ATPase/protein kinase; Provisional	97.69
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	97.68
KOG0465|consensus	721		97.59
KOG0467|consensus	887		97.58
KOG0461|consensus	522		97.55
COG3596	296	Predicted GTPase [General function prediction only	97.51
COG5258	527	GTPBP1 GTPase [General function prediction only]	97.49
KOG3887|consensus	347		97.48
TIGR00101	199	ureG urease accessory protein UreG. This model rep	97.44
KOG0464|consensus	753		97.42
KOG1532|consensus	366		97.37
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	97.35
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	97.29
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	97.22
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.14
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	97.08
COG1162	301	Predicted GTPases [General function prediction onl	97.05
KOG0459|consensus	501		96.98
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	96.79
KOG1954|consensus	532		96.79
KOG0460|consensus	449		96.69
PRK09602	396	translation-associated GTPase; Reviewed	96.64
cd03110	179	Fer4_NifH_child This protein family's function is	96.54
KOG2484|consensus	435		96.41
KOG0705|consensus	749		96.4
COG1161	322	Predicted GTPases [General function prediction onl	96.37
KOG0448|consensus	749		96.29
KOG1707|consensus	625		96.29
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	96.26
KOG0463|consensus	641		95.96
KOG0466|consensus	466		95.89
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	95.59
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	95.42
KOG3905|consensus	473		95.42
KOG0410|consensus	410		95.14
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	95.12
KOG1143|consensus	591		95.09
KOG0447|consensus	980		95.05
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	95.0
KOG0469|consensus	842		94.81
COG4963	366	CpaE Flp pilus assembly protein, ATPase CpaE [Intr	94.54
cd03111	106	CpaE_like This protein family consists of proteins	94.5
cd03112	158	CobW_like The function of this protein family is u	94.38
PTZ00258	390	GTP-binding protein; Provisional	94.29
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	94.25
KOG1486|consensus	364		94.08
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	93.89
cd02036	179	MinD Bacterial cell division requires the formatio	93.85
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	93.69
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	93.49
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	93.1
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	92.96
PRK09601	364	GTP-binding protein YchF; Reviewed	92.87
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	92.79
COG5019	373	CDC3 Septin family protein [Cell division and chro	92.56
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	92.49
cd03114	148	ArgK-like The function of this protein family is u	92.45
TIGR00064	272	ftsY signal recognition particle-docking protein F	92.05
cd03115	173	SRP The signal recognition particle (SRP) mediates	92.02
KOG2423|consensus	572		91.77
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	91.55
TIGR03371	246	cellulose_yhjQ cellulose synthase operon protein Y	91.31
KOG0780|consensus	483		91.23
PHA02518	211	ParA-like protein; Provisional	90.84
COG1149	284	MinD superfamily P-loop ATPase containing an inser	90.78
TIGR01007	204	eps_fam capsular exopolysaccharide family. This mo	90.31
cd02037	169	MRP-like MRP (Multiple Resistance and pH adaptatio	89.26
PRK13185	270	chlL protochlorophyllide reductase iron-sulfur ATP	88.79
KOG0781|consensus	587		88.55
TIGR01969	251	minD_arch cell division ATPase MinD, archaeal. Thi	88.53
TIGR01968	261	minD_bact septum site-determining protein MinD. Th	88.11
CHL00175	281	minD septum-site determining protein; Validated	88.09
cd02032	267	Bchl_like This family of proteins contains bchL an	87.87
PRK14974	336	cell division protein FtsY; Provisional	87.82
PF14331	266	ImcF-related_N: ImcF-related N-terminal domain	87.39
COG0523	323	Putative GTPases (G3E family) [General function pr	87.12
TIGR00959	428	ffh signal recognition particle protein. This mode	86.38
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	86.1
PRK10416	318	signal recognition particle-docking protein FtsY;	85.91
cd02117	212	NifH_like This family contains the NifH (iron prot	85.43
PRK13849	231	putative crown gall tumor protein VirC1; Provision	85.23
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	84.95
PRK00771	437	signal recognition particle protein Srp54; Provisi	84.89
PRK09602	396	translation-associated GTPase; Reviewed	84.57
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	84.33
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	83.56
CHL00072	290	chlL photochlorophyllide reductase subunit L	83.32
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	82.59
PRK10818	270	cell division inhibitor MinD; Provisional	81.52
TIGR01281	268	DPOR_bchL light-independent protochlorophyllide re	80.94
PF01656	195	CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai	80.79
KOG4273|consensus	418		80.61
COG3523	1188	IcmF Type VI protein secretion system component Va	80.19

>KOG0084|consensus

Probab=99.98  E-value=9.8e-33  Score=168.94  Aligned_cols=119  Identities=22%  Similarity=0.261  Sum_probs=98.6

Q ss_pred             CCc-ccCCccCceE--EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566           3 EVV-HTSPTIGSNV--EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED   77 (126)
Q Consensus         3 ~~~-~~~pTi~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~   77 (126)
                      .|. .|..|||+.+  +++.+  +.+++++|||+|||+|+.+..+|+++|||+|+|||+++.+||..+..|+.++-+. .
T Consensus        33 ~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~-~  111 (205)
T KOG0084|consen   33 TFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRY-A  111 (205)
T ss_pred             CcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhh-c
Confidence            345 7899999665  55555  6689999999999999999999999999999999999999999999999888654 4


Q ss_pred             CCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceE-EEEeeeeeC
Q psy6566          78 LSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWH-IQSCCALTG  125 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~  125 (126)
                      ..++|+++||||+|+...   ..+....++.++...+++ ++++|||++
T Consensus       112 ~~~v~~lLVGNK~Dl~~~---~~v~~~~a~~fa~~~~~~~f~ETSAK~~  157 (205)
T KOG0084|consen  112 SENVPKLLVGNKCDLTEK---RVVSTEEAQEFADELGIPIFLETSAKDS  157 (205)
T ss_pred             cCCCCeEEEeeccccHhh---eecCHHHHHHHHHhcCCcceeecccCCc
Confidence            477899999999999764   333344445566667777 999999975

>KOG0092|consensus

Probab=99.97  E-value=9.6e-32  Score=164.05  Aligned_cols=121  Identities=24%  Similarity=0.350  Sum_probs=100.5

Q ss_pred             CCCccc-CCccCce--EEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566           2 NEVVHT-SPTIGSN--VEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE   76 (126)
Q Consensus         2 ~~~~~~-~pTi~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~   76 (126)
                      |+|..+ .||||..  .+++.+  ..++|.||||+|||+|..+.+.|+++|+++|+|||+++.+||..++.|++++.+.-
T Consensus        28 ~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~  107 (200)
T KOG0092|consen   28 DQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQA  107 (200)
T ss_pred             CccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhC
Confidence            677754 8999944  456666  45899999999999999999999999999999999999999999999999986654


Q ss_pred             CCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          77 DLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      . +++-+.++|||+||...   +++.......++...++.|+++|||+|.
T Consensus       108 ~-~~~vialvGNK~DL~~~---R~V~~~ea~~yAe~~gll~~ETSAKTg~  153 (200)
T KOG0092|consen  108 S-PNIVIALVGNKADLLER---REVEFEEAQAYAESQGLLFFETSAKTGE  153 (200)
T ss_pred             C-CCeEEEEecchhhhhhc---ccccHHHHHHHHHhcCCEEEEEeccccc
Confidence            4 88899999999999873   3333444455566778899999999973

>KOG0070|consensus

Probab=99.97  E-value=5.9e-30  Score=155.55  Aligned_cols=126  Identities=52%  Similarity=0.908  Sum_probs=120.0

Q ss_pred             CCCCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCC
Q psy6566           1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK   80 (126)
Q Consensus         1 ~~~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~   80 (126)
                      +||+.++.||+|++...+.++++.|.+||.+||+++++.|.+|+++++++|||+|.++++.+.+++..+..++......+
T Consensus        39 ~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~  118 (181)
T KOG0070|consen   39 LGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRN  118 (181)
T ss_pred             cCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCC
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999877789


Q ss_pred             CeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          81 AAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        81 ~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .|+++++||.|++++.+..++...+++.....+.+.+..|||.+|+
T Consensus       119 ~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~  164 (181)
T KOG0070|consen  119 APLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGE  164 (181)
T ss_pred             ceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccc
Confidence            9999999999999998889999999988888899999999999885

>KOG0094|consensus

Probab=99.97  E-value=1.5e-30  Score=159.24  Aligned_cols=118  Identities=19%  Similarity=0.336  Sum_probs=103.9

Q ss_pred             ccCCccCceE--EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNV--EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .|.+|||+.+  +++.+  ..+.+++|||+|||+|+.+.+.|++++.++|+|||+++.++|++..+|++.+...++..++
T Consensus        50 ~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~v  129 (221)
T KOG0094|consen   50 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDV  129 (221)
T ss_pred             cccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCce
Confidence            7999999665  66666  5578999999999999999999999999999999999999999999999999988876678


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      -+++||||.||.+.   +++....+...++..+..|.++||+.|.
T Consensus       130 iI~LVGnKtDL~dk---rqvs~eEg~~kAkel~a~f~etsak~g~  171 (221)
T KOG0094|consen  130 IIFLVGNKTDLSDK---RQVSIEEGERKAKELNAEFIETSAKAGE  171 (221)
T ss_pred             EEEEEcccccccch---hhhhHHHHHHHHHHhCcEEEEecccCCC
Confidence            99999999999875   5666666666667778899999999884

>KOG0075|consensus

Probab=99.96  E-value=7.9e-29  Score=145.54  Aligned_cols=124  Identities=25%  Similarity=0.511  Sum_probs=116.9

Q ss_pred             CCCc-ccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCC
Q psy6566           2 NEVV-HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK   80 (126)
Q Consensus         2 ~~~~-~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~   80 (126)
                      |++. ...||+|++.+.++-+.+.+.+||.+||.+|+.+|+.|++++++++||+|+.+++.+...+..+..++..+.+.+
T Consensus        43 g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~g  122 (186)
T KOG0075|consen   43 GQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTG  122 (186)
T ss_pred             ccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcC
Confidence            4566 566999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          81 AAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        81 ~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      +|++++|||.|++++.+..++.+.+++.....+++.+|.+|+++.
T Consensus       123 ip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~  167 (186)
T KOG0075|consen  123 IPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEK  167 (186)
T ss_pred             CcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCC
Confidence            999999999999998888889999999999999999999999864

>cd04149 Arf6 Arf6 subfamily

Probab=99.96  E-value=5.8e-28  Score=149.43  Aligned_cols=125  Identities=43%  Similarity=0.843  Sum_probs=106.9

Q ss_pred             CCCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         2 ~~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      +++..+.||+|+....+....+.+++|||+|+++++.+|+.+++.++++++|+|++++.+++++..++...++....+++
T Consensus        32 ~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~  111 (168)
T cd04149          32 GQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDA  111 (168)
T ss_pred             CCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCC
Confidence            46677899999888777778899999999999999999999999999999999999999999999999888776444679


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+.+....+++.+.+.......+.+.++++||++|+
T Consensus       112 piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~  156 (168)
T cd04149         112 LLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGD  156 (168)
T ss_pred             cEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCC
Confidence            999999999997655567777776655555566789999999984

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.96  E-value=5.1e-28  Score=151.28  Aligned_cols=125  Identities=48%  Similarity=0.881  Sum_probs=108.0

Q ss_pred             CCCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         2 ~~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      |++..+.||+|++...+..+++.+++||++|+++++.+|..++++++++++|+|+++++++.++..++..++.....+++
T Consensus        40 ~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~  119 (181)
T PLN00223         40 GEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA  119 (181)
T ss_pred             CCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCC
Confidence            56778899999988888889999999999999999999999999999999999999999999999888888766555689


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+.+....+++...++......+.+.+++|||++|+
T Consensus       120 piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~  164 (181)
T PLN00223        120 VLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGE  164 (181)
T ss_pred             CEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCC
Confidence            999999999998776667777776655445566778899999985

>KOG0078|consensus

Probab=99.96  E-value=1.7e-29  Score=156.52  Aligned_cols=119  Identities=19%  Similarity=0.288  Sum_probs=100.0

Q ss_pred             CCc-ccCCccCceE--EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566           3 EVV-HTSPTIGSNV--EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED   77 (126)
Q Consensus         3 ~~~-~~~pTi~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~   77 (126)
                      .|. .+..|+|+.+  +++.+  ..+.+++|||+||++|+.+...|+++|.++++|||+++..+|+++..|+..+-+. .
T Consensus        36 ~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~-a  114 (207)
T KOG0078|consen   36 SFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEH-A  114 (207)
T ss_pred             cCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhh-C
Confidence            345 7889999665  55666  5578999999999999999999999999999999999999999999987777554 4


Q ss_pred             CCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          78 LSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      ..++|+++||||+|+...   +++....++..+...++.++|+|||+|
T Consensus       115 ~~~v~~~LvGNK~D~~~~---R~V~~e~ge~lA~e~G~~F~EtSAk~~  159 (207)
T KOG0078|consen  115 SDDVVKILVGNKCDLEEK---RQVSKERGEALAREYGIKFFETSAKTN  159 (207)
T ss_pred             CCCCcEEEeecccccccc---ccccHHHHHHHHHHhCCeEEEccccCC
Confidence            468999999999999763   455555566666777899999999987

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.96  E-value=6.8e-28  Score=147.89  Aligned_cols=125  Identities=49%  Similarity=0.885  Sum_probs=105.9

Q ss_pred             CCCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         2 ~~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      |++..+.||+|+....+..+.+.+.+|||+|++++..+|..++++++++++|+|++++.++.++.+++..+++.....+.
T Consensus        23 ~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~  102 (159)
T cd04150          23 GEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDA  102 (159)
T ss_pred             CCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCC
Confidence            56777899999888878889999999999999999999999999999999999999999999999988888765444578


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+.+....+++...+.......+.+.++++||++|.
T Consensus       103 piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~  147 (159)
T cd04150         103 VLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGD  147 (159)
T ss_pred             CEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCC
Confidence            999999999997655555666666555555667788999999984

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.96  E-value=9.4e-28  Score=149.36  Aligned_cols=125  Identities=50%  Similarity=0.884  Sum_probs=108.5

Q ss_pred             CCCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         2 ~~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      |++..+.||+|+....+..+.+.+.+|||+|++.++.+|..++++++++++|+|++++++++++..++..+++....+++
T Consensus        36 ~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~  115 (175)
T smart00177       36 GESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDA  115 (175)
T ss_pred             CCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCC
Confidence            56677899999888888888999999999999999999999999999999999999999999999999888765444679


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+.+....+++.+.++......+.+.++++||++|+
T Consensus       116 piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~  160 (175)
T smart00177      116 VILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGD  160 (175)
T ss_pred             cEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCC
Confidence            999999999998766667777777766666677888899999884

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>KOG0087|consensus

Probab=99.96  E-value=3.4e-29  Score=154.91  Aligned_cols=120  Identities=25%  Similarity=0.332  Sum_probs=102.4

Q ss_pred             CCCc-ccCCccCceEEE--EEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566           2 NEVV-HTSPTIGSNVEE--VIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE   76 (126)
Q Consensus         2 ~~~~-~~~pTi~~~~~~--~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~   76 (126)
                      ++|. +..+|||+.+.+  +.+  +.++.+||||+|||+|+.....|+++|.|+++|||+++..+|+.+..|+.++... 
T Consensus        37 nEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdh-  115 (222)
T KOG0087|consen   37 NEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDH-  115 (222)
T ss_pred             cccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhc-
Confidence            5777 888999966654  555  6689999999999999999999999999999999999999999999999988655 


Q ss_pred             CCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          77 DLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      ..++++++++|||+||...   +.+....+..++...++.++++||+++
T Consensus       116 ad~nivimLvGNK~DL~~l---raV~te~~k~~Ae~~~l~f~EtSAl~~  161 (222)
T KOG0087|consen  116 ADSNIVIMLVGNKSDLNHL---RAVPTEDGKAFAEKEGLFFLETSALDA  161 (222)
T ss_pred             CCCCeEEEEeecchhhhhc---cccchhhhHhHHHhcCceEEEeccccc
Confidence            4479999999999999763   455566666777777889999999875

>KOG0071|consensus

Probab=99.96  E-value=2e-27  Score=138.70  Aligned_cols=126  Identities=44%  Similarity=0.853  Sum_probs=118.5

Q ss_pred             CCCCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCC
Q psy6566           1 MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK   80 (126)
Q Consensus         1 ~~~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~   80 (126)
                      +|......||+||+.+++.++++.|.+||.+|+++.++.|++|+.+..++|||+|+.+++..++++..+..+++.+...+
T Consensus        39 l~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~  118 (180)
T KOG0071|consen   39 LGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRD  118 (180)
T ss_pred             cCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhc
Confidence            46667889999999999999999999999999999999999999999999999999999999999999999999988889


Q ss_pred             CeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          81 AAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        81 ~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .|+++..||+|++....+.++...+.+..++.+.+-+..+||.+|+
T Consensus       119 ~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gd  164 (180)
T KOG0071|consen  119 AIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGD  164 (180)
T ss_pred             ceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccch
Confidence            9999999999999988889999999988888899999999998874

>KOG0098|consensus

Probab=99.95  E-value=8.9e-29  Score=150.46  Aligned_cols=117  Identities=26%  Similarity=0.334  Sum_probs=103.3

Q ss_pred             ccCCccCce--EEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSN--VEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      -+..|+|+.  .+.+++  +.+++++|||+|||.|+.....|++.|.|+++|||++++++|..+..|+..+.+.. .++.
T Consensus        34 ~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~-~~Nm  112 (216)
T KOG0098|consen   34 VHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHS-NENM  112 (216)
T ss_pred             cccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhc-CCCc
Confidence            456899944  567777  67999999999999999999999999999999999999999999999999886653 4789


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .+++++||+||...   ++|..++++.++++.++.++++||++++
T Consensus       113 vImLiGNKsDL~~r---R~Vs~EEGeaFA~ehgLifmETSakt~~  154 (216)
T KOG0098|consen  113 VIMLIGNKSDLEAR---REVSKEEGEAFAREHGLIFMETSAKTAE  154 (216)
T ss_pred             EEEEEcchhhhhcc---ccccHHHHHHHHHHcCceeehhhhhhhh
Confidence            99999999999764   5778888888998999999999999874

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.95  E-value=7.1e-27  Score=146.23  Aligned_cols=125  Identities=51%  Similarity=0.899  Sum_probs=107.5

Q ss_pred             CCCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         2 ~~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      |++..+.||+|.+...+.++++.+.+|||+|+++++.+|..++++++++++|+|+++++++.....++..+++.....+.
T Consensus        40 ~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~  119 (182)
T PTZ00133         40 GEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDA  119 (182)
T ss_pred             CCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCC
Confidence            56777889999888888889999999999999999999999999999999999999999999999888888765444678


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+......+++...++....+.+.+.++++||++|+
T Consensus       120 piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~  164 (182)
T PTZ00133        120 VLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQ  164 (182)
T ss_pred             CEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCC
Confidence            999999999997765666777777766566667788899999884

>cd04120 Rab12 Rab12 subfamily

Probab=99.95  E-value=1.4e-27  Score=151.41  Aligned_cols=121  Identities=21%  Similarity=0.294  Sum_probs=92.2

Q ss_pred             CCCc-ccCCccCce--EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566           2 NEVV-HTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE   76 (126)
Q Consensus         2 ~~~~-~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~   76 (126)
                      |.|. +|.||+|..  .+.+.+++  +.+++|||+|+++|+.++..|+++++++++|||++++++|+.+..|+..+ +..
T Consensus        23 ~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i-~~~  101 (202)
T cd04120          23 DTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMI-DKY  101 (202)
T ss_pred             CCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHH-HHh
Confidence            4565 678999844  45677754  88999999999999999999999999999999999999999999887655 333


Q ss_pred             CCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccC-CceEEEEeeeeeCC
Q psy6566          77 DLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKK-QQWHIQSCCALTGE  126 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~  126 (126)
                      ...++|+++++||+|+....   ++.......+++. .++.+++|||++|.
T Consensus       102 ~~~~~piilVgNK~DL~~~~---~v~~~~~~~~a~~~~~~~~~etSAktg~  149 (202)
T cd04120         102 ASEDAELLLVGNKLDCETDR---EISRQQGEKFAQQITGMRFCEASAKDNF  149 (202)
T ss_pred             CCCCCcEEEEEECccccccc---ccCHHHHHHHHHhcCCCEEEEecCCCCC
Confidence            34679999999999996431   1222222222222 25689999999984

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0079|consensus

Probab=99.95  E-value=2.2e-28  Score=143.98  Aligned_cols=118  Identities=23%  Similarity=0.256  Sum_probs=99.7

Q ss_pred             CCc-ccCCccCce--EEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566           3 EVV-HTSPTIGSN--VEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED   77 (126)
Q Consensus         3 ~~~-~~~pTi~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~   77 (126)
                      .|. .|..|+|+.  .+++.+  +.++++||||+|+|+|+.+...|+++.+++++|||.++.+||.+.++|++++-++. 
T Consensus        32 tFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~nc-  110 (198)
T KOG0079|consen   32 TFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNC-  110 (198)
T ss_pred             ccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcC-
Confidence            455 899999955  466666  66899999999999999999999999999999999999999999999999997665 


Q ss_pred             CCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          78 LSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                       +..|-++||||.|.++-   ..+....+..++...++++|++|||++
T Consensus       111 -dsv~~vLVGNK~d~~~R---rvV~t~dAr~~A~~mgie~FETSaKe~  154 (198)
T KOG0079|consen  111 -DSVPKVLVGNKNDDPER---RVVDTEDARAFALQMGIELFETSAKEN  154 (198)
T ss_pred             -ccccceecccCCCCccc---eeeehHHHHHHHHhcCchheehhhhhc
Confidence             58899999999998762   233344445666778899999999976

>PTZ00099 rab6; Provisional

Probab=99.95  E-value=1.7e-27  Score=148.23  Aligned_cols=119  Identities=19%  Similarity=0.324  Sum_probs=93.6

Q ss_pred             CCCc-ccCCccCceEE--EEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566           2 NEVV-HTSPTIGSNVE--EVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE   76 (126)
Q Consensus         2 ~~~~-~~~pTi~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~   76 (126)
                      |.|. +|.||+|....  .+.+  +.+.+.||||+|++++..++..++++|+++++|||++++++|+.+..|+..+.+..
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            5676 78999996654  4555  45889999999999999999999999999999999999999999999888887653


Q ss_pred             CCCCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          77 DLSKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      . +++|+++|+||+|+...  ...++.     .......+..+++|||++|+
T Consensus        83 ~-~~~piilVgNK~DL~~~~~v~~~e~-----~~~~~~~~~~~~e~SAk~g~  128 (176)
T PTZ00099         83 G-KDVIIALVGNKTDLGDLRKVTYEEG-----MQKAQEYNTMFHETSAKAGH  128 (176)
T ss_pred             C-CCCeEEEEEECcccccccCCCHHHH-----HHHHHHcCCEEEEEECCCCC
Confidence            2 57899999999999642  222222     12223345678999999884

>KOG0093|consensus

Probab=99.94  E-value=1.1e-27  Score=140.88  Aligned_cols=116  Identities=21%  Similarity=0.286  Sum_probs=96.3

Q ss_pred             ccCCccCceEEEEEE----CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNVEEVIW----KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      -+..|+|+.++.-.+    +.+++++|||+|+|+++.+--.|++++.++++|+|+++.++|..+..|.-++ +...+.++
T Consensus        49 afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqI-ktysw~na  127 (193)
T KOG0093|consen   49 AFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQI-KTYSWDNA  127 (193)
T ss_pred             ceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHh-eeeeccCc
Confidence            567899977766565    7799999999999999999999999999999999999999999999987766 44466899


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      |++++|||||+..+   +.+..+.++..+.+.++.+||+|||.+
T Consensus       128 qvilvgnKCDmd~e---Rvis~e~g~~l~~~LGfefFEtSaK~N  168 (193)
T KOG0093|consen  128 QVILVGNKCDMDSE---RVISHERGRQLADQLGFEFFETSAKEN  168 (193)
T ss_pred             eEEEEecccCCccc---eeeeHHHHHHHHHHhChHHhhhccccc
Confidence            99999999999875   333344444555666778999999976

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.94  E-value=1.8e-25  Score=138.13  Aligned_cols=120  Identities=32%  Similarity=0.613  Sum_probs=102.9

Q ss_pred             ccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEE
Q psy6566           6 HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLI   85 (126)
Q Consensus         6 ~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piil   85 (126)
                      ++.||+|+....+.+++..+++||++|++.++.+|..+++.++++++|+|++++.++.++..|+..+++.....++|+++
T Consensus        26 ~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~pili  105 (167)
T cd04161          26 KVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILV  105 (167)
T ss_pred             cccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEE
Confidence            78999999888888899999999999999999999999999999999999999999999999999887765556899999


Q ss_pred             EEecCCCCCCCCHHHHHhhcCcCcc-c--CCceEEEEeeeeeC
Q psy6566          86 YANKQDIKNSMSPVEISNLLDLTSI-K--KQQWHIQSCCALTG  125 (126)
Q Consensus        86 v~nK~D~~~~~~~~~v~~~~~~~~~-~--~~~~~~~~~Sa~~~  125 (126)
                      ++||+|+.+..+..++.+.+..... +  ...+.+++|||++|
T Consensus       106 v~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g  148 (167)
T cd04161         106 LANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEG  148 (167)
T ss_pred             EEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeC
Confidence            9999999887666666666554432 2  23578899999987

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.94  E-value=3.3e-26  Score=142.38  Aligned_cols=125  Identities=46%  Similarity=0.810  Sum_probs=113.3

Q ss_pred             CCCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         2 ~~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      +++..+.||+|++...+.+++..+.+||.+|+..++..|+.|++++++++||+|+++++.+.+++..+..++......+.
T Consensus        37 ~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~  116 (175)
T PF00025_consen   37 GEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDI  116 (175)
T ss_dssp             SSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTS
T ss_pred             ccccccCcccccccceeeeCcEEEEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccc
Confidence            34557899999999999999999999999999999999999999999999999999999999999999999988766789


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhhcCcCccc-CCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNLLDLTSIK-KQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+++.....++...+...... .+.+.++.|||++|+
T Consensus       117 piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~  162 (175)
T PF00025_consen  117 PILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGE  162 (175)
T ss_dssp             EEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTB
T ss_pred             eEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCc
Confidence            999999999999887888888887766664 788999999999884

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04121 Rab40 Rab40 subfamily

Probab=99.94  E-value=8.6e-27  Score=146.48  Aligned_cols=119  Identities=13%  Similarity=0.212  Sum_probs=92.9

Q ss_pred             CCc-ccCCccCceE--EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566           3 EVV-HTSPTIGSNV--EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED   77 (126)
Q Consensus         3 ~~~-~~~pTi~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~   77 (126)
                      ++. ++.||++...  ..+.+++  +.+++|||+|++++..+++.++++++++++|||++++.+|+++..|+..+.+.. 
T Consensus        30 ~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~-  108 (189)
T cd04121          30 STESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-  108 (189)
T ss_pred             CCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-
Confidence            444 6678888544  4555544  789999999999999999999999999999999999999999999888885543 


Q ss_pred             CCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          78 LSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                       ++.|++++|||+|+....   .+.....+.+++..++++++|||++|.
T Consensus       109 -~~~piilVGNK~DL~~~~---~v~~~~~~~~a~~~~~~~~e~SAk~g~  153 (189)
T cd04121         109 -PGVPKILVGNRLHLAFKR---QVATEQAQAYAERNGMTFFEVSPLCNF  153 (189)
T ss_pred             -CCCCEEEEEECccchhcc---CCCHHHHHHHHHHcCCEEEEecCCCCC
Confidence             689999999999996531   111222233344567789999999884

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0394|consensus

Probab=99.94  E-value=2.7e-27  Score=143.73  Aligned_cols=119  Identities=19%  Similarity=0.249  Sum_probs=96.7

Q ss_pred             ccCCccC--ceEEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC---C
Q psy6566           6 HTSPTIG--SNVEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED---L   78 (126)
Q Consensus         6 ~~~pTi~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~---~   78 (126)
                      +|..|||  +-.+.+.+  ..+.++||||+|||+|+++.-.++++||.++++||++++++|+.+..|..+++....   .
T Consensus        37 qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~P  116 (210)
T KOG0394|consen   37 QYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDP  116 (210)
T ss_pred             HhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCC
Confidence            8899999  44577777  447899999999999999999999999999999999999999999999999987633   2


Q ss_pred             CCCeEEEEEecCCCCCCCCHHHHHhhcCcCcc-cCCceEEEEeeeeeC
Q psy6566          79 SKAAVLIYANKQDIKNSMSPVEISNLLDLTSI-KKQQWHIQSCCALTG  125 (126)
Q Consensus        79 ~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~Sa~~~  125 (126)
                      ...|++++|||+|+.+..+ ..+....++.+. ..++++|||+|||.+
T Consensus       117 e~FPFVilGNKiD~~~~~~-r~VS~~~Aq~WC~s~gnipyfEtSAK~~  163 (210)
T KOG0394|consen  117 ETFPFVILGNKIDVDGGKS-RQVSEKKAQTWCKSKGNIPYFETSAKEA  163 (210)
T ss_pred             CcccEEEEcccccCCCCcc-ceeeHHHHHHHHHhcCCceeEEeccccc
Confidence            3679999999999976321 333343344444 456899999999975

>KOG0080|consensus

Probab=99.94  E-value=1.7e-27  Score=141.97  Aligned_cols=119  Identities=24%  Similarity=0.316  Sum_probs=99.6

Q ss_pred             CcccCCc-cCce--EEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566           4 VVHTSPT-IGSN--VEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL   78 (126)
Q Consensus         4 ~~~~~pT-i~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~   78 (126)
                      |.+..|| ||+.  .+.+++  +..++.||||+|||+|+.+-++|+++|.++|+|||++.+++|..+..|++++-.....
T Consensus        36 fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn  115 (209)
T KOG0080|consen   36 FDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTN  115 (209)
T ss_pred             cCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCC
Confidence            4445555 9955  466666  5578999999999999999999999999999999999999999998888887665555


Q ss_pred             CCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          79 SKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        79 ~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      +++-.++|+||+|..++   +.+...++..+++....-|++||||+.
T Consensus       116 ~diikmlVgNKiDkes~---R~V~reEG~kfAr~h~~LFiE~SAkt~  159 (209)
T KOG0080|consen  116 PDIIKMLVGNKIDKESE---RVVDREEGLKFARKHRCLFIECSAKTR  159 (209)
T ss_pred             ccHhHhhhcccccchhc---ccccHHHHHHHHHhhCcEEEEcchhhh
Confidence            78889999999996542   567777788888888889999999975

>KOG0086|consensus

Probab=99.94  E-value=1.2e-26  Score=137.45  Aligned_cols=117  Identities=26%  Similarity=0.354  Sum_probs=98.4

Q ss_pred             ccCCccCc--eEEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGS--NVEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~--~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      +...|||+  ..+.+.+  +.++++||||+|||+|+...+.|+++|.+.++|+|++++++|+.+..|+...- .-..+++
T Consensus        37 dssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR-~lAs~nI  115 (214)
T KOG0086|consen   37 DSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDAR-TLASPNI  115 (214)
T ss_pred             cccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHH-hhCCCcE
Confidence            44578884  4566777  66899999999999999999999999999999999999999999999987763 3345899


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      -+++++||.||.++   +++.-.....+++.+++.+.++||++|+
T Consensus       116 vviL~GnKkDL~~~---R~VtflEAs~FaqEnel~flETSa~TGe  157 (214)
T KOG0086|consen  116 VVILCGNKKDLDPE---REVTFLEASRFAQENELMFLETSALTGE  157 (214)
T ss_pred             EEEEeCChhhcChh---hhhhHHHHHhhhcccceeeeeecccccc
Confidence            99999999999875   4555555566677888899999999985

>cd04151 Arl1 Arl1 subfamily

Probab=99.94  E-value=3.1e-25  Score=135.80  Aligned_cols=125  Identities=50%  Similarity=0.850  Sum_probs=101.9

Q ss_pred             CCCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         2 ~~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      +++..+.||++++...+.++++.+++|||||++.+..+|+.+++.++++++|+|++++.++.....++..+++.....+.
T Consensus        22 ~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (158)
T cd04151          22 GEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGA  101 (158)
T ss_pred             CCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCC
Confidence            34556789999888888888999999999999999999999999999999999999988888777777776665444679


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+.+.....++...+........+++++++||++|.
T Consensus       102 piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~  146 (158)
T cd04151         102 VLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGE  146 (158)
T ss_pred             cEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCC
Confidence            999999999997654455666655544444556789999999874

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.94  E-value=7.1e-27  Score=146.13  Aligned_cols=123  Identities=17%  Similarity=0.251  Sum_probs=93.3

Q ss_pred             CCCc-ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHH-HHHHHHHhCCC
Q psy6566           2 NEVV-HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT-KEELYKMLNHE   76 (126)
Q Consensus         2 ~~~~-~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~-~~~~~~~~~~~   76 (126)
                      |.|. +|.||++... ..+.+  +.+.+++|||+|+++|..+++.++++++++++|||++++.+|+.+ ..|+..+.+..
T Consensus        28 ~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~  107 (182)
T cd04172          28 DCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC  107 (182)
T ss_pred             CCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC
Confidence            4555 7899999443 45555  457899999999999999999999999999999999999999998 67766664432


Q ss_pred             CCCCCeEEEEEecCCCCCCCC---------HHHHHhhcCcCcccCCce-EEEEeeeeeCC
Q psy6566          77 DLSKAAVLIYANKQDIKNSMS---------PVEISNLLDLTSIKKQQW-HIQSCCALTGE  126 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~~~---------~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~  126 (126)
                        ++.|+++|+||+|+.....         ...+....+..+++..++ +|++|||++|+
T Consensus       108 --~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~  165 (182)
T cd04172         108 --PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSE  165 (182)
T ss_pred             --CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCC
Confidence              5799999999999864210         011233334445555664 89999999984

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04158 ARD1 ARD1 subfamily

Probab=99.94  E-value=3.2e-25  Score=137.23  Aligned_cols=124  Identities=44%  Similarity=0.790  Sum_probs=101.7

Q ss_pred             CCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           3 EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         3 ~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      ++..+.||+|+....+..+++.+.+|||||++.++..|..+++.++++++|+|.++++++.++..|+..+++.....+.|
T Consensus        23 ~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~p  102 (169)
T cd04158          23 EFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDAL  102 (169)
T ss_pred             CCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCC
Confidence            45678999998888888899999999999999999999999999999999999999999999999999888765446789


Q ss_pred             EEEEEecCCCCCCCCHHHHHhhcCcCcc-cCCceEEEEeeeeeCC
Q psy6566          83 VLIYANKQDIKNSMSPVEISNLLDLTSI-KKQQWHIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~Sa~~~~  126 (126)
                      +++++||+|+......+++.+....... ..+.+.+++|||++|.
T Consensus       103 iilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  147 (169)
T cd04158         103 LLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGM  147 (169)
T ss_pred             EEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCC
Confidence            9999999999765555555554432211 2334678999999874

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04154 Arl2 Arl2 subfamily

Probab=99.94  E-value=2.7e-25  Score=137.95  Aligned_cols=123  Identities=40%  Similarity=0.741  Sum_probs=102.9

Q ss_pred             CcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE
Q psy6566           4 VVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV   83 (126)
Q Consensus         4 ~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi   83 (126)
                      +..+.||+|+....+.+++..+.+|||||++.++.++..+++.++++++|+|++++.++.+...|+..+++.....++|+
T Consensus        39 ~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~  118 (173)
T cd04154          39 IDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATL  118 (173)
T ss_pred             CCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCE
Confidence            44788999988888888999999999999999999999999999999999999999999999888888776544468999


Q ss_pred             EEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          84 LIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        84 ilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ++++||+|+.+....+++...+.....+...++++++||++|+
T Consensus       119 iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  161 (173)
T cd04154         119 LILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGE  161 (173)
T ss_pred             EEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCc
Confidence            9999999997755555665555444344567899999999884

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.94  E-value=3.9e-25  Score=137.45  Aligned_cols=125  Identities=73%  Similarity=1.194  Sum_probs=105.9

Q ss_pred             CCCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         2 ~~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      |++..+.||+|.+...+.++++.+.+|||||++.+...|..++++++++++|+|+++++++.....++..+++.....++
T Consensus        38 ~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~  117 (174)
T cd04153          38 GEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKA  117 (174)
T ss_pred             CCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCC
Confidence            45667889999888888889999999999999999999999999999999999999999999888888888776555679


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+.+....+++.+.++....+..+++++++||++|+
T Consensus       118 p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~  162 (174)
T cd04153         118 VLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGE  162 (174)
T ss_pred             CEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCC
Confidence            999999999997755566666666655445567889999999874

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04133 Rop_like Rop subfamily

Probab=99.94  E-value=1.1e-26  Score=144.56  Aligned_cols=123  Identities=15%  Similarity=0.236  Sum_probs=93.0

Q ss_pred             CCCc-ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHH-HHHHHHHhCCC
Q psy6566           2 NEVV-HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT-KEELYKMLNHE   76 (126)
Q Consensus         2 ~~~~-~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~-~~~~~~~~~~~   76 (126)
                      |+|. +|.||++... ..+.+  +.+.+.+|||+|+++++.++..++++++++++|||++++++|+.+ ..|+..+.+..
T Consensus        24 ~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~  103 (176)
T cd04133          24 NKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA  103 (176)
T ss_pred             CCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC
Confidence            5676 7999998443 44555  447899999999999999999999999999999999999999998 57777765433


Q ss_pred             CCCCCeEEEEEecCCCCCCCC-------HHHHHhhcCcCcccCCce-EEEEeeeeeCC
Q psy6566          77 DLSKAAVLIYANKQDIKNSMS-------PVEISNLLDLTSIKKQQW-HIQSCCALTGE  126 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~~~-------~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~  126 (126)
                        +++|+++||||+|+.+...       ...+....+..+++..+. .+++|||++|.
T Consensus       104 --~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~  159 (176)
T cd04133         104 --PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ  159 (176)
T ss_pred             --CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence              5799999999999965311       011222233334444555 69999999884

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.94  E-value=6.6e-25  Score=135.26  Aligned_cols=118  Identities=29%  Similarity=0.493  Sum_probs=99.3

Q ss_pred             cccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEE
Q psy6566           5 VHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVL   84 (126)
Q Consensus         5 ~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii   84 (126)
                      ..+.||+|+....+..+++.+.+|||+|+++++.+|..++++++++++|+|.+++.++...+.|+..+.+..  +++|++
T Consensus        26 ~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~--~~~pii  103 (164)
T cd04162          26 ESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP--PDLPLV  103 (164)
T ss_pred             ccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC--CCCcEE
Confidence            378899998776677788999999999999999999999999999999999999999999998888886543  689999


Q ss_pred             EEEecCCCCCCCCHHHHHhhcC-cCcccCCceEEEEeeeee
Q psy6566          85 IYANKQDIKNSMSPVEISNLLD-LTSIKKQQWHIQSCCALT  124 (126)
Q Consensus        85 lv~nK~D~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~Sa~~  124 (126)
                      +++||+|+.......++...+. ...++..++.++++||++
T Consensus       104 lv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~  144 (164)
T cd04162         104 VLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDD  144 (164)
T ss_pred             EEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecC
Confidence            9999999987655555555543 334466789999999997

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>KOG0073|consensus

Probab=99.94  E-value=2.6e-25  Score=132.75  Aligned_cols=121  Identities=40%  Similarity=0.744  Sum_probs=111.5

Q ss_pred             ccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEE
Q psy6566           6 HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLI   85 (126)
Q Consensus         6 ~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piil   85 (126)
                      ..+||.|++.+++.+++..+.+||.+||..++..|+.||+.+|++|+|+|.+++..+++....+..++......+.|+++
T Consensus        43 ~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lv  122 (185)
T KOG0073|consen   43 TISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLV  122 (185)
T ss_pred             ccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEE
Confidence            67899999999999999999999999999999999999999999999999999999999999999998877778899999


Q ss_pred             EEecCCCCCCCCHHHHHhhcCcCcc-cCCceEEEEeeeeeCC
Q psy6566          86 YANKQDIKNSMSPVEISNLLDLTSI-KKQQWHIQSCCALTGE  126 (126)
Q Consensus        86 v~nK~D~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~Sa~~~~  126 (126)
                      ++||+|+.+..+.+++......... +...++++.|||.+|+
T Consensus       123 lank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge  164 (185)
T KOG0073|consen  123 LANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGE  164 (185)
T ss_pred             EEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccc
Confidence            9999999988888888877776655 7889999999999984

>cd01875 RhoG RhoG subfamily

Probab=99.94  E-value=2.5e-26  Score=144.74  Aligned_cols=123  Identities=16%  Similarity=0.273  Sum_probs=90.3

Q ss_pred             CCCc-ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHH-HHHHHhCCC
Q psy6566           2 NEVV-HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKE-ELYKMLNHE   76 (126)
Q Consensus         2 ~~~~-~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~-~~~~~~~~~   76 (126)
                      |.|. +|.||+|... ..+.+  +.+.+++|||+|+++|+.+++.++++++++++|||++++++|+.+.. |...+.+. 
T Consensus        26 ~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~-  104 (191)
T cd01875          26 NAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHH-  104 (191)
T ss_pred             CCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-
Confidence            5664 8899999543 34555  44789999999999999999999999999999999999999999975 55545432 


Q ss_pred             CCCCCeEEEEEecCCCCCCCCH-HHH--------HhhcCcCcccCCc-eEEEEeeeeeCC
Q psy6566          77 DLSKAAVLIYANKQDIKNSMSP-VEI--------SNLLDLTSIKKQQ-WHIQSCCALTGE  126 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~~~~-~~v--------~~~~~~~~~~~~~-~~~~~~Sa~~~~  126 (126)
                       .+++|+++++||+|+.+.... +.+        ....+..+++..+ +++++|||++|+
T Consensus       105 -~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~  163 (191)
T cd01875         105 -CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQD  163 (191)
T ss_pred             -CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence             257999999999999653211 111        1111222333344 689999999874

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04131 Rnd Rnd subfamily

Probab=99.93  E-value=3.3e-26  Score=142.74  Aligned_cols=123  Identities=19%  Similarity=0.253  Sum_probs=92.6

Q ss_pred             CCCc-ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHH-HHHHHHHhCCC
Q psy6566           2 NEVV-HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT-KEELYKMLNHE   76 (126)
Q Consensus         2 ~~~~-~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~-~~~~~~~~~~~   76 (126)
                      |.|. +|.||++... ..+.+  +.+.+++|||+|++.+..+++.++++++++++|||++++++|+++ ..|+..+.+..
T Consensus        24 ~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~  103 (178)
T cd04131          24 DCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFC  103 (178)
T ss_pred             CcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHC
Confidence            3455 7899998443 45556  457899999999999999999999999999999999999999996 67766665432


Q ss_pred             CCCCCeEEEEEecCCCCCCCC---------HHHHHhhcCcCcccCCce-EEEEeeeeeCC
Q psy6566          77 DLSKAAVLIYANKQDIKNSMS---------PVEISNLLDLTSIKKQQW-HIQSCCALTGE  126 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~~~---------~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~  126 (126)
                        ++.|+++|+||+|+.+...         ...+....+..+++..++ +|++|||++|+
T Consensus       104 --~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~  161 (178)
T cd04131         104 --PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSE  161 (178)
T ss_pred             --CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCC
Confidence              5789999999999864210         011223334445555665 79999999874

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.93  E-value=6.8e-26  Score=146.04  Aligned_cols=123  Identities=19%  Similarity=0.272  Sum_probs=93.0

Q ss_pred             CCCc-ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHH-HHHHHHHhCCC
Q psy6566           2 NEVV-HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT-KEELYKMLNHE   76 (126)
Q Consensus         2 ~~~~-~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~-~~~~~~~~~~~   76 (126)
                      |.|. +|.||++... ..+.+  +.+.+.+|||+|++.|..+++.++++|+++++|||++++++|+.+ ..|+..+.+..
T Consensus        36 ~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~  115 (232)
T cd04174          36 DCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC  115 (232)
T ss_pred             CCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC
Confidence            3455 7899998444 34555  457899999999999999999999999999999999999999985 66766665432


Q ss_pred             CCCCCeEEEEEecCCCCCCCC---------HHHHHhhcCcCcccCCce-EEEEeeeeeCC
Q psy6566          77 DLSKAAVLIYANKQDIKNSMS---------PVEISNLLDLTSIKKQQW-HIQSCCALTGE  126 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~~~---------~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~  126 (126)
                        ++.|+++|+||+|+.....         ...+....+..+++..++ .|++|||++|+
T Consensus       116 --~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~  173 (232)
T cd04174         116 --PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSE  173 (232)
T ss_pred             --CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCC
Confidence              5789999999999864210         012333334455556676 69999999873

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04126 Rab20 Rab20 subfamily

Probab=99.93  E-value=1.4e-25  Score=143.75  Aligned_cols=92  Identities=17%  Similarity=0.327  Sum_probs=80.8

Q ss_pred             CCCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         2 ~~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      ++|.++.||+|.......++...+.+|||+|++.+..++..+++.++++++|||++++++|+.+..||..+.+.. ..++
T Consensus        23 ~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~-~~~~  101 (220)
T cd04126          23 RRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTA-NEDC  101 (220)
T ss_pred             CCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCC
Confidence            456678999997776666778899999999999999999999999999999999999999999999888876542 3578


Q ss_pred             eEEEEEecCCCCC
Q psy6566          82 AVLIYANKQDIKN   94 (126)
Q Consensus        82 piilv~nK~D~~~   94 (126)
                      |+++|+||+|+.+
T Consensus       102 piIlVgNK~DL~~  114 (220)
T cd04126         102 LFAVVGNKLDLTE  114 (220)
T ss_pred             cEEEEEECccccc
Confidence            9999999999865

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.93  E-value=4.7e-25  Score=139.63  Aligned_cols=117  Identities=21%  Similarity=0.312  Sum_probs=93.0

Q ss_pred             CCCc-ccCCccCceEEEEE--E--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566           2 NEVV-HTSPTIGSNVEEVI--W--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE   76 (126)
Q Consensus         2 ~~~~-~~~pTi~~~~~~~~--~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~   76 (126)
                      |.|. .|.||+|+......  +  +.+.+.+|||+|+++|..++..++++++++++|||++++.++..+..|+..+.+..
T Consensus        18 ~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~   97 (200)
T smart00176       18 GEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC   97 (200)
T ss_pred             CCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhC
Confidence            4565 68999996665444  3  45899999999999999999999999999999999999999999999888776643


Q ss_pred             CCCCCeEEEEEecCCCCCC-CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          77 DLSKAAVLIYANKQDIKNS-MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                        +++|+++|+||+|+... ...+..      .+.+..++.+++|||++|+
T Consensus        98 --~~~piilvgNK~Dl~~~~v~~~~~------~~~~~~~~~~~e~SAk~~~  140 (200)
T smart00176       98 --ENIPIVLCGNKVDVKDRKVKAKSI------TFHRKKNLQYYDISAKSNY  140 (200)
T ss_pred             --CCCCEEEEEECcccccccCCHHHH------HHHHHcCCEEEEEeCCCCC
Confidence              57999999999998542 111111      2234457789999999874

Ran is involved in the active transport of proteins through nuclear pores.

>cd04157 Arl6 Arl6 subfamily

Probab=99.93  E-value=5.8e-24  Score=130.33  Aligned_cols=121  Identities=42%  Similarity=0.722  Sum_probs=97.6

Q ss_pred             ccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC--CCCCeE
Q psy6566           6 HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED--LSKAAV   83 (126)
Q Consensus         6 ~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~pi   83 (126)
                      .+.||+|+....+..++..+.+|||||++++..+|..+++.++++++|+|++++.++..+..|+..+++...  ..++|+
T Consensus        28 ~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  107 (162)
T cd04157          28 IIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPI  107 (162)
T ss_pred             eecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCE
Confidence            678999987777777899999999999999999999999999999999999999898888888877766432  247999


Q ss_pred             EEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          84 LIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        84 ilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ++++||+|+.+.....++...+.........+.++++||++|+
T Consensus       108 iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~  150 (162)
T cd04157         108 LFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGE  150 (162)
T ss_pred             EEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCC
Confidence            9999999997654445555544433223345679999999874

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>KOG0081|consensus

Probab=99.92  E-value=4.1e-26  Score=135.93  Aligned_cols=121  Identities=19%  Similarity=0.296  Sum_probs=97.4

Q ss_pred             CCc-ccCCccCceEEEEEE-------------CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHH
Q psy6566           3 EVV-HTSPTIGSNVEEVIW-------------KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEE   68 (126)
Q Consensus         3 ~~~-~~~pTi~~~~~~~~~-------------~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~   68 (126)
                      .|. +..+|+|+.++...+             +.+.+++|||+|||+|+++--.+++.|-+++++||+++..||-+++.|
T Consensus        33 ~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnW  112 (219)
T KOG0081|consen   33 KFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNW  112 (219)
T ss_pred             cccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHH
Confidence            344 677899966644333             457899999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          69 LYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        69 ~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +.++.-.-.-.+..+++++||+|+.+.   +.+.+......+...++|||++||.+|.
T Consensus       113 lSQL~~hAYcE~PDivlcGNK~DL~~~---R~Vs~~qa~~La~kyglPYfETSA~tg~  167 (219)
T KOG0081|consen  113 LSQLQTHAYCENPDIVLCGNKADLEDQ---RVVSEDQAAALADKYGLPYFETSACTGT  167 (219)
T ss_pred             HHHHHHhhccCCCCEEEEcCccchhhh---hhhhHHHHHHHHHHhCCCeeeeccccCc
Confidence            988755433356779999999999764   4454444445556778999999999873

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.92  E-value=3.5e-25  Score=137.46  Aligned_cols=122  Identities=16%  Similarity=0.134  Sum_probs=93.0

Q ss_pred             CCCc-ccCCccCceE-EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566           2 NEVV-HTSPTIGSNV-EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED   77 (126)
Q Consensus         2 ~~~~-~~~pTi~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~   77 (126)
                      |+|. .+.||++... ..+.+++  +.+.+|||+|++++..+++.+++.++++++|||++++.+|+.+..|+..+.+...
T Consensus        25 ~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~  104 (172)
T cd04141          25 HSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRL  104 (172)
T ss_pred             CCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcC
Confidence            4565 7889998444 4566644  7799999999999999999999999999999999999999999887665544323


Q ss_pred             CCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          78 LSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .+++|+++++||+|+....   .+.......+++..++++++|||++|.
T Consensus       105 ~~~~piilvgNK~Dl~~~~---~v~~~~~~~~a~~~~~~~~e~Sa~~~~  150 (172)
T cd04141         105 TEDIPLVLVGNKVDLESQR---QVTTEEGRNLAREFNCPFFETSAALRH  150 (172)
T ss_pred             CCCCCEEEEEEChhhhhcC---ccCHHHHHHHHHHhCCEEEEEecCCCC
Confidence            3579999999999986531   122222223334557799999999874

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.92  E-value=3.3e-25  Score=137.90  Aligned_cols=123  Identities=18%  Similarity=0.230  Sum_probs=89.4

Q ss_pred             CCCc-ccCCccCceE-EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHH-HHHHHhCCC
Q psy6566           2 NEVV-HTSPTIGSNV-EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKE-ELYKMLNHE   76 (126)
Q Consensus         2 ~~~~-~~~pTi~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~-~~~~~~~~~   76 (126)
                      |+|. +|.||++... ..+.+++  +.+.+|||+|++++..++..++++++++++|||++++++|+++.. |+..+.+. 
T Consensus        24 ~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~-  102 (175)
T cd01874          24 NKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-  102 (175)
T ss_pred             CCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-
Confidence            4564 8899999554 3566655  788999999999999999999999999999999999999999975 55444332 


Q ss_pred             CCCCCeEEEEEecCCCCCCCCH-H--------HHHhhcCcCcccCC-ceEEEEeeeeeCC
Q psy6566          77 DLSKAAVLIYANKQDIKNSMSP-V--------EISNLLDLTSIKKQ-QWHIQSCCALTGE  126 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~~~~-~--------~v~~~~~~~~~~~~-~~~~~~~Sa~~~~  126 (126)
                      . +++|+++++||+|+...... +        .+....+...++.. .+.+++|||++|+
T Consensus       103 ~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~  161 (175)
T cd01874         103 C-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQK  161 (175)
T ss_pred             C-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCC
Confidence            2 57999999999998653110 0        11111111122233 3689999999984

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.92  E-value=6.2e-25  Score=140.90  Aligned_cols=123  Identities=15%  Similarity=0.225  Sum_probs=91.7

Q ss_pred             CCCc-ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566           2 NEVV-HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED   77 (126)
Q Consensus         2 ~~~~-~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~   77 (126)
                      ++|. +|.||++.+. ..+.+  +.+.+.+|||+|++.|..+++.+++.+|++++|||++++++|+.+..+|...+... 
T Consensus        24 ~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~-  102 (222)
T cd04173          24 DAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEF-  102 (222)
T ss_pred             CCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-
Confidence            4555 7999999554 45666  45789999999999999999999999999999999999999999976565444332 


Q ss_pred             CCCCeEEEEEecCCCCCCCC-HHH--------HHhhcCcCcccCCc-eEEEEeeeeeC
Q psy6566          78 LSKAAVLIYANKQDIKNSMS-PVE--------ISNLLDLTSIKKQQ-WHIQSCCALTG  125 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~~~-~~~--------v~~~~~~~~~~~~~-~~~~~~Sa~~~  125 (126)
                      .++.|+++|+||+|+..... ...        +....+..+++..+ ++|+||||+++
T Consensus       103 ~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~  160 (222)
T cd04173         103 CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSS  160 (222)
T ss_pred             CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcC
Confidence            26799999999999965311 011        22223334444555 48999999976

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.92  E-value=8.7e-24  Score=129.45  Aligned_cols=124  Identities=36%  Similarity=0.707  Sum_probs=101.0

Q ss_pred             CCcccCCccCceEEEEEE-CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           3 EVVHTSPTIGSNVEEVIW-KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         3 ~~~~~~pTi~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      ++..+.||+++....+.+ +...+.+|||+|++.+...|..+++.++++++|+|++++.++.....++...++.....+.
T Consensus        23 ~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (160)
T cd04156          23 ELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGV  102 (160)
T ss_pred             CcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCC
Confidence            445678999988877777 5689999999999999999999999999999999999998999998888888776544689


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhhcCc-CcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNLLDL-TSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+......+++...+.. ......++++++|||++|+
T Consensus       103 piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~  148 (160)
T cd04156         103 PVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGE  148 (160)
T ss_pred             CEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCC
Confidence            99999999999765555666555432 2334456789999999884

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04122 Rab14 Rab14 subfamily

Probab=99.92  E-value=1.2e-24  Score=134.24  Aligned_cols=118  Identities=23%  Similarity=0.336  Sum_probs=90.9

Q ss_pred             CCc-ccCCccCceE--EEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566           3 EVV-HTSPTIGSNV--EEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED   77 (126)
Q Consensus         3 ~~~-~~~pTi~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~   77 (126)
                      .|. .+.||+|...  ..+.++  .+.+.+|||+|++++...+..++++++++++|+|++++++++.+..|+..+.... 
T Consensus        26 ~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-  104 (166)
T cd04122          26 KFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-  104 (166)
T ss_pred             CCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-
Confidence            344 6678988655  445553  4688999999999999999999999999999999999999999999887765432 


Q ss_pred             CCCCeEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          78 LSKAAVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .++.|+++++||+|+....  ..++..     ..++..+++++++||++|.
T Consensus       105 ~~~~~iiiv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~e~Sa~~~~  150 (166)
T cd04122         105 NPNTVIFLIGNKADLEAQRDVTYEEAK-----QFADENGLLFLECSAKTGE  150 (166)
T ss_pred             CCCCeEEEEEECcccccccCcCHHHHH-----HHHHHcCCEEEEEECCCCC
Confidence            2578999999999997542  222222     1223346789999999884

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04128 Spg1 Spg1p

Probab=99.92  E-value=2.1e-24  Score=135.06  Aligned_cols=122  Identities=18%  Similarity=0.273  Sum_probs=91.9

Q ss_pred             CCCc-ccCCccCceE--EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566           2 NEVV-HTSPTIGSNV--EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE   76 (126)
Q Consensus         2 ~~~~-~~~pTi~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~   76 (126)
                      |+|. +|.||+|.+.  +.+.+++  +.+++|||+|++++..+++.++++++++++|+|++++++++++..|+..+.+..
T Consensus        23 ~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~  102 (182)
T cd04128          23 GEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFN  102 (182)
T ss_pred             CCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC
Confidence            4555 6899999665  4566644  789999999999999999999999999999999999999999999888776543


Q ss_pred             CCCCCeEEEEEecCCCCCCCC---HHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          77 DLSKAAVLIYANKQDIKNSMS---PVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      . ...| ++|+||+|+..+..   .+.+ ....+.+++..+.++++|||++|.
T Consensus       103 ~-~~~p-ilVgnK~Dl~~~~~~~~~~~~-~~~~~~~a~~~~~~~~e~SAk~g~  152 (182)
T cd04128         103 K-TAIP-ILVGTKYDLFADLPPEEQEEI-TKQARKYAKAMKAPLIFCSTSHSI  152 (182)
T ss_pred             C-CCCE-EEEEEchhccccccchhhhhh-HHHHHHHHHHcCCEEEEEeCCCCC
Confidence            2 4567 67899999964211   1111 122223334455789999999874

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>KOG0083|consensus

Probab=99.92  E-value=3.2e-26  Score=132.95  Aligned_cols=116  Identities=17%  Similarity=0.283  Sum_probs=93.4

Q ss_pred             ccCCccCceEE--EEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNVE--EVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      +..+|+|+.++  -+.+  ..+++++|||+|||+|++.-..|++.||+.++++|+++..||++.+.|+.++.+. ....+
T Consensus        26 ~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey-~k~~v  104 (192)
T KOG0083|consen   26 NFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEY-AKEAV  104 (192)
T ss_pred             ceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHH-HHhhH
Confidence            56789996654  4555  6689999999999999999999999999999999999999999999999888554 33567


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      .+.+++||+|+..+   +.+....+...++..++|+.++|||+|
T Consensus       105 ~l~llgnk~d~a~e---r~v~~ddg~kla~~y~ipfmetsaktg  145 (192)
T KOG0083|consen  105 ALMLLGNKCDLAHE---RAVKRDDGEKLAEAYGIPFMETSAKTG  145 (192)
T ss_pred             hHhhhccccccchh---hccccchHHHHHHHHCCCceecccccc
Confidence            89999999999653   233333333344556789999999998

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.92  E-value=2.7e-23  Score=130.27  Aligned_cols=124  Identities=29%  Similarity=0.488  Sum_probs=104.5

Q ss_pred             CCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           3 EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         3 ~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      .+..+.||.+.....+.+++.++.+||++|++.++..|..++++++++++|+|+++++++.....++..+++.....+.|
T Consensus        41 ~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~p  120 (184)
T smart00178       41 RLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVP  120 (184)
T ss_pred             CCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCC
Confidence            34467899998888888899999999999999999999999999999999999999999999988888887765556899


Q ss_pred             EEEEEecCCCCCCCCHHHHHhhcCcCcc-------cCCceEEEEeeeeeCC
Q psy6566          83 VLIYANKQDIKNSMSPVEISNLLDLTSI-------KKQQWHIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~~~~~~~v~~~~~~~~~-------~~~~~~~~~~Sa~~~~  126 (126)
                      +++++||+|+....+.+++...++....       ..+...+++|||++|+
T Consensus       121 iliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~  171 (184)
T smart00178      121 FLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRM  171 (184)
T ss_pred             EEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCC
Confidence            9999999999876677778777764432       2256789999999874

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.92  E-value=4.1e-23  Score=126.26  Aligned_cols=123  Identities=51%  Similarity=0.872  Sum_probs=105.0

Q ss_pred             CcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE
Q psy6566           4 VVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV   83 (126)
Q Consensus         4 ~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi   83 (126)
                      +..+.||+++....+.+++..+.+||+||++.+...+..+++.++++++|+|+++++++.....++..+.+.....+.|+
T Consensus        24 ~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~pi  103 (158)
T cd00878          24 VVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPL  103 (158)
T ss_pred             CCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcE
Confidence            45788999999888999999999999999999999999999999999999999999999999988888877544568999


Q ss_pred             EEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          84 LIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        84 ilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ++++||+|+......+++.+.+.........++++++||++|.
T Consensus       104 iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  146 (158)
T cd00878         104 LIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGD  146 (158)
T ss_pred             EEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCC
Confidence            9999999998765556666665554444567899999999874

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>KOG0091|consensus

Probab=99.92  E-value=2.6e-25  Score=132.95  Aligned_cols=118  Identities=21%  Similarity=0.309  Sum_probs=97.3

Q ss_pred             ccCCccCceE--EEEEE---CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCC-
Q psy6566           6 HTSPTIGSNV--EEVIW---KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLS-   79 (126)
Q Consensus         6 ~~~pTi~~~~--~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~-   79 (126)
                      -..||+|+.+  +-+++   ..+++++|||+|||+|+.+-.+|+++.-++++|+|++++.+|+.+..|+++.......| 
T Consensus        36 lsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~  115 (213)
T KOG0091|consen   36 LSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPD  115 (213)
T ss_pred             cCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCC
Confidence            3479999654  44566   55899999999999999999999999999999999999999999999998875554434 


Q ss_pred             CCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          80 KAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        80 ~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .+-+.+||+|+||...   +++..++++.+++..++.|+++||++|.
T Consensus       116 k~VFlLVGhKsDL~Sq---RqVt~EEaEklAa~hgM~FVETSak~g~  159 (213)
T KOG0091|consen  116 KVVFLLVGHKSDLQSQ---RQVTAEEAEKLAASHGMAFVETSAKNGC  159 (213)
T ss_pred             eeEEEEeccccchhhh---ccccHHHHHHHHHhcCceEEEecccCCC
Confidence            4457889999999753   5566666666777889999999999884

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.92  E-value=1.8e-24  Score=138.92  Aligned_cols=117  Identities=22%  Similarity=0.336  Sum_probs=92.6

Q ss_pred             CCCc-ccCCccCceEEEEEE----CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566           2 NEVV-HTSPTIGSNVEEVIW----KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE   76 (126)
Q Consensus         2 ~~~~-~~~pTi~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~   76 (126)
                      |.+. .+.||+|.......+    +.+.+.+|||+|++++..++..++++++++|+|||++++++++.+..|+..+.+..
T Consensus        36 ~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~  115 (219)
T PLN03071         36 GEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC  115 (219)
T ss_pred             CCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC
Confidence            4555 789999977655444    45899999999999999999999999999999999999999999999888776543


Q ss_pred             CCCCCeEEEEEecCCCCCC-CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          77 DLSKAAVLIYANKQDIKNS-MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                        +++|+++++||+|+... .....+      .+.+..++++++|||++|.
T Consensus       116 --~~~piilvgNK~Dl~~~~v~~~~~------~~~~~~~~~~~e~SAk~~~  158 (219)
T PLN03071        116 --ENIPIVLCGNKVDVKNRQVKAKQV------TFHRKKNLQYYEISAKSNY  158 (219)
T ss_pred             --CCCcEEEEEEchhhhhccCCHHHH------HHHHhcCCEEEEcCCCCCC
Confidence              67999999999998642 122222      1223456789999999874

>KOG0095|consensus

Probab=99.91  E-value=5.3e-25  Score=130.07  Aligned_cols=119  Identities=21%  Similarity=0.268  Sum_probs=96.4

Q ss_pred             CCc-ccCCccC--ceEEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566           3 EVV-HTSPTIG--SNVEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED   77 (126)
Q Consensus         3 ~~~-~~~pTi~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~   77 (126)
                      -|+ ....|||  +..+++.+  ++++++||||+|||+|+..-++|++.|+++++++|++-..+|+-+-+|+.++-+. .
T Consensus        31 lfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~y-a  109 (213)
T KOG0095|consen   31 LFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQY-A  109 (213)
T ss_pred             CCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHH-h
Confidence            344 4568999  55677777  6689999999999999999999999999999999999999999999998887543 3


Q ss_pred             CCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          78 LSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      ...+-.++|+||.|+.+.   +++.+..++.+......-|.++||++.
T Consensus       110 n~kvlkilvgnk~d~~dr---revp~qigeefs~~qdmyfletsakea  154 (213)
T KOG0095|consen  110 NNKVLKILVGNKIDLADR---REVPQQIGEEFSEAQDMYFLETSAKEA  154 (213)
T ss_pred             hcceEEEeeccccchhhh---hhhhHHHHHHHHHhhhhhhhhhcccch
Confidence            356778999999998764   456666666666556667889999864

>cd04136 Rap_like Rap-like subfamily

Probab=99.91  E-value=2.7e-24  Score=131.97  Aligned_cols=119  Identities=18%  Similarity=0.178  Sum_probs=90.9

Q ss_pred             CCc-ccCCccC-ceEEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566           3 EVV-HTSPTIG-SNVEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL   78 (126)
Q Consensus         3 ~~~-~~~pTi~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~   78 (126)
                      .+. .+.||++ .....+.+++  +.+.+|||+|++++..++..++++++++++|+|++++++++.+..|+..+.+....
T Consensus        25 ~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~  104 (163)
T cd04136          25 IFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDT  104 (163)
T ss_pred             CCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence            344 6789988 5456676744  67889999999999999999999999999999999999999999988887665444


Q ss_pred             CCCeEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          79 SKAAVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        79 ~~~piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .+.|+++++||+|+.+..  ...+. .    ...+..+.+++++||++|.
T Consensus       105 ~~~piilv~nK~Dl~~~~~~~~~~~-~----~~~~~~~~~~~~~Sa~~~~  149 (163)
T cd04136         105 ENVPMVLVGNKCDLEDERVVSREEG-Q----ALARQWGCPFYETSAKSKI  149 (163)
T ss_pred             CCCCEEEEEECccccccceecHHHH-H----HHHHHcCCeEEEecCCCCC
Confidence            679999999999986521  11111 1    1112234689999999874

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.91  E-value=3.5e-23  Score=127.55  Aligned_cols=121  Identities=39%  Similarity=0.647  Sum_probs=100.4

Q ss_pred             ccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEE
Q psy6566           6 HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLI   85 (126)
Q Consensus         6 ~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piil   85 (126)
                      .+.||++.+...+.+++..+.+|||||++.+..++..+++.++++++|+|+++++++.....++..+++.....+.|+++
T Consensus        33 ~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~il  112 (167)
T cd04160          33 KITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLI  112 (167)
T ss_pred             ccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEE
Confidence            67899998888888899999999999999999999999999999999999999888998888888887765556899999


Q ss_pred             EEecCCCCCCCCHHHHHhhcCcCc--ccCCceEEEEeeeeeCC
Q psy6566          86 YANKQDIKNSMSPVEISNLLDLTS--IKKQQWHIQSCCALTGE  126 (126)
Q Consensus        86 v~nK~D~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~Sa~~~~  126 (126)
                      ++||+|+.......++...+....  .....++++++||++|+
T Consensus       113 v~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  155 (167)
T cd04160         113 LANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGT  155 (167)
T ss_pred             EEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCc
Confidence            999999977555455544443222  23346789999999884

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.91  E-value=4.2e-23  Score=129.26  Aligned_cols=125  Identities=42%  Similarity=0.705  Sum_probs=96.2

Q ss_pred             CCCcccCCccCceEEEEEE-----CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566           2 NEVVHTSPTIGSNVEEVIW-----KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE   76 (126)
Q Consensus         2 ~~~~~~~pTi~~~~~~~~~-----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~   76 (126)
                      +++..+.||+|+....+.+     +++.+.+|||+|++++..+|..+++.++++++|+|++++++++.+..|+..+.+..
T Consensus        26 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~  105 (183)
T cd04152          26 NEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFS  105 (183)
T ss_pred             CCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhh
Confidence            3556678999977766555     46899999999999999999999999999999999999988988888887776654


Q ss_pred             CCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCc-ccCCceEEEEeeeeeCC
Q psy6566          77 DLSKAAVLIYANKQDIKNSMSPVEISNLLDLTS-IKKQQWHIQSCCALTGE  126 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~Sa~~~~  126 (126)
                      ...+.|+++++||+|+.+....+++........ .....++++++||++|+
T Consensus       106 ~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~  156 (183)
T cd04152         106 ENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGE  156 (183)
T ss_pred             hcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCC
Confidence            445799999999999876444444443333221 12234678999999874

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.91  E-value=5.9e-24  Score=131.74  Aligned_cols=124  Identities=24%  Similarity=0.345  Sum_probs=92.0

Q ss_pred             CCCc-ccCCccCceE--EEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566           2 NEVV-HTSPTIGSNV--EEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE   76 (126)
Q Consensus         2 ~~~~-~~~pTi~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~   76 (126)
                      ++|. .|.||++...  ..+.+.  .+.+++|||+|++++..++..++++++++++|+|+++++++..+..|+..+.+..
T Consensus        23 ~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~  102 (170)
T cd04108          23 DVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKEN  102 (170)
T ss_pred             CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc
Confidence            3455 7899999554  455553  4689999999999999999999999999999999999999999999888876654


Q ss_pred             CCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          77 DLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ...+.|+++|+||+|+...... ...+.......+..+.+++++||++|.
T Consensus       103 ~~~~~~iilVgnK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~e~Sa~~g~  151 (170)
T cd04108         103 DPSSVLLFLVGTKKDLSSPAQY-ALMEQDAIKLAAEMQAEYWSVSALSGE  151 (170)
T ss_pred             CCCCCeEEEEEEChhcCccccc-cccHHHHHHHHHHcCCeEEEEECCCCC
Confidence            3346789999999998643211 111111112223334679999999874

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04175 Rap1 Rap1 subgroup

Probab=99.91  E-value=3.5e-24  Score=131.79  Aligned_cols=120  Identities=16%  Similarity=0.171  Sum_probs=92.2

Q ss_pred             CCCc-ccCCccCce-EEEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566           2 NEVV-HTSPTIGSN-VEEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED   77 (126)
Q Consensus         2 ~~~~-~~~pTi~~~-~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~   77 (126)
                      |.+. .+.||++.. ...+.++  .+.+.+|||+|++++..+++.++++++++++|+|.+++.+++.+.+|+..+.+...
T Consensus        24 ~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~  103 (164)
T cd04175          24 GIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD  103 (164)
T ss_pred             CCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence            3444 678999843 3566664  56788999999999999999999999999999999999999999998888876544


Q ss_pred             CCCCeEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          78 LSKAAVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ..+.|+++++||+|+.+..  ...+. .    ...+..+++++++||++|.
T Consensus       104 ~~~~piilv~nK~Dl~~~~~~~~~~~-~----~~~~~~~~~~~~~Sa~~~~  149 (164)
T cd04175         104 TEDVPMILVGNKCDLEDERVVGKEQG-Q----NLARQWGCAFLETSAKAKI  149 (164)
T ss_pred             CCCCCEEEEEECCcchhccEEcHHHH-H----HHHHHhCCEEEEeeCCCCC
Confidence            4689999999999997532  11111 1    1122334689999999874

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd00879 Sar1 Sar1 subfamily

Probab=99.91  E-value=1e-22  Score=128.03  Aligned_cols=124  Identities=28%  Similarity=0.530  Sum_probs=102.4

Q ss_pred             CCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           3 EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         3 ~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      .+..+.||++.....+.+++..+.+||+||++.++..|..+++.++++++|+|+++.+++.....++..+++.....+.|
T Consensus        43 ~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~p  122 (190)
T cd00879          43 RLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVP  122 (190)
T ss_pred             CCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCC
Confidence            45578899998888888899999999999999999999999999999999999999989988888888888765556799


Q ss_pred             EEEEEecCCCCCCCCHHHHHhhcCcCcc-----------cCCceEEEEeeeeeCC
Q psy6566          83 VLIYANKQDIKNSMSPVEISNLLDLTSI-----------KKQQWHIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~~~~~~~v~~~~~~~~~-----------~~~~~~~~~~Sa~~~~  126 (126)
                      +++++||+|+.......++...+.....           ....+.+++|||++|+
T Consensus       123 vivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  177 (190)
T cd00879         123 FLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQ  177 (190)
T ss_pred             EEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCC
Confidence            9999999999766566666665543211           1234679999999884

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.91  E-value=3e-24  Score=133.50  Aligned_cols=123  Identities=16%  Similarity=0.273  Sum_probs=88.1

Q ss_pred             CCCc-ccCCccCce-EEEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHH-HHHHHhCCC
Q psy6566           2 NEVV-HTSPTIGSN-VEEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKE-ELYKMLNHE   76 (126)
Q Consensus         2 ~~~~-~~~pTi~~~-~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~-~~~~~~~~~   76 (126)
                      |.|. +|.||++.. ...+.++  .+.+.+|||+|++.+..+++.++++++++++|||++++++|+++.. |+..+... 
T Consensus        24 ~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~-  102 (174)
T cd01871          24 NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-  102 (174)
T ss_pred             CCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-
Confidence            4554 889999833 3455553  4789999999999999999999999999999999999999999964 55544333 


Q ss_pred             CCCCCeEEEEEecCCCCCCC-CHHHHH--------hhcCcCcccCCc-eEEEEeeeeeCC
Q psy6566          77 DLSKAAVLIYANKQDIKNSM-SPVEIS--------NLLDLTSIKKQQ-WHIQSCCALTGE  126 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~~-~~~~v~--------~~~~~~~~~~~~-~~~~~~Sa~~~~  126 (126)
                       .++.|+++++||+|+.... ..+.+.        ...+..+++..+ .++++|||++|+
T Consensus       103 -~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  161 (174)
T cd01871         103 -CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQK  161 (174)
T ss_pred             -CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccC
Confidence             2579999999999996421 111111        111112222333 589999999984

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04127 Rab27A Rab27a subfamily

Probab=99.91  E-value=7.7e-24  Score=132.01  Aligned_cols=116  Identities=19%  Similarity=0.369  Sum_probs=89.5

Q ss_pred             ccCCccCceE--EEEEEC------------CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHH
Q psy6566           6 HTSPTIGSNV--EEVIWK------------NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYK   71 (126)
Q Consensus         6 ~~~pTi~~~~--~~~~~~------------~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~   71 (126)
                      .+.||++...  ..+.+.            .+.+.+|||+|++++...+..++++++++++|+|+++++++..+..|+..
T Consensus        32 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~  111 (180)
T cd04127          32 KFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQ  111 (180)
T ss_pred             cCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHH
Confidence            6789998554  334432            37899999999999999999999999999999999999999999998887


Q ss_pred             HhCCCCCCCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          72 MLNHEDLSKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        72 ~~~~~~~~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +......++.|+++|+||+|+.+.  ...++..     .+++..+++++++||++|.
T Consensus       112 i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~-----~~~~~~~~~~~e~Sak~~~  163 (180)
T cd04127         112 LQTHAYCENPDIVLCGNKADLEDQRQVSEEQAK-----ALADKYGIPYFETSAATGT  163 (180)
T ss_pred             HHHhcCCCCCcEEEEEeCccchhcCccCHHHHH-----HHHHHcCCeEEEEeCCCCC
Confidence            755433357899999999999653  2222221     2223345689999999874

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>KOG0097|consensus

Probab=99.91  E-value=3.2e-24  Score=125.87  Aligned_cols=115  Identities=21%  Similarity=0.296  Sum_probs=94.6

Q ss_pred             CCccC--ceEEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE
Q psy6566           8 SPTIG--SNVEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV   83 (126)
Q Consensus         8 ~pTi~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi   83 (126)
                      -.|||  +..+.+.+  +++++++|||+|||+|+...++|++++.+.++|+|++++.+...+..|+....... .++..+
T Consensus        41 phtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~lt-npnt~i  119 (215)
T KOG0097|consen   41 PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVI  119 (215)
T ss_pred             CcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccC-CCceEE
Confidence            35788  44566777  78999999999999999999999999999999999999999999999887764433 367889


Q ss_pred             EEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          84 LIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        84 ilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ++++||.|+...   +++.-+....++..+++.+.++|||+|+
T Consensus       120 ~lignkadle~q---rdv~yeeak~faeengl~fle~saktg~  159 (215)
T KOG0097|consen  120 FLIGNKADLESQ---RDVTYEEAKEFAEENGLMFLEASAKTGQ  159 (215)
T ss_pred             EEecchhhhhhc---ccCcHHHHHHHHhhcCeEEEEecccccC
Confidence            999999999764   3444444456667788999999999984

>cd04117 Rab15 Rab15 subfamily

Probab=99.91  E-value=9.7e-24  Score=129.66  Aligned_cols=121  Identities=17%  Similarity=0.199  Sum_probs=91.4

Q ss_pred             CCCc-ccCCccCceE--EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566           2 NEVV-HTSPTIGSNV--EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE   76 (126)
Q Consensus         2 ~~~~-~~~pTi~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~   76 (126)
                      |++. .+.||+|...  ..+.+.+  +.+.+|||+|++++..++..+++.++++++|||++++++|+.+..|+..+... 
T Consensus        23 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~-  101 (161)
T cd04117          23 NEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEY-  101 (161)
T ss_pred             CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHh-
Confidence            3454 6789999654  5666644  67899999999999999999999999999999999999999999988776543 


Q ss_pred             CCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          77 DLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ...+.|+++++||+|+......   ........++..+.++++|||++|.
T Consensus       102 ~~~~~~iilvgnK~Dl~~~~~v---~~~~~~~~~~~~~~~~~e~Sa~~~~  148 (161)
T cd04117         102 APEGVQKILIGNKADEEQKRQV---GDEQGNKLAKEYGMDFFETSACTNS  148 (161)
T ss_pred             CCCCCeEEEEEECcccccccCC---CHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            2257899999999998654211   1111112222334689999999873

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04109 Rab28 Rab28 subfamily

Probab=99.91  E-value=1.1e-23  Score=134.90  Aligned_cols=121  Identities=19%  Similarity=0.242  Sum_probs=90.6

Q ss_pred             CCc-ccCCccCceE--EEEEEC---CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566           3 EVV-HTSPTIGSNV--EEVIWK---NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE   76 (126)
Q Consensus         3 ~~~-~~~pTi~~~~--~~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~   76 (126)
                      .|. .|.||++...  ..+.+.   .+.+.+|||+|++.+..++..+++.+|++++|||++++++|+.+..|+..+.+..
T Consensus        24 ~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~  103 (215)
T cd04109          24 GFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVL  103 (215)
T ss_pred             CCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            344 7899999554  556662   4789999999999999999999999999999999999999999988877775542


Q ss_pred             C--CCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          77 D--LSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        77 ~--~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .  ..+.|+++++||+|+.....   +.......+++..+++++++||++|+
T Consensus       104 ~~~~~~~piilVgNK~DL~~~~~---v~~~~~~~~~~~~~~~~~~iSAktg~  152 (215)
T cd04109         104 KSSETQPLVVLVGNKTDLEHNRT---VKDDKHARFAQANGMESCLVSAKTGD  152 (215)
T ss_pred             cccCCCceEEEEEECcccccccc---cCHHHHHHHHHHcCCEEEEEECCCCC
Confidence            2  24578999999999964211   11111112223345689999999884

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04144 Ras2 Ras2 subfamily

Probab=99.91  E-value=5.8e-24  Score=133.85  Aligned_cols=122  Identities=20%  Similarity=0.191  Sum_probs=90.6

Q ss_pred             CCCc-ccCCccCce-EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566           2 NEVV-HTSPTIGSN-VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED   77 (126)
Q Consensus         2 ~~~~-~~~pTi~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~   77 (126)
                      |.|. .+.||++.. ...+.+++  +.+++|||+|++++..++..++++++++++|||++++++++.+..|+..+.....
T Consensus        22 ~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~  101 (190)
T cd04144          22 NHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKD  101 (190)
T ss_pred             CCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhc
Confidence            4555 678999843 34555544  5689999999999999999999999999999999999999999988877754322


Q ss_pred             --CCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          78 --LSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        78 --~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                        ..+.|+++++||+|+.....   +.......+++..+++++++||++|.
T Consensus       102 ~~~~~~piilvgNK~Dl~~~~~---v~~~~~~~~~~~~~~~~~e~SAk~~~  149 (190)
T cd04144         102 ESAADVPIMIVGNKCDKVYERE---VSTEEGAALARRLGCEFIEASAKTNV  149 (190)
T ss_pred             ccCCCCCEEEEEEChhccccCc---cCHHHHHHHHHHhCCEEEEecCCCCC
Confidence              25789999999999864321   11111112233445689999999874

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PTZ00369 Ras-like protein; Provisional

Probab=99.91  E-value=1.1e-23  Score=132.44  Aligned_cols=119  Identities=17%  Similarity=0.165  Sum_probs=91.2

Q ss_pred             CCc-ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566           3 EVV-HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL   78 (126)
Q Consensus         3 ~~~-~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~   78 (126)
                      ++. .+.||++... +.+.+  +.+.+.+|||+|++.+..++..+++.++++++|+|++++++++.+..|+..+.+....
T Consensus        29 ~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~  108 (189)
T PTZ00369         29 HFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDK  108 (189)
T ss_pred             CCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence            444 7789998443 45566  4467889999999999999999999999999999999999999999888877665434


Q ss_pred             CCCeEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          79 SKAAVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        79 ~~~piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .++|+++++||+|+.+..  ...+..     ...+..+++++++||++|.
T Consensus       109 ~~~piiiv~nK~Dl~~~~~i~~~~~~-----~~~~~~~~~~~e~Sak~~~  153 (189)
T PTZ00369        109 DRVPMILVGNKCDLDSERQVSTGEGQ-----ELAKSFGIPFLETSAKQRV  153 (189)
T ss_pred             CCCCEEEEEECcccccccccCHHHHH-----HHHHHhCCEEEEeeCCCCC
Confidence            588999999999986531  211111     1122335689999999874

>cd04176 Rap2 Rap2 subgroup

Probab=99.91  E-value=6.6e-24  Score=130.38  Aligned_cols=120  Identities=15%  Similarity=0.186  Sum_probs=91.1

Q ss_pred             CCCc-ccCCccC-ceEEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566           2 NEVV-HTSPTIG-SNVEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED   77 (126)
Q Consensus         2 ~~~~-~~~pTi~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~   77 (126)
                      |.+. .+.||++ +....+.+++  +.+++|||+|++++..++..++++++++++|+|++++.+++++..|+..+.+...
T Consensus        24 ~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~  103 (163)
T cd04176          24 GTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG  103 (163)
T ss_pred             CCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence            3454 6678887 5556676644  5688999999999999999999999999999999999999999998888876544


Q ss_pred             CCCCeEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          78 LSKAAVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ..++|+++++||+|+....  ...+ ..    ......+.+++++||++|.
T Consensus       104 ~~~~piviv~nK~Dl~~~~~~~~~~-~~----~~~~~~~~~~~~~Sa~~~~  149 (163)
T cd04176         104 YEKVPIILVGNKVDLESEREVSSAE-GR----ALAEEWGCPFMETSAKSKT  149 (163)
T ss_pred             CCCCCEEEEEECccchhcCccCHHH-HH----HHHHHhCCEEEEecCCCCC
Confidence            4689999999999986421  1111 11    1112234689999999873

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.90  E-value=1.6e-23  Score=132.92  Aligned_cols=119  Identities=20%  Similarity=0.304  Sum_probs=90.1

Q ss_pred             CCc-ccCCccCce--EEEEEEC---CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCC-
Q psy6566           3 EVV-HTSPTIGSN--VEEVIWK---NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNH-   75 (126)
Q Consensus         3 ~~~-~~~pTi~~~--~~~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~-   75 (126)
                      .+. .+.||+|..  ...+.+.   .+.+.+|||+|++++..+++.++++++++++|||++++++|+.+..|+..+... 
T Consensus        24 ~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~  103 (201)
T cd04107          24 IFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKV  103 (201)
T ss_pred             CCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh
Confidence            344 688999954  3455554   578999999999999999999999999999999999999999998887665432 


Q ss_pred             --CCCCCCeEEEEEecCCCCC--CCCHHHHHhhcCcCcccCCc-eEEEEeeeeeCC
Q psy6566          76 --EDLSKAAVLIYANKQDIKN--SMSPVEISNLLDLTSIKKQQ-WHIQSCCALTGE  126 (126)
Q Consensus        76 --~~~~~~piilv~nK~D~~~--~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~  126 (126)
                        ....++|+++++||+|+..  ....+++...     .+..+ ..++++||++|.
T Consensus       104 ~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~e~Sak~~~  154 (201)
T cd04107         104 TLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQF-----CKENGFIGWFETSAKEGI  154 (201)
T ss_pred             cccCCCCCcEEEEEECCCcccccccCHHHHHHH-----HHHcCCceEEEEeCCCCC
Confidence              1235789999999999963  3333333222     22233 579999999874

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01865 Rab3 Rab3 subfamily

Probab=99.90  E-value=2.6e-23  Score=128.14  Aligned_cols=118  Identities=19%  Similarity=0.288  Sum_probs=89.6

Q ss_pred             CCc-ccCCccCceE--EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566           3 EVV-HTSPTIGSNV--EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED   77 (126)
Q Consensus         3 ~~~-~~~pTi~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~   77 (126)
                      .+. .|.||+|...  ..+..  +.+.+++|||+|++++..++..++++++++++|+|++++++++.+..|+..+.+.. 
T Consensus        25 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~-  103 (165)
T cd01865          25 SFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-  103 (165)
T ss_pred             CCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC-
Confidence            344 6789998544  34444  34789999999999999999999999999999999999999999999887765432 


Q ss_pred             CCCCeEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          78 LSKAAVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ..+.|+++++||+|+.+..  ..++..+     ..+..+++++++||++|.
T Consensus       104 ~~~~piivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~  149 (165)
T cd01865         104 WDNAQVILVGNKCDMEDERVVSSERGRQ-----LADQLGFEFFEASAKENI  149 (165)
T ss_pred             CCCCCEEEEEECcccCcccccCHHHHHH-----HHHHcCCEEEEEECCCCC
Confidence            3578999999999996532  1222211     122345689999999874

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>KOG0395|consensus

Probab=99.90  E-value=2.2e-23  Score=131.35  Aligned_cols=120  Identities=20%  Similarity=0.213  Sum_probs=101.6

Q ss_pred             CCc-ccCCccC-ceEEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566           3 EVV-HTSPTIG-SNVEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL   78 (126)
Q Consensus         3 ~~~-~~~pTi~-~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~   78 (126)
                      .|. .|.||++ .+.+.+.+  +.+.+.|+||+|++.+..+...+++.++++++||+++++.||+.+..++..+++....
T Consensus        27 ~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~  106 (196)
T KOG0395|consen   27 RFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGR  106 (196)
T ss_pred             ccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCc
Confidence            455 7899999 66788888  5578999999999999999999999999999999999999999999999999777666


Q ss_pred             CCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          79 SKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        79 ~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      ..+|+++||||+|+...   ..+....++..+...++.|+|+||+.+
T Consensus       107 ~~~PivlVGNK~Dl~~~---R~V~~eeg~~la~~~~~~f~E~Sak~~  150 (196)
T KOG0395|consen  107 DDVPIILVGNKCDLERE---RQVSEEEGKALARSWGCAFIETSAKLN  150 (196)
T ss_pred             CCCCEEEEEEcccchhc---cccCHHHHHHHHHhcCCcEEEeeccCC
Confidence            77999999999999864   344444444556677788999999875

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.90  E-value=6.3e-22  Score=120.43  Aligned_cols=121  Identities=29%  Similarity=0.524  Sum_probs=100.3

Q ss_pred             ccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEE
Q psy6566           6 HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLI   85 (126)
Q Consensus         6 ~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piil   85 (126)
                      .+.||++++...+..+++.+.+||++|++.+...+..+++.++++++|+|++++.++.....++..+++.....++|+++
T Consensus        27 ~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ii  106 (159)
T cd04159          27 DTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLV  106 (159)
T ss_pred             CccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEE
Confidence            78899998888888888999999999999999999999999999999999999888888888888887654446889999


Q ss_pred             EEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          86 YANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        86 v~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ++||+|+.+.....++.............++++++||++|.
T Consensus       107 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  147 (159)
T cd04159         107 LGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKT  147 (159)
T ss_pred             EEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCC
Confidence            99999987654444455554444444556789999999874

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.90  E-value=1.1e-23  Score=133.05  Aligned_cols=117  Identities=12%  Similarity=0.118  Sum_probs=84.7

Q ss_pred             ccCCccCc-eEE--EE--------EE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHH-HHHH
Q psy6566           6 HTSPTIGS-NVE--EV--------IW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKE-ELYK   71 (126)
Q Consensus         6 ~~~pTi~~-~~~--~~--------~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~-~~~~   71 (126)
                      +|.||+|. ...  ..        .+  +.+.+++|||+|++.  .+...++++++++++|||++++.+|+.+.. |+..
T Consensus        36 ~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~  113 (195)
T cd01873          36 THVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPE  113 (195)
T ss_pred             ccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHH
Confidence            68899963 221  11        23  457899999999975  356678999999999999999999999975 6555


Q ss_pred             HhCCCCCCCCeEEEEEecCCCCCCCC----------------HHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          72 MLNHEDLSKAAVLIYANKQDIKNSMS----------------PVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        72 ~~~~~~~~~~piilv~nK~D~~~~~~----------------~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +.+..  ++.|+++|+||+|+.....                ...+....+..+++..+++|++|||++|+
T Consensus       114 i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~  182 (195)
T cd01873         114 IRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQF  182 (195)
T ss_pred             HHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCC
Confidence            54332  5789999999999864210                12333344445556677899999999984

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>KOG0072|consensus

Probab=99.90  E-value=4.2e-23  Score=121.14  Aligned_cols=125  Identities=48%  Similarity=0.846  Sum_probs=114.4

Q ss_pred             CCCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         2 ~~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      |+...+.||+|++...+..++.++++||.+|+-..++.|+-|+.+.++++||+|.++++...-+...+..+++.+.+++.
T Consensus        41 gevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a  120 (182)
T KOG0072|consen   41 GEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHA  120 (182)
T ss_pred             CcccccCCCCCcCccccccccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCc
Confidence            56668899999999999999999999999999999999999999999999999999999888888889999998888889


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .++++.||+|........++...++....+.+.+.++++||.+|+
T Consensus       121 ~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~  165 (182)
T KOG0072|consen  121 KLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGE  165 (182)
T ss_pred             eEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeecccccc
Confidence            999999999998876777888888888788888999999999874

>KOG0088|consensus

Probab=99.90  E-value=5.2e-25  Score=131.16  Aligned_cols=114  Identities=19%  Similarity=0.230  Sum_probs=92.4

Q ss_pred             CCccC--ceEEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE
Q psy6566           8 SPTIG--SNVEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV   83 (126)
Q Consensus         8 ~pTi~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi   83 (126)
                      .+|+.  |-.+.+.+  ....+.||||+|||+|..+-+.|+++.+++++|||+++++||+.++.|..++....+ ..+.+
T Consensus        43 lsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlG-nei~l  121 (218)
T KOG0088|consen   43 LSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLG-NEIEL  121 (218)
T ss_pred             HHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhC-CeeEE
Confidence            34554  44456666  345799999999999999999999999999999999999999999999988866544 67899


Q ss_pred             EEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          84 LIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        84 ilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      ++|+||+||.++   +.+....++.++..-+..++++||+.+
T Consensus       122 ~IVGNKiDLEee---R~Vt~qeAe~YAesvGA~y~eTSAk~N  160 (218)
T KOG0088|consen  122 LIVGNKIDLEEE---RQVTRQEAEAYAESVGALYMETSAKDN  160 (218)
T ss_pred             EEecCcccHHHh---hhhhHHHHHHHHHhhchhheecccccc
Confidence            999999999764   444444555666667778999999976

>cd04111 Rab39 Rab39 subfamily

Probab=99.90  E-value=5.7e-23  Score=131.26  Aligned_cols=119  Identities=24%  Similarity=0.364  Sum_probs=91.2

Q ss_pred             CCc-ccCCccCceE--EEEEE---CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566           3 EVV-HTSPTIGSNV--EEVIW---KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE   76 (126)
Q Consensus         3 ~~~-~~~pTi~~~~--~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~   76 (126)
                      .+. .+.||+|...  ..+.+   ..+.+++|||+|++++..++..+++.++++++|||++++++++++.+|+..+.+..
T Consensus        26 ~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~  105 (211)
T cd04111          26 RFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHI  105 (211)
T ss_pred             CCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            344 5679998554  44555   24789999999999999999999999999999999999999999999988886654


Q ss_pred             CCCCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          77 DLSKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .....|+++++||+|+...  ....+.     ..+++..+++++++||++|+
T Consensus       106 ~~~~~~iilvgNK~Dl~~~~~v~~~~~-----~~~~~~~~~~~~e~Sak~g~  152 (211)
T cd04111         106 QPHRPVFILVGHKCDLESQRQVTREEA-----EKLAKDLGMKYIETSARTGD  152 (211)
T ss_pred             CCCCCeEEEEEEccccccccccCHHHH-----HHHHHHhCCEEEEEeCCCCC
Confidence            3356789999999998653  122221     12233445789999999874

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.89  E-value=1.5e-22  Score=125.01  Aligned_cols=114  Identities=20%  Similarity=0.294  Sum_probs=90.4

Q ss_pred             ccCCccCceEEEEEE----CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNVEEVIW----KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++.......+    +.+.+.+|||+|++.+..++..+++.+|++++|+|+++++++..+..|+..+.+..  .++
T Consensus        28 ~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~  105 (166)
T cd00877          28 KYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--GNI  105 (166)
T ss_pred             CCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCC
Confidence            688999977666555    45789999999999999999999999999999999999999999988888876553  379


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+.......+..     .......++++++||++|+
T Consensus       106 piiiv~nK~Dl~~~~~~~~~~-----~~~~~~~~~~~e~Sa~~~~  145 (166)
T cd00877         106 PIVLCGNKVDIKDRKVKAKQI-----TFHRKKNLQYYEISAKSNY  145 (166)
T ss_pred             cEEEEEEchhcccccCCHHHH-----HHHHHcCCEEEEEeCCCCC
Confidence            999999999997422111111     1223456789999999884

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04134 Rho3 Rho3 subfamily

Probab=99.89  E-value=2.7e-23  Score=130.75  Aligned_cols=123  Identities=18%  Similarity=0.276  Sum_probs=88.8

Q ss_pred             CCCc-ccCCccCceE-EEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHhCCC
Q psy6566           2 NEVV-HTSPTIGSNV-EEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK-EELYKMLNHE   76 (126)
Q Consensus         2 ~~~~-~~~pTi~~~~-~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~-~~~~~~~~~~   76 (126)
                      |.+. .|.||++... ..+.++  .+.+.+|||+|++.+..++..+++.++++++|||++++++|+.+. .|+..+....
T Consensus        23 ~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~  102 (189)
T cd04134          23 GYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC  102 (189)
T ss_pred             CCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC
Confidence            3454 6789998554 445553  478999999999999999999999999999999999999999886 4666655432


Q ss_pred             CCCCCeEEEEEecCCCCCCCCHHHH---------HhhcCcCcccC-CceEEEEeeeeeCC
Q psy6566          77 DLSKAAVLIYANKQDIKNSMSPVEI---------SNLLDLTSIKK-QQWHIQSCCALTGE  126 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~~~~~~v---------~~~~~~~~~~~-~~~~~~~~Sa~~~~  126 (126)
                        ++.|+++++||+|+.......+.         ....+...+.. ..+++++|||++|.
T Consensus       103 --~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~  160 (189)
T cd04134         103 --PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNR  160 (189)
T ss_pred             --CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCC
Confidence              57999999999999764221111         11111222222 23689999999874

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04140 ARHI_like ARHI subfamily

Probab=99.89  E-value=5.8e-23  Score=126.58  Aligned_cols=121  Identities=15%  Similarity=0.120  Sum_probs=88.1

Q ss_pred             CCc-ccCCccCce-EEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCC--C
Q psy6566           3 EVV-HTSPTIGSN-VEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNH--E   76 (126)
Q Consensus         3 ~~~-~~~pTi~~~-~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~--~   76 (126)
                      .|. .+.||++.. ...+..  +...+.+|||+|++++..++..+++.++++++|+|++++++++.+..|+..+.+.  .
T Consensus        25 ~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~  104 (165)
T cd04140          25 TFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGN  104 (165)
T ss_pred             CCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcC
Confidence            444 678998833 344444  5578999999999999999999999999999999999999999998887655432  1


Q ss_pred             CCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          77 DLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ..+++|+++++||+|+.....   +............++++++|||++|+
T Consensus       105 ~~~~~piilv~nK~Dl~~~~~---v~~~~~~~~~~~~~~~~~e~SA~~g~  151 (165)
T cd04140         105 NIEKIPIMLVGNKCDESHKRE---VSSNEGAACATEWNCAFMETSAKTNH  151 (165)
T ss_pred             CCCCCCEEEEEECccccccCe---ecHHHHHHHHHHhCCcEEEeecCCCC
Confidence            225789999999999965211   11111112223345679999999884

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.89  E-value=6.1e-23  Score=125.84  Aligned_cols=119  Identities=17%  Similarity=0.228  Sum_probs=86.4

Q ss_pred             CCCc-ccCCccCceEEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566           2 NEVV-HTSPTIGSNVEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL   78 (126)
Q Consensus         2 ~~~~-~~~pTi~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~   78 (126)
                      |.|. .+.||.+.....+.+++  +.+.+|||+|++..     .+++.++++++|||++++++|+++..|+..+......
T Consensus        23 ~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~   97 (158)
T cd04103          23 GSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPDA-----QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNI   97 (158)
T ss_pred             CCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCch-----hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence            3455 35566555556777765  67999999999763     3678899999999999999999999998888766544


Q ss_pred             CCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccC-CceEEEEeeeeeCC
Q psy6566          79 SKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKK-QQWHIQSCCALTGE  126 (126)
Q Consensus        79 ~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~  126 (126)
                      +++|+++++||+|+.... .+++....+..+++. ..+.|++|||++|.
T Consensus        98 ~~~piilvgnK~Dl~~~~-~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~  145 (158)
T cd04103          98 SEIPLILVGTQDAISESN-PRVIDDARARQLCADMKRCSYYETCATYGL  145 (158)
T ss_pred             CCCCEEEEeeHHHhhhcC-CcccCHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            679999999999985311 122333222233323 35789999999874

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04110 Rab35 Rab35 subfamily

Probab=99.89  E-value=1.3e-22  Score=128.57  Aligned_cols=114  Identities=23%  Similarity=0.263  Sum_probs=88.7

Q ss_pred             ccCCccCceE--EEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNV--EEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .|.||++...  ..+.+.  .+.+.+|||+|++.+..++..+++.++++++|+|++++++++.+..|+..+....  ...
T Consensus        34 ~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~--~~~  111 (199)
T cd04110          34 SYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC--DDV  111 (199)
T ss_pred             CcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCC
Confidence            6889999554  555553  3689999999999999999999999999999999999999999999888765443  578


Q ss_pred             eEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+....  ...+...     +.+..+++++++||++|.
T Consensus       112 piivVgNK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~e~Sa~~~~  153 (199)
T cd04110         112 CKVLVGNKNDDPERKVVETEDAYK-----FAGQMGISLFETSAKENI  153 (199)
T ss_pred             CEEEEEECcccccccccCHHHHHH-----HHHHcCCEEEEEECCCCc
Confidence            999999999987532  1122211     122334689999999874

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.89  E-value=1.4e-22  Score=124.70  Aligned_cols=116  Identities=27%  Similarity=0.353  Sum_probs=89.8

Q ss_pred             ccCCccCceE--EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC----
Q psy6566           6 HTSPTIGSNV--EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED----   77 (126)
Q Consensus         6 ~~~pTi~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~----   77 (126)
                      .+.||++...  ..+.+  ..+.+.+|||+|++.+..++..+++.++++++|+|.+++++++.+..|+..+.+...    
T Consensus        28 ~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~  107 (168)
T cd04119          28 KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGN  107 (168)
T ss_pred             CCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccc
Confidence            7889999654  45555  457899999999999999999999999999999999999999999888887765432    


Q ss_pred             CCCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          78 LSKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ..+.|+++++||+|+...  ....+...     +....+++++++||++|.
T Consensus       108 ~~~~piilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~  153 (168)
T cd04119         108 MENIVVVVCANKIDLTKHRAVSEDEGRL-----WAESKGFKYFETSACTGE  153 (168)
T ss_pred             CCCceEEEEEEchhcccccccCHHHHHH-----HHHHcCCeEEEEECCCCC
Confidence            246899999999998632  22222211     222344689999999874

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.89  E-value=1.2e-22  Score=124.22  Aligned_cols=119  Identities=18%  Similarity=0.190  Sum_probs=90.6

Q ss_pred             CCc-ccCCccCce-EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566           3 EVV-HTSPTIGSN-VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL   78 (126)
Q Consensus         3 ~~~-~~~pTi~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~   78 (126)
                      ++. ++.||++.. ...+.+++  +.+.+|||+|++.+..++..+++.++++++|+|++++.+++++..|+..+.+....
T Consensus        25 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~  104 (162)
T cd04138          25 HFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDS  104 (162)
T ss_pred             CCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence            444 678998833 45566644  56889999999999999999999999999999999999999998888888765444


Q ss_pred             CCCeEEEEEecCCCCCC-CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          79 SKAAVLIYANKQDIKNS-MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        79 ~~~piilv~nK~D~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .+.|+++++||+|+... ....+....     .+..+++++++||++|.
T Consensus       105 ~~~piivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~  148 (162)
T cd04138         105 DDVPMVLVGNKCDLAARTVSSRQGQDL-----AKSYGIPYIETSAKTRQ  148 (162)
T ss_pred             CCCCEEEEEECcccccceecHHHHHHH-----HHHhCCeEEEecCCCCC
Confidence            67899999999998652 122222111     12335689999999874

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.89  E-value=8.3e-23  Score=126.47  Aligned_cols=118  Identities=19%  Similarity=0.298  Sum_probs=89.1

Q ss_pred             CCc-ccCCccCceE--EEEEECC--EEEEEEEcCCCcchH-HHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566           3 EVV-HTSPTIGSNV--EEVIWKN--IHFIMWDLGGQQSLR-AAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE   76 (126)
Q Consensus         3 ~~~-~~~pTi~~~~--~~~~~~~--~~~~i~Dt~G~~~~~-~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~   76 (126)
                      .+. .+.||++...  ..+.+.+  ..+.+|||+|++.++ .++..+++.+|++++|+|+++++++..+..|+..+....
T Consensus        26 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~  105 (170)
T cd04115          26 RFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHS  105 (170)
T ss_pred             CCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhc
Confidence            444 6789998544  4555644  789999999999987 578889999999999999999999999999887776554


Q ss_pred             CCCCCeEEEEEecCCCCCCCCH-HHHHhhcCcCcccCCceEEEEeeeee
Q psy6566          77 DLSKAAVLIYANKQDIKNSMSP-VEISNLLDLTSIKKQQWHIQSCCALT  124 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~Sa~~  124 (126)
                      ...++|+++++||+|+...... .+....    .++...++++++||++
T Consensus       106 ~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~~e~Sa~~  150 (170)
T cd04115         106 LPNEVPRILVGNKCDLREQIQVPTDLAQR----FADAHSMPLFETSAKD  150 (170)
T ss_pred             CCCCCCEEEEEECccchhhcCCCHHHHHH----HHHHcCCcEEEEeccC
Confidence            4467999999999998653211 111221    2223457899999998

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.89  E-value=1.3e-22  Score=125.00  Aligned_cols=115  Identities=23%  Similarity=0.310  Sum_probs=88.6

Q ss_pred             ccCCccCce--EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++..  ...+.+++  +.+++|||+|++++..++..+++.++++++|+|+++++++..+..|+..+.+.. .++.
T Consensus        30 ~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~-~~~~  108 (166)
T cd01869          30 SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYA-SENV  108 (166)
T ss_pred             CCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCC
Confidence            677888854  45565543  678999999999999999999999999999999999999999999887775442 2578


Q ss_pred             eEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+....  ..++...     +....+++++++||++|.
T Consensus       109 ~~iiv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~  150 (166)
T cd01869         109 NKLLVGNKCDLTDKRVVDYSEAQE-----FADELGIPFLETSAKNAT  150 (166)
T ss_pred             cEEEEEEChhcccccCCCHHHHHH-----HHHHcCCeEEEEECCCCc
Confidence            999999999986532  1222211     222345689999999874

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.89  E-value=1.8e-22  Score=124.65  Aligned_cols=118  Identities=20%  Similarity=0.280  Sum_probs=90.5

Q ss_pred             CCc-ccCCccCceE--EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566           3 EVV-HTSPTIGSNV--EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED   77 (126)
Q Consensus         3 ~~~-~~~pTi~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~   77 (126)
                      .|. .|.||++...  ..+.+.+  +.+++|||+|++.+...+..+++++|++++|+|+++++++..+.+|+..+.+.. 
T Consensus        27 ~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~-  105 (167)
T cd01867          27 SFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHA-  105 (167)
T ss_pred             cCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-
Confidence            344 6789999654  4556643  689999999999999999999999999999999999999999999888776542 


Q ss_pred             CCCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          78 LSKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ..+.|+++++||+|+.+.  ...++...     .+...+.+++++||++|.
T Consensus       106 ~~~~p~iiv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~  151 (167)
T cd01867         106 SEDVERMLVGNKCDMEEKRVVSKEEGEA-----LADEYGIKFLETSAKANI  151 (167)
T ss_pred             CCCCcEEEEEECcccccccCCCHHHHHH-----HHHHcCCEEEEEeCCCCC
Confidence            367899999999999753  22222221     222345689999999873

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.89  E-value=1.2e-21  Score=127.64  Aligned_cols=121  Identities=17%  Similarity=0.163  Sum_probs=93.8

Q ss_pred             CCCc-ccCCccC-ceEEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC-
Q psy6566           2 NEVV-HTSPTIG-SNVEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE-   76 (126)
Q Consensus         2 ~~~~-~~~pTi~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~-   76 (126)
                      |+|. +|.||++ +..+.+.+++  +.+.+|||+|++.|..++..++..+|++++|||++++++|+++..|+.++.+.. 
T Consensus        23 ~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~  102 (247)
T cd04143          23 GRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKS  102 (247)
T ss_pred             CCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhc
Confidence            4555 7889998 5566677744  788999999999999999989999999999999999999999998888876531 


Q ss_pred             -------CCCCCeEEEEEecCCCCC--CCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          77 -------DLSKAAVLIYANKQDIKN--SMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        77 -------~~~~~piilv~nK~D~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                             ...+.|+++++||+|+..  +...+++......    ...+.++++||++|.
T Consensus       103 ~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~----~~~~~~~evSAktg~  157 (247)
T cd04143         103 CLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG----DENCAYFEVSAKKNS  157 (247)
T ss_pred             ccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh----cCCCEEEEEeCCCCC
Confidence                   225789999999999964  3333444333321    235679999999874

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>PLN03110 Rab GTPase; Provisional

Probab=99.89  E-value=1.6e-22  Score=129.63  Aligned_cols=116  Identities=24%  Similarity=0.334  Sum_probs=89.8

Q ss_pred             ccCCccCceE--EEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNV--EEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||+|...  ..+.++  .+.+++|||+|++++..++..+++.++++++|+|++++.+++.+..|+..+.+.. ..++
T Consensus        40 ~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~  118 (216)
T PLN03110         40 ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHA-DSNI  118 (216)
T ss_pred             CCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-CCCC
Confidence            6789999665  555554  4789999999999999999999999999999999999999999998887765442 2579


Q ss_pred             eEEEEEecCCCCCCCCH-HHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSP-VEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+.+.... .+...    ......+++++++||++|.
T Consensus       119 piiiv~nK~Dl~~~~~~~~~~~~----~l~~~~~~~~~e~SA~~g~  160 (216)
T PLN03110        119 VIMMAGNKSDLNHLRSVAEEDGQ----ALAEKEGLSFLETSALEAT  160 (216)
T ss_pred             eEEEEEEChhcccccCCCHHHHH----HHHHHcCCEEEEEeCCCCC
Confidence            99999999998653211 11111    1222346789999999874

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.88  E-value=1.7e-22  Score=123.83  Aligned_cols=114  Identities=20%  Similarity=0.342  Sum_probs=88.2

Q ss_pred             ccCCccCceE--EEEEEC----CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCC
Q psy6566           6 HTSPTIGSNV--EEVIWK----NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLS   79 (126)
Q Consensus         6 ~~~pTi~~~~--~~~~~~----~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~   79 (126)
                      .+.||++...  ..+.+.    .+.+++|||||++.+...+..++++++++++|+|++++++++.+..|+..+.+..  .
T Consensus        28 ~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~--~  105 (162)
T cd04106          28 DYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC--G  105 (162)
T ss_pred             CCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--C
Confidence            6789998654  444443    5789999999999999999999999999999999999999999988887765432  5


Q ss_pred             CCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          80 KAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        80 ~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ++|+++++||+|+...  ...++..     ...+..+++++++||++|.
T Consensus       106 ~~p~iiv~nK~Dl~~~~~v~~~~~~-----~~~~~~~~~~~~~Sa~~~~  149 (162)
T cd04106         106 DIPMVLVQTKIDLLDQAVITNEEAE-----ALAKRLQLPLFRTSVKDDF  149 (162)
T ss_pred             CCCEEEEEEChhcccccCCCHHHHH-----HHHHHcCCeEEEEECCCCC
Confidence            7999999999998653  2222221     1122345689999999873

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.88  E-value=2e-22  Score=123.82  Aligned_cols=116  Identities=21%  Similarity=0.201  Sum_probs=88.6

Q ss_pred             ccCCccC-ceEEEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           6 HTSPTIG-SNVEEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         6 ~~~pTi~-~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      .+.||++ .....+.++  .+.+.+|||+|++++..++..+++.++++++|+|++++++++.+..|+..+.+.....+.|
T Consensus        28 ~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p  107 (164)
T smart00173       28 DYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVP  107 (164)
T ss_pred             ccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            6678887 444555563  4688999999999999999999999999999999999999999988887776554445789


Q ss_pred             EEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          83 VLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +++++||+|+....  ..+....     ..+..+.+++++||++|.
T Consensus       108 ii~v~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~  148 (164)
T smart00173      108 IVLVGNKCDLESERVVSTEEGKE-----LARQWGCPFLETSAKERV  148 (164)
T ss_pred             EEEEEECccccccceEcHHHHHH-----HHHHcCCEEEEeecCCCC
Confidence            99999999986532  1122111     122234689999999874

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>KOG0074|consensus

Probab=99.88  E-value=2.4e-22  Score=117.73  Aligned_cols=123  Identities=42%  Similarity=0.737  Sum_probs=110.7

Q ss_pred             CcccCCccCceEEEEEE-CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           4 VVHTSPTIGSNVEEVIW-KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         4 ~~~~~pTi~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      +.+-.||-||+.+.++. +..++.+||.+||...+..|..|+++.|+++||+|.++...|++....+-++++.......|
T Consensus        42 ~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vp  121 (185)
T KOG0074|consen   42 PRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVP  121 (185)
T ss_pred             hhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccc
Confidence            34667999999999999 55999999999999999999999999999999999999999999999999998888778999


Q ss_pred             EEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          83 VLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +++..||+|+..+...++++......-.+.+.+++.+|||.+++
T Consensus       122 vlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~e  165 (185)
T KOG0074|consen  122 VLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLE  165 (185)
T ss_pred             eeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCcccccc
Confidence            99999999998766677787777777778889999999999764

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.88  E-value=2.6e-22  Score=123.25  Aligned_cols=116  Identities=20%  Similarity=0.204  Sum_probs=88.9

Q ss_pred             ccCCccCce-EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           6 HTSPTIGSN-VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         6 ~~~pTi~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      .+.||++.. ...+.+++  +.+.+|||||++++..++..+++.++++++|+|++++.+++.+..|+..+.+.....++|
T Consensus        30 ~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p  109 (164)
T cd04145          30 DYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFP  109 (164)
T ss_pred             ccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            677888833 44555644  678999999999999999999999999999999999999999999888876643335789


Q ss_pred             EEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          83 VLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +++++||+|+....  ...+..     ...+..+++++++||++|.
T Consensus       110 iiiv~NK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~  150 (164)
T cd04145         110 MILVGNKADLEHQRKVSREEGQ-----ELARKLKIPYIETSAKDRL  150 (164)
T ss_pred             EEEEeeCccccccceecHHHHH-----HHHHHcCCcEEEeeCCCCC
Confidence            99999999986532  111211     1222345689999999874

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04125 RabA_like RabA-like subfamily

Probab=99.88  E-value=3.5e-22  Score=125.49  Aligned_cols=119  Identities=24%  Similarity=0.291  Sum_probs=90.2

Q ss_pred             CCCc-ccCCccCce--EEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566           2 NEVV-HTSPTIGSN--VEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE   76 (126)
Q Consensus         2 ~~~~-~~~pTi~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~   76 (126)
                      +.+. .|.||+|..  ...+.+  +.+.+++|||+|++.+...+..++++++++++|||+++++++..+..|+..+....
T Consensus        23 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~  102 (188)
T cd04125          23 DEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYA  102 (188)
T ss_pred             CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC
Confidence            3455 488999954  455666  34678999999999999999999999999999999999999999999887775432


Q ss_pred             CCCCCeEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          77 DLSKAAVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                       ..+.|+++++||+|+.+..  ..... .    .++...+++++++||++|.
T Consensus       103 -~~~~~~ivv~nK~Dl~~~~~v~~~~~-~----~~~~~~~~~~~evSa~~~~  148 (188)
T cd04125         103 -RENVIKVIVANKSDLVNNKVVDSNIA-K----SFCDSLNIPFFETSAKQSI  148 (188)
T ss_pred             -CCCCeEEEEEECCCCcccccCCHHHH-H----HHHHHcCCeEEEEeCCCCC
Confidence             2468999999999987532  21211 1    1222345689999999873

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04155 Arl3 Arl3 subfamily

Probab=99.88  E-value=5.5e-21  Score=118.40  Aligned_cols=123  Identities=39%  Similarity=0.767  Sum_probs=102.2

Q ss_pred             CcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE
Q psy6566           4 VVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV   83 (126)
Q Consensus         4 ~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi   83 (126)
                      +..+.||.|++...+.+++..+.+||++|+..+...+..+++.++++++|+|+++..++.....++...++.....++|+
T Consensus        39 ~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~  118 (173)
T cd04155          39 ISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPV  118 (173)
T ss_pred             CcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCE
Confidence            34578999998888888999999999999999999999999999999999999998888888888877776544467999


Q ss_pred             EEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          84 LIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        84 ilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ++++||+|+.......++...+.......+.++++++||++|+
T Consensus       119 ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~  161 (173)
T cd04155         119 LVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGE  161 (173)
T ss_pred             EEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCC
Confidence            9999999997655556666666555445556778999999884

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01868 Rab11_like Rab11-like

Probab=99.88  E-value=4e-22  Score=122.66  Aligned_cols=115  Identities=24%  Similarity=0.384  Sum_probs=88.7

Q ss_pred             ccCCccCceE--EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNV--EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++...  ..+.+++  ..+.+||++|++++..++..+++.++++++|+|++++.++.++.+|+..+.+.. ..+.
T Consensus        31 ~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~  109 (165)
T cd01868          31 DSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHA-DSNI  109 (165)
T ss_pred             CCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCC
Confidence            6789998654  4455544  679999999999999999999999999999999999999999999888776543 2468


Q ss_pred             eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+...  ...++....     ....+++++++||++|.
T Consensus       110 pi~vv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~  151 (165)
T cd01868         110 VIMLVGNKSDLRHLRAVPTEEAKAF-----AEKNGLSFIETSALDGT  151 (165)
T ss_pred             eEEEEEECccccccccCCHHHHHHH-----HHHcCCEEEEEECCCCC
Confidence            99999999998653  222222222     12245689999999874

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.88  E-value=4.6e-22  Score=122.23  Aligned_cols=115  Identities=18%  Similarity=0.245  Sum_probs=87.9

Q ss_pred             ccCCccCceE--EEEEE---CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCC
Q psy6566           6 HTSPTIGSNV--EEVIW---KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK   80 (126)
Q Consensus         6 ~~~pTi~~~~--~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~   80 (126)
                      ++.||+|...  ..+.+   ..+.+.+|||+|++.+..++..+++.+|++++|+|++++++++.+..|+..+.+..  .+
T Consensus        30 ~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~  107 (164)
T cd04101          30 NYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS--KH  107 (164)
T ss_pred             cCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CC
Confidence            7889998654  44444   44899999999999999999999999999999999999999999988887765543  56


Q ss_pred             CeEEEEEecCCCCCCCCH-HHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          81 AAVLIYANKQDIKNSMSP-VEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        81 ~piilv~nK~D~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .|+++++||+|+.+.... ......    .....+.+++++||++|.
T Consensus       108 ~p~ilv~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~~~  150 (164)
T cd04101         108 MPGVLVGNKMDLADKAEVTDAQAQA----FAQANQLKFFKTSALRGV  150 (164)
T ss_pred             CCEEEEEECcccccccCCCHHHHHH----HHHHcCCeEEEEeCCCCC
Confidence            899999999998653211 111111    122334679999999874

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.88  E-value=1.7e-21  Score=123.49  Aligned_cols=93  Identities=26%  Similarity=0.436  Sum_probs=77.0

Q ss_pred             CCCc-ccCCccCce--EEEEEE-------CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHH
Q psy6566           2 NEVV-HTSPTIGSN--VEEVIW-------KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYK   71 (126)
Q Consensus         2 ~~~~-~~~pTi~~~--~~~~~~-------~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~   71 (126)
                      +.|. ++.||+|..  .+.+++       +.+.+++|||+|++++..++..++++++++++|||++++++++++..|+.+
T Consensus        23 ~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~e  102 (202)
T cd04102          23 NQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLE  102 (202)
T ss_pred             CCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHH
Confidence            3444 788999944  345555       246899999999999999999999999999999999999999999999888


Q ss_pred             HhCCC------------------CCCCCeEEEEEecCCCCC
Q psy6566          72 MLNHE------------------DLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        72 ~~~~~------------------~~~~~piilv~nK~D~~~   94 (126)
                      +....                  ...++|+++||||+|+..
T Consensus       103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~  143 (202)
T cd04102         103 ALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP  143 (202)
T ss_pred             HHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence            86531                  124789999999999865

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04112 Rab26 Rab26 subfamily

Probab=99.88  E-value=5.4e-22  Score=125.00  Aligned_cols=115  Identities=18%  Similarity=0.313  Sum_probs=88.1

Q ss_pred             ccCCccCceEE--EEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNVE--EVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++....  .+.++  .+.+.+|||||++++...+..+++.++++++|+|++++++++++..|+..+.+.. ..++
T Consensus        29 ~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~  107 (191)
T cd04112          29 NFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYA-QEDV  107 (191)
T ss_pred             CcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCC
Confidence            67889985543  45564  4789999999999999999999999999999999999999999998887776542 2578


Q ss_pred             eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+...  ....+...     .....+.+++++||++|+
T Consensus       108 piiiv~NK~Dl~~~~~~~~~~~~~-----l~~~~~~~~~e~Sa~~~~  149 (191)
T cd04112         108 VIMLLGNKADMSGERVVKREDGER-----LAKEYGVPFMETSAKTGL  149 (191)
T ss_pred             cEEEEEEcccchhccccCHHHHHH-----HHHHcCCeEEEEeCCCCC
Confidence            99999999999642  22222211     112334689999999874

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.88  E-value=1e-22  Score=124.95  Aligned_cols=118  Identities=25%  Similarity=0.350  Sum_probs=92.5

Q ss_pred             CCc-ccCCccCceEEEEEE----CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566           3 EVV-HTSPTIGSNVEEVIW----KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED   77 (126)
Q Consensus         3 ~~~-~~~pTi~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~   77 (126)
                      .|. ++.||+|.......+    ..+.+++||++|++++..++..+++++++++++||++++++++.+..|+..+.....
T Consensus        23 ~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~  102 (162)
T PF00071_consen   23 EFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP  102 (162)
T ss_dssp             STTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            344 788999866554444    557899999999999999999999999999999999999999999988887765542


Q ss_pred             CCCCeEEEEEecCCCCC--CCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          78 LSKAAVLIYANKQDIKN--SMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                       .+.|+++++||+|+..  +.+..+.     ..+++..+.+|+++||+++.
T Consensus       103 -~~~~iivvg~K~D~~~~~~v~~~~~-----~~~~~~~~~~~~e~Sa~~~~  147 (162)
T PF00071_consen  103 -EDIPIIVVGNKSDLSDEREVSVEEA-----QEFAKELGVPYFEVSAKNGE  147 (162)
T ss_dssp             -TTSEEEEEEETTTGGGGSSSCHHHH-----HHHHHHTTSEEEEEBTTTTT
T ss_pred             -ccccceeeeccccccccccchhhHH-----HHHHHHhCCEEEEEECCCCC
Confidence             4689999999999875  3333322     22233445789999999863

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04116 Rab9 Rab9 subfamily

Probab=99.87  E-value=7.2e-22  Score=122.11  Aligned_cols=117  Identities=16%  Similarity=0.274  Sum_probs=88.4

Q ss_pred             ccCCccCceE--EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC---C
Q psy6566           6 HTSPTIGSNV--EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED---L   78 (126)
Q Consensus         6 ~~~pTi~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~---~   78 (126)
                      .+.||+|...  ..+.+  +.+.+++|||+|++++..++..+++.++++++|+|++++++++.+..|...+++...   .
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~  112 (170)
T cd04116          33 QLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEP  112 (170)
T ss_pred             CcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccC
Confidence            5678988654  45555  447889999999999999999999999999999999999999999888877765322   2


Q ss_pred             CCCeEEEEEecCCCCC-CCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          79 SKAAVLIYANKQDIKN-SMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        79 ~~~piilv~nK~D~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .++|+++++||+|+.. .....++.+...    .....+++++||++|.
T Consensus       113 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~  157 (170)
T cd04116         113 ESFPFVVLGNKNDIPERQVSTEEAQAWCR----ENGDYPYFETSAKDAT  157 (170)
T ss_pred             CCCcEEEEEECccccccccCHHHHHHHHH----HCCCCeEEEEECCCCC
Confidence            4689999999999864 233333322211    1122479999999874

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.87  E-value=2.3e-22  Score=124.84  Aligned_cols=122  Identities=16%  Similarity=0.212  Sum_probs=85.8

Q ss_pred             CCc-ccCCccC-ceEEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHhCCCC
Q psy6566           3 EVV-HTSPTIG-SNVEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK-EELYKMLNHED   77 (126)
Q Consensus         3 ~~~-~~~pTi~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~-~~~~~~~~~~~   77 (126)
                      .+. +|.||+. .....+.+++  +.+++|||+|++++..++..++++++++++|+|++++++|+.+. .|+..+...  
T Consensus        24 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~--  101 (173)
T cd04130          24 GYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKH--  101 (173)
T ss_pred             CCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhh--
Confidence            344 6788875 3334555644  68899999999999999999999999999999999999999885 455555432  


Q ss_pred             CCCCeEEEEEecCCCCCCCC---------HHHHHhhcCcCcccCCce-EEEEeeeeeCC
Q psy6566          78 LSKAAVLIYANKQDIKNSMS---------PVEISNLLDLTSIKKQQW-HIQSCCALTGE  126 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~~~---------~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~  126 (126)
                      .++.|+++++||+|+.....         ...+.......+++..+. ++++|||++|.
T Consensus       102 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~  160 (173)
T cd04130         102 NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQK  160 (173)
T ss_pred             CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            25789999999999864321         011111111122233344 89999999874

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd01864 Rab19 Rab19 subfamily

Probab=99.87  E-value=1.3e-21  Score=120.47  Aligned_cols=118  Identities=19%  Similarity=0.274  Sum_probs=88.7

Q ss_pred             CCc-ccCCccCc--eEEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566           3 EVV-HTSPTIGS--NVEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED   77 (126)
Q Consensus         3 ~~~-~~~pTi~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~   77 (126)
                      .+. .+.||++.  ....+.+++  +.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+.... 
T Consensus        27 ~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~-  105 (165)
T cd01864          27 TFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYG-  105 (165)
T ss_pred             CCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-
Confidence            344 56788884  445666655  689999999999999999999999999999999999999999998888775532 


Q ss_pred             CCCCeEEEEEecCCCCCCC--CHHHHHhhcCcCcccCC-ceEEEEeeeeeCC
Q psy6566          78 LSKAAVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQ-QWHIQSCCALTGE  126 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~  126 (126)
                      ..++|+++++||+|+....  ...+...     ..+.. ...++++||++|.
T Consensus       106 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~e~Sa~~~~  152 (165)
T cd01864         106 ASNVVLLLIGNKCDLEEQREVLFEEACT-----LAEKNGMLAVLETSAKESQ  152 (165)
T ss_pred             CCCCcEEEEEECcccccccccCHHHHHH-----HHHHcCCcEEEEEECCCCC
Confidence            2578999999999986532  1122111     11122 2468999999874

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01866 Rab2 Rab2 subfamily

Probab=99.87  E-value=1e-21  Score=121.37  Aligned_cols=115  Identities=25%  Similarity=0.330  Sum_probs=88.5

Q ss_pred             ccCCccCceE--EEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNV--EEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||+|...  ..+.++  .+.+.+|||+|++++..++..+++.++++++|+|++++++++.+..|+..+.+.. .+++
T Consensus        32 ~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~  110 (168)
T cd01866          32 VHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-NSNM  110 (168)
T ss_pred             CCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCC
Confidence            5568888554  445553  4789999999999999999999999999999999999999999999888775543 2679


Q ss_pred             eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+...  ....+....     ....++.++++||++|+
T Consensus       111 pvivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~  152 (168)
T cd01866         111 TIMLIGNKCDLESRREVSYEEGEAF-----AKEHGLIFMETSAKTAS  152 (168)
T ss_pred             cEEEEEECcccccccCCCHHHHHHH-----HHHcCCEEEEEeCCCCC
Confidence            99999999998743  222222222     22345689999999874

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>KOG0076|consensus

Probab=99.87  E-value=1e-22  Score=122.79  Aligned_cols=121  Identities=40%  Similarity=0.654  Sum_probs=107.1

Q ss_pred             ccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEE
Q psy6566           6 HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLI   85 (126)
Q Consensus         6 ~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piil   85 (126)
                      .-.||+|.+..++.+....+.+||.+||+..+++|..|+..||+++|++|+++++.|+.....+++++.+....++|+++
T Consensus        52 ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~  131 (197)
T KOG0076|consen   52 KITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLV  131 (197)
T ss_pred             HeecccceeecceeeccceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhh
Confidence            45699999999999999999999999999999999999999999999999999999999999999999988889999999


Q ss_pred             EEecCCCCCCCCHHHHHhhcCc-CcccCCceEEEEeeeeeCC
Q psy6566          86 YANKQDIKNSMSPVEISNLLDL-TSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        86 v~nK~D~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ..||.|+.+.....++...+++ .....+..++..+||.+|+
T Consensus       132 lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~ge  173 (197)
T KOG0076|consen  132 LANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGE  173 (197)
T ss_pred             hcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcc
Confidence            9999999887666666666653 3335567789999999885

>cd04118 Rab24 Rab24 subfamily

Probab=99.87  E-value=1e-21  Score=123.74  Aligned_cols=119  Identities=18%  Similarity=0.218  Sum_probs=87.6

Q ss_pred             ccCCccCce--EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .|.||+|..  ...+.+++  +.+.+|||+|++++..++..++++++++++|+|++++++++.+..|+..+....  ++.
T Consensus        29 ~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~--~~~  106 (193)
T cd04118          29 PYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE--EHC  106 (193)
T ss_pred             CcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcC--CCC
Confidence            588999944  35566744  677899999999999999999999999999999999999999988887765432  578


Q ss_pred             eEEEEEecCCCCCCC-CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSM-SPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++|+||+|+.... ....+.......+....+.+++++||++|.
T Consensus       107 piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  152 (193)
T cd04118         107 KIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQ  152 (193)
T ss_pred             CEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence            999999999986421 111111111112223345679999999874

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04124 RabL2 RabL2 subfamily

Probab=99.87  E-value=1.4e-21  Score=120.05  Aligned_cols=113  Identities=19%  Similarity=0.277  Sum_probs=85.0

Q ss_pred             ccCCccCceE--EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNV--EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++...  ..+.+  +.+.+.+|||+|++++..+++.+++.++++++|+|++++.++..+..|+..+.+..  ++.
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~  105 (161)
T cd04124          28 QQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR--PEI  105 (161)
T ss_pred             CcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCC
Confidence            4567776443  34444  45688999999999999999999999999999999999999999988887775432  578


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+.... ..+..     .+....+++++++||++|.
T Consensus       106 p~ivv~nK~Dl~~~~-~~~~~-----~~~~~~~~~~~~~Sa~~~~  144 (161)
T cd04124         106 PCIVVANKIDLDPSV-TQKKF-----NFAEKHNLPLYYVSAADGT  144 (161)
T ss_pred             cEEEEEECccCchhH-HHHHH-----HHHHHcCCeEEEEeCCCCC
Confidence            999999999985421 11111     1122335689999999874

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>PLN03118 Rab family protein; Provisional

Probab=99.87  E-value=1.5e-21  Score=124.72  Aligned_cols=121  Identities=26%  Similarity=0.366  Sum_probs=88.6

Q ss_pred             CCcccCCccCceE--EEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCC-CC
Q psy6566           3 EVVHTSPTIGSNV--EEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNH-ED   77 (126)
Q Consensus         3 ~~~~~~pTi~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~-~~   77 (126)
                      .+..+.||++...  ..+.++  .+.+.+|||+|++++..++..+++.++++++|+|+++++++..+..+|...+.. ..
T Consensus        38 ~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~  117 (211)
T PLN03118         38 SVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYST  117 (211)
T ss_pred             CCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcC
Confidence            4557889999655  445553  468899999999999999999999999999999999999999998766554432 22


Q ss_pred             CCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          78 LSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ..+.|+++++||+|+......   ............++.++++||++|.
T Consensus       118 ~~~~~~ilv~NK~Dl~~~~~i---~~~~~~~~~~~~~~~~~e~SAk~~~  163 (211)
T PLN03118        118 NQDCVKMLVGNKVDRESERDV---SREEGMALAKEHGCLFLECSAKTRE  163 (211)
T ss_pred             CCCCCEEEEEECccccccCcc---CHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            356899999999998753211   1111111222345689999999873

>cd04113 Rab4 Rab4 subfamily

Probab=99.87  E-value=1.1e-21  Score=120.24  Aligned_cols=115  Identities=23%  Similarity=0.347  Sum_probs=87.6

Q ss_pred             ccCCccCceE--EEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNV--EEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++...  ..+.++  ...+.+||++|++.+...++.+++.++++++|+|++++.++..+..|+..+.... .+++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~  106 (161)
T cd04113          28 DSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALA-SPNI  106 (161)
T ss_pred             CCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCC
Confidence            6678888544  444553  3689999999999999999999999999999999999999999999887764432 3689


Q ss_pred             eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+...  ....++..     .....+++++++||++|.
T Consensus       107 ~iivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~  148 (161)
T cd04113         107 VVILVGNKSDLADQREVTFLEASR-----FAQENGLLFLETSALTGE  148 (161)
T ss_pred             eEEEEEEchhcchhccCCHHHHHH-----HHHHcCCEEEEEECCCCC
Confidence            99999999998653  22222221     122334789999999874

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04177 RSR1 RSR1 subgroup

Probab=99.87  E-value=9.5e-22  Score=121.49  Aligned_cols=116  Identities=16%  Similarity=0.180  Sum_probs=88.6

Q ss_pred             ccCCccCce-EEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           6 HTSPTIGSN-VEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         6 ~~~pTi~~~-~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      .+.||++.. ...+.+  ..+.+++|||+|+++|..+++.+++.++++++|+|.+++++++....|...+.+.....+.|
T Consensus        29 ~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~p  108 (168)
T cd04177          29 SYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVP  108 (168)
T ss_pred             ccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCC
Confidence            678898833 455666  34789999999999999999999999999999999999999999998887776543346899


Q ss_pred             EEEEEecCCCCCCC--CHHHHHhhcCcCcccCC-ceEEEEeeeeeCC
Q psy6566          83 VLIYANKQDIKNSM--SPVEISNLLDLTSIKKQ-QWHIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~  126 (126)
                      +++++||+|+....  ...+...     ..+.. .++++++||++|.
T Consensus       109 iiiv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~~SA~~~~  150 (168)
T cd04177         109 MVLVGNKADLEDDRQVSREDGVS-----LSQQWGNVPFYETSARKRT  150 (168)
T ss_pred             EEEEEEChhccccCccCHHHHHH-----HHHHcCCceEEEeeCCCCC
Confidence            99999999986532  1111111     11122 3689999999873

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.87  E-value=9.3e-22  Score=123.40  Aligned_cols=122  Identities=15%  Similarity=0.220  Sum_probs=86.4

Q ss_pred             CCc-ccCCccCceE-EEEEEC---CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHH-HHHHHhCCC
Q psy6566           3 EVV-HTSPTIGSNV-EEVIWK---NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKE-ELYKMLNHE   76 (126)
Q Consensus         3 ~~~-~~~pTi~~~~-~~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~-~~~~~~~~~   76 (126)
                      ++. .+.||++... ..+...   .+.+.+|||+|++.+..+++.+++.+|++++|+|++++++|+++.. |+..+....
T Consensus        24 ~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~  103 (187)
T cd04132          24 KFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFC  103 (187)
T ss_pred             cCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC
Confidence            344 6789988553 344443   4689999999999999999999999999999999999999999865 555443322


Q ss_pred             CCCCCeEEEEEecCCCCCCCCH-HHHHhhcCcCcccCCce-EEEEeeeeeCC
Q psy6566          77 DLSKAAVLIYANKQDIKNSMSP-VEISNLLDLTSIKKQQW-HIQSCCALTGE  126 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~~~~-~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~  126 (126)
                        ++.|+++++||+|+...... ..+.......++...++ +++++||++|.
T Consensus       104 --~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  153 (187)
T cd04132         104 --PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTME  153 (187)
T ss_pred             --CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCC
Confidence              57899999999998653210 01111111122223344 79999999874

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.87  E-value=9.6e-22  Score=121.92  Aligned_cols=119  Identities=18%  Similarity=0.262  Sum_probs=85.4

Q ss_pred             ccCCccCceE-EEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHH-HHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNV-EEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKE-ELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~-~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~   81 (126)
                      .|.||++... ..+.++  .+.+.+|||+|++.+..++..++++++++++|+|++++++|+.+.. |+..+.+..  ++.
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~  103 (174)
T smart00174       26 DYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC--PNT  103 (174)
T ss_pred             CCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCC
Confidence            6778887433 445553  3579999999999999999999999999999999999999999864 555554432  689


Q ss_pred             eEEEEEecCCCCCCCC-HHH--------HHhhcCcCcccCCc-eEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMS-PVE--------ISNLLDLTSIKKQQ-WHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~-~~~--------v~~~~~~~~~~~~~-~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+..... ...        +........++..+ .++++|||++|.
T Consensus       104 piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  158 (174)
T smart00174      104 PIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE  158 (174)
T ss_pred             CEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            9999999999865321 011        11111112233344 389999999874

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>PLN03108 Rab family protein; Provisional

Probab=99.86  E-value=4.5e-21  Score=122.46  Aligned_cols=115  Identities=24%  Similarity=0.320  Sum_probs=88.8

Q ss_pred             ccCCccCceE--EEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNV--EEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||+++..  ..+.+.  .+.+.+|||+|++.+..++..+++.++++++|+|++++.+++.+..|+..+.... .++.
T Consensus        34 ~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~-~~~~  112 (210)
T PLN03108         34 VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-NANM  112 (210)
T ss_pred             CCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhc-CCCC
Confidence            5778998654  456663  4678999999999999999999999999999999999999999988887765432 2578


Q ss_pred             eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+...  ...++..     .+++..+++++++||++|.
T Consensus       113 piiiv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~e~Sa~~~~  154 (210)
T PLN03108        113 TIMLIGNKCDLAHRRAVSTEEGE-----QFAKEHGLIFMEASAKTAQ  154 (210)
T ss_pred             cEEEEEECccCccccCCCHHHHH-----HHHHHcCCEEEEEeCCCCC
Confidence            99999999998653  2222222     2223446789999999873

>cd01892 Miro2 Miro2 subfamily

Probab=99.85  E-value=8.1e-21  Score=117.58  Aligned_cols=111  Identities=21%  Similarity=0.191  Sum_probs=84.1

Q ss_pred             cccCCccCce--EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCC
Q psy6566           5 VHTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK   80 (126)
Q Consensus         5 ~~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~   80 (126)
                      .+|.||++..  ...+.+.+  +.+.+||++|++.+..++..+++.+|++++|+|++++.+++.+..|+..+...   .+
T Consensus        32 ~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~---~~  108 (169)
T cd01892          32 NAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFML---GE  108 (169)
T ss_pred             ccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccC---CC
Confidence            4688999954  35566644  68999999999999999999999999999999999999999888877655222   47


Q ss_pred             CeEEEEEecCCCCCCCC-----HHHHHhhcCcCcccCCce-EEEEeeeeeCC
Q psy6566          81 AAVLIYANKQDIKNSMS-----PVEISNLLDLTSIKKQQW-HIQSCCALTGE  126 (126)
Q Consensus        81 ~piilv~nK~D~~~~~~-----~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~  126 (126)
                      +|+++++||+|+.+...     ..++...        .++ .++++||++|+
T Consensus       109 ~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~~~~Sa~~~~  152 (169)
T cd01892         109 IPCLFVAAKADLDEQQQRYEVQPDEFCRK--------LGLPPPLHFSSKLGD  152 (169)
T ss_pred             CeEEEEEEcccccccccccccCHHHHHHH--------cCCCCCEEEEeccCc
Confidence            99999999999864321     1222221        222 35899999874

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01863 Rab18 Rab18 subfamily

Probab=99.85  E-value=1.2e-20  Score=115.64  Aligned_cols=116  Identities=24%  Similarity=0.332  Sum_probs=89.6

Q ss_pred             ccCCccCceE--EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNV--EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++...  ..+.+  +.+.+.+|||+|++.+...+..+++.+|++++|+|++++.+++.+..|+..+.+.....+.
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~  107 (161)
T cd01863          28 DLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDI  107 (161)
T ss_pred             ccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCC
Confidence            4778888654  44455  3478999999999999999999999999999999999999999998887777665445789


Q ss_pred             eEEEEEecCCCCCC-CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS-MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+... ...++...     .....+++++++||++|.
T Consensus       108 ~~~iv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~  148 (161)
T cd01863         108 VKMLVGNKIDKENREVTREEGLK-----FARKHNMLFIETSAKTRD  148 (161)
T ss_pred             cEEEEEECCcccccccCHHHHHH-----HHHHcCCEEEEEecCCCC
Confidence            99999999999742 22222222     122346789999999874

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.85  E-value=2.9e-21  Score=118.96  Aligned_cols=115  Identities=16%  Similarity=0.096  Sum_probs=83.0

Q ss_pred             ccCCccC-ceEEEEEEC--CEEEEEEEcCCCcc-hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC-CCC
Q psy6566           6 HTSPTIG-SNVEEVIWK--NIHFIMWDLGGQQS-LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED-LSK   80 (126)
Q Consensus         6 ~~~pTi~-~~~~~~~~~--~~~~~i~Dt~G~~~-~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~   80 (126)
                      .+.||++ .....+.++  .+.+++|||+|++. +......+++.+|++++|+|++++++++.+..|+..+.+... ..+
T Consensus        27 ~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~  106 (165)
T cd04146          27 EYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDRE  106 (165)
T ss_pred             ccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence            6778886 334555563  45789999999986 345677789999999999999999999999887766654321 357


Q ss_pred             CeEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          81 AAVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        81 ~piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      .|+++++||+|+....  ...+.     ..+.+..+.+++++||++|
T Consensus       107 ~piilv~nK~Dl~~~~~v~~~~~-----~~~~~~~~~~~~e~Sa~~~  148 (165)
T cd04146         107 IPVILVGNKADLLHYRQVSTEEG-----EKLASELGCLFFEVSAAED  148 (165)
T ss_pred             CCEEEEEECCchHHhCccCHHHH-----HHHHHHcCCEEEEeCCCCC
Confidence            9999999999985431  21211     1122233468999999986

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04142 RRP22 RRP22 subfamily

Probab=99.85  E-value=7.9e-21  Score=120.34  Aligned_cols=121  Identities=17%  Similarity=0.153  Sum_probs=84.9

Q ss_pred             CCCc-ccCCccCceE--EEEEECC--EEEEEEEcCCCcchHH--------HHHhhccCCcEEEEEEECCCcccHHHHHHH
Q psy6566           2 NEVV-HTSPTIGSNV--EEVIWKN--IHFIMWDLGGQQSLRA--------AWSTYYTNTEFVILVIDSTDRERISLTKEE   68 (126)
Q Consensus         2 ~~~~-~~~pTi~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~--------~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~   68 (126)
                      ++|. .|.||++...  ..+.+++  +.+++|||+|.+.+..        ....+++.+|++++|||++++++++.+..|
T Consensus        23 ~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~  102 (198)
T cd04142          23 QEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLL  102 (198)
T ss_pred             CCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHH
Confidence            3555 6889998443  4555655  6788999999765321        133457899999999999999999999888


Q ss_pred             HHHHhCCC--CCCCCeEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          69 LYKMLNHE--DLSKAAVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        69 ~~~~~~~~--~~~~~piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +..+.+..  ...++|+++++||+|+....  ..++....    ..+..++++++|||++|.
T Consensus       103 ~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~e~Sak~g~  160 (198)
T cd04142         103 RQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVL----VRKSWKCGYLECSAKYNW  160 (198)
T ss_pred             HHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHH----HHHhcCCcEEEecCCCCC
Confidence            88776543  23679999999999996531  11111111    112346789999999884

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd01861 Rab6 Rab6 subfamily

Probab=99.84  E-value=2e-20  Score=114.55  Aligned_cols=115  Identities=19%  Similarity=0.356  Sum_probs=87.5

Q ss_pred             ccCCccCce--EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++..  ...+.+++  +.+.+|||||++.+..++..+++.++++++|+|++++++++.+..|+..+..... .+.
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~  106 (161)
T cd01861          28 QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERG-NDV  106 (161)
T ss_pred             cCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCC
Confidence            567888754  45555544  6799999999999999999999999999999999999999999998887765432 369


Q ss_pred             eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+...  ...++....     .+..+++++++||++|.
T Consensus       107 ~iilv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~  148 (161)
T cd01861         107 IIVLVGNKTDLSDKRQVSTEEGEKK-----AKELNAMFIETSAKAGH  148 (161)
T ss_pred             EEEEEEEChhccccCccCHHHHHHH-----HHHhCCEEEEEeCCCCC
Confidence            99999999999542  122222211     12334789999999874

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.84  E-value=2.1e-20  Score=114.67  Aligned_cols=115  Identities=23%  Similarity=0.374  Sum_probs=89.2

Q ss_pred             ccCCccCce--EEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSN--VEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||+|..  ...+.+  ..+.+.+||++|++++...+..++++++++++|+|+++++++..+..|+..+..... ++.
T Consensus        29 ~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~  107 (163)
T cd01860          29 NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNAS-PNI  107 (163)
T ss_pred             CCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCC
Confidence            478999843  455666  447899999999999999999999999999999999999999999998888766543 679


Q ss_pred             eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+...  ....+....     ....++.++++||++|.
T Consensus       108 ~iivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~  149 (163)
T cd01860         108 IIALVGNKADLESKRQVSTEEAQEY-----ADENGLLFFETSAKTGE  149 (163)
T ss_pred             eEEEEEECccccccCcCCHHHHHHH-----HHHcCCEEEEEECCCCC
Confidence            99999999998742  222222221     12224679999999874

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04148 RGK RGK subfamily

Probab=99.84  E-value=1.6e-20  Score=120.74  Aligned_cols=117  Identities=13%  Similarity=0.076  Sum_probs=84.6

Q ss_pred             cccCCccC--ceEEEEEE--CCEEEEEEEcCCCcchHHHHHhhcc-CCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCC
Q psy6566           5 VHTSPTIG--SNVEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYT-NTEFVILVIDSTDRERISLTKEELYKMLNHEDLS   79 (126)
Q Consensus         5 ~~~~pTi~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~-~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~   79 (126)
                      ..+.||++  +....+.+  +...+.+|||+|++  ......+++ .+|++++|||++++.+|+.+.+|+..+.+.....
T Consensus        28 ~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~  105 (221)
T cd04148          28 HAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLE  105 (221)
T ss_pred             cCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence            46778885  55667777  55789999999998  333445666 8999999999999999999988887776544346


Q ss_pred             CCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          80 KAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        80 ~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ++|+++|+||+|+.....   +........+...+++++++||++|.
T Consensus       106 ~~piilV~NK~Dl~~~~~---v~~~~~~~~a~~~~~~~~e~SA~~~~  149 (221)
T cd04148         106 DRPIILVGNKSDLARSRE---VSVQEGRACAVVFDCKFIETSAGLQH  149 (221)
T ss_pred             CCCEEEEEEChhccccce---ecHHHHHHHHHHcCCeEEEecCCCCC
Confidence            799999999999865321   11111112223345679999999873

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04135 Tc10 TC10 subfamily

Probab=99.84  E-value=8.2e-21  Score=117.74  Aligned_cols=123  Identities=15%  Similarity=0.179  Sum_probs=85.6

Q ss_pred             CCc-ccCCccC-ceEEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566           3 EVV-HTSPTIG-SNVEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL   78 (126)
Q Consensus         3 ~~~-~~~pTi~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~   78 (126)
                      ++. .+.||++ .....+.+++  +.+.+|||+|++.+...+..+++.++++++|+|++++.+|+++...|...+... .
T Consensus        24 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~  102 (174)
T cd04135          24 AFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-A  102 (174)
T ss_pred             CCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-C
Confidence            344 6788887 3334556644  568899999999999999999999999999999999999998865444444332 3


Q ss_pred             CCCeEEEEEecCCCCCCCCHH---------HHHhhcCcCcccCCc-eEEEEeeeeeCC
Q psy6566          79 SKAAVLIYANKQDIKNSMSPV---------EISNLLDLTSIKKQQ-WHIQSCCALTGE  126 (126)
Q Consensus        79 ~~~piilv~nK~D~~~~~~~~---------~v~~~~~~~~~~~~~-~~~~~~Sa~~~~  126 (126)
                      ++.|+++++||+|+.+.....         .+....+...++..+ .++++|||++|.
T Consensus       103 ~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  160 (174)
T cd04135         103 PNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQK  160 (174)
T ss_pred             CCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCC
Confidence            689999999999986431111         111111112222233 379999999874

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.84  E-value=2.1e-20  Score=114.63  Aligned_cols=115  Identities=23%  Similarity=0.377  Sum_probs=88.7

Q ss_pred             ccCCccCceE--EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNV--EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++...  ..+.+.+  +.+.+||++|++.+...++.+++.+|++++|+|++++.+++.+.+|+..+..... +++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~-~~~  106 (164)
T smart00175       28 QYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYAD-PNV  106 (164)
T ss_pred             CCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCC
Confidence            5668888554  4455544  6899999999999999999999999999999999999999999888877765432 579


Q ss_pred             eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+.+.  ...+.+...     .+..+++++++||++|.
T Consensus       107 pivvv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~  148 (164)
T smart00175      107 VIMLVGNKSDLEDQRQVSREEAEAF-----AEEHGLPFFETSAKTNT  148 (164)
T ss_pred             eEEEEEEchhcccccCCCHHHHHHH-----HHHcCCeEEEEeCCCCC
Confidence            99999999998652  222222221     22345679999999873

Rab GTPases are implicated in vesicle trafficking.

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.83  E-value=1.8e-19  Score=114.16  Aligned_cols=117  Identities=15%  Similarity=0.091  Sum_probs=88.3

Q ss_pred             ccCCccC-ceEEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           6 HTSPTIG-SNVEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         6 ~~~pTi~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      .+.||++ .....+.+++  +.+.+||++|++.+..++..+++.++++++|+|++++.+++.+..|+..+.+.....++|
T Consensus        27 ~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p  106 (198)
T cd04147          27 KYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVP  106 (198)
T ss_pred             cCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc
Confidence            5678876 5556667755  789999999999999999999999999999999999999999988887776654445799


Q ss_pred             EEEEEecCCCCCCCC---HHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          83 VLIYANKQDIKNSMS---PVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +++++||+|+.....   .....+..    ....+..++++||++|.
T Consensus       107 iilv~NK~Dl~~~~~~v~~~~~~~~~----~~~~~~~~~~~Sa~~g~  149 (198)
T cd04147         107 IVVVGNKADSLEEERQVPAKDALSTV----ELDWNCGFVETSAKDNE  149 (198)
T ss_pred             EEEEEEccccccccccccHHHHHHHH----HhhcCCcEEEecCCCCC
Confidence            999999999865211   11111111    01223578999999874

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PLN00023 GTP-binding protein; Provisional

Probab=99.82  E-value=1.8e-19  Score=120.14  Aligned_cols=93  Identities=19%  Similarity=0.352  Sum_probs=76.8

Q ss_pred             CCc-ccCCccCceE--EEEEEC---------------CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHH
Q psy6566           3 EVV-HTSPTIGSNV--EEVIWK---------------NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISL   64 (126)
Q Consensus         3 ~~~-~~~pTi~~~~--~~~~~~---------------~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~   64 (126)
                      .|. .+.||+|...  +.+.++               .+.++||||+|+++|+.++..++++++++|+|+|++++.++++
T Consensus        45 ~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFen  124 (334)
T PLN00023         45 SSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTS  124 (334)
T ss_pred             CcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHH
Confidence            444 6889999654  555552               3679999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCC-----------CCCCeEEEEEecCCCCCC
Q psy6566          65 TKEELYKMLNHED-----------LSKAAVLIYANKQDIKNS   95 (126)
Q Consensus        65 ~~~~~~~~~~~~~-----------~~~~piilv~nK~D~~~~   95 (126)
                      +.+|+..+.....           ..++|+++|+||+||...
T Consensus       125 L~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~  166 (334)
T PLN00023        125 LQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK  166 (334)
T ss_pred             HHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence            9999888765421           135899999999999653

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.82  E-value=1.1e-19  Score=111.34  Aligned_cols=116  Identities=24%  Similarity=0.305  Sum_probs=88.6

Q ss_pred             ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           6 HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         6 ~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      .+.||++... ....+  +.+.+.+|||+|++.+...+..+++.++++++++|++++.++.....|+..+.+.....++|
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p  107 (164)
T cd04139          28 DYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVP  107 (164)
T ss_pred             ccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            6678877443 33444  44789999999999999999999999999999999999999999999888887764446799


Q ss_pred             EEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          83 VLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +++++||+|+...  .........     .+..+++++++||++|+
T Consensus       108 iiiv~NK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~  148 (164)
T cd04139         108 LLLVGNKCDLEDKRQVSSEEAANL-----ARQWGVPYVETSAKTRQ  148 (164)
T ss_pred             EEEEEEccccccccccCHHHHHHH-----HHHhCCeEEEeeCCCCC
Confidence            9999999998652  122211111     12234689999999874

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04114 Rab30 Rab30 subfamily

Probab=99.82  E-value=2.3e-19  Score=110.68  Aligned_cols=116  Identities=22%  Similarity=0.277  Sum_probs=85.0

Q ss_pred             ccCCccC--ceEEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIG--SNVEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++  +....+.+++  +.+.+||++|++.+...+..+++.++++++|+|++++++++.+..|+..+.... ..+.
T Consensus        35 ~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~  113 (169)
T cd04114          35 GQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-NNKV  113 (169)
T ss_pred             CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCC
Confidence            5678887  4445566654  678999999999999999999999999999999999999988888776553332 2468


Q ss_pred             eEEEEEecCCCCCCCCH-HHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSP-VEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+...... .....    .+.+....++++|||++|.
T Consensus       114 ~~i~v~NK~D~~~~~~i~~~~~~----~~~~~~~~~~~~~Sa~~~~  155 (169)
T cd04114         114 ITILVGNKIDLAERREVSQQRAE----EFSDAQDMYYLETSAKESD  155 (169)
T ss_pred             eEEEEEECcccccccccCHHHHH----HHHHHcCCeEEEeeCCCCC
Confidence            99999999998653211 11111    1122234679999999874

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.81  E-value=4.5e-19  Score=110.02  Aligned_cols=122  Identities=18%  Similarity=0.310  Sum_probs=84.4

Q ss_pred             CCc-ccCCccCce-EEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHH-HHHHHhCCCC
Q psy6566           3 EVV-HTSPTIGSN-VEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKE-ELYKMLNHED   77 (126)
Q Consensus         3 ~~~-~~~pTi~~~-~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~-~~~~~~~~~~   77 (126)
                      .+. .|.||++.. ...+.+  +.+.+.+|||+|++.+...+..++++++++++|+|++++++++.+.. |...+.+.  
T Consensus        25 ~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~--  102 (175)
T cd01870          25 QFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--  102 (175)
T ss_pred             CCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--
Confidence            344 688999844 345666  34678999999999999988888999999999999999999988865 44444322  


Q ss_pred             CCCCeEEEEEecCCCCCCCCH-HHHHh--------hcCcCcccC-CceEEEEeeeeeCC
Q psy6566          78 LSKAAVLIYANKQDIKNSMSP-VEISN--------LLDLTSIKK-QQWHIQSCCALTGE  126 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~~~~-~~v~~--------~~~~~~~~~-~~~~~~~~Sa~~~~  126 (126)
                      ..+.|+++++||+|+...... .++..        ..+...+.. ...++++|||++|.
T Consensus       103 ~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  161 (175)
T cd01870         103 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKE  161 (175)
T ss_pred             CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCc
Confidence            257899999999998653211 11110        000111111 23479999999873

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04123 Rab21 Rab21 subfamily

Probab=99.81  E-value=2e-19  Score=109.94  Aligned_cols=115  Identities=24%  Similarity=0.318  Sum_probs=85.7

Q ss_pred             ccCCccCce--EEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSN--VEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++..  ...+.+  ..+.+.+||++|++.+..+++.+++.++++++|+|++++++++.+..|+..+.+... .++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~  106 (162)
T cd04123          28 KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRG-NNI  106 (162)
T ss_pred             CcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCC
Confidence            455677533  344555  346799999999999999999999999999999999999999999888777655432 378


Q ss_pred             eEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+....  ...++...     .+..+.+++++||++|.
T Consensus       107 piiiv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~  148 (162)
T cd04123         107 SLVIVGNKIDLERQRVVSKSEAEEY-----AKSVGAKHFETSAKTGK  148 (162)
T ss_pred             eEEEEEECcccccccCCCHHHHHHH-----HHHcCCEEEEEeCCCCC
Confidence            999999999987532  22222221     12345678999999873

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01862 Rab7 Rab7 subfamily

Probab=99.81  E-value=2.5e-19  Score=110.70  Aligned_cols=117  Identities=17%  Similarity=0.265  Sum_probs=86.0

Q ss_pred             ccCCccCceE--EEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC---C
Q psy6566           6 HTSPTIGSNV--EEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED---L   78 (126)
Q Consensus         6 ~~~pTi~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~---~   78 (126)
                      .+.||++...  ..+.+.  .+.+.+||++|++.+..++..+++.++++++++|++++.+++....|...++....   .
T Consensus        28 ~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (172)
T cd01862          28 QYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDP  107 (172)
T ss_pred             CcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCC
Confidence            5568888543  455553  46788999999999999999999999999999999999999888777766554422   2


Q ss_pred             CCCeEEEEEecCCCCC--CCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          79 SKAAVLIYANKQDIKN--SMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        79 ~~~piilv~nK~D~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .++|+++++||+|+..  ....+.......    .....+++++||++|.
T Consensus       108 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~  153 (172)
T cd01862         108 ENFPFVVLGNKIDLEEKRQVSTKKAQQWCQ----SNGNIPYFETSAKEAI  153 (172)
T ss_pred             CCceEEEEEECcccccccccCHHHHHHHHH----HcCCceEEEEECCCCC
Confidence            4799999999999973  222333222211    1223689999999874

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd01893 Miro1 Miro1 subfamily

Probab=99.81  E-value=3.7e-19  Score=109.72  Aligned_cols=104  Identities=13%  Similarity=0.179  Sum_probs=73.4

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHH
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVE  100 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~  100 (126)
                      +.+.+.+|||+|++.+...+..+++.++++++|+|++++++++.+..+|...++... ++.|+++++||+|+.+......
T Consensus        45 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~  123 (166)
T cd01893          45 ERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAG  123 (166)
T ss_pred             CeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhH
Confidence            668899999999998888888889999999999999999999998654444333322 4789999999999976432111


Q ss_pred             HHhhcCcCcc-cCCc-eEEEEeeeeeCC
Q psy6566         101 ISNLLDLTSI-KKQQ-WHIQSCCALTGE  126 (126)
Q Consensus       101 v~~~~~~~~~-~~~~-~~~~~~Sa~~~~  126 (126)
                      ...... ... +... .++++|||++|.
T Consensus       124 ~~~~~~-~~~~~~~~~~~~~e~Sa~~~~  150 (166)
T cd01893         124 LEEEML-PIMNEFREIETCVECSAKTLI  150 (166)
T ss_pred             HHHHHH-HHHHHHhcccEEEEecccccc
Confidence            111000 000 0111 279999999874

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.81  E-value=1e-18  Score=111.96  Aligned_cols=117  Identities=21%  Similarity=0.331  Sum_probs=91.3

Q ss_pred             CCCc-ccCCccCceEEEEEE----CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566           2 NEVV-HTSPTIGSNVEEVIW----KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE   76 (126)
Q Consensus         2 ~~~~-~~~pTi~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~   76 (126)
                      |.+. .|.||++.......+    +.+.+.+|||+|++.+..++..+++.++++++++|+++..++..+..|+..+.+..
T Consensus        32 ~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~  111 (215)
T PTZ00132         32 GEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC  111 (215)
T ss_pred             CCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC
Confidence            3454 789999977766555    56899999999999999999999999999999999999999999998887776442


Q ss_pred             CCCCCeEEEEEecCCCCCC-CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          77 DLSKAAVLIYANKQDIKNS-MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                        .++|+++++||+|+... ...+..      ......++.++++||++|.
T Consensus       112 --~~~~i~lv~nK~Dl~~~~~~~~~~------~~~~~~~~~~~e~Sa~~~~  154 (215)
T PTZ00132        112 --ENIPIVLVGNKVDVKDRQVKARQI------TFHRKKNLQYYDISAKSNY  154 (215)
T ss_pred             --CCCCEEEEEECccCccccCCHHHH------HHHHHcCCEEEEEeCCCCC
Confidence              57899999999998642 111111      1223345689999999873

>KOG0096|consensus

Probab=99.80  E-value=1.3e-19  Score=110.84  Aligned_cols=117  Identities=20%  Similarity=0.306  Sum_probs=98.2

Q ss_pred             CCCc-ccCCccCceEEEEEE----CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566           2 NEVV-HTSPTIGSNVEEVIW----KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE   76 (126)
Q Consensus         2 ~~~~-~~~pTi~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~   76 (126)
                      |+|+ .|.||+|+......+    +.+++..|||+|+|.+..+...|+-++.+.++|||++.+-...++..|...+.+.+
T Consensus        33 geFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~  112 (216)
T KOG0096|consen   33 GEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR  112 (216)
T ss_pred             ccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHh
Confidence            6788 799999988877777    44999999999999999999999999999999999999999999999999888776


Q ss_pred             CCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          77 DLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                        .++|++++|||.|.....     .....-.+...++++++++||+++
T Consensus       113 --~NiPiv~cGNKvDi~~r~-----~k~k~v~~~rkknl~y~~iSaksn  154 (216)
T KOG0096|consen  113 --ENIPIVLCGNKVDIKARK-----VKAKPVSFHRKKNLQYYEISAKSN  154 (216)
T ss_pred             --cCCCeeeeccceeccccc-----cccccceeeecccceeEEeecccc
Confidence              579999999999987632     122223444567889999999875

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.79  E-value=5.5e-19  Score=110.15  Aligned_cols=116  Identities=22%  Similarity=0.214  Sum_probs=88.8

Q ss_pred             ccCCccCc-eEEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           6 HTSPTIGS-NVEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         6 ~~~pTi~~-~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      .+.||++. ....+.+.+  ..+++|||+|++++...+..++..++++++++|+++..+++.+..++..+++.....+.|
T Consensus        29 ~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  108 (180)
T cd04137          29 SYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVP  108 (180)
T ss_pred             ccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            57788874 355666654  567899999999999999999999999999999999999999999988888765446789


Q ss_pred             EEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          83 VLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +++++||+|+...  ....+....     ....+.+++++||++|.
T Consensus       109 ~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~  149 (180)
T cd04137         109 IVLVGNKSDLHTQRQVSTEEGKEL-----AESWGAAFLESSARENE  149 (180)
T ss_pred             EEEEEEchhhhhcCccCHHHHHHH-----HHHcCCeEEEEeCCCCC
Confidence            9999999998642  121121111     12234679999999873

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>KOG0393|consensus

Probab=99.79  E-value=8.2e-20  Score=113.76  Aligned_cols=122  Identities=20%  Similarity=0.297  Sum_probs=88.4

Q ss_pred             CCCc-ccCCccCce-EEEEEE---CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHhCC
Q psy6566           2 NEVV-HTSPTIGSN-VEEVIW---KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK-EELYKMLNH   75 (126)
Q Consensus         2 ~~~~-~~~pTi~~~-~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~-~~~~~~~~~   75 (126)
                      |.|+ .|.||+--+ ...+.+   +.+.+.+|||+||+.|..+++..+..+|.++++|++.++.+++++. +|+-++.+.
T Consensus        27 ~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~  106 (198)
T KOG0393|consen   27 NAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHH  106 (198)
T ss_pred             CcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhh
Confidence            3455 899999933 344555   3477999999999999999888999999999999999999999974 455555444


Q ss_pred             CCCCCCeEEEEEecCCCCCCC-CHHHH--------HhhcCcCcccCCc-eEEEEeeeeeC
Q psy6566          76 EDLSKAAVLIYANKQDIKNSM-SPVEI--------SNLLDLTSIKKQQ-WHIQSCCALTG  125 (126)
Q Consensus        76 ~~~~~~piilv~nK~D~~~~~-~~~~v--------~~~~~~~~~~~~~-~~~~~~Sa~~~  125 (126)
                      .  ++.|+++||+|.||.... ..+..        ....+...++..+ ..|+||||+++
T Consensus       107 c--p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq  164 (198)
T KOG0393|consen  107 C--PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSALTQ  164 (198)
T ss_pred             C--CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhhhh
Confidence            4  899999999999998432 11111        1111222223333 57999999975

>cd00154 Rab Rab family

Probab=99.79  E-value=5.4e-18  Score=102.97  Aligned_cols=114  Identities=25%  Similarity=0.384  Sum_probs=87.9

Q ss_pred             cCCccCceEEEEEE----CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           7 TSPTIGSNVEEVIW----KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         7 ~~pTi~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      +.||.+.......+    ....+.+||++|++.+...+..+++.++++++|+|++++++++.+..|+..+..... .+.|
T Consensus        29 ~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p  107 (159)
T cd00154          29 YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAP-ENIP  107 (159)
T ss_pred             cCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCc
Confidence            56888866555444    347899999999999999999999999999999999999999999987777765532 5789


Q ss_pred             EEEEEecCCCC--CCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          83 VLIYANKQDIK--NSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +++++||+|+.  .....+++....     ...+.+++++||++|.
T Consensus       108 ~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~  148 (159)
T cd00154         108 IILVGNKIDLEDQRQVSTEEAQQFA-----KENGLLFFETSAKTGE  148 (159)
T ss_pred             EEEEEEcccccccccccHHHHHHHH-----HHcCCeEEEEecCCCC
Confidence            99999999995  233333333222     2246789999999863

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd00876 Ras Ras family

Probab=99.78  E-value=1.9e-18  Score=105.44  Aligned_cols=116  Identities=24%  Similarity=0.237  Sum_probs=88.0

Q ss_pred             ccCCccC-ceEEEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           6 HTSPTIG-SNVEEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         6 ~~~pTi~-~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      .+.||.+ .....+.++  ...+++||++|++.+...+..+++.++++++|+|+++++++.++..++..+.........|
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p  106 (160)
T cd00876          27 EYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIP  106 (160)
T ss_pred             CcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc
Confidence            6677877 333445554  4789999999999999999999999999999999999999999999888887654335799


Q ss_pred             EEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          83 VLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +++++||+|+....  ..+.+...     ....+.+++++||++|.
T Consensus       107 ~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~  147 (160)
T cd00876         107 IVLVGNKCDLENERQVSKEEGKAL-----AKEWGCPFIETSAKDNI  147 (160)
T ss_pred             EEEEEECCcccccceecHHHHHHH-----HHHcCCcEEEeccCCCC
Confidence            99999999987521  11222111     12233679999999873

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd00157 Rho Rho (Ras homology) family

Probab=99.77  E-value=1.1e-18  Score=107.77  Aligned_cols=120  Identities=19%  Similarity=0.282  Sum_probs=82.8

Q ss_pred             ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           6 HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         6 ~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      .+.||+.... ..+..  ..+.+++||++|++.+...+..+++.++++++|+|++++.++......|...+.... .+.|
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p  106 (171)
T cd00157          28 EYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYC-PNVP  106 (171)
T ss_pred             CCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCC
Confidence            5667776332 33444  457899999999999888888889999999999999998888887664444433322 4799


Q ss_pred             EEEEEecCCCCCCCCHH--------HHHhhcCcCcccCCce-EEEEeeeeeCC
Q psy6566          83 VLIYANKQDIKNSMSPV--------EISNLLDLTSIKKQQW-HIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~~~~~~--------~v~~~~~~~~~~~~~~-~~~~~Sa~~~~  126 (126)
                      +++++||+|+.......        .+............+. +++++||++|.
T Consensus       107 ~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  159 (171)
T cd00157         107 IILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE  159 (171)
T ss_pred             EEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence            99999999987643211        0111111122222333 89999999874

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04129 Rho2 Rho2 subfamily

Probab=99.77  E-value=1.2e-18  Score=109.48  Aligned_cols=123  Identities=16%  Similarity=0.257  Sum_probs=83.7

Q ss_pred             CCCc-ccCCccCce-EEEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHH-HHHHHhCCC
Q psy6566           2 NEVV-HTSPTIGSN-VEEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKE-ELYKMLNHE   76 (126)
Q Consensus         2 ~~~~-~~~pTi~~~-~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~-~~~~~~~~~   76 (126)
                      |.+. .+.||++.. ...+.+.  .+.+.+|||+|++.+...++.+++.++++++++|++++++++++.. |+..+.+..
T Consensus        24 ~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~  103 (187)
T cd04129          24 GEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYC  103 (187)
T ss_pred             CCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC
Confidence            3444 567887743 3455664  3668999999999988777778899999999999999999999975 555554332


Q ss_pred             CCCCCeEEEEEecCCCCCCCCH-------HHHHhhcCcCcccCCc-eEEEEeeeeeCC
Q psy6566          77 DLSKAAVLIYANKQDIKNSMSP-------VEISNLLDLTSIKKQQ-WHIQSCCALTGE  126 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~~~~-------~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~  126 (126)
                        +++|+++++||+|+......       ..+.......+++..+ .++++|||++|.
T Consensus       104 --~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  159 (187)
T cd04129         104 --PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE  159 (187)
T ss_pred             --CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence              57999999999998542100       0000011111222233 379999999884

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04171 SelB SelB subfamily

Probab=99.74  E-value=2.3e-17  Score=101.09  Aligned_cols=115  Identities=16%  Similarity=0.095  Sum_probs=72.6

Q ss_pred             CCccCceEEEEEEC-CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEE
Q psy6566           8 SPTIGSNVEEVIWK-NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIY   86 (126)
Q Consensus         8 ~pTi~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv   86 (126)
                      .+|++.....+.+. +..+.+|||||++++......+++++|++++|+|+++.. .......+..+ +..  ...|++++
T Consensus        35 ~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~-~~~~~~~~~~~-~~~--~~~~~ilv  110 (164)
T cd04171          35 GITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGI-MPQTREHLEIL-ELL--GIKRGLVV  110 (164)
T ss_pred             CceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCc-cHhHHHHHHHH-HHh--CCCcEEEE
Confidence            34666666666775 789999999999999877777889999999999987621 11122222211 111  22489999


Q ss_pred             EecCCCCCCCCHHHHHhhcCcCccc--CCceEEEEeeeeeCC
Q psy6566          87 ANKQDIKNSMSPVEISNLLDLTSIK--KQQWHIQSCCALTGE  126 (126)
Q Consensus        87 ~nK~D~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~Sa~~~~  126 (126)
                      +||+|+.+.................  ....+++++||++|+
T Consensus       111 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  152 (164)
T cd04171         111 LTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGE  152 (164)
T ss_pred             EECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCc
Confidence            9999997632111111111111111  135689999999874

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>KOG4252|consensus

Probab=99.74  E-value=2.2e-20  Score=113.58  Aligned_cols=118  Identities=19%  Similarity=0.270  Sum_probs=91.0

Q ss_pred             CCCc-ccCCccCceE--EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566           2 NEVV-HTSPTIGSNV--EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE   76 (126)
Q Consensus         2 ~~~~-~~~pTi~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~   76 (126)
                      |-|. .|.-|||+..  +.+++  +.+...+|||+||+.|..+-..|+++|.+.++||..+++.||+....|..++....
T Consensus        43 gifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~  122 (246)
T KOG4252|consen   43 GIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKET  122 (246)
T ss_pred             cccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHh
Confidence            4566 8899999554  55555  77889999999999999999999999999999999999999999999998886654


Q ss_pred             CCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeee
Q psy6566          77 DLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALT  124 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  124 (126)
                        ..+|.+++-||+|+.+..   .+...+.+..++..+..++.+|+++
T Consensus       123 --~~IPtV~vqNKIDlveds---~~~~~evE~lak~l~~RlyRtSvke  165 (246)
T KOG4252|consen  123 --ERIPTVFVQNKIDLVEDS---QMDKGEVEGLAKKLHKRLYRTSVKE  165 (246)
T ss_pred             --ccCCeEEeeccchhhHhh---hcchHHHHHHHHHhhhhhhhhhhhh
Confidence              689999999999997631   1111111222233444567777764

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.73  E-value=7.8e-17  Score=98.48  Aligned_cols=111  Identities=18%  Similarity=0.270  Sum_probs=89.1

Q ss_pred             CccCceEEEEEE-CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEE
Q psy6566           9 PTIGSNVEEVIW-KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYA   87 (126)
Q Consensus         9 pTi~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~   87 (126)
                      +|+...+..+.+ ++..+.++|||||++|+-+|+.+.+++.+.++++|.+.+..+ .....+..+...   ..+|+++.+
T Consensus        53 tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~---~~ip~vVa~  128 (187)
T COG2229          53 TTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR---NPIPVVVAI  128 (187)
T ss_pred             eeEeecccceEEcCcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc---cCCCEEEEe
Confidence            567777777888 559999999999999999999999999999999999998887 444434444333   239999999


Q ss_pred             ecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          88 NKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        88 nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ||+|+....+.+++.+.+....   ..+++++.+|.+++
T Consensus       129 NK~DL~~a~ppe~i~e~l~~~~---~~~~vi~~~a~e~~  164 (187)
T COG2229         129 NKQDLFDALPPEKIREALKLEL---LSVPVIEIDATEGE  164 (187)
T ss_pred             eccccCCCCCHHHHHHHHHhcc---CCCceeeeecccch
Confidence            9999999888888887776442   45678898888653

>KOG3883|consensus

Probab=99.71  E-value=1e-16  Score=95.39  Aligned_cols=116  Identities=19%  Similarity=0.221  Sum_probs=92.8

Q ss_pred             ccCCccC-ceEEEEEE---CCEEEEEEEcCCCcch-HHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCC
Q psy6566           6 HTSPTIG-SNVEEVIW---KNIHFIMWDLGGQQSL-RAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK   80 (126)
Q Consensus         6 ~~~pTi~-~~~~~~~~---~~~~~~i~Dt~G~~~~-~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~   80 (126)
                      ++.||++ ++...+.-   ....+.++||+|.... ..+-.+|+.-+|++++|++..+++||+.+..+-+.+.+....+.
T Consensus        39 e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKE  118 (198)
T KOG3883|consen   39 ELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKE  118 (198)
T ss_pred             ccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhcccccc
Confidence            7889999 88888877   3357999999998877 55778899999999999999999999988765555655555578


Q ss_pred             CeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeee
Q psy6566          81 AAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALT  124 (126)
Q Consensus        81 ~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  124 (126)
                      +|+++++||+|+.++   .++....+..|++..++..++++|++
T Consensus       119 vpiVVLaN~rdr~~p---~~vd~d~A~~Wa~rEkvkl~eVta~d  159 (198)
T KOG3883|consen  119 VPIVVLANKRDRAEP---REVDMDVAQIWAKREKVKLWEVTAMD  159 (198)
T ss_pred             ccEEEEechhhcccc---hhcCHHHHHHHHhhhheeEEEEEecc
Confidence            999999999999764   33444445567777788889998875

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.70  E-value=3.8e-16  Score=98.60  Aligned_cols=105  Identities=18%  Similarity=0.225  Sum_probs=72.2

Q ss_pred             EEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCC
Q psy6566          17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSM   96 (126)
Q Consensus        17 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~   96 (126)
                      .+..++..+.+|||||++.|...+..+++.+|++++|+|+++. .+.....++.....    .++|+++++||+|+....
T Consensus        59 ~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~  133 (194)
T cd01891          59 AVTYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPDAR  133 (194)
T ss_pred             EEEECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCC-ccHHHHHHHHHHHH----cCCCEEEEEECCCCCCCC
Confidence            3444889999999999999999999999999999999999863 23333333443322    468999999999996532


Q ss_pred             CH---HHHHhhcC-c-CcccCCceEEEEeeeeeCC
Q psy6566          97 SP---VEISNLLD-L-TSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        97 ~~---~~v~~~~~-~-~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ..   .++...+. . ......+++++++||++|.
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~  168 (194)
T cd01891         134 PEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGW  168 (194)
T ss_pred             HHHHHHHHHHHHHHhCCccccCccCEEEeehhccc
Confidence            21   11222110 0 0112346789999999874

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>KOG0077|consensus

Probab=99.70  E-value=1.5e-16  Score=95.77  Aligned_cols=122  Identities=28%  Similarity=0.484  Sum_probs=102.1

Q ss_pred             CcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE
Q psy6566           4 VVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV   83 (126)
Q Consensus         4 ~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi   83 (126)
                      ..++.||.......+.+++++++..|.+|+...+..|..|+..++++++.+|+.+.+.|.+++..+..++......+.|+
T Consensus        45 l~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~  124 (193)
T KOG0077|consen   45 LGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPF  124 (193)
T ss_pred             ccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcc
Confidence            35899999999999999999999999999999999999999999999999999999999999999999998888889999


Q ss_pred             EEEEecCCCCCCCCHHHHHhhcC------------cCcccCCceEEEEeeeeeC
Q psy6566          84 LIYANKQDIKNSMSPVEISNLLD------------LTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        84 ilv~nK~D~~~~~~~~~v~~~~~------------~~~~~~~~~~~~~~Sa~~~  125 (126)
                      ++.+||+|.+...+.++......            +.-...+.+..+.||...+
T Consensus       125 lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~  178 (193)
T KOG0077|consen  125 LILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRK  178 (193)
T ss_pred             eeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEcc
Confidence            99999999998765554322221            1112335567888887643

>cd01890 LepA LepA subfamily

Probab=99.70  E-value=3.7e-16  Score=97.26  Aligned_cols=99  Identities=15%  Similarity=0.137  Sum_probs=68.9

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHH
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVE  100 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~  100 (126)
                      ++..+.+|||||++.+...+..+++.+|++++|+|+++..++.....|. ....    .++|+++++||+|+.+.. ...
T Consensus        65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~-~~~~----~~~~iiiv~NK~Dl~~~~-~~~  138 (179)
T cd01890          65 QEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFY-LALE----NNLEIIPVINKIDLPSAD-PER  138 (179)
T ss_pred             CcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHH-HHHH----cCCCEEEEEECCCCCcCC-HHH
Confidence            4678999999999999999999999999999999998876665554433 2222    468999999999986532 111


Q ss_pred             HHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566         101 ISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus       101 v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ....+... .......++++||++|+
T Consensus       139 ~~~~~~~~-~~~~~~~~~~~Sa~~g~  163 (179)
T cd01890         139 VKQQIEDV-LGLDPSEAILVSAKTGL  163 (179)
T ss_pred             HHHHHHHH-hCCCcccEEEeeccCCC
Confidence            11111110 01112358999999884

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.69  E-value=4.8e-16  Score=98.87  Aligned_cols=94  Identities=29%  Similarity=0.366  Sum_probs=72.0

Q ss_pred             CCcccCCccCceEEEEEE----CCEEEEEEEcCCCcchHHHHHhhccCC-cEEEEEEECCCc-ccHHHHHHHHHHHhCCC
Q psy6566           3 EVVHTSPTIGSNVEEVIW----KNIHFIMWDLGGQQSLRAAWSTYYTNT-EFVILVIDSTDR-ERISLTKEELYKMLNHE   76 (126)
Q Consensus         3 ~~~~~~pTi~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~-~~~l~v~d~~~~-~~~~~~~~~~~~~~~~~   76 (126)
                      .+..+.|++..+...+..    ++..+.+||+||+++++..+..+++.+ +++|||+|+++. .++..+..++..++...
T Consensus        24 ~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~  103 (203)
T cd04105          24 KYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDL  103 (203)
T ss_pred             CCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHH
Confidence            344455555555544444    368899999999999999999999998 999999999987 67788777777665432


Q ss_pred             C--CCCCeEEEEEecCCCCCCC
Q psy6566          77 D--LSKAAVLIYANKQDIKNSM   96 (126)
Q Consensus        77 ~--~~~~piilv~nK~D~~~~~   96 (126)
                      .  .+++|+++++||+|+....
T Consensus       104 ~~~~~~~pvliv~NK~Dl~~a~  125 (203)
T cd04105         104 EKVKNKIPVLIACNKQDLFTAK  125 (203)
T ss_pred             hhccCCCCEEEEecchhhcccC
Confidence            1  1579999999999987643

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.68  E-value=8.8e-16  Score=94.59  Aligned_cols=111  Identities=15%  Similarity=0.088  Sum_probs=71.2

Q ss_pred             CccCceEEEEEECCEEEEEEEcCCCcchH---------HHHHhhccCCcEEEEEEECCCccc--HHHHHHHHHHHhCCCC
Q psy6566           9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLR---------AAWSTYYTNTEFVILVIDSTDRER--ISLTKEELYKMLNHED   77 (126)
Q Consensus         9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~~~~~~~~l~v~d~~~~~~--~~~~~~~~~~~~~~~~   77 (126)
                      +|.+.....+..++..+.+|||||+....         .........++++++|+|+++..+  ++....|+..+.+.. 
T Consensus        33 ~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-  111 (168)
T cd01897          33 TTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-  111 (168)
T ss_pred             cccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-
Confidence            45666666666678999999999984210         111111234689999999988654  355555565553321 


Q ss_pred             CCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          78 LSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                       .+.|+++++||+|+.......+.     .........++++|||++|.
T Consensus       112 -~~~pvilv~NK~Dl~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~  154 (168)
T cd01897         112 -KNKPVIVVLNKIDLLTFEDLSEI-----EEEEELEGEEVLKISTLTEE  154 (168)
T ss_pred             -CcCCeEEEEEccccCchhhHHHH-----HHhhhhccCceEEEEecccC
Confidence             47899999999999764222211     11223345689999999884

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.67  E-value=9.9e-16  Score=103.71  Aligned_cols=114  Identities=17%  Similarity=0.179  Sum_probs=79.2

Q ss_pred             CccCceEEEEEE-CCEEEEEEEcCCCcc-------hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC-CCC
Q psy6566           9 PTIGSNVEEVIW-KNIHFIMWDLGGQQS-------LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE-DLS   79 (126)
Q Consensus         9 pTi~~~~~~~~~-~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~-~~~   79 (126)
                      +|+......+.+ +...+.+||+||...       ....+..+++.++++++|+|+++.+++++...|..++.... .+.
T Consensus       191 TT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~  270 (335)
T PRK12299        191 TTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELA  270 (335)
T ss_pred             ceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcc
Confidence            577777777777 667899999999732       33344556788999999999998878888877776664432 235


Q ss_pred             CCeEEEEEecCCCCCCCCHH-HHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          80 KAAVLIYANKQDIKNSMSPV-EISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        80 ~~piilv~nK~D~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +.|+++++||+|+....... .....    +....+.+++++||++++
T Consensus       271 ~kp~IIV~NKiDL~~~~~~~~~~~~~----~~~~~~~~i~~iSAktg~  314 (335)
T PRK12299        271 DKPRILVLNKIDLLDEEEEREKRAAL----ELAALGGPVFLISAVTGE  314 (335)
T ss_pred             cCCeEEEEECcccCCchhHHHHHHHH----HHHhcCCCEEEEEcCCCC
Confidence            78999999999987542111 11111    112234679999999874

>smart00275 G_alpha G protein alpha subunit

Probab=99.67  E-value=9.3e-16  Score=104.18  Aligned_cols=89  Identities=24%  Similarity=0.458  Sum_probs=80.8

Q ss_pred             ccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCC----------cccHHHHHHHHHHHhCC
Q psy6566           6 HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD----------RERISLTKEELYKMLNH   75 (126)
Q Consensus         6 ~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~----------~~~~~~~~~~~~~~~~~   75 (126)
                      -..||+|+....+.+++..+.+||++|+...+..|.+++.++++++||+|+++          .+.+.++...+..++..
T Consensus       167 ~r~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~  246 (342)
T smart00275      167 SRVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNS  246 (342)
T ss_pred             eeCCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcC
Confidence            35699999999999999999999999999999999999999999999999986          35788888899999988


Q ss_pred             CCCCCCeEEEEEecCCCCC
Q psy6566          76 EDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        76 ~~~~~~piilv~nK~D~~~   94 (126)
                      +...+.|+++++||.|+..
T Consensus       247 ~~~~~~piil~~NK~D~~~  265 (342)
T smart00275      247 RWFANTSIILFLNKIDLFE  265 (342)
T ss_pred             ccccCCcEEEEEecHHhHH
Confidence            8888999999999999653

Subunit of G proteins that contains the guanine nucleotide binding site

>cd00066 G-alpha G protein alpha subunit

Probab=99.66  E-value=8.6e-16  Score=103.52  Aligned_cols=89  Identities=22%  Similarity=0.431  Sum_probs=80.3

Q ss_pred             ccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCc----------ccHHHHHHHHHHHhCC
Q psy6566           6 HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR----------ERISLTKEELYKMLNH   75 (126)
Q Consensus         6 ~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~----------~~~~~~~~~~~~~~~~   75 (126)
                      -..||+|+....+.+++..+.+||++||+..+..|.+++.++++++||+|+++-          +.+.+....+..++..
T Consensus       144 ~r~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~  223 (317)
T cd00066         144 ARVKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNS  223 (317)
T ss_pred             eecccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhC
Confidence            346899999999999999999999999999999999999999999999999863          6788888889999888


Q ss_pred             CCCCCCeEEEEEecCCCCC
Q psy6566          76 EDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        76 ~~~~~~piilv~nK~D~~~   94 (126)
                      +...+.|+++++||+|+..
T Consensus       224 ~~~~~~pill~~NK~D~f~  242 (317)
T cd00066         224 RWFANTSIILFLNKKDLFE  242 (317)
T ss_pred             ccccCCCEEEEccChHHHH
Confidence            7778999999999999643

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>cd01898 Obg Obg subfamily

Probab=99.66  E-value=1.9e-15  Score=93.22  Aligned_cols=115  Identities=19%  Similarity=0.144  Sum_probs=73.0

Q ss_pred             CccCceEEEEEECCE-EEEEEEcCCCcc----h---HHHHHhhccCCcEEEEEEECCCc-ccHHHHHHHHHHHhCCC-CC
Q psy6566           9 PTIGSNVEEVIWKNI-HFIMWDLGGQQS----L---RAAWSTYYTNTEFVILVIDSTDR-ERISLTKEELYKMLNHE-DL   78 (126)
Q Consensus         9 pTi~~~~~~~~~~~~-~~~i~Dt~G~~~----~---~~~~~~~~~~~~~~l~v~d~~~~-~~~~~~~~~~~~~~~~~-~~   78 (126)
                      +|.......+.+++. .+.+|||||+..    .   ...+...++.++++++|+|++++ ++++....|...+.... ..
T Consensus        33 ~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~  112 (170)
T cd01898          33 TTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPEL  112 (170)
T ss_pred             cccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccc
Confidence            344444444556554 999999999632    1   12222235579999999999998 78888877766654432 22


Q ss_pred             CCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          79 SKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        79 ~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .+.|+++++||+|+..............   ......+++++||++|.
T Consensus       113 ~~~p~ivv~NK~Dl~~~~~~~~~~~~~~---~~~~~~~~~~~Sa~~~~  157 (170)
T cd01898         113 LEKPRIVVLNKIDLLDEEELFELLKELL---KELWGKPVFPISALTGE  157 (170)
T ss_pred             cccccEEEEEchhcCCchhhHHHHHHHH---hhCCCCCEEEEecCCCC
Confidence            4789999999999865432222111111   11134578999999873

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.65  E-value=3.5e-15  Score=95.66  Aligned_cols=90  Identities=29%  Similarity=0.405  Sum_probs=69.9

Q ss_pred             ccCCccCceEEEEEE--C--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNVEEVIW--K--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~~~~~~--~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++........  .  .+++.+|||+|+++++..++.|+.+++++++++|.+...++.+....|...+......+.
T Consensus        33 ~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~  112 (219)
T COG1100          33 GYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDV  112 (219)
T ss_pred             cCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCc
Confidence            577898854433333  2  688999999999999999999999999999999999866566665555544444332469


Q ss_pred             eEEEEEecCCCCCC
Q psy6566          82 AVLIYANKQDIKNS   95 (126)
Q Consensus        82 piilv~nK~D~~~~   95 (126)
                      |+++++||+|+...
T Consensus       113 ~iilv~nK~Dl~~~  126 (219)
T COG1100         113 PILLVGNKIDLFDE  126 (219)
T ss_pred             eEEEEecccccccc
Confidence            99999999999874

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.62  E-value=7.3e-15  Score=88.06  Aligned_cols=118  Identities=26%  Similarity=0.331  Sum_probs=83.9

Q ss_pred             ccCCccCceEEEEEEC----CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNVEEVIWK----NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~~~~~~~----~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      ...||. .........    +..+.+||++|+..+...+..+++.++++++|+|++++.++.....++..........+.
T Consensus        25 ~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (157)
T cd00882          25 EYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENI  103 (157)
T ss_pred             ccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCC
Confidence            445665 555555553    788999999999998888888999999999999999988888887763333333334689


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+..........  ...........+++++||+++.
T Consensus       104 ~~ivv~nk~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~  146 (157)
T cd00882         104 PIILVGNKIDLPEERVVSEEE--LAEQLAKELGVPYFETSAKTGE  146 (157)
T ss_pred             cEEEEEeccccccccchHHHH--HHHHHHhhcCCcEEEEecCCCC
Confidence            999999999987643322211  0011112345689999998763

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.62  E-value=4.9e-15  Score=91.73  Aligned_cols=116  Identities=15%  Similarity=0.081  Sum_probs=75.9

Q ss_pred             CCccCceEEEEEEC-CEEEEEEEcCCCcch----HH---HHHhhccCCcEEEEEEECCCc------ccHHHHHHHHHHHh
Q psy6566           8 SPTIGSNVEEVIWK-NIHFIMWDLGGQQSL----RA---AWSTYYTNTEFVILVIDSTDR------ERISLTKEELYKML   73 (126)
Q Consensus         8 ~pTi~~~~~~~~~~-~~~~~i~Dt~G~~~~----~~---~~~~~~~~~~~~l~v~d~~~~------~~~~~~~~~~~~~~   73 (126)
                      .+|++.....+.++ +..+.+|||||....    +.   ....+++.++++++|+|++++      .++.+...+...+.
T Consensus        28 ~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  107 (176)
T cd01881          28 FTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELK  107 (176)
T ss_pred             ceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHH
Confidence            35666666667777 899999999996321    11   223457789999999999987      46776666666554


Q ss_pred             CCCC------CCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          74 NHED------LSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        74 ~~~~------~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ....      ..+.|+++++||+|+..........   ...........++++||+++.
T Consensus       108 ~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~  163 (176)
T cd01881         108 LYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL---VRELALEEGAEVVPISAKTEE  163 (176)
T ss_pred             HhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH---HHHHhcCCCCCEEEEehhhhc
Confidence            3321      1468999999999997542222211   111122334569999998763

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd01878 HflX HflX subfamily

Probab=99.61  E-value=9.6e-15  Score=92.82  Aligned_cols=110  Identities=14%  Similarity=0.171  Sum_probs=74.0

Q ss_pred             cCCccCceEEEEEECC-EEEEEEEcCCCcc---------hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566           7 TSPTIGSNVEEVIWKN-IHFIMWDLGGQQS---------LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE   76 (126)
Q Consensus         7 ~~pTi~~~~~~~~~~~-~~~~i~Dt~G~~~---------~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~   76 (126)
                      +.||++.....+.+.+ ..+.+|||+|...         +...+ ..+..+|++++|+|++++.++.....+.. +++..
T Consensus        72 ~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~-~l~~~  149 (204)
T cd01878          72 LFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEK-VLKEL  149 (204)
T ss_pred             cceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHH-HHHHc
Confidence            4577777666777744 4899999999722         22222 23678999999999998877776654433 33333


Q ss_pred             CCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          77 DLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ...++|+++|+||+|+.....   ..     ........+++++||++|.
T Consensus       150 ~~~~~~viiV~NK~Dl~~~~~---~~-----~~~~~~~~~~~~~Sa~~~~  191 (204)
T cd01878         150 GAEDIPMILVLNKIDLLDDEE---LE-----ERLEAGRPDAVFISAKTGE  191 (204)
T ss_pred             CcCCCCEEEEEEccccCChHH---HH-----HHhhcCCCceEEEEcCCCC
Confidence            335789999999999976421   11     1112334579999999874

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.61  E-value=5e-15  Score=90.22  Aligned_cols=106  Identities=17%  Similarity=0.119  Sum_probs=70.8

Q ss_pred             ccCceEEEEEECCEEEEEEEcCCCcchHH------HHHhhcc--CCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566          10 TIGSNVEEVIWKNIHFIMWDLGGQQSLRA------AWSTYYT--NTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus        10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~~--~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      |+......+.+++..+.+|||||++.+..      ++..++.  .++++++|+|+++++...   .++..+.+    .++
T Consensus        30 t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~---~~~~~~~~----~~~  102 (158)
T cd01879          30 TVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNL---YLTLQLLE----LGL  102 (158)
T ss_pred             ccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHH---HHHHHHHH----cCC
Confidence            45566677777888999999999977653      3555664  999999999998754432   33333322    368


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+...........    ...+..+.+++++||++|+
T Consensus       103 ~~iiv~NK~Dl~~~~~~~~~~~----~~~~~~~~~~~~iSa~~~~  143 (158)
T cd01879         103 PVVVALNMIDEAEKRGIKIDLD----KLSELLGVPVVPTSARKGE  143 (158)
T ss_pred             CEEEEEehhhhcccccchhhHH----HHHHhhCCCeEEEEccCCC
Confidence            9999999999965321111111    1112234679999999874

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>KOG1673|consensus

Probab=99.60  E-value=1.2e-15  Score=91.04  Aligned_cols=117  Identities=20%  Similarity=0.289  Sum_probs=87.0

Q ss_pred             ccCCccCceE--EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNV--EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.-|.|++.  +++.+  ..+.+.+||.+|++++..+.+...+.+-+++||||.+++.++..+..|..+.-..+. ..+
T Consensus        48 ~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~Nk-tAi  126 (205)
T KOG1673|consen   48 EYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNK-TAI  126 (205)
T ss_pred             HHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCC-ccc
Confidence            4556777554  66666  447899999999999999999999999999999999999999999999988865543 456


Q ss_pred             eEEEEEecCCCCCCCCHH--HHHhhcCcCcccCCceEEEEeeeee
Q psy6566          82 AVLIYANKQDIKNSMSPV--EISNLLDLTSIKKQQWHIQSCCALT  124 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~Sa~~  124 (126)
                      | +++|+|.|+--....+  +-....+..+++..+.+.+.||+..
T Consensus       127 P-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~  170 (205)
T KOG1673|consen  127 P-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSH  170 (205)
T ss_pred             e-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccc
Confidence            7 6799999864322222  1112223345556677888888864

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.60  E-value=2.1e-14  Score=97.92  Aligned_cols=109  Identities=19%  Similarity=0.199  Sum_probs=75.3

Q ss_pred             cCCccCceEEEEEE-CCEEEEEEEcCCC---------cchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566           7 TSPTIGSNVEEVIW-KNIHFIMWDLGGQ---------QSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE   76 (126)
Q Consensus         7 ~~pTi~~~~~~~~~-~~~~~~i~Dt~G~---------~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~   76 (126)
                      +-+|.++....+.+ ++..+.+|||+|.         +.|+..+. .++.||++++|+|++++.+.+....+. ..++..
T Consensus       220 ~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle-~~~~ADlil~VvD~s~~~~~~~~~~~~-~~L~~l  297 (351)
T TIGR03156       220 LFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLE-EVREADLLLHVVDASDPDREEQIEAVE-KVLEEL  297 (351)
T ss_pred             CccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCchHHHHHHHH-HHHHHh
Confidence            45788888888888 6789999999997         23443333 478999999999999887776654432 333332


Q ss_pred             CCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          77 DLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ...+.|+++|+||+|+...   ..+.....      ...+++.+||++|.
T Consensus       298 ~~~~~piIlV~NK~Dl~~~---~~v~~~~~------~~~~~i~iSAktg~  338 (351)
T TIGR03156       298 GAEDIPQLLVYNKIDLLDE---PRIERLEE------GYPEAVFVSAKTGE  338 (351)
T ss_pred             ccCCCCEEEEEEeecCCCh---HhHHHHHh------CCCCEEEEEccCCC
Confidence            2357899999999998653   22221111      11257999999874

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.60  E-value=1.3e-14  Score=93.24  Aligned_cols=116  Identities=20%  Similarity=0.221  Sum_probs=75.3

Q ss_pred             CCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcc------cHHHHHHHHHHHhCCCCCCCC
Q psy6566           8 SPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE------RISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         8 ~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~------~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      ..|+......+..++..+.+|||||+..|...+...++.+|++++|+|+++..      ........+... ..  ....
T Consensus        62 g~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~  138 (219)
T cd01883          62 GVTIDVGLAKFETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RT--LGVK  138 (219)
T ss_pred             ccCeecceEEEeeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HH--cCCC
Confidence            34555666677779999999999999888877777788999999999998742      111222222222 21  1336


Q ss_pred             eEEEEEecCCCCCC-CC---HHHHHhhc----CcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS-MS---PVEISNLL----DLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~-~~---~~~v~~~~----~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+... ..   ..++...+    .........++++.+||++|+
T Consensus       139 ~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~  191 (219)
T cd01883         139 QLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGD  191 (219)
T ss_pred             eEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCC
Confidence            89999999999742 11   12222221    111112346789999999884

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.60  E-value=2.2e-14  Score=88.21  Aligned_cols=112  Identities=22%  Similarity=0.160  Sum_probs=72.8

Q ss_pred             CccCceEEEEEEC---CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEE
Q psy6566           9 PTIGSNVEEVIWK---NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLI   85 (126)
Q Consensus         9 pTi~~~~~~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piil   85 (126)
                      +|.......+..+   +..+.+|||||++.+..++..+++.+|++++|+|+++..... ....+..+ +.   .+.|+++
T Consensus        33 ~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~-~~~~~~~~-~~---~~~p~iv  107 (168)
T cd01887          33 ITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQ-TIEAIKLA-KA---ANVPFIV  107 (168)
T ss_pred             eEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHH-HHHHHHHH-HH---cCCCEEE
Confidence            3444444455554   788999999999999999998999999999999998743221 11222222 22   4689999


Q ss_pred             EEecCCCCCCCCHHHHHhhc---CcCc--ccCCceEEEEeeeeeCC
Q psy6566          86 YANKQDIKNSMSPVEISNLL---DLTS--IKKQQWHIQSCCALTGE  126 (126)
Q Consensus        86 v~nK~D~~~~~~~~~v~~~~---~~~~--~~~~~~~~~~~Sa~~~~  126 (126)
                      ++||+|+.... ...+...+   ....  .....++++++||++|+
T Consensus       108 v~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  152 (168)
T cd01887         108 ALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGE  152 (168)
T ss_pred             EEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCC
Confidence            99999987532 12221111   1110  11235689999999874

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.60  E-value=1.6e-14  Score=97.74  Aligned_cols=114  Identities=20%  Similarity=0.203  Sum_probs=75.9

Q ss_pred             CccCceEEEEEECC-EEEEEEEcCCCcc-------hHHHHHhhccCCcEEEEEEECCCc---ccHHHHHHHHHHHhCC-C
Q psy6566           9 PTIGSNVEEVIWKN-IHFIMWDLGGQQS-------LRAAWSTYYTNTEFVILVIDSTDR---ERISLTKEELYKMLNH-E   76 (126)
Q Consensus         9 pTi~~~~~~~~~~~-~~~~i~Dt~G~~~-------~~~~~~~~~~~~~~~l~v~d~~~~---~~~~~~~~~~~~~~~~-~   76 (126)
                      +|...+...+.+.+ ..+.+|||||...       ....+..+++.++++++|+|+++.   +++++...|..++... .
T Consensus       190 TT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~  269 (329)
T TIGR02729       190 TTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSP  269 (329)
T ss_pred             CccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhh
Confidence            45555666667755 8999999999742       233344456789999999999876   5667766665555332 2


Q ss_pred             CCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          77 DLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ...+.|+++++||+|+.......++.+.+.    +..+.+++++||++++
T Consensus       270 ~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~----~~~~~~vi~iSAktg~  315 (329)
T TIGR02729       270 ELAEKPRIVVLNKIDLLDEEELAELLKELK----KALGKPVFPISALTGE  315 (329)
T ss_pred             hhccCCEEEEEeCccCCChHHHHHHHHHHH----HHcCCcEEEEEccCCc
Confidence            235789999999999976422222222221    2224579999999874

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.59  E-value=2.1e-14  Score=101.49  Aligned_cols=109  Identities=13%  Similarity=0.075  Sum_probs=71.7

Q ss_pred             ceEEEEEECCEEEEEEEcCCC----------cchHHHH-HhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566          13 SNVEEVIWKNIHFIMWDLGGQ----------QSLRAAW-STYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus        13 ~~~~~~~~~~~~~~i~Dt~G~----------~~~~~~~-~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .....+.+++..+.+|||||.          +.+..+. ..+++.+|++++|+|+++..++.+.. ++..+..    .+.
T Consensus       249 ~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~  323 (472)
T PRK03003        249 PVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGR  323 (472)
T ss_pred             cceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCC
Confidence            444566678888999999995          3333332 34578999999999999887777664 3443332    468


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+.+......+..............+++++||++|.
T Consensus       324 piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~  368 (472)
T PRK03003        324 ALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGR  368 (472)
T ss_pred             CEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCC
Confidence            999999999997532222222222212222233578999999884

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.59  E-value=3e-14  Score=86.19  Aligned_cols=116  Identities=21%  Similarity=0.267  Sum_probs=80.3

Q ss_pred             ccCCccCceEEE--EEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCc-ccHHHHH-HHHHHHhCCCCCC
Q psy6566           6 HTSPTIGSNVEE--VIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR-ERISLTK-EELYKMLNHEDLS   79 (126)
Q Consensus         6 ~~~pTi~~~~~~--~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~   79 (126)
                      .+.||++.....  +..++  ..+.+||++|++.+..++..+.+.++.++.++|.... .++.... .+...+..... .
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~-~  107 (161)
T TIGR00231        29 EYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE-S  107 (161)
T ss_pred             cCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc-c
Confidence            566777755433  55677  7899999999999999999999999999999998876 5565554 34443433322 2


Q ss_pred             CCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          80 KAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        80 ~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +.|+++++||+|+.............    ......+++++||++|.
T Consensus       108 ~~p~ivv~nK~D~~~~~~~~~~~~~~----~~~~~~~~~~~sa~~~~  150 (161)
T TIGR00231       108 NVPIILVGNKIDLRDAKLKTHVAFLF----AKLNGEPIIPLSAETGK  150 (161)
T ss_pred             CCcEEEEEEcccCCcchhhHHHHHHH----hhccCCceEEeecCCCC
Confidence            78999999999997632112222221    12233469999999874

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.59  E-value=6.5e-14  Score=87.55  Aligned_cols=112  Identities=23%  Similarity=0.230  Sum_probs=76.6

Q ss_pred             ccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEec
Q psy6566          10 TIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANK   89 (126)
Q Consensus        10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK   89 (126)
                      |+......+...+..+.+|||||+..+...+..+++.+|++++|+|+.+...... ..++.... .   .+.|+++++||
T Consensus        49 ~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~-~---~~~~i~iv~nK  123 (189)
T cd00881          49 TIKSGVATFEWPDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQT-REHLRIAR-E---GGLPIIVAINK  123 (189)
T ss_pred             CeecceEEEeeCCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHH-H---CCCCeEEEEEC
Confidence            3444445556678899999999999999999999999999999999987554332 23333332 2   47899999999


Q ss_pred             CCCCCCCCHH----HHHhhcCcCc---------ccCCceEEEEeeeeeCC
Q psy6566          90 QDIKNSMSPV----EISNLLDLTS---------IKKQQWHIQSCCALTGE  126 (126)
Q Consensus        90 ~D~~~~~~~~----~v~~~~~~~~---------~~~~~~~~~~~Sa~~~~  126 (126)
                      +|+..+....    ++.+.+....         .+....+++++||++|.
T Consensus       124 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~  173 (189)
T cd00881         124 IDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGI  173 (189)
T ss_pred             CCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCc
Confidence            9997632222    2222222111         12346789999999874

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.58  E-value=1e-14  Score=101.99  Aligned_cols=116  Identities=18%  Similarity=0.122  Sum_probs=73.5

Q ss_pred             CCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHH--HHHHHHHHhCCCCCCCCeEEE
Q psy6566           8 SPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISL--TKEELYKMLNHEDLSKAAVLI   85 (126)
Q Consensus         8 ~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~piil   85 (126)
                      ..|+......+..++..+.+|||||++.|.......+..+|++++|+|+++.++...  ...++ .+.+..  ...|+++
T Consensus        70 g~Tid~~~~~~~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~-~~~~~~--~~~~iIV  146 (426)
T TIGR00483        70 GVTIDVAHWKFETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHA-FLARTL--GINQLIV  146 (426)
T ss_pred             CceEEEEEEEEccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHH-HHHHHc--CCCeEEE
Confidence            345555566666688999999999999987766667889999999999988643211  11111 122221  3358999


Q ss_pred             EEecCCCCCCCC--HH----HHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          86 YANKQDIKNSMS--PV----EISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        86 v~nK~D~~~~~~--~~----~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ++||+|+.+...  ..    ++...+.........++++++||++|+
T Consensus       147 viNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~  193 (426)
T TIGR00483       147 AINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGD  193 (426)
T ss_pred             EEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccc
Confidence            999999964211  11    111111111112234789999999874

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.57  E-value=2.1e-14  Score=100.46  Aligned_cols=109  Identities=19%  Similarity=0.116  Sum_probs=71.4

Q ss_pred             ceEEEEEECCEEEEEEEcCCCcchHHH-----------HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566          13 SNVEEVIWKNIHFIMWDLGGQQSLRAA-----------WSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus        13 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .....+..++..+.+|||||..+....           ...+++.+|++++|+|+++..+..+.. ++....+    .+.
T Consensus       210 ~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~----~~~  284 (429)
T TIGR03594       210 SIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR-IAGLILE----AGK  284 (429)
T ss_pred             cEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH----cCC
Confidence            334555567789999999997554321           134678999999999999876655542 3333322    468


Q ss_pred             eEEEEEecCCCC-CCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIK-NSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+. ......++...+..........+++++||++|.
T Consensus       285 ~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~  330 (429)
T TIGR03594       285 ALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQ  330 (429)
T ss_pred             cEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCC
Confidence            999999999997 222223333333322223345789999999874

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01889 SelB_euk SelB subfamily

Probab=99.57  E-value=2.8e-14  Score=90.00  Aligned_cols=114  Identities=16%  Similarity=0.123  Sum_probs=70.5

Q ss_pred             CCccCceEEEEEEC--------------CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHh
Q psy6566           8 SPTIGSNVEEVIWK--------------NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKML   73 (126)
Q Consensus         8 ~pTi~~~~~~~~~~--------------~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~   73 (126)
                      .+|++.....+.+.              +..+.+|||||+..+........+.+|++++|+|+.+.........+.  ..
T Consensus        39 g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~  116 (192)
T cd01889          39 GITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IG  116 (192)
T ss_pred             CCeeeecceEEEecccccccccccccccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HH
Confidence            36777666666664              779999999999765444434456789999999998744333322211  11


Q ss_pred             CCCCCCCCeEEEEEecCCCCCCCCHH----HHHhhcCcCc--ccCCceEEEEeeeeeCC
Q psy6566          74 NHEDLSKAAVLIYANKQDIKNSMSPV----EISNLLDLTS--IKKQQWHIQSCCALTGE  126 (126)
Q Consensus        74 ~~~~~~~~piilv~nK~D~~~~~~~~----~v~~~~~~~~--~~~~~~~~~~~Sa~~~~  126 (126)
                      ..   .+.|+++++||+|+.......    ++...+....  ....+++++++||++|+
T Consensus       117 ~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~  172 (192)
T cd01889         117 EI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGG  172 (192)
T ss_pred             HH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCC
Confidence            11   257999999999987432211    1222111111  01245789999999874

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.55  E-value=8.7e-14  Score=97.74  Aligned_cols=100  Identities=19%  Similarity=0.237  Sum_probs=71.6

Q ss_pred             CccCceEEEEEECCEEEEEEEcCCCcchHHH--------HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCC
Q psy6566           9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAA--------WSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK   80 (126)
Q Consensus         9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~   80 (126)
                      +|..+....+.+++..+.+|||+|.+.+...        ...+++.+|++++|+|++++.++++... +..      ..+
T Consensus       249 tT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~-l~~------~~~  321 (449)
T PRK05291        249 TTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEI-LEE------LKD  321 (449)
T ss_pred             cccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHH-HHh------cCC
Confidence            3555666778888999999999998654332        2336889999999999998877765433 322      257


Q ss_pred             CeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          81 AAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        81 ~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .|+++|+||+|+.....   ..        .....+++++||++|+
T Consensus       322 ~piiiV~NK~DL~~~~~---~~--------~~~~~~~i~iSAktg~  356 (449)
T PRK05291        322 KPVIVVLNKADLTGEID---LE--------EENGKPVIRISAKTGE  356 (449)
T ss_pred             CCcEEEEEhhhccccch---hh--------hccCCceEEEEeeCCC
Confidence            89999999999975321   11        1223468999999874

>PRK15494 era GTPase Era; Provisional

Probab=99.55  E-value=1.7e-13  Score=93.26  Aligned_cols=111  Identities=18%  Similarity=0.208  Sum_probs=69.4

Q ss_pred             cCCccCceEEEEEECCEEEEEEEcCCCcc-hHHH-------HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566           7 TSPTIGSNVEEVIWKNIHFIMWDLGGQQS-LRAA-------WSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL   78 (126)
Q Consensus         7 ~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~-------~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~   78 (126)
                      +.+|.+.....+..++.++.+|||||+.. +..+       ....++.||++++|+|..+  ++.+...++...++.   
T Consensus        84 ~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~---  158 (339)
T PRK15494         84 VQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK--SFDDITHNILDKLRS---  158 (339)
T ss_pred             CCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh---
Confidence            44565655566777888999999999843 2211       1234789999999999764  444443334333333   


Q ss_pred             CCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          79 SKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        79 ~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .+.|.++++||+|+... ...++...+...   .....++++||++|.
T Consensus       159 ~~~p~IlViNKiDl~~~-~~~~~~~~l~~~---~~~~~i~~iSAktg~  202 (339)
T PRK15494        159 LNIVPIFLLNKIDIESK-YLNDIKAFLTEN---HPDSLLFPISALSGK  202 (339)
T ss_pred             cCCCEEEEEEhhcCccc-cHHHHHHHHHhc---CCCcEEEEEeccCcc
Confidence            24577889999998653 223333322211   112479999999873

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.55  E-value=2.8e-14  Score=90.80  Aligned_cols=101  Identities=17%  Similarity=0.069  Sum_probs=63.2

Q ss_pred             EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHH
Q psy6566          23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEIS  102 (126)
Q Consensus        23 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~  102 (126)
                      ..+.+|||||++.+...+...+..+|++++|+|++++.........+..+...   ...|+++++||+|+.+........
T Consensus        83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~~~  159 (203)
T cd01888          83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALENY  159 (203)
T ss_pred             cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHHHH
Confidence            68999999999999888888888999999999998632111112222222111   234789999999997532111111


Q ss_pred             hhcCcCcc--cCCceEEEEeeeeeCC
Q psy6566         103 NLLDLTSI--KKQQWHIQSCCALTGE  126 (126)
Q Consensus       103 ~~~~~~~~--~~~~~~~~~~Sa~~~~  126 (126)
                      +.......  ....++++++||++|+
T Consensus       160 ~~i~~~~~~~~~~~~~i~~vSA~~g~  185 (203)
T cd01888         160 EQIKKFVKGTIAENAPIIPISAQLKY  185 (203)
T ss_pred             HHHHHHHhccccCCCcEEEEeCCCCC
Confidence            11110000  1134679999999874

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.54  E-value=1.8e-13  Score=98.84  Aligned_cols=97  Identities=14%  Similarity=0.138  Sum_probs=68.3

Q ss_pred             EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHH
Q psy6566          23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEIS  102 (126)
Q Consensus        23 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~  102 (126)
                      ..+.+|||||++.|...+..+++.||++++|+|+++..+......|+... .    .++|+++++||+|+.... ...+.
T Consensus        70 ~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~-~~~~~  143 (595)
T TIGR01393        70 YVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSAD-PERVK  143 (595)
T ss_pred             EEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccC-HHHHH
Confidence            78999999999999999999999999999999999866665554443322 2    367999999999986532 22221


Q ss_pred             hhcCcCcccCCceEEEEeeeeeCC
Q psy6566         103 NLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ..+... .......++++||++|.
T Consensus       144 ~el~~~-lg~~~~~vi~vSAktG~  166 (595)
T TIGR01393       144 KEIEEV-IGLDASEAILASAKTGI  166 (595)
T ss_pred             HHHHHH-hCCCcceEEEeeccCCC
Confidence            111110 01111258999999874

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.54  E-value=8.4e-14  Score=97.37  Aligned_cols=117  Identities=19%  Similarity=0.231  Sum_probs=73.7

Q ss_pred             cCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHH-HHHHHHHHhCCCCCCCCeEEE
Q psy6566           7 TSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISL-TKEELYKMLNHEDLSKAAVLI   85 (126)
Q Consensus         7 ~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~piil   85 (126)
                      ...|+......+..++..+.+|||||++.|.......++.+|++++|+|++++..+.. ...++. +....  ...|+++
T Consensus        68 rG~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~-~~~~~--~~~~iiv  144 (425)
T PRK12317         68 RGVTIDLAHKKFETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVF-LARTL--GINQLIV  144 (425)
T ss_pred             cCccceeeeEEEecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHH-HHHHc--CCCeEEE
Confidence            4456677777777789999999999999887655556789999999999986312211 222222 22221  2247999


Q ss_pred             EEecCCCCCCCC--HH----HHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          86 YANKQDIKNSMS--PV----EISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        86 v~nK~D~~~~~~--~~----~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ++||+|+.+...  ..    ++...+.........++++.+||++|+
T Consensus       145 viNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~  191 (425)
T PRK12317        145 AINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGD  191 (425)
T ss_pred             EEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCC
Confidence            999999975211  11    122221111111224689999999874

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.52  E-value=3.4e-13  Score=95.41  Aligned_cols=99  Identities=21%  Similarity=0.302  Sum_probs=65.1

Q ss_pred             EEEEECCEEEEEEEcCCCcc--------hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEE
Q psy6566          16 EEVIWKNIHFIMWDLGGQQS--------LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYA   87 (126)
Q Consensus        16 ~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~   87 (126)
                      ..+.+++..+.+|||||.+.        +...+..+++.||++++|+|+++..++...  .+...++.   .++|+++|+
T Consensus        79 ~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~--~i~~~l~~---~~~piilV~  153 (472)
T PRK03003         79 YDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDE--AVARVLRR---SGKPVILAA  153 (472)
T ss_pred             EEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHH--HHHHHHHH---cCCCEEEEE
Confidence            44455788899999999763        444566788999999999999987554322  23333333   478999999


Q ss_pred             ecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          88 NKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        88 nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ||+|+....  .+.......    ..+ ..+++||++|.
T Consensus       154 NK~Dl~~~~--~~~~~~~~~----g~~-~~~~iSA~~g~  185 (472)
T PRK03003        154 NKVDDERGE--ADAAALWSL----GLG-EPHPVSALHGR  185 (472)
T ss_pred             ECccCCccc--hhhHHHHhc----CCC-CeEEEEcCCCC
Confidence            999986431  111111111    111 24689999874

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.52  E-value=6.1e-14  Score=101.12  Aligned_cols=113  Identities=17%  Similarity=0.134  Sum_probs=74.4

Q ss_pred             CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEE
Q psy6566           9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLIYA   87 (126)
Q Consensus         9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~   87 (126)
                      .|+++....+.+++..+.+||+||++.|.......+.++|++++|+|+++.. .....+.+. .++.   .++| +++++
T Consensus        36 iTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~-~~qT~ehl~-il~~---lgi~~iIVVl  110 (581)
T TIGR00475        36 MTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGV-MTQTGEHLA-VLDL---LGIPHTIVVI  110 (581)
T ss_pred             ceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCC-cHHHHHHHH-HHHH---cCCCeEEEEE
Confidence            3555666677777899999999999999988888899999999999998731 112222222 2222   3566 99999


Q ss_pred             ecCCCCCCCCHHHHHhhcCc---CcccCCceEEEEeeeeeCC
Q psy6566          88 NKQDIKNSMSPVEISNLLDL---TSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        88 nK~D~~~~~~~~~v~~~~~~---~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ||+|+.+....+.+......   ......+.+++++||++|+
T Consensus       111 NK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~  152 (581)
T TIGR00475       111 TKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQ  152 (581)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCC
Confidence            99999753211111111110   0001125689999999874

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.52  E-value=1.1e-14  Score=87.61  Aligned_cols=87  Identities=16%  Similarity=0.099  Sum_probs=56.7

Q ss_pred             EEEEcCCCc-----chHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCC-CCHH
Q psy6566          26 IMWDLGGQQ-----SLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNS-MSPV   99 (126)
Q Consensus        26 ~i~Dt~G~~-----~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~-~~~~   99 (126)
                      .+|||||+.     .++.+.. .++++|++++|+|++++.++... .| ....      ..|+++++||+|+.+. ...+
T Consensus        38 ~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~~-~~-~~~~------~~p~ilv~NK~Dl~~~~~~~~  108 (142)
T TIGR02528        38 GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRFPP-GF-ASIF------VKPVIGLVTKIDLAEADVDIE  108 (142)
T ss_pred             eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCCh-hH-HHhc------cCCeEEEEEeeccCCcccCHH
Confidence            689999982     3444444 47899999999999998877542 22 2221      2399999999998642 2222


Q ss_pred             HHHhhcCcCcccCCc-eEEEEeeeeeCC
Q psy6566         100 EISNLLDLTSIKKQQ-WHIQSCCALTGE  126 (126)
Q Consensus       100 ~v~~~~~~~~~~~~~-~~~~~~Sa~~~~  126 (126)
                      +.....     +..+ .+++++||++|.
T Consensus       109 ~~~~~~-----~~~~~~~~~~~Sa~~~~  131 (142)
T TIGR02528       109 RAKELL-----ETAGAEPIFEISSVDEQ  131 (142)
T ss_pred             HHHHHH-----HHcCCCcEEEEecCCCC
Confidence            222111     1122 268999999874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.52  E-value=1.4e-13  Score=99.37  Aligned_cols=110  Identities=17%  Similarity=0.210  Sum_probs=78.4

Q ss_pred             ccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEec
Q psy6566          10 TIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANK   89 (126)
Q Consensus        10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK   89 (126)
                      |+......+.+++.++.+|||||+..|...+..+++.+|++++|+|+.+. .......++..+..    .++|+++++||
T Consensus        51 TI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~----~~ip~IVviNK  125 (594)
T TIGR01394        51 TILAKNTAIRYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINK  125 (594)
T ss_pred             cEEeeeEEEEECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH----CCCCEEEEEEC
Confidence            34444455666999999999999999999999999999999999998763 34455666666654    36889999999


Q ss_pred             CCCCCCCCHHHH----HhhcCcCcc--cCCceEEEEeeeeeC
Q psy6566          90 QDIKNSMSPVEI----SNLLDLTSI--KKQQWHIQSCCALTG  125 (126)
Q Consensus        90 ~D~~~~~~~~~v----~~~~~~~~~--~~~~~~~~~~Sa~~~  125 (126)
                      +|+.+.. ..++    ...+...-.  ....++++.+||++|
T Consensus       126 iD~~~a~-~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g  166 (594)
T TIGR01394       126 IDRPSAR-PDEVVDEVFDLFAELGADDEQLDFPIVYASGRAG  166 (594)
T ss_pred             CCCCCcC-HHHHHHHHHHHHHhhccccccccCcEEechhhcC
Confidence            9986532 2222    222211001  233578999999987

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK10218 GTP-binding protein; Provisional

Probab=99.52  E-value=2.9e-13  Score=97.72  Aligned_cols=114  Identities=17%  Similarity=0.225  Sum_probs=77.8

Q ss_pred             CCccCceE----EEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE
Q psy6566           8 SPTIGSNV----EEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV   83 (126)
Q Consensus         8 ~pTi~~~~----~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi   83 (126)
                      +++.|+..    ..+..++..+.+|||||+..|...+..+++.+|++++|+|+++.. ......++.....    .++|.
T Consensus        49 E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~-~~qt~~~l~~a~~----~gip~  123 (607)
T PRK10218         49 EKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGP-MPQTRFVTKKAFA----YGLKP  123 (607)
T ss_pred             cccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCc-cHHHHHHHHHHHH----cCCCE
Confidence            44556443    233448899999999999999999999999999999999998643 2233444554433    36788


Q ss_pred             EEEEecCCCCCCCCHH---HHHhhcCc-Ccc-cCCceEEEEeeeeeCC
Q psy6566          84 LIYANKQDIKNSMSPV---EISNLLDL-TSI-KKQQWHIQSCCALTGE  126 (126)
Q Consensus        84 ilv~nK~D~~~~~~~~---~v~~~~~~-~~~-~~~~~~~~~~Sa~~~~  126 (126)
                      ++++||+|+.+.....   ++...+.. ... ....++++.+||++|.
T Consensus       124 IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~  171 (607)
T PRK10218        124 IVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGI  171 (607)
T ss_pred             EEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCc
Confidence            9999999987643222   22222211 111 2345789999999873

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.52  E-value=4.4e-13  Score=93.91  Aligned_cols=99  Identities=15%  Similarity=0.089  Sum_probs=69.9

Q ss_pred             CceEEEEEECCEEEEEEEcCCCcchHHH--------HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE
Q psy6566          12 GSNVEEVIWKNIHFIMWDLGGQQSLRAA--------WSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV   83 (126)
Q Consensus        12 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi   83 (126)
                      .+....+.+++..+.+|||||++.+...        ...+++.+|++++|+|++++.+++..  |+.... .   .+.|+
T Consensus       240 d~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~-~---~~~pi  313 (442)
T TIGR00450       240 DVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLN-K---SKKPF  313 (442)
T ss_pred             EEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHh-h---CCCCE
Confidence            3555677779999999999998665432        23568899999999999988777654  554442 2   46899


Q ss_pred             EEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          84 LIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        84 ilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      ++|+||+|+... ....+        .+..+.+++++||+++
T Consensus       314 IlV~NK~Dl~~~-~~~~~--------~~~~~~~~~~vSak~~  346 (442)
T TIGR00450       314 ILVLNKIDLKIN-SLEFF--------VSSKVLNSSNLSAKQL  346 (442)
T ss_pred             EEEEECccCCCc-chhhh--------hhhcCCceEEEEEecC
Confidence            999999998653 11111        1122346889999973

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.51  E-value=4.5e-14  Score=82.47  Aligned_cols=69  Identities=23%  Similarity=0.442  Sum_probs=55.6

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHH---HHHHhCCCCCCCCeEEEEEecCC
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEE---LYKMLNHEDLSKAAVLIYANKQD   91 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~piilv~nK~D   91 (126)
                      +...+.+||++|++.+...+...++.++++++|+|++++.+++.+..+   +..+...  ..++|+++++||.|
T Consensus        48 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D  119 (119)
T PF08477_consen   48 DRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD  119 (119)
T ss_dssp             EEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred             CceEEEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence            445699999999999988877789999999999999999999987554   4444322  15699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.51  E-value=6.4e-13  Score=80.64  Aligned_cols=97  Identities=16%  Similarity=0.084  Sum_probs=68.4

Q ss_pred             ceEEEEEECCEEEEEEEcCCCcchHH--------HHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEE
Q psy6566          13 SNVEEVIWKNIHFIMWDLGGQQSLRA--------AWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVL   84 (126)
Q Consensus        13 ~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii   84 (126)
                      +....+..++..+.+|||+|...+..        .....+..++++++|+|++++.+......+..       ..+.|++
T Consensus        39 ~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi  111 (157)
T cd04164          39 VIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL-------PADKPII  111 (157)
T ss_pred             eEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEE
Confidence            44455666888999999999755432        12245778999999999998777666543322       2578999


Q ss_pred             EEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          85 IYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        85 lv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +++||+|+......          .......+++++||+++.
T Consensus       112 ~v~nK~D~~~~~~~----------~~~~~~~~~~~~Sa~~~~  143 (157)
T cd04164         112 VVLNKSDLLPDSEL----------LSLLAGKPIIAISAKTGE  143 (157)
T ss_pred             EEEEchhcCCcccc----------ccccCCCceEEEECCCCC
Confidence            99999998764221          122335579999999873

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01894 EngA1 EngA1 subfamily

Probab=99.51  E-value=7.6e-13  Score=80.36  Aligned_cols=102  Identities=20%  Similarity=0.233  Sum_probs=67.6

Q ss_pred             CceEEEEEECCEEEEEEEcCCCcchHH--------HHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE
Q psy6566          12 GSNVEEVIWKNIHFIMWDLGGQQSLRA--------AWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV   83 (126)
Q Consensus        12 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi   83 (126)
                      ..........+..+.+|||||...+..        .+...++.+|++++|+|..+..+....  .+...++.   .+.|+
T Consensus        34 ~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~--~~~~~~~~---~~~pi  108 (157)
T cd01894          34 DRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADE--EIAKYLRK---SKKPV  108 (157)
T ss_pred             CceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHH--HHHHHHHh---cCCCE
Confidence            345556666888999999999887543        344567889999999998765433332  23333333   35899


Q ss_pred             EEEEecCCCCCCCCHHHHHhhcCcCcccCCce-EEEEeeeeeCC
Q psy6566          84 LIYANKQDIKNSMSPVEISNLLDLTSIKKQQW-HIQSCCALTGE  126 (126)
Q Consensus        84 ilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~  126 (126)
                      ++++||+|+.+....   .....     ..+. +++++||++|.
T Consensus       109 iiv~nK~D~~~~~~~---~~~~~-----~~~~~~~~~~Sa~~~~  144 (157)
T cd01894         109 ILVVNKVDNIKEEDE---AAEFY-----SLGFGEPIPISAEHGR  144 (157)
T ss_pred             EEEEECcccCChHHH---HHHHH-----hcCCCCeEEEecccCC
Confidence            999999999764211   11111     1122 57899999874

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.50  E-value=6.1e-13  Score=98.22  Aligned_cols=110  Identities=18%  Similarity=0.158  Sum_probs=73.9

Q ss_pred             cCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecC
Q psy6566          11 IGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQ   90 (126)
Q Consensus        11 i~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~   90 (126)
                      ..+....+.+++..+.||||||++.|..++...++.+|++++|+|+++... ......+... ..   .++|+++++||+
T Consensus       325 ~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~-~qT~e~i~~a-~~---~~vPiIVviNKi  399 (787)
T PRK05306        325 QHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVM-PQTIEAINHA-KA---AGVPIIVAINKI  399 (787)
T ss_pred             eeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCC-HhHHHHHHHH-Hh---cCCcEEEEEECc
Confidence            334445566678899999999999999999999999999999999886321 1122223222 22   468999999999


Q ss_pred             CCCCCCCHHHHHhhcCc-C-ccc--CCceEEEEeeeeeCC
Q psy6566          91 DIKNSMSPVEISNLLDL-T-SIK--KQQWHIQSCCALTGE  126 (126)
Q Consensus        91 D~~~~~~~~~v~~~~~~-~-~~~--~~~~~~~~~Sa~~~~  126 (126)
                      |+.+. ..+.+...+.. . ...  ...++++++||++|.
T Consensus       400 Dl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~  438 (787)
T PRK05306        400 DKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGE  438 (787)
T ss_pred             ccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCC
Confidence            99653 22333222111 1 111  124789999999884

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.49  E-value=8.5e-13  Score=95.16  Aligned_cols=111  Identities=18%  Similarity=0.197  Sum_probs=73.1

Q ss_pred             ccCceEEEEEECC-EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEe
Q psy6566          10 TIGSNVEEVIWKN-IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYAN   88 (126)
Q Consensus        10 Ti~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n   88 (126)
                      |..+....+.+++ ..+.+|||||++.|..++...+..+|++++|+|+++... ......+... ..   .++|+++++|
T Consensus       121 T~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~-~qT~e~i~~~-~~---~~vPiIVviN  195 (587)
T TIGR00487       121 TQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVM-PQTIEAISHA-KA---ANVPIIVAIN  195 (587)
T ss_pred             eecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCC-HhHHHHHHHH-HH---cCCCEEEEEE
Confidence            4445555666643 489999999999999999989999999999999876321 2222223222 12   4689999999


Q ss_pred             cCCCCCCCCHHHHHhhcCcC-cc-c--CCceEEEEeeeeeCC
Q psy6566          89 KQDIKNSMSPVEISNLLDLT-SI-K--KQQWHIQSCCALTGE  126 (126)
Q Consensus        89 K~D~~~~~~~~~v~~~~~~~-~~-~--~~~~~~~~~Sa~~~~  126 (126)
                      |+|+.+. ..+.+...+... .. .  ....+++++||++|+
T Consensus       196 KiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe  236 (587)
T TIGR00487       196 KIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGD  236 (587)
T ss_pred             CcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence            9999653 223333322111 00 0  123579999999984

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.49  E-value=8.6e-13  Score=95.49  Aligned_cols=98  Identities=16%  Similarity=0.135  Sum_probs=67.4

Q ss_pred             CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHH
Q psy6566          22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEI  101 (126)
Q Consensus        22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v  101 (126)
                      +..+.+|||||++.|...+..+++.+|++++|+|+++.........|. ....    .++|+++++||+|+.... ...+
T Consensus        73 ~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~-~~~~----~~lpiIvViNKiDl~~a~-~~~v  146 (600)
T PRK05433         73 TYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY-LALE----NDLEIIPVLNKIDLPAAD-PERV  146 (600)
T ss_pred             cEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHH-HHHH----CCCCEEEEEECCCCCccc-HHHH
Confidence            688999999999999999999999999999999998765444443332 2222    368999999999986532 1222


Q ss_pred             HhhcCcCcccCCceEEEEeeeeeCC
Q psy6566         102 SNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ...+... .......++.+||++|.
T Consensus       147 ~~ei~~~-lg~~~~~vi~iSAktG~  170 (600)
T PRK05433        147 KQEIEDV-IGIDASDAVLVSAKTGI  170 (600)
T ss_pred             HHHHHHH-hCCCcceEEEEecCCCC
Confidence            1111100 01111248999999874

>cd01895 EngA2 EngA2 subfamily

Probab=99.48  E-value=1.5e-12  Score=80.14  Aligned_cols=109  Identities=19%  Similarity=0.110  Sum_probs=68.8

Q ss_pred             ceEEEEEECCEEEEEEEcCCCcch----------HH-HHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566          13 SNVEEVIWKNIHFIMWDLGGQQSL----------RA-AWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus        13 ~~~~~~~~~~~~~~i~Dt~G~~~~----------~~-~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .....+..++..+.+|||+|....          .. .....++.+|++++|+|..++.+.... .++.... .   .+.
T Consensus        40 ~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~-~---~~~  114 (174)
T cd01895          40 SIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDL-RIAGLIL-E---EGK  114 (174)
T ss_pred             ceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHH-HHHHHHH-h---cCC
Confidence            334556667888999999996433          11 122356789999999999887665443 2233322 2   358


Q ss_pred             eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+...  ...+.+..............+++++||++|+
T Consensus       115 ~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  161 (174)
T cd01895         115 ALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQ  161 (174)
T ss_pred             CEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCC
Confidence            99999999998764  2223333333222222224579999999874

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.48  E-value=4.2e-13  Score=94.62  Aligned_cols=114  Identities=18%  Similarity=0.210  Sum_probs=72.1

Q ss_pred             CCccCceEEEEEECCEEEEEEEcCCCcc----hH---HHHHhhccCCcEEEEEEECCCc----ccHHHHHH---HHHHHh
Q psy6566           8 SPTIGSNVEEVIWKNIHFIMWDLGGQQS----LR---AAWSTYYTNTEFVILVIDSTDR----ERISLTKE---ELYKML   73 (126)
Q Consensus         8 ~pTi~~~~~~~~~~~~~~~i~Dt~G~~~----~~---~~~~~~~~~~~~~l~v~d~~~~----~~~~~~~~---~~~~~~   73 (126)
                      -+|+..+...+.+++..+.+|||||...    ..   .....+++.++++++|+|+++.    +.+.+...   .+..+.
T Consensus       191 fTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~  270 (500)
T PRK12296        191 FTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYA  270 (500)
T ss_pred             cccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhh
Confidence            4677777777888889999999999632    11   1223357789999999999753    34444333   333332


Q ss_pred             CC-------CCCCCCeEEEEEecCCCCCCCCHH-HHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          74 NH-------EDLSKAAVLIYANKQDIKNSMSPV-EISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        74 ~~-------~~~~~~piilv~nK~D~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ..       ....+.|.++++||+|+....... .+...+     ...+++++++||++++
T Consensus       271 ~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l-----~~~g~~Vf~ISA~tge  326 (500)
T PRK12296        271 PALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPEL-----EARGWPVFEVSAASRE  326 (500)
T ss_pred             hcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHH-----HHcCCeEEEEECCCCC
Confidence            11       023578999999999997532111 111111     2235689999999874

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.47  E-value=7.9e-13  Score=84.43  Aligned_cols=114  Identities=19%  Similarity=0.174  Sum_probs=69.4

Q ss_pred             CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEe
Q psy6566           9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYAN   88 (126)
Q Consensus         9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n   88 (126)
                      .|+......+..++..+.+|||||++.|.......++.+|++++|+|+++... ......+. +.+..  ...++++++|
T Consensus        63 ~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~-~~~~~~~~-~~~~~--~~~~iIvviN  138 (208)
T cd04166          63 ITIDVAYRYFSTPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVL-EQTRRHSY-ILSLL--GIRHVVVAVN  138 (208)
T ss_pred             cCeecceeEEecCCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc-HhHHHHHH-HHHHc--CCCcEEEEEE
Confidence            34444455566688899999999999887777777899999999999986432 11222222 22221  2245788999


Q ss_pred             cCCCCCCCC--HHHHHhhcCcC--cccCCceEEEEeeeeeCC
Q psy6566          89 KQDIKNSMS--PVEISNLLDLT--SIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        89 K~D~~~~~~--~~~v~~~~~~~--~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+|+.+...  ...+.......  .......+++.+||++|.
T Consensus       139 K~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~  180 (208)
T cd04166         139 KMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGD  180 (208)
T ss_pred             chhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCC
Confidence            999865211  11111111100  011123568999999873

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>TIGR00436 era GTP-binding protein Era

Probab=99.46  E-value=1.6e-12  Score=86.01  Aligned_cols=107  Identities=21%  Similarity=0.221  Sum_probs=65.3

Q ss_pred             ccCceEEEEEE-CCEEEEEEEcCCCcchH--------HHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCC
Q psy6566          10 TIGSNVEEVIW-KNIHFIMWDLGGQQSLR--------AAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK   80 (126)
Q Consensus        10 Ti~~~~~~~~~-~~~~~~i~Dt~G~~~~~--------~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~   80 (126)
                      |+......+.. ++.++.+|||||.....        .....+++.+|++++|+|+++..+..   .++...+..   .+
T Consensus        34 TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~---~~i~~~l~~---~~  107 (270)
T TIGR00436        34 TTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG---EFVLTKLQN---LK  107 (270)
T ss_pred             cccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH---HHHHHHHHh---cC
Confidence            33333333333 66789999999974321        12345678999999999999876654   223333333   46


Q ss_pred             CeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCc-eEEEEeeeeeCC
Q psy6566          81 AAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQ-WHIQSCCALTGE  126 (126)
Q Consensus        81 ~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~  126 (126)
                      .|+++++||+|+.+.   ..+..... ....... .+++++||++|.
T Consensus       108 ~p~ilV~NK~Dl~~~---~~~~~~~~-~~~~~~~~~~v~~iSA~~g~  150 (270)
T TIGR00436       108 RPVVLTRNKLDNKFK---DKLLPLID-KYAILEDFKDIVPISALTGD  150 (270)
T ss_pred             CCEEEEEECeeCCCH---HHHHHHHH-HHHhhcCCCceEEEecCCCC
Confidence            899999999998642   21111110 0111111 268999999874

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.46  E-value=6.1e-13  Score=83.68  Aligned_cols=113  Identities=20%  Similarity=0.170  Sum_probs=77.4

Q ss_pred             CCccCceEEEEE--ECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEE
Q psy6566           8 SPTIGSNVEEVI--WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLI   85 (126)
Q Consensus         8 ~pTi~~~~~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piil   85 (126)
                      .-|+......+.  ..+..+.++||||+..|.......++.+|++++|+|+.+.... .....+..+..    .++|+++
T Consensus        53 ~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~----~~~p~iv  127 (188)
T PF00009_consen   53 GITIDLSFISFEKNENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILRE----LGIPIIV  127 (188)
T ss_dssp             TSSSSSEEEEEEBTESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHH----TT-SEEE
T ss_pred             ccccccccccccccccccceeecccccccceeecccceecccccceeeeeccccccc-ccccccccccc----cccceEE
Confidence            345666677777  7899999999999999998888889999999999999865332 23334444432    4688999


Q ss_pred             EEecCCCCCCCCHHHHHh----hcCcCcc-cC-CceEEEEeeeeeCC
Q psy6566          86 YANKQDIKNSMSPVEISN----LLDLTSI-KK-QQWHIQSCCALTGE  126 (126)
Q Consensus        86 v~nK~D~~~~~~~~~v~~----~~~~~~~-~~-~~~~~~~~Sa~~~~  126 (126)
                      +.||+|+... ...++..    .+..... .. ..++++.+||++|.
T Consensus       128 vlNK~D~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~  173 (188)
T PF00009_consen  128 VLNKMDLIEK-ELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGD  173 (188)
T ss_dssp             EEETCTSSHH-HHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTB
T ss_pred             eeeeccchhh-hHHHHHHHHHHHhccccccCccccceEEEEecCCCC
Confidence            9999999731 1122211    1111111 11 35899999999874

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>KOG4423|consensus

Probab=99.46  E-value=7e-16  Score=94.54  Aligned_cols=115  Identities=20%  Similarity=0.328  Sum_probs=85.8

Q ss_pred             ccCCccCceE--EEEEE---CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC--
Q psy6566           6 HTSPTIGSNV--EEVIW---KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL--   78 (126)
Q Consensus         6 ~~~pTi~~~~--~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~--   78 (126)
                      +|..|||+.+  +..++   .-+++++||.+||++|..+-..|++.+++..+|||+++.-.|+....|...+.....+  
T Consensus        53 ~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpn  132 (229)
T KOG4423|consen   53 HYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPN  132 (229)
T ss_pred             HHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCC
Confidence            5778888444  55555   3357899999999999999999999999999999999999999999988777654333  


Q ss_pred             -CCCeEEEEEecCCCCCCCC---HHHHHhhcCcCcccCCce-EEEEeeeeeC
Q psy6566          79 -SKAAVLIYANKQDIKNSMS---PVEISNLLDLTSIKKQQW-HIQSCCALTG  125 (126)
Q Consensus        79 -~~~piilv~nK~D~~~~~~---~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~  125 (126)
                       .-+|+++..||||......   .+.+...     .+.+++ .++++|||.+
T Consensus       133 g~Pv~~vllankCd~e~~a~~~~~~~~d~f-----~kengf~gwtets~Ken  179 (229)
T KOG4423|consen  133 GTPVPCVLLANKCDQEKSAKNEATRQFDNF-----KKENGFEGWTETSAKEN  179 (229)
T ss_pred             CCcchheeccchhccChHhhhhhHHHHHHH-----HhccCccceeeeccccc
Confidence             3478999999999865311   1222222     223333 5899999865

>PRK04213 GTP-binding protein; Provisional

Probab=99.46  E-value=1.5e-13  Score=87.12  Aligned_cols=113  Identities=23%  Similarity=0.302  Sum_probs=64.3

Q ss_pred             cCCccCceEEEEEECCEEEEEEEcCC-----------CcchHHHHHhhcc----CCcEEEEEEECCCcccHH--------
Q psy6566           7 TSPTIGSNVEEVIWKNIHFIMWDLGG-----------QQSLRAAWSTYYT----NTEFVILVIDSTDRERIS--------   63 (126)
Q Consensus         7 ~~pTi~~~~~~~~~~~~~~~i~Dt~G-----------~~~~~~~~~~~~~----~~~~~l~v~d~~~~~~~~--------   63 (126)
                      +.|++......+.++  .+.+|||||           ++.++..+..+++    .++++++|+|.+....+.        
T Consensus        38 ~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~  115 (201)
T PRK04213         38 KRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGE  115 (201)
T ss_pred             CCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCC
Confidence            345444433444444  689999999           5777777766654    457888898875432110        


Q ss_pred             --HHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCC--CHHHHHhhcCcCcc-cCCceEEEEeeeeeC
Q psy6566          64 --LTKEELYKMLNHEDLSKAAVLIYANKQDIKNSM--SPVEISNLLDLTSI-KKQQWHIQSCCALTG  125 (126)
Q Consensus        64 --~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~v~~~~~~~~~-~~~~~~~~~~Sa~~~  125 (126)
                        .... +...+..   .++|+++++||+|+.+..  ...++...++.... ...+.+++++||++|
T Consensus       116 ~~~~~~-l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g  178 (201)
T PRK04213        116 IPIDVE-MFDFLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQWQDIIAPISAKKG  178 (201)
T ss_pred             cHHHHH-HHHHHHH---cCCCeEEEEECccccCcHHHHHHHHHHHhcCCccccccCCcEEEEecccC
Confidence              0111 1222222   468999999999986532  11233333332100 111236899999986

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.45  E-value=2.3e-12  Score=89.66  Aligned_cols=111  Identities=21%  Similarity=0.217  Sum_probs=70.5

Q ss_pred             CccCceEEEEEEC-CEEEEEEEcCCCcc-------hHHHHHhhccCCcEEEEEEECCCc---ccHHHHHHHHHHHhCC-C
Q psy6566           9 PTIGSNVEEVIWK-NIHFIMWDLGGQQS-------LRAAWSTYYTNTEFVILVIDSTDR---ERISLTKEELYKMLNH-E   76 (126)
Q Consensus         9 pTi~~~~~~~~~~-~~~~~i~Dt~G~~~-------~~~~~~~~~~~~~~~l~v~d~~~~---~~~~~~~~~~~~~~~~-~   76 (126)
                      +|...+...+.+. +..+.+||+||...       ....+..+++.++++++|+|+++.   +++++...|..++... .
T Consensus       191 TTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~  270 (424)
T PRK12297        191 TTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNP  270 (424)
T ss_pred             ceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhch
Confidence            4555555556665 78999999999632       122333446779999999999754   5666665555544332 2


Q ss_pred             CCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          77 DLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ...+.|.++++||+|+...  ...+....     +..+.+++.+||++++
T Consensus       271 ~L~~kP~IVV~NK~DL~~~--~e~l~~l~-----~~l~~~i~~iSA~tge  313 (424)
T PRK12297        271 RLLERPQIVVANKMDLPEA--EENLEEFK-----EKLGPKVFPISALTGQ  313 (424)
T ss_pred             hccCCcEEEEEeCCCCcCC--HHHHHHHH-----HHhCCcEEEEeCCCCC
Confidence            2357899999999998542  11121111     1111468999999874

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.45  E-value=2.7e-12  Score=94.24  Aligned_cols=100  Identities=19%  Similarity=0.223  Sum_probs=68.2

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHH
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVE  100 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~  100 (126)
                      .+..+.+|||||++.|..++..+++.+|++++|+|+++..... ....+..+ ..   .++|+++++||+|+... ....
T Consensus       293 ~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~Q-T~E~I~~~-k~---~~iPiIVViNKiDl~~~-~~e~  366 (742)
T CHL00189        293 ENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQ-TIEAINYI-QA---ANVPIIVAINKIDKANA-NTER  366 (742)
T ss_pred             CceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChh-hHHHHHHH-Hh---cCceEEEEEECCCcccc-CHHH
Confidence            3589999999999999999999999999999999987632211 11222222 22   46899999999999753 2233


Q ss_pred             HHhhcCcC-c-cc--CCceEEEEeeeeeCC
Q psy6566         101 ISNLLDLT-S-IK--KQQWHIQSCCALTGE  126 (126)
Q Consensus       101 v~~~~~~~-~-~~--~~~~~~~~~Sa~~~~  126 (126)
                      +...+... . ..  ...++++++||++|.
T Consensus       367 v~~eL~~~~ll~e~~g~~vpvv~VSAktG~  396 (742)
T CHL00189        367 IKQQLAKYNLIPEKWGGDTPMIPISASQGT  396 (742)
T ss_pred             HHHHHHHhccchHhhCCCceEEEEECCCCC
Confidence            33322111 0 11  123689999999884

>cd00880 Era_like Era (E

Probab=99.44  E-value=3e-12  Score=77.39  Aligned_cols=110  Identities=18%  Similarity=0.111  Sum_probs=72.9

Q ss_pred             CceEEEEEEC-CEEEEEEEcCCCcchHH-------HHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE
Q psy6566          12 GSNVEEVIWK-NIHFIMWDLGGQQSLRA-------AWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV   83 (126)
Q Consensus        12 ~~~~~~~~~~-~~~~~i~Dt~G~~~~~~-------~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi   83 (126)
                      .......... ...+.+|||+|...+..       ....+++.+|++++++|..+........ +.... ..   .+.|+
T Consensus        33 ~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~-~~---~~~~~  107 (163)
T cd00880          33 DPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELL-RE---RGKPV  107 (163)
T ss_pred             CCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHH-Hh---cCCeE
Confidence            3444555554 78999999999866543       3445788999999999999876665553 22222 22   57899


Q ss_pred             EEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          84 LIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        84 ilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ++++||+|+.......................+++++||+++.
T Consensus       108 ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  150 (163)
T cd00880         108 LLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGE  150 (163)
T ss_pred             EEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccC
Confidence            9999999987653333222111222234456789999999863

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.43  E-value=1.3e-12  Score=81.55  Aligned_cols=112  Identities=22%  Similarity=0.156  Sum_probs=65.6

Q ss_pred             ccCCccCceE--EEEEECCEEEEEEEcCCCc----------chHHHHHhhcc---CCcEEEEEEECCCcccHHHHHHHHH
Q psy6566           6 HTSPTIGSNV--EEVIWKNIHFIMWDLGGQQ----------SLRAAWSTYYT---NTEFVILVIDSTDRERISLTKEELY   70 (126)
Q Consensus         6 ~~~pTi~~~~--~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~~~---~~~~~l~v~d~~~~~~~~~~~~~~~   70 (126)
                      .+.|+.|...  ..+..+ ..+.+|||||..          .+..+...+++   .++++++|+|.+++-+.... ..+ 
T Consensus        46 ~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~-  122 (179)
T TIGR03598        46 RTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EML-  122 (179)
T ss_pred             cccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHH-
Confidence            4556666332  222333 379999999952          23334445555   35799999998875443333 222 


Q ss_pred             HHhCCCCCCCCeEEEEEecCCCCCCCCH----HHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          71 KMLNHEDLSKAAVLIYANKQDIKNSMSP----VEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        71 ~~~~~~~~~~~piilv~nK~D~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ..+..   .+.|+++++||+|+......    .++...+...   ....+++++||++|+
T Consensus       123 ~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~---~~~~~v~~~Sa~~g~  176 (179)
T TIGR03598       123 EWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD---ADDPSVQLFSSLKKT  176 (179)
T ss_pred             HHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc---cCCCceEEEECCCCC
Confidence            23332   46899999999998753211    1222222211   123479999999985

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK11058 GTPase HflX; Provisional

Probab=99.42  E-value=9.1e-12  Score=87.00  Aligned_cols=110  Identities=15%  Similarity=0.105  Sum_probs=69.6

Q ss_pred             CCccCceEEEEEECC-EEEEEEEcCCCcch--HHHHH------hhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566           8 SPTIGSNVEEVIWKN-IHFIMWDLGGQQSL--RAAWS------TYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL   78 (126)
Q Consensus         8 ~pTi~~~~~~~~~~~-~~~~i~Dt~G~~~~--~~~~~------~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~   78 (126)
                      -+|++.....+.+.+ ..+.+|||+|..+.  ...+.      ..++.||++++|+|++++.+++....+ ...+.....
T Consensus       229 ~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v-~~iL~el~~  307 (426)
T PRK11058        229 FATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAV-NTVLEEIDA  307 (426)
T ss_pred             CCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHH-HHHHHHhcc
Confidence            466776667777754 48899999998432  22222      236889999999999998777665432 222222222


Q ss_pred             CCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceE-EEEeeeeeCC
Q psy6566          79 SKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWH-IQSCCALTGE  126 (126)
Q Consensus        79 ~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~  126 (126)
                      .++|+++++||+|+..... ..+...       ..+.+ ++.+||++|+
T Consensus       308 ~~~pvIiV~NKiDL~~~~~-~~~~~~-------~~~~~~~v~ISAktG~  348 (426)
T PRK11058        308 HEIPTLLVMNKIDMLDDFE-PRIDRD-------EENKPIRVWLSAQTGA  348 (426)
T ss_pred             CCCCEEEEEEcccCCCchh-HHHHHH-------hcCCCceEEEeCCCCC
Confidence            4789999999999864311 111111       01222 4789999874

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.42  E-value=5.9e-12  Score=88.37  Aligned_cols=103  Identities=20%  Similarity=0.271  Sum_probs=67.3

Q ss_pred             cCceEEEEEECCEEEEEEEcCCCcc--------hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566          11 IGSNVEEVIWKNIHFIMWDLGGQQS--------LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus        11 i~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      .......+.+.+..+.+|||||++.        +......+++.+|++++|+|+.+..+..+  .++...++.   .+.|
T Consensus        37 ~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~--~~~~~~l~~---~~~p  111 (435)
T PRK00093         37 RDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPAD--EEIAKILRK---SNKP  111 (435)
T ss_pred             ccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCc
Confidence            3355566777889999999999987        33345567889999999999987533322  122233333   3689


Q ss_pred             EEEEEecCCCCCCCCHHHHHhhcCcCcccCCce-EEEEeeeeeCC
Q psy6566          83 VLIYANKQDIKNSMSPVEISNLLDLTSIKKQQW-HIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~  126 (126)
                      +++++||+|+....  ....+...      .++ .++++||++|.
T Consensus       112 iilv~NK~D~~~~~--~~~~~~~~------lg~~~~~~iSa~~g~  148 (435)
T PRK00093        112 VILVVNKVDGPDEE--ADAYEFYS------LGLGEPYPISAEHGR  148 (435)
T ss_pred             EEEEEECccCccch--hhHHHHHh------cCCCCCEEEEeeCCC
Confidence            99999999975421  12222111      122 37899999874

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.41  E-value=2.9e-12  Score=94.56  Aligned_cols=112  Identities=14%  Similarity=0.097  Sum_probs=71.3

Q ss_pred             ccCceEEEEEECCEEEEEEEcCCCcc----------hHHH-HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566          10 TIGSNVEEVIWKNIHFIMWDLGGQQS----------LRAA-WSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL   78 (126)
Q Consensus        10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~-~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~   78 (126)
                      |.+.....+.+++..+.+|||||..+          +..+ ...+++.+|++++|+|+++..+..+.. ++..+..    
T Consensus       485 T~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~----  559 (712)
T PRK09518        485 TRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK-VMSMAVD----  559 (712)
T ss_pred             CcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----
Confidence            44444455667888899999999532          2222 234578999999999999887776654 3433322    


Q ss_pred             CCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          79 SKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        79 ~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .+.|+++++||+|+.+......+..............+++.+||++|.
T Consensus       560 ~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~  607 (712)
T PRK09518        560 AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGW  607 (712)
T ss_pred             cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCCC
Confidence            468999999999997542222222222111111223467899999874

>KOG0082|consensus

Probab=99.41  E-value=1.8e-12  Score=87.49  Aligned_cols=88  Identities=24%  Similarity=0.465  Sum_probs=80.0

Q ss_pred             cCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCC----------cccHHHHHHHHHHHhCCC
Q psy6566           7 TSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD----------RERISLTKEELYKMLNHE   76 (126)
Q Consensus         7 ~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~----------~~~~~~~~~~~~~~~~~~   76 (126)
                      ..||.|+....+.+++..+.+.|+|||...+..|.+++.++++++|++++++          .+...+...+++.+...+
T Consensus       179 R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~  258 (354)
T KOG0082|consen  179 RVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK  258 (354)
T ss_pred             ccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc
Confidence            4689999999999999999999999999999999999999999999999875          356777788899999999


Q ss_pred             CCCCCeEEEEEecCCCCC
Q psy6566          77 DLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~   94 (126)
                      +..+.+++++.||.|+-.
T Consensus       259 ~F~~tsiiLFLNK~DLFe  276 (354)
T KOG0082|consen  259 WFANTSIILFLNKKDLFE  276 (354)
T ss_pred             ccccCcEEEEeecHHHHH
Confidence            999999999999999864

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.40  E-value=3.3e-12  Score=89.61  Aligned_cols=105  Identities=20%  Similarity=0.116  Sum_probs=68.4

Q ss_pred             EEEECCEEEEEEEcCCCcchHH----------H-HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEE
Q psy6566          17 EVIWKNIHFIMWDLGGQQSLRA----------A-WSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLI   85 (126)
Q Consensus        17 ~~~~~~~~~~i~Dt~G~~~~~~----------~-~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piil   85 (126)
                      .+..++..+.+|||||......          . ...+++.+|++++|+|+++..+..+.. ++..+.+    .+.|+++
T Consensus       215 ~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~----~~~~~iv  289 (435)
T PRK00093        215 PFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLR-IAGLALE----AGRALVI  289 (435)
T ss_pred             EEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCcEEE
Confidence            3445888899999999643221          1 124678999999999999876655442 3333322    3689999


Q ss_pred             EEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          86 YANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        86 v~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ++||+|+.......++...+..........+++++||++|.
T Consensus       290 v~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~  330 (435)
T PRK00093        290 VVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQ  330 (435)
T ss_pred             EEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCC
Confidence            99999987432223333333322223345689999999874

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.39  E-value=9.2e-12  Score=91.95  Aligned_cols=96  Identities=21%  Similarity=0.324  Sum_probs=62.2

Q ss_pred             EECCEEEEEEEcCCCcc--------hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecC
Q psy6566          19 IWKNIHFIMWDLGGQQS--------LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQ   90 (126)
Q Consensus        19 ~~~~~~~~i~Dt~G~~~--------~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~   90 (126)
                      .+++..+.+|||||.+.        +......+++.+|++++|+|+++.  +......+...++.   .+.|+++++||+
T Consensus       319 ~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV~NK~  393 (712)
T PRK09518        319 EWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVG--LTSTDERIVRMLRR---AGKPVVLAVNKI  393 (712)
T ss_pred             EECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECc
Confidence            34788999999999763        344556678999999999998763  22222234444443   578999999999


Q ss_pred             CCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          91 DIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        91 D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+....  ..........    .+ ..+++||++|.
T Consensus       394 D~~~~~--~~~~~~~~lg----~~-~~~~iSA~~g~  422 (712)
T PRK09518        394 DDQASE--YDAAEFWKLG----LG-EPYPISAMHGR  422 (712)
T ss_pred             ccccch--hhHHHHHHcC----CC-CeEEEECCCCC
Confidence            986431  1111111111    11 24789999874

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.39  E-value=1.4e-12  Score=94.25  Aligned_cols=104  Identities=14%  Similarity=0.108  Sum_probs=67.2

Q ss_pred             CceEEEEEECCEEEEEEEcCCCcchHHH------HHhhc--cCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE
Q psy6566          12 GSNVEEVIWKNIHFIMWDLGGQQSLRAA------WSTYY--TNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV   83 (126)
Q Consensus        12 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------~~~~~--~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi   83 (126)
                      +.....+..++..+.+|||||+..+...      .+.++  +.+|++++|+|.++.+   +...+..+..+    .+.|+
T Consensus        30 ~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~le---r~l~l~~ql~~----~~~Pi  102 (591)
T TIGR00437        30 EKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLE---RNLYLTLQLLE----LGIPM  102 (591)
T ss_pred             EEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcch---hhHHHHHHHHh----cCCCE
Confidence            3444556668888999999999876542      34443  4799999999988643   23333444432    36899


Q ss_pred             EEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          84 LIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        84 ilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ++++||+|+.+......-.+.    ..+..+++++++||++|+
T Consensus       103 IIVlNK~Dl~~~~~i~~d~~~----L~~~lg~pvv~tSA~tg~  141 (591)
T TIGR00437       103 ILALNLVDEAEKKGIRIDEEK----LEERLGVPVVPTSATEGR  141 (591)
T ss_pred             EEEEehhHHHHhCCChhhHHH----HHHHcCCCEEEEECCCCC
Confidence            999999998643211110111    112335689999999874

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.39  E-value=9.7e-12  Score=80.89  Aligned_cols=80  Identities=20%  Similarity=0.216  Sum_probs=62.4

Q ss_pred             cCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecC
Q psy6566          11 IGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQ   90 (126)
Q Consensus        11 i~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~   90 (126)
                      +......+..++.++.+|||||+..|...+..+++.+|++++|+|.++.... ....++.... .   .++|+++++||+
T Consensus        52 i~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~-~---~~~P~iivvNK~  126 (237)
T cd04168          52 IFSAVASFQWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLR-K---LNIPTIIFVNKI  126 (237)
T ss_pred             eeeeeEEEEECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHH-H---cCCCEEEEEECc
Confidence            3344556666999999999999999999999999999999999999875432 3344454442 2   368999999999


Q ss_pred             CCCCC
Q psy6566          91 DIKNS   95 (126)
Q Consensus        91 D~~~~   95 (126)
                      |+.+.
T Consensus       127 D~~~a  131 (237)
T cd04168         127 DRAGA  131 (237)
T ss_pred             cccCC
Confidence            98764

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.38  E-value=1.3e-11  Score=86.50  Aligned_cols=101  Identities=22%  Similarity=0.307  Sum_probs=67.2

Q ss_pred             ceEEEEEECCEEEEEEEcCCC--------cchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEE
Q psy6566          13 SNVEEVIWKNIHFIMWDLGGQ--------QSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVL   84 (126)
Q Consensus        13 ~~~~~~~~~~~~~~i~Dt~G~--------~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii   84 (126)
                      .....+.+++..+.+|||||.        +.+......+++.+|++++|+|..+..+..+  ..+...++.   .+.|++
T Consensus        37 ~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d--~~i~~~l~~---~~~pii  111 (429)
T TIGR03594        37 RKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPED--EEIAKWLRK---SGKPVI  111 (429)
T ss_pred             ceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHH--HHHHHHHHH---hCCCEE
Confidence            444566668899999999996        4445566777899999999999886433332  223333333   468999


Q ss_pred             EEEecCCCCCCCCHHHHHhhcCcCcccCCce-EEEEeeeeeCC
Q psy6566          85 IYANKQDIKNSMSPVEISNLLDLTSIKKQQW-HIQSCCALTGE  126 (126)
Q Consensus        85 lv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~  126 (126)
                      +++||+|+.....  ...+..      ..++ +++++||++|.
T Consensus       112 lVvNK~D~~~~~~--~~~~~~------~lg~~~~~~vSa~~g~  146 (429)
T TIGR03594       112 LVANKIDGKKEDA--VAAEFY------SLGFGEPIPISAEHGR  146 (429)
T ss_pred             EEEECccCCcccc--cHHHHH------hcCCCCeEEEeCCcCC
Confidence            9999999865321  111111      1122 58999999873

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.38  E-value=5.9e-12  Score=90.84  Aligned_cols=63  Identities=17%  Similarity=0.235  Sum_probs=50.3

Q ss_pred             EEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCC---cccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566          24 HFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD---RERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        24 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~   94 (126)
                      .+.+|||||++.|..++..+++.+|++++|+|+++   +.+++.+.     .++.   .++|+++++||+|+..
T Consensus        70 ~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~-----~l~~---~~vpiIVv~NK~Dl~~  135 (590)
T TIGR00491        70 GLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALN-----ILRM---YKTPFVVAANKIDRIP  135 (590)
T ss_pred             cEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH-----HHHH---cCCCEEEEEECCCccc
Confidence            38899999999999999999999999999999986   34443332     1122   4689999999999864

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.37  E-value=3.4e-12  Score=88.88  Aligned_cols=100  Identities=21%  Similarity=0.165  Sum_probs=64.7

Q ss_pred             CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCH---
Q psy6566          22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSP---   98 (126)
Q Consensus        22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~---   98 (126)
                      +..+.+|||||++.|...+......+|++++|+|+++........+.+..+ +..  ...|+++++||+|+.+....   
T Consensus        79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~--gi~~iIVvvNK~Dl~~~~~~~~~  155 (406)
T TIGR03680        79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EII--GIKNIVIVQNKIDLVSKEKALEN  155 (406)
T ss_pred             ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHc--CCCeEEEEEEccccCCHHHHHHH
Confidence            468999999999999988888888999999999998632112222223222 221  23478999999999753211   


Q ss_pred             -HHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          99 -VEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        99 -~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                       +++...+...  ...+++++++||++|+
T Consensus       156 ~~~i~~~l~~~--~~~~~~ii~vSA~~g~  182 (406)
T TIGR03680       156 YEEIKEFVKGT--VAENAPIIPVSALHNA  182 (406)
T ss_pred             HHHHHhhhhhc--ccCCCeEEEEECCCCC
Confidence             1111111110  1235689999999874

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.36  E-value=7.1e-12  Score=90.97  Aligned_cols=114  Identities=14%  Similarity=0.101  Sum_probs=71.5

Q ss_pred             CCccCceEEEEEE-CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEE
Q psy6566           8 SPTIGSNVEEVIW-KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLI   85 (126)
Q Consensus         8 ~pTi~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iil   85 (126)
                      .+|+...+..+.. ++..+.+|||||++.|.......+.++|++++|+|+++.- .....+.+. +++.   .++| +++
T Consensus        35 GiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~-~~qT~ehl~-il~~---lgi~~iIV  109 (614)
T PRK10512         35 GMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGV-MAQTREHLA-ILQL---TGNPMLTV  109 (614)
T ss_pred             CceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCC-cHHHHHHHH-HHHH---cCCCeEEE
Confidence            5666655555545 5677999999999999777777789999999999987631 122222222 2222   2345 679


Q ss_pred             EEecCCCCCCCCHHHHHhhcCcCcc--cCCceEEEEeeeeeCC
Q psy6566          86 YANKQDIKNSMSPVEISNLLDLTSI--KKQQWHIQSCCALTGE  126 (126)
Q Consensus        86 v~nK~D~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~Sa~~~~  126 (126)
                      ++||+|+.+......+.........  .-...+++.+||++|+
T Consensus       110 VlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~  152 (614)
T PRK10512        110 ALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGR  152 (614)
T ss_pred             EEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCC
Confidence            9999999753222222222111111  1123579999999874

>cd04169 RF3 RF3 subfamily

Probab=99.36  E-value=2e-11  Score=80.72  Aligned_cols=79  Identities=15%  Similarity=0.200  Sum_probs=59.2

Q ss_pred             ceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCC
Q psy6566          13 SNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDI   92 (126)
Q Consensus        13 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~   92 (126)
                      .....+..++.++.+|||||+..|.......++.+|++++|+|+++... .....++... +.   .++|+++++||+|+
T Consensus        61 ~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~-~~---~~~P~iivvNK~D~  135 (267)
T cd04169          61 SSVMQFEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVC-RL---RGIPIITFINKLDR  135 (267)
T ss_pred             EEEEEEeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHH-Hh---cCCCEEEEEECCcc
Confidence            3344666699999999999999998877778999999999999976432 2223334332 22   46899999999998


Q ss_pred             CCCC
Q psy6566          93 KNSM   96 (126)
Q Consensus        93 ~~~~   96 (126)
                      .+..
T Consensus       136 ~~a~  139 (267)
T cd04169         136 EGRD  139 (267)
T ss_pred             CCCC
Confidence            7643

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.36  E-value=1.3e-11  Score=79.51  Aligned_cols=67  Identities=13%  Similarity=0.160  Sum_probs=54.3

Q ss_pred             CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566          22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK   93 (126)
Q Consensus        22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~   93 (126)
                      +..+.+|||||++.|......+++.+|++++|+|+++...... ...+.....    .++|+++++||+|+.
T Consensus        72 ~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~  138 (222)
T cd01885          72 EYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL  138 (222)
T ss_pred             ceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence            7889999999999999999999999999999999987654433 333444432    357999999999976

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.34  E-value=1.6e-11  Score=77.67  Aligned_cols=106  Identities=21%  Similarity=0.185  Sum_probs=67.9

Q ss_pred             EEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEecCCCCC
Q psy6566          16 EEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLIYANKQDIKN   94 (126)
Q Consensus        16 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~   94 (126)
                      ..+..++..+.+.||||...|.......+..+|++++|+|+.+.-. ......+..+ ..   .++| ++++.||+|+..
T Consensus        58 ~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~-~~---~~~~~iIvviNK~D~~~  132 (195)
T cd01884          58 VEYETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPM-PQTREHLLLA-RQ---VGVPYIVVFLNKADMVD  132 (195)
T ss_pred             eEecCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCcEEEEEeCCCCCC
Confidence            3344477899999999999888777777899999999999876422 2223333333 22   3455 789999999864


Q ss_pred             CCC-HHH----HHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          95 SMS-PVE----ISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        95 ~~~-~~~----v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ... .+.    +...+...-.+...++++.+||++|.
T Consensus       133 ~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~  169 (195)
T cd01884         133 DEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKAL  169 (195)
T ss_pred             cHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCcccc
Confidence            211 111    22221111112235789999999873

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.33  E-value=2e-11  Score=85.80  Aligned_cols=113  Identities=18%  Similarity=0.156  Sum_probs=74.2

Q ss_pred             CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccH-------HHHHHHHHHHhCCCCCCCC
Q psy6566           9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERI-------SLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~   81 (126)
                      -|+......+..++..+.+.||||++.|.......+..+|++++|+|+++. .+       ...+.++... +.   .++
T Consensus        71 iTi~~~~~~~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~-~~---~gi  145 (447)
T PLN00043         71 ITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLA-FT---LGV  145 (447)
T ss_pred             ceEEEEEEEecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHH-HH---cCC
Confidence            355555555666889999999999999999888889999999999998862 22       2333433322 22   356


Q ss_pred             -eEEEEEecCCCCC-CCC---HHH----HHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 -AVLIYANKQDIKN-SMS---PVE----ISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 -piilv~nK~D~~~-~~~---~~~----v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                       ++++++||+|+.. ...   .++    +...+...-.....++++++||++|+
T Consensus       146 ~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~  199 (447)
T PLN00043        146 KQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGD  199 (447)
T ss_pred             CcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccc
Confidence             5788999999862 111   122    22222111112235789999999874

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.33  E-value=1.2e-11  Score=85.81  Aligned_cols=112  Identities=21%  Similarity=0.183  Sum_probs=67.4

Q ss_pred             CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE-EEEE
Q psy6566           9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV-LIYA   87 (126)
Q Consensus         9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi-ilv~   87 (126)
                      .|+......+..++..+.+|||||++.|..........+|++++|+|+.+... ....+++..+. .   .++|. ++++
T Consensus        61 ~Ti~~~~~~~~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~-~qt~e~l~~~~-~---~gi~~iIvvv  135 (394)
T TIGR00485        61 ITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPM-PQTREHILLAR-Q---VGVPYIVVFL  135 (394)
T ss_pred             cceeeEEEEEcCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHH-H---cCCCEEEEEE
Confidence            34443333333367889999999999987766666778999999999886322 22233333332 2   24664 4689


Q ss_pred             ecCCCCCCCC-HH----HHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          88 NKQDIKNSMS-PV----EISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        88 nK~D~~~~~~-~~----~v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      ||+|+.+... .+    ++...+.........++++.+||++|
T Consensus       136 NK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g  178 (394)
T TIGR00485       136 NKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKA  178 (394)
T ss_pred             EecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEECccccc
Confidence            9999875311 11    12222111111112378999999876

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=99.32  E-value=6e-12  Score=87.21  Aligned_cols=87  Identities=21%  Similarity=0.378  Sum_probs=74.8

Q ss_pred             cCCccCceEEEEEE-CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCC----------cccHHHHHHHHHHHhCC
Q psy6566           7 TSPTIGSNVEEVIW-KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD----------RERISLTKEELYKMLNH   75 (126)
Q Consensus         7 ~~pTi~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~----------~~~~~~~~~~~~~~~~~   75 (126)
                      ..+|.|+....+.+ ++..+.++|+|||...+..|.+++.++++++||+++++          .+.+.+....+..+...
T Consensus       219 r~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~  298 (389)
T PF00503_consen  219 RVKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNN  298 (389)
T ss_dssp             ----SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTS
T ss_pred             cCCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhC
Confidence            45889999999999 99999999999999999999999999999999999763          35688888899999998


Q ss_pred             CCCCCCeEEEEEecCCCC
Q psy6566          76 EDLSKAAVLIYANKQDIK   93 (126)
Q Consensus        76 ~~~~~~piilv~nK~D~~   93 (126)
                      +...+.|++|++||.|+-
T Consensus       299 ~~~~~~~iil~lnK~D~f  316 (389)
T PF00503_consen  299 PWFKNTPIILFLNKIDLF  316 (389)
T ss_dssp             GGGTTSEEEEEEE-HHHH
T ss_pred             cccccCceEEeeecHHHH
Confidence            888899999999999953

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.31  E-value=4.9e-11  Score=78.93  Aligned_cols=81  Identities=16%  Similarity=0.193  Sum_probs=61.5

Q ss_pred             ccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEec
Q psy6566          10 TIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANK   89 (126)
Q Consensus        10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK   89 (126)
                      |+......+.+++.++.+|||||...|...+...++.+|++++|+|+.+...- .....+... ..   .++|+++++||
T Consensus        51 ti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~-~t~~~~~~~-~~---~~~p~ivviNK  125 (270)
T cd01886          51 TIQSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEP-QTETVWRQA-DR---YNVPRIAFVNK  125 (270)
T ss_pred             CeeccEEEEEECCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCH-HHHHHHHHH-HH---cCCCEEEEEEC
Confidence            44455566777999999999999999999899999999999999998764322 223334333 22   46899999999


Q ss_pred             CCCCCC
Q psy6566          90 QDIKNS   95 (126)
Q Consensus        90 ~D~~~~   95 (126)
                      +|+.+.
T Consensus       126 ~D~~~a  131 (270)
T cd01886         126 MDRTGA  131 (270)
T ss_pred             CCCCCC
Confidence            998753

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.30  E-value=1e-11  Score=76.19  Aligned_cols=88  Identities=17%  Similarity=0.096  Sum_probs=55.9

Q ss_pred             EEEcCCCc-----chHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHH
Q psy6566          27 MWDLGGQQ-----SLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEI  101 (126)
Q Consensus        27 i~Dt~G~~-----~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v  101 (126)
                      +|||||..     .++.+. ..++++|++++|+|+++..++..  .++..+  .   .+.|+++++||+|+.+. ..+.+
T Consensus        41 ~iDtpG~~~~~~~~~~~~~-~~~~~ad~il~v~d~~~~~s~~~--~~~~~~--~---~~~~ii~v~nK~Dl~~~-~~~~~  111 (158)
T PRK15467         41 DIDTPGEYFSHPRWYHALI-TTLQDVDMLIYVHGANDPESRLP--AGLLDI--G---VSKRQIAVISKTDMPDA-DVAAT  111 (158)
T ss_pred             cccCCccccCCHHHHHHHH-HHHhcCCEEEEEEeCCCcccccC--HHHHhc--c---CCCCeEEEEEccccCcc-cHHHH
Confidence            69999972     222222 34789999999999998765532  233332  1   35789999999998653 23333


Q ss_pred             HhhcCcCcccCCceEEEEeeeeeCC
Q psy6566         102 SNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .+.....   ....+++++||++|+
T Consensus       112 ~~~~~~~---~~~~p~~~~Sa~~g~  133 (158)
T PRK15467        112 RKLLLET---GFEEPIFELNSHDPQ  133 (158)
T ss_pred             HHHHHHc---CCCCCEEEEECCCcc
Confidence            3221111   112489999999874

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.30  E-value=2.2e-11  Score=84.94  Aligned_cols=99  Identities=21%  Similarity=0.179  Sum_probs=61.0

Q ss_pred             EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHH---
Q psy6566          23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPV---   99 (126)
Q Consensus        23 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~---   99 (126)
                      ..+.+|||||++.|..........+|++++|+|++++.........+..+ +..  ...|+++++||+|+.+.....   
T Consensus        85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l-~~~--~i~~iiVVlNK~Dl~~~~~~~~~~  161 (411)
T PRK04000         85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMAL-DII--GIKNIVIVQNKIDLVSKERALENY  161 (411)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc--CCCcEEEEEEeeccccchhHHHHH
Confidence            67999999999988776555566789999999998642111122222222 221  224789999999997632211   


Q ss_pred             -HHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566         100 -EISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus       100 -~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                       ++...+...  .....+++++||++|+
T Consensus       162 ~~i~~~l~~~--~~~~~~ii~vSA~~g~  187 (411)
T PRK04000        162 EQIKEFVKGT--VAENAPIIPVSALHKV  187 (411)
T ss_pred             HHHHHHhccc--cCCCCeEEEEECCCCc
Confidence             122111110  1235689999999874

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.30  E-value=3.7e-11  Score=86.88  Aligned_cols=61  Identities=21%  Similarity=0.309  Sum_probs=49.4

Q ss_pred             EEEEEcCCCcchHHHHHhhccCCcEEEEEEECCC---cccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566          25 FIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD---RERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK   93 (126)
Q Consensus        25 ~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~   93 (126)
                      +.+|||||++.|..++...++.+|++++|+|+++   +.+++.+.     .+..   .++|+++++||+|+.
T Consensus        73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~-----~~~~---~~vpiIvviNK~D~~  136 (586)
T PRK04004         73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAIN-----ILKR---RKTPFVVAANKIDRI  136 (586)
T ss_pred             EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH-----HHHH---cCCCEEEEEECcCCc
Confidence            7899999999999999888899999999999986   44444332     1222   468999999999985

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.29  E-value=2.9e-12  Score=79.65  Aligned_cols=81  Identities=30%  Similarity=0.486  Sum_probs=55.4

Q ss_pred             CCEEEEEEEcCCCcchHHHHHh---hccCCcEEEEEEECCC-cccHHHHHHHHHHHhCCCC--CCCCeEEEEEecCCCCC
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWST---YYTNTEFVILVIDSTD-RERISLTKEELYKMLNHED--LSKAAVLIYANKQDIKN   94 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~---~~~~~~~~l~v~d~~~-~~~~~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~   94 (126)
                      .+..+.+.|+||+++.+.....   +...+.++|||+|++. +..+.++.+++..++....  ...+|+++++||+|+..
T Consensus        47 ~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~  126 (181)
T PF09439_consen   47 KGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT  126 (181)
T ss_dssp             CGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred             CCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence            5567999999999998874433   4788999999999874 4456666666766655422  35789999999999987


Q ss_pred             CCCHHHH
Q psy6566          95 SMSPVEI  101 (126)
Q Consensus        95 ~~~~~~v  101 (126)
                      +.....+
T Consensus       127 A~~~~~I  133 (181)
T PF09439_consen  127 AKPPKKI  133 (181)
T ss_dssp             ---HHHH
T ss_pred             cCCHHHH
Confidence            6554443

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.29  E-value=6.8e-12  Score=81.95  Aligned_cols=85  Identities=9%  Similarity=0.074  Sum_probs=62.5

Q ss_pred             cchHHHHHhhccCCcEEEEEEECCCcc-cHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccC
Q psy6566          34 QSLRAAWSTYYTNTEFVILVIDSTDRE-RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKK  112 (126)
Q Consensus        34 ~~~~~~~~~~~~~~~~~l~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~  112 (126)
                      +++..+.+.+++++|++++|+|++++. ++..+.+|+..+ +.   .++|+++++||+||....   ++.......+ ..
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~-~~---~~i~~vIV~NK~DL~~~~---~~~~~~~~~~-~~   95 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVA-EA---QNIEPIIVLNKIDLLDDE---DMEKEQLDIY-RN   95 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEECcccCCCH---HHHHHHHHHH-HH
Confidence            677777888999999999999999887 898888877654 32   578999999999996532   2211111112 23


Q ss_pred             CceEEEEeeeeeCC
Q psy6566         113 QQWHIQSCCALTGE  126 (126)
Q Consensus       113 ~~~~~~~~Sa~~~~  126 (126)
                      .+++++++||++|+
T Consensus        96 ~g~~v~~~SAktg~  109 (245)
T TIGR00157        96 IGYQVLMTSSKNQD  109 (245)
T ss_pred             CCCeEEEEecCCch
Confidence            56789999999874

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.27  E-value=7.5e-11  Score=81.64  Aligned_cols=117  Identities=14%  Similarity=0.113  Sum_probs=72.2

Q ss_pred             CCccCceEEEEEEC-CEEEEEEEcCCCcc-------hHHHHHhhccCCcEEEEEEECC---CcccHHHHHHHHHHHhCC-
Q psy6566           8 SPTIGSNVEEVIWK-NIHFIMWDLGGQQS-------LRAAWSTYYTNTEFVILVIDST---DRERISLTKEELYKMLNH-   75 (126)
Q Consensus         8 ~pTi~~~~~~~~~~-~~~~~i~Dt~G~~~-------~~~~~~~~~~~~~~~l~v~d~~---~~~~~~~~~~~~~~~~~~-   75 (126)
                      .+|.......+.+. ...+.++||||...       .......+++.++++++|+|++   +.+.+++...+..++... 
T Consensus       191 ~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~  270 (390)
T PRK12298        191 FTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYS  270 (390)
T ss_pred             CCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhh
Confidence            35666666666675 45799999999743       1122233578999999999988   445666666665555432 


Q ss_pred             CCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          76 EDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        76 ~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ....+.|+++++||+|+.......+....+...  .....+++.+||++++
T Consensus       271 ~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~--~~~~~~Vi~ISA~tg~  319 (390)
T PRK12298        271 PKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA--LGWEGPVYLISAASGL  319 (390)
T ss_pred             hhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH--hCCCCCEEEEECCCCc
Confidence            223468999999999986532211111111100  0111358999999873

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.27  E-value=4.5e-11  Score=75.37  Aligned_cols=115  Identities=19%  Similarity=0.135  Sum_probs=65.8

Q ss_pred             ccCCccCceEEEEEE-CCEEEEEEEcCCC----------cchHHHHHhhccCC---cEEEEEEECCCcccHHHHHHHHHH
Q psy6566           6 HTSPTIGSNVEEVIW-KNIHFIMWDLGGQ----------QSLRAAWSTYYTNT---EFVILVIDSTDRERISLTKEELYK   71 (126)
Q Consensus         6 ~~~pTi~~~~~~~~~-~~~~~~i~Dt~G~----------~~~~~~~~~~~~~~---~~~l~v~d~~~~~~~~~~~~~~~~   71 (126)
                      .+.||.|.....-.. .+..+.+|||||.          +.+......+++.+   +++++++|...+.....  .++..
T Consensus        52 ~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~  129 (196)
T PRK00454         52 RTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELD--LQMIE  129 (196)
T ss_pred             cccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHH--HHHHH
Confidence            556676643321111 2578999999994          34445555566544   67888899776543322  12222


Q ss_pred             HhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          72 MLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        72 ~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .+..   .+.|+++++||+|+........+..... .........++++||++|+
T Consensus       130 ~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~-~~l~~~~~~~~~~Sa~~~~  180 (196)
T PRK00454        130 WLKE---YGIPVLIVLTKADKLKKGERKKQLKKVR-KALKFGDDEVILFSSLKKQ  180 (196)
T ss_pred             HHHH---cCCcEEEEEECcccCCHHHHHHHHHHHH-HHHHhcCCceEEEEcCCCC
Confidence            3332   4689999999999865321122221111 1111224578999999874

>KOG0090|consensus

Probab=99.27  E-value=1.1e-10  Score=73.53  Aligned_cols=93  Identities=26%  Similarity=0.329  Sum_probs=72.3

Q ss_pred             cccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhcc---CCcEEEEEEECCC-cccHHHHHHHHHHHhCCC--CC
Q psy6566           5 VHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYT---NTEFVILVIDSTD-RERISLTKEELYKMLNHE--DL   78 (126)
Q Consensus         5 ~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~---~~~~~l~v~d~~~-~~~~~~~~~~~~~~~~~~--~~   78 (126)
                      ..+.|.+..+...+.++.....+.|.||+.+.+.....++.   .+-+++||+|+.. +....+..+++..++...  ..
T Consensus        64 ~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~  143 (238)
T KOG0090|consen   64 RGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKK  143 (238)
T ss_pred             cCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhcccc
Confidence            35566677788888888888999999999999998888887   7999999999764 344556666666665554  34


Q ss_pred             CCCeEEEEEecCCCCCCCC
Q psy6566          79 SKAAVLIYANKQDIKNSMS   97 (126)
Q Consensus        79 ~~~piilv~nK~D~~~~~~   97 (126)
                      +.+|++++|||.|+....+
T Consensus       144 ~~~~vLIaCNKqDl~tAkt  162 (238)
T KOG0090|consen  144 NKPPVLIACNKQDLFTAKT  162 (238)
T ss_pred             CCCCEEEEecchhhhhcCc
Confidence            6789999999999876543

>PRK00089 era GTPase Era; Reviewed

Probab=99.26  E-value=1.2e-10  Score=77.88  Aligned_cols=98  Identities=20%  Similarity=0.277  Sum_probs=61.3

Q ss_pred             CCEEEEEEEcCCCcchH--------HHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCC
Q psy6566          21 KNIHFIMWDLGGQQSLR--------AAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDI   92 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~--------~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~   92 (126)
                      ++..+.+|||||.....        ......+..+|++++|+|+++.  +.....++...+..   .+.|+++++||+|+
T Consensus        51 ~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~--~~~~~~~i~~~l~~---~~~pvilVlNKiDl  125 (292)
T PRK00089         51 DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEK--IGPGDEFILEKLKK---VKTPVILVLNKIDL  125 (292)
T ss_pred             CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCC--CChhHHHHHHHHhh---cCCCEEEEEECCcC
Confidence            66899999999974432        2334457899999999999873  22222334344333   46899999999999


Q ss_pred             CCC-CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          93 KNS-MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        93 ~~~-~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ... .........+..   ......++.+||++|.
T Consensus       126 ~~~~~~l~~~~~~l~~---~~~~~~i~~iSA~~~~  157 (292)
T PRK00089        126 VKDKEELLPLLEELSE---LMDFAEIVPISALKGD  157 (292)
T ss_pred             CCCHHHHHHHHHHHHh---hCCCCeEEEecCCCCC
Confidence            732 111222222211   1123468999999873

>cd04163 Era Era subfamily

Probab=99.25  E-value=1.2e-10  Score=70.98  Aligned_cols=98  Identities=21%  Similarity=0.269  Sum_probs=61.4

Q ss_pred             CCEEEEEEEcCCCcchHH--------HHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCC
Q psy6566          21 KNIHFIMWDLGGQQSLRA--------AWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDI   92 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~--------~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~   92 (126)
                      .+..+.+|||+|......        .....+..++++++++|++++.  .....++...+..   .+.|+++++||+|+
T Consensus        49 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~--~~~~~~~~~~~~~---~~~~~iiv~nK~Dl  123 (168)
T cd04163          49 DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPI--GEGDEFILELLKK---SKTPVILVLNKIDL  123 (168)
T ss_pred             CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCcc--CchHHHHHHHHHH---hCCCEEEEEEchhc
Confidence            668899999999765432        3344578899999999998762  2222233333332   25799999999998


Q ss_pred             CC-CCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          93 KN-SMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        93 ~~-~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .. .....+......   ......+++++|++++.
T Consensus       124 ~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~  155 (168)
T cd04163         124 VKDKEDLLPLLEKLK---ELGPFAEIFPISALKGE  155 (168)
T ss_pred             cccHHHHHHHHHHHH---hccCCCceEEEEeccCC
Confidence            74 211122222221   11223578999998763

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK13351 elongation factor G; Reviewed

Probab=99.25  E-value=1.2e-10  Score=86.01  Aligned_cols=84  Identities=17%  Similarity=0.167  Sum_probs=68.4

Q ss_pred             cCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEE
Q psy6566           7 TSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIY   86 (126)
Q Consensus         7 ~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv   86 (126)
                      +.+|++.....+.+++..+.+|||||+..|...+..+++.+|++++|+|.++....... ..|..+ ..   .++|++++
T Consensus        57 r~~ti~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~~~-~~---~~~p~iiv  131 (687)
T PRK13351         57 RGITIESAATSCDWDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWRQA-DR---YGIPRLIF  131 (687)
T ss_pred             cCCCcccceEEEEECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHH-Hh---cCCCEEEE
Confidence            56788877778888999999999999999999999999999999999999876555433 334433 22   36899999


Q ss_pred             EecCCCCCC
Q psy6566          87 ANKQDIKNS   95 (126)
Q Consensus        87 ~nK~D~~~~   95 (126)
                      +||+|+...
T Consensus       132 iNK~D~~~~  140 (687)
T PRK13351        132 INKMDRVGA  140 (687)
T ss_pred             EECCCCCCC
Confidence            999998864

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.24  E-value=1.7e-10  Score=87.43  Aligned_cols=62  Identities=19%  Similarity=0.307  Sum_probs=48.8

Q ss_pred             EEEEEcCCCcchHHHHHhhccCCcEEEEEEECCC---cccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566          25 FIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD---RERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        25 ~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~   94 (126)
                      +.||||||++.|..+....+..+|++++|+|+++   +.+++.+.    . ++.   .++|+++++||+|+..
T Consensus       528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~-lk~---~~iPiIVViNKiDL~~  592 (1049)
T PRK14845        528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN----I-LRQ---YKTPFVVAANKIDLIP  592 (1049)
T ss_pred             EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH----H-HHH---cCCCEEEEEECCCCcc
Confidence            8999999999999988888899999999999986   33333332    2 222   3579999999999853

>KOG0462|consensus

Probab=99.24  E-value=1e-10  Score=82.31  Aligned_cols=99  Identities=16%  Similarity=0.125  Sum_probs=71.8

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHH
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVE  100 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~  100 (126)
                      +...+.++||||+-.|.....+.+.-|+|+++|+|+++--..+-...++..+ +    .+..+|.|.||+|++.+. .+.
T Consensus       123 ~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAf-e----~~L~iIpVlNKIDlp~ad-pe~  196 (650)
T KOG0462|consen  123 QSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAF-E----AGLAIIPVLNKIDLPSAD-PER  196 (650)
T ss_pred             CceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHH-H----cCCeEEEeeeccCCCCCC-HHH
Confidence            3488999999999999999999999999999999998754444444434333 3    468889999999998853 344


Q ss_pred             HHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566         101 ISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus       101 v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +.......+. ...-+++.+|||+|.
T Consensus       197 V~~q~~~lF~-~~~~~~i~vSAK~G~  221 (650)
T KOG0462|consen  197 VENQLFELFD-IPPAEVIYVSAKTGL  221 (650)
T ss_pred             HHHHHHHHhc-CCccceEEEEeccCc
Confidence            4433332222 122378999999983

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.23  E-value=3.3e-11  Score=77.87  Aligned_cols=87  Identities=17%  Similarity=0.310  Sum_probs=57.1

Q ss_pred             ccCCccCceEEEEEE-CCEEEEEEEcCCCcchHH-----HHHhhccCCcEEEEEEECCCcccHHHHH---HHHHHHhCCC
Q psy6566           6 HTSPTIGSNVEEVIW-KNIHFIMWDLGGQQSLRA-----AWSTYYTNTEFVILVIDSTDRERISLTK---EELYKMLNHE   76 (126)
Q Consensus         6 ~~~pTi~~~~~~~~~-~~~~~~i~Dt~G~~~~~~-----~~~~~~~~~~~~l~v~d~~~~~~~~~~~---~~~~~~~~~~   76 (126)
                      ...||+.+....+.+ ..+.+++||+|||..+-.     ..+..++++.++|||+|+.+.+-.+++.   ..+..+.+.+
T Consensus        30 ~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s  109 (232)
T PF04670_consen   30 RLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYS  109 (232)
T ss_dssp             G-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHS
T ss_pred             ccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhC
Confidence            456899999888887 778999999999976543     3677799999999999998544333332   2233333322


Q ss_pred             CCCCCeEEEEEecCCCCC
Q psy6566          77 DLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~   94 (126)
                        +++.+-++.+|+|+..
T Consensus       110 --p~~~v~vfiHK~D~l~  125 (232)
T PF04670_consen  110 --PNIKVFVFIHKMDLLS  125 (232)
T ss_dssp             --TT-EEEEEEE-CCCS-
T ss_pred             --CCCeEEEEEeecccCC
Confidence              7899999999999865

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.23  E-value=1.6e-10  Score=74.66  Aligned_cols=74  Identities=18%  Similarity=0.143  Sum_probs=51.9

Q ss_pred             EEEECCEEEEEEEcCCCcchHHHHHhhcc--CCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566          17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYT--NTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        17 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~--~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~   94 (126)
                      .+..++..+.+.||||++.|.......+.  .+|++++|+|+..... .....++..+ ..   .++|++++.||+|+.+
T Consensus        78 ~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l-~~---~~ip~ivvvNK~D~~~  152 (224)
T cd04165          78 ICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLA-LA---LNIPVFVVVTKIDLAP  152 (224)
T ss_pred             eeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCEEEEEECccccC
Confidence            34447789999999999998765544453  6899999999876432 2223333333 22   4689999999999865


Q ss_pred             C
Q psy6566          95 S   95 (126)
Q Consensus        95 ~   95 (126)
                      .
T Consensus       153 ~  153 (224)
T cd04165         153 A  153 (224)
T ss_pred             H
Confidence            3

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.23  E-value=9.2e-11  Score=83.10  Aligned_cols=114  Identities=17%  Similarity=0.127  Sum_probs=69.1

Q ss_pred             CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEe
Q psy6566           9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYAN   88 (126)
Q Consensus         9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n   88 (126)
                      -|+......+..++.++.++||||++.|.......++.+|++++|+|+.+...- .....+. +....  ...|+++++|
T Consensus        93 iTid~~~~~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~-qt~~~~~-l~~~l--g~~~iIvvvN  168 (474)
T PRK05124         93 ITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLD-QTRRHSF-IATLL--GIKHLVVAVN  168 (474)
T ss_pred             CCeEeeEEEeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccc-cchHHHH-HHHHh--CCCceEEEEE
Confidence            345555555666888999999999999876555557999999999998753211 1111111 11111  2247899999


Q ss_pred             cCCCCCCCC--HHHHHhhcCc---CcccCCceEEEEeeeeeCC
Q psy6566          89 KQDIKNSMS--PVEISNLLDL---TSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        89 K~D~~~~~~--~~~v~~~~~~---~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+|+.+...  ..++...+..   ........+++.+||++|+
T Consensus       169 KiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~  211 (474)
T PRK05124        169 KMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGD  211 (474)
T ss_pred             eeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCC
Confidence            999874211  1222222211   0000124689999999874

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.23  E-value=1.9e-10  Score=84.90  Aligned_cols=82  Identities=17%  Similarity=0.201  Sum_probs=62.6

Q ss_pred             CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEe
Q psy6566           9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYAN   88 (126)
Q Consensus         9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n   88 (126)
                      .|+......+.+++.++.+|||||+..+...+...++.+|++++|+|+.+...... ...+..+ ..   .++|+++++|
T Consensus        61 iti~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~-~~---~~~p~ivviN  135 (689)
T TIGR00484        61 ITITSAATTVFWKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQS-ETVWRQA-NR---YEVPRIAFVN  135 (689)
T ss_pred             CCEecceEEEEECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhH-HHHHHHH-HH---cCCCEEEEEE
Confidence            34445556677799999999999999998888889999999999999987544332 2334333 22   3689999999


Q ss_pred             cCCCCCC
Q psy6566          89 KQDIKNS   95 (126)
Q Consensus        89 K~D~~~~   95 (126)
                      |+|+.+.
T Consensus       136 K~D~~~~  142 (689)
T TIGR00484       136 KMDKTGA  142 (689)
T ss_pred             CCCCCCC
Confidence            9999764

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.22  E-value=3.4e-10  Score=79.50  Aligned_cols=107  Identities=18%  Similarity=0.177  Sum_probs=75.4

Q ss_pred             cCceEEEEEEC---CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCC---cccHHHHHHHHHHHhCCCCCCCCeEE
Q psy6566          11 IGSNVEEVIWK---NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD---RERISLTKEELYKMLNHEDLSKAAVL   84 (126)
Q Consensus        11 i~~~~~~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~pii   84 (126)
                      .++..+.+.+.   ...+.|.||||++-|..++..-..-+|.+++|+|+++   |.+.+.+.    .. +.   .+.|++
T Consensus        40 QhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~----ha-k~---a~vP~i  111 (509)
T COG0532          40 QHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAIN----HA-KA---AGVPIV  111 (509)
T ss_pred             eEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHH----HH-HH---CCCCEE
Confidence            33455556653   3689999999999999999888888999999999987   34444332    12 22   579999


Q ss_pred             EEEecCCCCCCCCHHHHHhhcCcCcc----cCCceEEEEeeeeeCC
Q psy6566          85 IYANKQDIKNSMSPVEISNLLDLTSI----KKQQWHIQSCCALTGE  126 (126)
Q Consensus        85 lv~nK~D~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~Sa~~~~  126 (126)
                      +..||+|..+. ++..+...+...-.    -.+...++.+||++|+
T Consensus       112 VAiNKiDk~~~-np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~  156 (509)
T COG0532         112 VAINKIDKPEA-NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE  156 (509)
T ss_pred             EEEecccCCCC-CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence            99999999864 34444333322211    2244789999999985

>cd04167 Snu114p Snu114p subfamily

Probab=99.22  E-value=1.8e-10  Score=73.84  Aligned_cols=67  Identities=15%  Similarity=0.160  Sum_probs=53.0

Q ss_pred             CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566          22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK   93 (126)
Q Consensus        22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~   93 (126)
                      ...+.+|||||++.|......+++.+|++++|+|+++..+... ..++.....    .+.|+++++||+|+.
T Consensus        70 ~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~  136 (213)
T cd04167          70 SYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL  136 (213)
T ss_pred             EEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence            4789999999999998888889999999999999987655432 333333322    348999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.22  E-value=7.7e-11  Score=82.12  Aligned_cols=114  Identities=17%  Similarity=0.137  Sum_probs=70.3

Q ss_pred             CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEe
Q psy6566           9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYAN   88 (126)
Q Consensus         9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n   88 (126)
                      -|+......+..++.++.++||||++.|.......+..+|++++|+|+.+... ......+... ...  ...+++++.|
T Consensus        66 iTid~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~-~qt~~~~~~~-~~~--~~~~iivviN  141 (406)
T TIGR02034        66 ITIDVAYRYFSTDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVL-EQTRRHSYIA-SLL--GIRHVVLAVN  141 (406)
T ss_pred             cCeEeeeEEEccCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-cccHHHHHHH-HHc--CCCcEEEEEE
Confidence            35555556666688899999999999997766667889999999999875321 1122222222 221  2346889999


Q ss_pred             cCCCCCCCC--HHHHHhhcCcC--cccCCceEEEEeeeeeCC
Q psy6566          89 KQDIKNSMS--PVEISNLLDLT--SIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        89 K~D~~~~~~--~~~v~~~~~~~--~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+|+.....  ..++...+...  ......++++.+||++|+
T Consensus       142 K~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~  183 (406)
T TIGR02034       142 KMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGD  183 (406)
T ss_pred             ecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCC
Confidence            999865211  11122221100  001124679999999874

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.22  E-value=3.2e-10  Score=73.65  Aligned_cols=52  Identities=17%  Similarity=0.224  Sum_probs=40.1

Q ss_pred             CccCceEEEEEECCEEEEEEEcCCCcchH-------HHHHhhccCCcEEEEEEECCCcc
Q psy6566           9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLR-------AAWSTYYTNTEFVILVIDSTDRE   60 (126)
Q Consensus         9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~~~~l~v~d~~~~~   60 (126)
                      +|+......+.+++..+++|||||.....       .....+++.++++++|+|++++.
T Consensus        33 tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~   91 (233)
T cd01896          33 TTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKPE   91 (233)
T ss_pred             ccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcch
Confidence            46666677778899999999999974322       23455789999999999988754

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.21  E-value=2.3e-10  Score=81.87  Aligned_cols=77  Identities=14%  Similarity=0.218  Sum_probs=58.9

Q ss_pred             eEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566          14 NVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK   93 (126)
Q Consensus        14 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~   93 (126)
                      ....+..++..+.+|||||+..|......+++.+|++++|+|+++... .....++... +.   .++|+++++||+|+.
T Consensus        70 ~~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~-~~---~~iPiiv~iNK~D~~  144 (526)
T PRK00741         70 SVMQFPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVE-PQTRKLMEVC-RL---RDTPIFTFINKLDRD  144 (526)
T ss_pred             eeEEEEECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCC-HHHHHHHHHH-Hh---cCCCEEEEEECCccc
Confidence            334566689999999999999998877778999999999999986432 2233444333 22   478999999999987


Q ss_pred             CC
Q psy6566          94 NS   95 (126)
Q Consensus        94 ~~   95 (126)
                      ..
T Consensus       145 ~a  146 (526)
T PRK00741        145 GR  146 (526)
T ss_pred             cc
Confidence            64

>PRK12736 elongation factor Tu; Reviewed

Probab=99.21  E-value=1.2e-10  Score=80.86  Aligned_cols=111  Identities=20%  Similarity=0.196  Sum_probs=68.0

Q ss_pred             ccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEe
Q psy6566          10 TIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLIYAN   88 (126)
Q Consensus        10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~n   88 (126)
                      |+......+..++..+.++||||++.|..........+|++++|+|+.+... .....++..+. .   .++| +++++|
T Consensus        62 T~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~-~---~g~~~~IvviN  136 (394)
T PRK12736         62 TINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLAR-Q---VGVPYLVVFLN  136 (394)
T ss_pred             cEEEEeeEecCCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHH-H---cCCCEEEEEEE
Confidence            3433333333367789999999999887766666788999999999876322 22333333332 2   3567 678999


Q ss_pred             cCCCCCCCCH-H----HHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          89 KQDIKNSMSP-V----EISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        89 K~D~~~~~~~-~----~v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      |+|+.+.... +    ++...+..........+++.+||++|
T Consensus       137 K~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g  178 (394)
T PRK12736        137 KVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKA  178 (394)
T ss_pred             ecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeecccc
Confidence            9998642211 1    12121111111122468999999986

>KOG1145|consensus

Probab=99.19  E-value=5.2e-10  Score=78.98  Aligned_cols=106  Identities=19%  Similarity=0.219  Sum_probs=75.5

Q ss_pred             CceEEEEEE-CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCc---ccHHHHHHHHHHHhCCCCCCCCeEEEEE
Q psy6566          12 GSNVEEVIW-KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR---ERISLTKEELYKMLNHEDLSKAAVLIYA   87 (126)
Q Consensus        12 ~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~piilv~   87 (126)
                      ++....+.+ .+..+.|.||||+.-|..|+.+-..-+|.+++|+.+.+.   .+.+.+    ... +   ..+.|+++..
T Consensus       189 hIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaI----khA-k---~A~VpiVvAi  260 (683)
T KOG1145|consen  189 HIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAI----KHA-K---SANVPIVVAI  260 (683)
T ss_pred             eeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHH----HHH-H---hcCCCEEEEE
Confidence            344444455 789999999999999999999888899999999987763   333332    222 1   2689999999


Q ss_pred             ecCCCCCCCCHHHHHhhcCcCcc----cCCceEEEEeeeeeCC
Q psy6566          88 NKQDIKNSMSPVEISNLLDLTSI----KKQQWHIQSCCALTGE  126 (126)
Q Consensus        88 nK~D~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~Sa~~~~  126 (126)
                      ||+|.++. +++.+...+...-.    -....+++.+||++|+
T Consensus       261 nKiDkp~a-~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~  302 (683)
T KOG1145|consen  261 NKIDKPGA-NPEKVKRELLSQGIVVEDLGGDVQVIPISALTGE  302 (683)
T ss_pred             eccCCCCC-CHHHHHHHHHHcCccHHHcCCceeEEEeecccCC
Confidence            99998764 44555444332211    2245789999999985

>PRK12735 elongation factor Tu; Reviewed

Probab=99.19  E-value=3.3e-10  Score=78.79  Aligned_cols=103  Identities=19%  Similarity=0.198  Sum_probs=64.3

Q ss_pred             EEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEE-EEEecCCCCCCC
Q psy6566          18 VIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVL-IYANKQDIKNSM   96 (126)
Q Consensus        18 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~D~~~~~   96 (126)
                      +..++..+.++||||++.|.......+..+|++++|+|+.+.. ......++..+ ..   .++|.+ +++||+|+.+..
T Consensus        70 ~~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~-~~qt~e~l~~~-~~---~gi~~iivvvNK~Dl~~~~  144 (396)
T PRK12735         70 YETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGP-MPQTREHILLA-RQ---VGVPYIVVFLNKCDMVDDE  144 (396)
T ss_pred             EcCCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCC-chhHHHHHHHH-HH---cCCCeEEEEEEecCCcchH
Confidence            3336778999999999988776666788999999999987632 22233334333 22   357755 679999997421


Q ss_pred             C-HH----HHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          97 S-PV----EISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        97 ~-~~----~v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      . .+    ++...+.........++++.+||++|
T Consensus       145 ~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g  178 (396)
T PRK12735        145 ELLELVEMEVRELLSKYDFPGDDTPIIRGSALKA  178 (396)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcCceeEEecchhcc
Confidence            1 11    12111111101112478999999987

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.19  E-value=4.7e-10  Score=77.85  Aligned_cols=106  Identities=17%  Similarity=0.145  Sum_probs=72.5

Q ss_pred             cCCccCceEEEEEECCEEEEEEEcCCCcchHHHH--------HhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566           7 TSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAW--------STYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL   78 (126)
Q Consensus         7 ~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~   78 (126)
                      ..+|-++-...+.++++.+.+.||+|.+.-....        ...++.||.+++|+|.+.+.+-.+... +. .    ..
T Consensus       249 ~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~-~~-~----~~  322 (454)
T COG0486         249 AGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLAL-IE-L----LP  322 (454)
T ss_pred             CCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHH-HH-h----cc
Confidence            4466667788899999999999999976543322        234789999999999998533222221 11 1    12


Q ss_pred             CCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          79 SKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        79 ~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .+.|+++|.||.|+........+ +       ...+.+++.+||++|+
T Consensus       323 ~~~~~i~v~NK~DL~~~~~~~~~-~-------~~~~~~~i~iSa~t~~  362 (454)
T COG0486         323 KKKPIIVVLNKADLVSKIELESE-K-------LANGDAIISISAKTGE  362 (454)
T ss_pred             cCCCEEEEEechhcccccccchh-h-------ccCCCceEEEEecCcc
Confidence            57899999999999875432222 1       1123368999999874

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.17  E-value=3.5e-10  Score=79.65  Aligned_cols=114  Identities=19%  Similarity=0.148  Sum_probs=73.4

Q ss_pred             CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCccc---H---HHHHHHHHHHhCCCCCCCCe
Q psy6566           9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER---I---SLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~p   82 (126)
                      -|+......+..++..+.+.||||++.|.......+..+|++++|+|+++...   +   ...++.+..+ ..   .++|
T Consensus        71 iTid~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~-~~---~gi~  146 (446)
T PTZ00141         71 ITIDIALWKFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLA-FT---LGVK  146 (446)
T ss_pred             EeEEeeeEEEccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHH-HH---cCCC
Confidence            34455555566688999999999999998888778899999999999875320   0   2333334333 22   3555


Q ss_pred             -EEEEEecCCCCC----CCCHHHHHhhc----CcCcccCCceEEEEeeeeeCC
Q psy6566          83 -VLIYANKQDIKN----SMSPVEISNLL----DLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        83 -iilv~nK~D~~~----~~~~~~v~~~~----~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                       ++++.||+|...    +...+++...+    .....+...++++.+||.+|+
T Consensus       147 ~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~  199 (446)
T PTZ00141        147 QMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGD  199 (446)
T ss_pred             eEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCC
Confidence             779999999532    11222222222    211112335889999999874

>TIGR00503 prfC peptide chain release factor 3

Probab=99.17  E-value=2.9e-10  Score=81.40  Aligned_cols=74  Identities=14%  Similarity=0.190  Sum_probs=56.3

Q ss_pred             EEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566          16 EEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        16 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~   94 (126)
                      ..+..++..+.+|||||+..|.......++.+|++++|+|+++.- ......++. ..+.   .++|+++++||+|+..
T Consensus        73 ~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~-~~~~---~~~PiivviNKiD~~~  146 (527)
T TIGR00503        73 MQFPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLME-VTRL---RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             EEEeeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHH-HHHh---cCCCEEEEEECccccC
Confidence            445558999999999999998887777899999999999987631 222333343 3333   4689999999999865

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.15  E-value=3.4e-10  Score=84.10  Aligned_cols=106  Identities=17%  Similarity=0.181  Sum_probs=67.5

Q ss_pred             ccCceEEEEEECCEEEEEEEcCCCcchHH----------HHHhhc--cCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566          10 TIGSNVEEVIWKNIHFIMWDLGGQQSLRA----------AWSTYY--TNTEFVILVIDSTDRERISLTKEELYKMLNHED   77 (126)
Q Consensus        10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~~~--~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~   77 (126)
                      |++.....+..++..+.+|||||...+..          ....++  +.+|++++|+|.++.+.   ...++.++.+   
T Consensus        37 Tve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler---~l~l~~ql~e---  110 (772)
T PRK09554         37 TVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLER---NLYLTLQLLE---  110 (772)
T ss_pred             eEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchh---hHHHHHHHHH---
Confidence            33333344555888999999999876532          122333  47999999999987543   3344555543   


Q ss_pred             CCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          78 LSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                       .++|+++++||+|+.+......-.+.+    .+..+++++.+||++|+
T Consensus       111 -~giPvIvVlNK~Dl~~~~~i~id~~~L----~~~LG~pVvpiSA~~g~  154 (772)
T PRK09554        111 -LGIPCIVALNMLDIAEKQNIRIDIDAL----SARLGCPVIPLVSTRGR  154 (772)
T ss_pred             -cCCCEEEEEEchhhhhccCcHHHHHHH----HHHhCCCEEEEEeecCC
Confidence             368999999999986432211111111    12345689999999874

>PLN03126 Elongation factor Tu; Provisional

Probab=99.13  E-value=4e-10  Score=79.86  Aligned_cols=106  Identities=22%  Similarity=0.198  Sum_probs=69.2

Q ss_pred             EEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEecCCCC
Q psy6566          15 VEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLIYANKQDIK   93 (126)
Q Consensus        15 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~   93 (126)
                      ...+..++..+.++||||++.|-......+..+|++++|+|+.+.. .....+++..+ ..   .++| ++++.||+|+.
T Consensus       136 ~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~-~~qt~e~~~~~-~~---~gi~~iIvvvNK~Dl~  210 (478)
T PLN03126        136 TVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGP-MPQTKEHILLA-KQ---VGVPNMVVFLNKQDQV  210 (478)
T ss_pred             EEEEecCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCC-cHHHHHHHHHH-HH---cCCCeEEEEEeccccc
Confidence            3344457889999999999999877777788999999999988643 22334444433 22   3567 78899999987


Q ss_pred             CCCC-HHHH----HhhcCcCcccCCceEEEEeeeeeC
Q psy6566          94 NSMS-PVEI----SNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        94 ~~~~-~~~v----~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      +... .+.+    ...+...-.....++++.+||.+|
T Consensus       211 ~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g  247 (478)
T PLN03126        211 DDEELLELVELEVRELLSSYEFPGDDIPIISGSALLA  247 (478)
T ss_pred             CHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEcccc
Confidence            5211 1112    222211111224678999999876

>CHL00071 tufA elongation factor Tu

Probab=99.13  E-value=6.3e-10  Score=77.68  Aligned_cols=105  Identities=22%  Similarity=0.224  Sum_probs=67.2

Q ss_pred             EEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEecCCCCCC
Q psy6566          17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLIYANKQDIKNS   95 (126)
Q Consensus        17 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~   95 (126)
                      .+..++..+.+.||||+..|.......+..+|++++|+|+.+.- .......+..+ ..   .++| ++++.||+|+.+.
T Consensus        69 ~~~~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~-~~qt~~~~~~~-~~---~g~~~iIvvvNK~D~~~~  143 (409)
T CHL00071         69 EYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGP-MPQTKEHILLA-KQ---VGVPNIVVFLNKEDQVDD  143 (409)
T ss_pred             EEccCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCC-cHHHHHHHHHH-HH---cCCCEEEEEEEccCCCCH
Confidence            34447788999999999988777666788999999999987532 22333334333 22   3567 7789999999753


Q ss_pred             CC-HH----HHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          96 MS-PV----EISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        96 ~~-~~----~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .. .+    ++...+.........++++.+||++|+
T Consensus       144 ~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~  179 (409)
T CHL00071        144 EELLELVELEVRELLSKYDFPGDDIPIVSGSALLAL  179 (409)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcc
Confidence            21 11    122222111112234789999998873

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.13  E-value=4.5e-10  Score=68.45  Aligned_cols=105  Identities=20%  Similarity=0.223  Sum_probs=68.9

Q ss_pred             cCCccCceEEEEEECCEEEEEEEcCCCcc------hHHHHHhhc--cCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566           7 TSPTIGSNVEEVIWKNIHFIMWDLGGQQS------LRAAWSTYY--TNTEFVILVIDSTDRERISLTKEELYKMLNHEDL   78 (126)
Q Consensus         7 ~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~------~~~~~~~~~--~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~   78 (126)
                      ...|++.....+.+++..+.+.|+||.-.      .......++  +..|+++.|+|+++   ++.......++++.   
T Consensus        31 pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~---l~r~l~l~~ql~e~---  104 (156)
T PF02421_consen   31 PGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATN---LERNLYLTLQLLEL---  104 (156)
T ss_dssp             TTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG---HHHHHHHHHHHHHT---
T ss_pred             CCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC---HHHHHHHHHHHHHc---
Confidence            34677777788888999999999999422      233444444  68999999999876   44444555555543   


Q ss_pred             CCCeEEEEEecCCCCCCC----CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          79 SKAAVLIYANKQDIKNSM----SPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        79 ~~~piilv~nK~D~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                       ++|++++.||+|.....    ..+.+.+.+        +++++.+||++|+
T Consensus       105 -g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L--------g~pvi~~sa~~~~  147 (156)
T PF02421_consen  105 -GIPVVVVLNKMDEAERKGIEIDAEKLSERL--------GVPVIPVSARTGE  147 (156)
T ss_dssp             -TSSEEEEEETHHHHHHTTEEE-HHHHHHHH--------TS-EEEEBTTTTB
T ss_pred             -CCCEEEEEeCHHHHHHcCCEECHHHHHHHh--------CCCEEEEEeCCCc
Confidence             69999999999975421    223343333        5689999999874

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.12  E-value=8.1e-10  Score=76.48  Aligned_cols=113  Identities=19%  Similarity=0.145  Sum_probs=75.2

Q ss_pred             CccCceEEEEEECCEEEEEEEcCCCcchHHHH-----------HhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566           9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAW-----------STYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED   77 (126)
Q Consensus         9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-----------~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~   77 (126)
                      +|.+.-...++.++.++.+.||+|..+-....           ...+..++.+++|+|++++-+-++.+  +..+...  
T Consensus       212 TTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~--ia~~i~~--  287 (444)
T COG1160         212 TTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLR--IAGLIEE--  287 (444)
T ss_pred             ccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHH--HHHHHHH--
Confidence            34444444556689999999999965533221           23367899999999998875544443  3333334  


Q ss_pred             CCCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          78 LSKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                       .+.+++++.||+|+...  ...++....+...+......+.+.+||++|.
T Consensus       288 -~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~  337 (444)
T COG1160         288 -AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQ  337 (444)
T ss_pred             -cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCC
Confidence             57899999999998764  3344444444433334455689999999873

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.12  E-value=4.2e-10  Score=82.40  Aligned_cols=114  Identities=17%  Similarity=0.135  Sum_probs=69.2

Q ss_pred             CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEe
Q psy6566           9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYAN   88 (126)
Q Consensus         9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n   88 (126)
                      -|+......+..++.++.++||||++.|.......+..+|++++|+|+.+... ......+..+ ...  ...+++++.|
T Consensus        90 ~Tid~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~-~~t~e~~~~~-~~~--~~~~iivvvN  165 (632)
T PRK05506         90 ITIDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVL-TQTRRHSFIA-SLL--GIRHVVLAVN  165 (632)
T ss_pred             cCceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcc-ccCHHHHHHH-HHh--CCCeEEEEEE
Confidence            34555555666688899999999999887665566889999999999875321 1111222212 111  2357899999


Q ss_pred             cCCCCCCC--CHHHHHhhcCcC--cccCCceEEEEeeeeeCC
Q psy6566          89 KQDIKNSM--SPVEISNLLDLT--SIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        89 K~D~~~~~--~~~~v~~~~~~~--~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+|+.+..  ...++...+...  ...-...+++.+||++|+
T Consensus       166 K~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~  207 (632)
T PRK05506        166 KMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGD  207 (632)
T ss_pred             ecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCC
Confidence            99986421  112222221100  001123578999999874

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.11  E-value=1.5e-09  Score=71.82  Aligned_cols=83  Identities=14%  Similarity=0.232  Sum_probs=63.2

Q ss_pred             CCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEE
Q psy6566           8 SPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYA   87 (126)
Q Consensus         8 ~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~   87 (126)
                      .+|+......+.+++..+.+|||||...|...+...++.+|++++|+|+++..... ....+..+ ..   .++|.++++
T Consensus        49 ~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~-~~~~~~~~-~~---~~~p~iivv  123 (268)
T cd04170          49 KMSISTSVAPLEWKGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVG-TEKLWEFA-DE---AGIPRIIFI  123 (268)
T ss_pred             cccccceeEEEEECCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHH-HHHHHHHH-HH---cCCCEEEEE
Confidence            34555555667778999999999999988888888999999999999998754443 22333333 22   468999999


Q ss_pred             ecCCCCCC
Q psy6566          88 NKQDIKNS   95 (126)
Q Consensus        88 nK~D~~~~   95 (126)
                      ||+|+...
T Consensus       124 NK~D~~~~  131 (268)
T cd04170         124 NKMDRERA  131 (268)
T ss_pred             ECCccCCC
Confidence            99998764

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.09  E-value=4.9e-10  Score=77.83  Aligned_cols=105  Identities=17%  Similarity=0.226  Sum_probs=77.6

Q ss_pred             EEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCC
Q psy6566          16 EEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNS   95 (126)
Q Consensus        16 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~   95 (126)
                      ..+.++++.+.|.||||+..|....+..+.=.|++++++|+.+- ...+.+..+++.+..    +.+.|+|.||+|.+..
T Consensus        61 Tav~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~~----gL~PIVVvNKiDrp~A  135 (603)
T COG1217          61 TAVNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALAL----GLKPIVVINKIDRPDA  135 (603)
T ss_pred             ceeecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccC-CCCchhhhHHHHHHc----CCCcEEEEeCCCCCCC
Confidence            34556999999999999999999999999999999999998763 333455556777654    4566889999999886


Q ss_pred             CCHHHHHhhcCc-----CcccCCceEEEEeeeeeC
Q psy6566          96 MSPVEISNLLDL-----TSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        96 ~~~~~v~~~~~~-----~~~~~~~~~~~~~Sa~~~  125 (126)
                      ...+.+.+.+.+     ....+..+++++.||+.|
T Consensus       136 rp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G  170 (603)
T COG1217         136 RPDEVVDEVFDLFVELGATDEQLDFPIVYASARNG  170 (603)
T ss_pred             CHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCc
Confidence            443333333221     112456789999999887

>KOG1489|consensus

Probab=99.06  E-value=2e-09  Score=71.60  Aligned_cols=97  Identities=16%  Similarity=0.168  Sum_probs=66.2

Q ss_pred             EEEEEEEcCCCcchH-------HHHHhhccCCcEEEEEEECCCc---ccHHHHHHHHHHHhC-CCCCCCCeEEEEEecCC
Q psy6566          23 IHFIMWDLGGQQSLR-------AAWSTYYTNTEFVILVIDSTDR---ERISLTKEELYKMLN-HEDLSKAAVLIYANKQD   91 (126)
Q Consensus        23 ~~~~i~Dt~G~~~~~-------~~~~~~~~~~~~~l~v~d~~~~---~~~~~~~~~~~~~~~-~~~~~~~piilv~nK~D   91 (126)
                      ..+.+-|.||.-.-.       ......++.|+.++||+|++..   +.++....++.++-. ...+.+.|.++|+||+|
T Consensus       244 ~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD  323 (366)
T KOG1489|consen  244 SQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKID  323 (366)
T ss_pred             ceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccC
Confidence            448999999954322       2334468899999999999987   677777666655422 23457899999999999


Q ss_pred             CCC-CCCH-HHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          92 IKN-SMSP-VEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        92 ~~~-~~~~-~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +++ +.+. +++...+..       -.++.+||++++
T Consensus       324 ~~eae~~~l~~L~~~lq~-------~~V~pvsA~~~e  353 (366)
T KOG1489|consen  324 LPEAEKNLLSSLAKRLQN-------PHVVPVSAKSGE  353 (366)
T ss_pred             chhHHHHHHHHHHHHcCC-------CcEEEeeecccc
Confidence            954 2221 334433331       158999999875

>PRK00049 elongation factor Tu; Reviewed

Probab=99.05  E-value=3.2e-09  Score=73.89  Aligned_cols=111  Identities=20%  Similarity=0.190  Sum_probs=68.3

Q ss_pred             ccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEE-EEEe
Q psy6566          10 TIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVL-IYAN   88 (126)
Q Consensus        10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-lv~n   88 (126)
                      |+......+..++..+.+.||||+..|.......+..+|++++|+|+.+... .....++..+ ..   .++|.+ ++.|
T Consensus        62 Ti~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~-~~---~g~p~iiVvvN  136 (396)
T PRK00049         62 TINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLA-RQ---VGVPYIVVFLN  136 (396)
T ss_pred             EEeeeEEEEcCCCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHH-HH---cCCCEEEEEEe
Confidence            3333333333377889999999998887776677889999999999876422 2233334333 22   357865 6899


Q ss_pred             cCCCCCCCC-HH----HHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          89 KQDIKNSMS-PV----EISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        89 K~D~~~~~~-~~----~v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      |+|+.+... .+    ++...+.........++++.+||++|
T Consensus       137 K~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g  178 (396)
T PRK00049        137 KCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKA  178 (396)
T ss_pred             ecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccc
Confidence            999964211 11    12222211111123578999999875

>KOG0099|consensus

Probab=99.03  E-value=8e-10  Score=71.90  Aligned_cols=86  Identities=23%  Similarity=0.431  Sum_probs=74.1

Q ss_pred             CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCC----------cccHHHHHHHHHHHhCCCCC
Q psy6566           9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD----------RERISLTKEELYKMLNHEDL   78 (126)
Q Consensus         9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~----------~~~~~~~~~~~~~~~~~~~~   78 (126)
                      -|.|+....+++..+.|+++|++||...+..|-.++.+..+++||+..++          .+.++++..+++.+-.+.++
T Consensus       188 lTsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL  267 (379)
T KOG0099|consen  188 LTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWL  267 (379)
T ss_pred             hccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHH
Confidence            36778888899999999999999999999999999999999999998663          35667777777777777788


Q ss_pred             CCCeEEEEEecCCCCC
Q psy6566          79 SKAAVLIYANKQDIKN   94 (126)
Q Consensus        79 ~~~piilv~nK~D~~~   94 (126)
                      ..+.+++..||.|+..
T Consensus       268 ~tisvIlFLNKqDlla  283 (379)
T KOG0099|consen  268 RTISVILFLNKQDLLA  283 (379)
T ss_pred             hhhheeEEecHHHHHH
Confidence            8899999999999764

>PRK12739 elongation factor G; Reviewed

Probab=99.03  E-value=3.8e-09  Score=78.14  Aligned_cols=82  Identities=15%  Similarity=0.153  Sum_probs=62.2

Q ss_pred             CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEe
Q psy6566           9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYAN   88 (126)
Q Consensus         9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n   88 (126)
                      -|+......+.+++.++.++||||+..|...+...++.+|++++|+|+.+..... ....+.... .   .++|.++++|
T Consensus        59 iti~~~~~~~~~~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~q-t~~i~~~~~-~---~~~p~iv~iN  133 (691)
T PRK12739         59 ITITSAATTCFWKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQ-SETVWRQAD-K---YGVPRIVFVN  133 (691)
T ss_pred             CCccceeEEEEECCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHHH-H---cCCCEEEEEE
Confidence            4555556667779999999999999989888888999999999999988653322 223333332 2   4689999999


Q ss_pred             cCCCCCC
Q psy6566          89 KQDIKNS   95 (126)
Q Consensus        89 K~D~~~~   95 (126)
                      |+|+.+.
T Consensus       134 K~D~~~~  140 (691)
T PRK12739        134 KMDRIGA  140 (691)
T ss_pred             CCCCCCC
Confidence            9999864

>PRK12740 elongation factor G; Reviewed

Probab=99.03  E-value=5.6e-09  Score=77.03  Aligned_cols=84  Identities=13%  Similarity=0.123  Sum_probs=66.0

Q ss_pred             cCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEE
Q psy6566           7 TSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIY   86 (126)
Q Consensus         7 ~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv   86 (126)
                      ...|++.....+.+++..+.+|||||+..+...+..+++.+|++++|+|+++....... ..+..+. .   .++|++++
T Consensus        44 rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~-~~~~~~~-~---~~~p~iiv  118 (668)
T PRK12740         44 RGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTE-TVWRQAE-K---YGVPRIIF  118 (668)
T ss_pred             cCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHH-HHHHHHH-H---cCCCEEEE
Confidence            34677777778888999999999999999888888889999999999999876544433 3343332 2   46899999


Q ss_pred             EecCCCCCC
Q psy6566          87 ANKQDIKNS   95 (126)
Q Consensus        87 ~nK~D~~~~   95 (126)
                      +||+|+...
T Consensus       119 ~NK~D~~~~  127 (668)
T PRK12740        119 VNKMDRAGA  127 (668)
T ss_pred             EECCCCCCC
Confidence            999998763

>COG1159 Era GTPase [General function prediction only]

Probab=99.03  E-value=4.4e-09  Score=69.44  Aligned_cols=106  Identities=18%  Similarity=0.268  Sum_probs=65.6

Q ss_pred             ceEEEEEE-CCEEEEEEEcCCCcchH--------HHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE
Q psy6566          13 SNVEEVIW-KNIHFIMWDLGGQQSLR--------AAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV   83 (126)
Q Consensus        13 ~~~~~~~~-~~~~~~i~Dt~G~~~~~--------~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi   83 (126)
                      -....+.. +..++.+.||||.-.-+        ......+..+|.++||+|+++.-..  -..++.+.++.   .+.|+
T Consensus        43 ~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~--~d~~il~~lk~---~~~pv  117 (298)
T COG1159          43 NRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGP--GDEFILEQLKK---TKTPV  117 (298)
T ss_pred             hheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCc--cHHHHHHHHhh---cCCCe
Confidence            33344444 78899999999953322        2334458899999999999874222  22233344333   46799


Q ss_pred             EEEEecCCCCCCCC-HHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          84 LIYANKQDIKNSMS-PVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        84 ilv~nK~D~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +++.||+|...... ...+.......   .....++.+||++|.
T Consensus       118 il~iNKID~~~~~~~l~~~~~~~~~~---~~f~~ivpiSA~~g~  158 (298)
T COG1159         118 ILVVNKIDKVKPKTVLLKLIAFLKKL---LPFKEIVPISALKGD  158 (298)
T ss_pred             EEEEEccccCCcHHHHHHHHHHHHhh---CCcceEEEeeccccC
Confidence            99999999876433 12222222111   122379999999873

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.02  E-value=1.5e-09  Score=76.51  Aligned_cols=99  Identities=19%  Similarity=0.140  Sum_probs=62.7

Q ss_pred             EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHH--
Q psy6566          23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVE--  100 (126)
Q Consensus        23 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--  100 (126)
                      ..+.+.|+||++.|-.....-...+|++++|+|+.+...-...++++.. ....  .-.+++++.||+|+.......+  
T Consensus       117 ~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i-~~~l--gi~~iIVvlNKiDlv~~~~~~~~~  193 (460)
T PTZ00327        117 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAA-VEIM--KLKHIIILQNKIDLVKEAQAQDQY  193 (460)
T ss_pred             ceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHH-HHHc--CCCcEEEEEecccccCHHHHHHHH
Confidence            4689999999999977766678899999999999863111222233322 2221  2246899999999875321112  


Q ss_pred             --HHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566         101 --ISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus       101 --v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                        +...+...  .....+++.+||++|+
T Consensus       194 ~ei~~~l~~~--~~~~~~iipVSA~~G~  219 (460)
T PTZ00327        194 EEIRNFVKGT--IADNAPIIPISAQLKY  219 (460)
T ss_pred             HHHHHHHHhh--ccCCCeEEEeeCCCCC
Confidence              22211111  1235689999999874

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.02  E-value=5.2e-09  Score=63.93  Aligned_cols=115  Identities=20%  Similarity=0.126  Sum_probs=63.4

Q ss_pred             ccCCccCceEEE--EEECCEEEEEEEcCCCc----------chHHHHHhhcc---CCcEEEEEEECCCcccHHHHHHHHH
Q psy6566           6 HTSPTIGSNVEE--VIWKNIHFIMWDLGGQQ----------SLRAAWSTYYT---NTEFVILVIDSTDRERISLTKEELY   70 (126)
Q Consensus         6 ~~~pTi~~~~~~--~~~~~~~~~i~Dt~G~~----------~~~~~~~~~~~---~~~~~l~v~d~~~~~~~~~~~~~~~   70 (126)
                      .+.+|.+.....  +..+. .+.+|||+|..          .+......++.   .++++++++|.....+....  .+.
T Consensus        27 ~~~~~~~~t~~~~~~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~  103 (170)
T cd01876          27 RTSKTPGKTQLINFFNVND-KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDL--EML  103 (170)
T ss_pred             eecCCCCcceeEEEEEccC-eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHH--HHH
Confidence            456666654332  22333 89999999942          34444455554   35788999998765322211  111


Q ss_pred             HHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcc-cCCceEEEEeeeeeCC
Q psy6566          71 KMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSI-KKQQWHIQSCCALTGE  126 (126)
Q Consensus        71 ~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~Sa~~~~  126 (126)
                      ..+..   .+.|+++++||+|+.................. .....+++++||+++.
T Consensus       104 ~~l~~---~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~  157 (170)
T cd01876         104 DWLEE---LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQ  157 (170)
T ss_pred             HHHHH---cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCC
Confidence            22222   24799999999998643221212111111110 1334578899999873

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.00  E-value=4.1e-09  Score=73.08  Aligned_cols=105  Identities=22%  Similarity=0.248  Sum_probs=68.9

Q ss_pred             CccCceEEEEEECCEEEEEEEcCCCcchH---------HHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCC
Q psy6566           9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLR---------AAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLS   79 (126)
Q Consensus         9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~   79 (126)
                      .|-+-......+.+..|.+.||+|.+...         .+....+..||+++||+|.-.-  .....+.+.+.++.   .
T Consensus        37 vTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~G--it~~D~~ia~~Lr~---~  111 (444)
T COG1160          37 VTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREG--ITPADEEIAKILRR---S  111 (444)
T ss_pred             CccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCC--CCHHHHHHHHHHHh---c
Confidence            44445556677788889999999976322         2345568899999999997652  22333446666663   5


Q ss_pred             CCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          80 KAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        80 ~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      +.|++++.||+|-....  ....+...+.+.     ..+.+||..|
T Consensus       112 ~kpviLvvNK~D~~~~e--~~~~efyslG~g-----~~~~ISA~Hg  150 (444)
T COG1160         112 KKPVILVVNKIDNLKAE--ELAYEFYSLGFG-----EPVPISAEHG  150 (444)
T ss_pred             CCCEEEEEEcccCchhh--hhHHHHHhcCCC-----CceEeehhhc
Confidence            79999999999976421  222333222222     5788888776

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=98.98  E-value=2.8e-09  Score=74.31  Aligned_cols=95  Identities=16%  Similarity=0.191  Sum_probs=67.8

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCH--
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSP--   98 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~--   98 (126)
                      +...+++.||||+-.|.-...+.+..|.|+++|+|+++--..+.+...+..+ +    .+..++-|.||+||+.....  
T Consensus        74 ~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAl-e----~~LeIiPViNKIDLP~Adperv  148 (603)
T COG0481          74 ETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----NNLEIIPVLNKIDLPAADPERV  148 (603)
T ss_pred             CEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHH-H----cCcEEEEeeecccCCCCCHHHH
Confidence            4478999999999999887777899999999999998754333343333333 2    46889999999999875321  


Q ss_pred             -HHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          99 -VEISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        99 -~~v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                       .++.+.++....     ..+.+|||+|
T Consensus       149 k~eIe~~iGid~~-----dav~~SAKtG  171 (603)
T COG0481         149 KQEIEDIIGIDAS-----DAVLVSAKTG  171 (603)
T ss_pred             HHHHHHHhCCCcc-----hheeEecccC
Confidence             233444443322     4688999998

>PLN03127 Elongation factor Tu; Provisional

Probab=98.97  E-value=6.1e-09  Score=73.47  Aligned_cols=111  Identities=19%  Similarity=0.137  Sum_probs=67.4

Q ss_pred             CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEE
Q psy6566           9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLIYA   87 (126)
Q Consensus         9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~   87 (126)
                      -|+......+..++.++.+.||||++.|-.........+|++++|+|+.+... ......+..+ ..   .++| ++++.
T Consensus       110 iTi~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~-~~---~gip~iIvvi  184 (447)
T PLN03127        110 ITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLA-RQ---VGVPSLVVFL  184 (447)
T ss_pred             ceeeeeEEEEcCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHH-HH---cCCCeEEEEE
Confidence            35555444455577899999999999887766556678999999999876422 2233333333 22   3578 57889


Q ss_pred             ecCCCCCCCC-HHHHHhhcCcC----cccCCceEEEEeeeee
Q psy6566          88 NKQDIKNSMS-PVEISNLLDLT----SIKKQQWHIQSCCALT  124 (126)
Q Consensus        88 nK~D~~~~~~-~~~v~~~~~~~----~~~~~~~~~~~~Sa~~  124 (126)
                      ||+|+.+... .+.+...+...    ......++++.+||.+
T Consensus       185 NKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~s  226 (447)
T PLN03127        185 NKVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALS  226 (447)
T ss_pred             EeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccce
Confidence            9999875211 11122111100    0112357888888763

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=98.97  E-value=2.6e-09  Score=72.04  Aligned_cols=113  Identities=17%  Similarity=0.135  Sum_probs=73.9

Q ss_pred             CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEe
Q psy6566           9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYAN   88 (126)
Q Consensus         9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n   88 (126)
                      =||.+....|.-++.+|.+-||||+++|....-.-...|+..++++|+- ..-+++.+.+- .+...-  .=.-+++..|
T Consensus        72 ITIDVAYRyFsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR-~Gvl~QTrRHs-~I~sLL--GIrhvvvAVN  147 (431)
T COG2895          72 ITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDAR-KGVLEQTRRHS-FIASLL--GIRHVVVAVN  147 (431)
T ss_pred             ceEEEEeeecccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecc-hhhHHHhHHHH-HHHHHh--CCcEEEEEEe
Confidence            4666777777779999999999999999887766678899999999973 33344443321 111111  2235889999


Q ss_pred             cCCCCCCC--CHHHHHhhcCcCcc---cCCceEEEEeeeeeCC
Q psy6566          89 KQDIKNSM--SPVEISNLLDLTSI---KKQQWHIQSCCALTGE  126 (126)
Q Consensus        89 K~D~~~~~--~~~~v~~~~~~~~~---~~~~~~~~~~Sa~~~~  126 (126)
                      |+||.+-.  ..+++...+. .++   .-....++.+||..|+
T Consensus       148 KmDLvdy~e~~F~~I~~dy~-~fa~~L~~~~~~~IPiSAl~GD  189 (431)
T COG2895         148 KMDLVDYSEEVFEAIVADYL-AFAAQLGLKDVRFIPISALLGD  189 (431)
T ss_pred             eecccccCHHHHHHHHHHHH-HHHHHcCCCcceEEechhccCC
Confidence            99998732  1223322221 111   2234479999999874

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.94  E-value=5.7e-09  Score=71.59  Aligned_cols=115  Identities=17%  Similarity=0.181  Sum_probs=74.6

Q ss_pred             CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcc------cHHHHHHHHHHHhCCCCCCCCe
Q psy6566           9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE------RISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~------~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      -|+......+..+...+.|.|+||+..|-...-.-...||+.++|+|+.+.+      .-...++ ...+.+.  +.-..
T Consensus        71 vTi~~~~~~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrE-H~~La~t--lGi~~  147 (428)
T COG5256          71 VTIDVAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTRE-HAFLART--LGIKQ  147 (428)
T ss_pred             eEEEEEEEEeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhH-HHHHHHh--cCCce
Confidence            3566666777778889999999999999877776788999999999987652      1111122 1112222  13346


Q ss_pred             EEEEEecCCCCC--CCCHHHHHhhcCc---Cc-ccCCceEEEEeeeeeCC
Q psy6566          83 VLIYANKQDIKN--SMSPVEISNLLDL---TS-IKKQQWHIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~--~~~~~~v~~~~~~---~~-~~~~~~~~~~~Sa~~~~  126 (126)
                      ++++.||+|+.+  +...+++......   .. .+..+++|+.+||.+|+
T Consensus       148 lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~  197 (428)
T COG5256         148 LIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGD  197 (428)
T ss_pred             EEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCC
Confidence            899999999976  1222333332221   11 13346789999999884

>PRK09866 hypothetical protein; Provisional

Probab=98.90  E-value=2.5e-08  Score=72.36  Aligned_cols=102  Identities=18%  Similarity=0.162  Sum_probs=60.9

Q ss_pred             CEEEEEEEcCCCcc-----hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCC
Q psy6566          22 NIHFIMWDLGGQQS-----LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSM   96 (126)
Q Consensus        22 ~~~~~i~Dt~G~~~-----~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~   96 (126)
                      ...+.+.||||...     ........++.+|.++||+|..+..+..+.  .+.+.++... .+.|+++++||+|+.+..
T Consensus       229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De--eIlk~Lkk~~-K~~PVILVVNKIDl~dre  305 (741)
T PRK09866        229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE--EVREAILAVG-QSVPLYVLVNKFDQQDRN  305 (741)
T ss_pred             cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH--HHHHHHHhcC-CCCCEEEEEEcccCCCcc
Confidence            46789999999743     222333468999999999998864333322  2333333321 235999999999986421


Q ss_pred             C--HHHHHhhcCcC--cccCCceEEEEeeeeeCC
Q psy6566          97 S--PVEISNLLDLT--SIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        97 ~--~~~v~~~~~~~--~~~~~~~~~~~~Sa~~~~  126 (126)
                      .  .+.+.......  ......-.++.+||++|.
T Consensus       306 eddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~  339 (741)
T PRK09866        306 SDDADQVRALISGTLMKGCITPQQIFPVSSMWGY  339 (741)
T ss_pred             cchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCC
Confidence            1  23333332211  111123369999999873

>KOG0085|consensus

Probab=98.88  E-value=1.8e-10  Score=73.74  Aligned_cols=89  Identities=24%  Similarity=0.414  Sum_probs=77.3

Q ss_pred             cCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECC----------CcccHHHHHHHHHHHhCCC
Q psy6566           7 TSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDST----------DRERISLTKEELYKMLNHE   76 (126)
Q Consensus         7 ~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~----------~~~~~~~~~~~~~~~~~~~   76 (126)
                      ..||.|+..+.+.++.+.+.+.|.+||...+..|-+++++...++|++..+          +.+..++.+-++.-++..+
T Consensus       183 RvPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yP  262 (359)
T KOG0085|consen  183 RVPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYP  262 (359)
T ss_pred             ecCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccc
Confidence            469999999999999999999999999999999999999988887776543          3566777777888888889


Q ss_pred             CCCCCeEEEEEecCCCCCC
Q psy6566          77 DLSKAAVLIYANKQDIKNS   95 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~   95 (126)
                      +..+.++++..||.|+.++
T Consensus       263 WF~nssVIlFLNKkDlLEe  281 (359)
T KOG0085|consen  263 WFQNSSVILFLNKKDLLEE  281 (359)
T ss_pred             cccCCceEEEechhhhhhh
Confidence            9999999999999998764

>PRK00007 elongation factor G; Reviewed

Probab=98.87  E-value=4.8e-08  Score=72.39  Aligned_cols=82  Identities=16%  Similarity=0.156  Sum_probs=60.0

Q ss_pred             CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEe
Q psy6566           9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYAN   88 (126)
Q Consensus         9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n   88 (126)
                      -|+......+.+++..+.+.||||+..|.......++.+|++++|+|+.+.-.... ...+..+.+    .++|.+++.|
T Consensus        61 ~ti~~~~~~~~~~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~----~~~p~iv~vN  135 (693)
T PRK00007         61 ITITSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADK----YKVPRIAFVN  135 (693)
T ss_pred             CCEeccEEEEEECCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHH----cCCCEEEEEE
Confidence            34444445566689999999999998887777777899999999999876433322 333444332    3578899999


Q ss_pred             cCCCCCC
Q psy6566          89 KQDIKNS   95 (126)
Q Consensus        89 K~D~~~~   95 (126)
                      |+|+.+.
T Consensus       136 K~D~~~~  142 (693)
T PRK00007        136 KMDRTGA  142 (693)
T ss_pred             CCCCCCC
Confidence            9999764

>PRK13768 GTPase; Provisional

Probab=98.85  E-value=5.6e-09  Score=68.64  Aligned_cols=71  Identities=18%  Similarity=0.170  Sum_probs=44.1

Q ss_pred             EEEEEEEcCCCcch---HHHHHhhc---cC--CcEEEEEEECCCcccHHHHHH--HHHHHhCCCCCCCCeEEEEEecCCC
Q psy6566          23 IHFIMWDLGGQQSL---RAAWSTYY---TN--TEFVILVIDSTDRERISLTKE--ELYKMLNHEDLSKAAVLIYANKQDI   92 (126)
Q Consensus        23 ~~~~i~Dt~G~~~~---~~~~~~~~---~~--~~~~l~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~piilv~nK~D~   92 (126)
                      ..+.+||+||+...   +..+..++   ..  ++++++++|+.......+...  ++.......  .++|++++.||+|+
T Consensus        97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~--~~~~~i~v~nK~D~  174 (253)
T PRK13768         97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR--LGLPQIPVLNKADL  174 (253)
T ss_pred             CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH--cCCCEEEEEEhHhh
Confidence            47899999998664   33333332   22  899999999865433322211  111111111  46899999999998


Q ss_pred             CCC
Q psy6566          93 KNS   95 (126)
Q Consensus        93 ~~~   95 (126)
                      .+.
T Consensus       175 ~~~  177 (253)
T PRK13768        175 LSE  177 (253)
T ss_pred             cCc
Confidence            764

>COG1084 Predicted GTPase [General function prediction only]

Probab=98.83  E-value=4.6e-08  Score=65.52  Aligned_cols=91  Identities=18%  Similarity=0.160  Sum_probs=60.9

Q ss_pred             CccCceEEEEEECCEEEEEEEcCCCcc--hH------HHHHhhc-cCCcEEEEEEECCCc--ccHHHHHHHHHHHhCCCC
Q psy6566           9 PTIGSNVEEVIWKNIHFIMWDLGGQQS--LR------AAWSTYY-TNTEFVILVIDSTDR--ERISLTKEELYKMLNHED   77 (126)
Q Consensus         9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~--~~------~~~~~~~-~~~~~~l~v~d~~~~--~~~~~~~~~~~~~~~~~~   77 (126)
                      +|-+++...+..+...+|+.||||.-.  +.      .+.-..+ .-+++++|++|.+..  -+.+....++.++...  
T Consensus       201 TTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~--  278 (346)
T COG1084         201 TTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL--  278 (346)
T ss_pred             cccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh--
Confidence            455566666666888999999999421  11      1111112 237889999998864  4777777777777554  


Q ss_pred             CCCCeEEEEEecCCCCCCCCHHHHH
Q psy6566          78 LSKAAVLIYANKQDIKNSMSPVEIS  102 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~~~~~~v~  102 (126)
                       -+.|+++|.||+|+......+++.
T Consensus       279 -f~~p~v~V~nK~D~~~~e~~~~~~  302 (346)
T COG1084         279 -FKAPIVVVINKIDIADEEKLEEIE  302 (346)
T ss_pred             -cCCCeEEEEecccccchhHHHHHH
Confidence             348999999999988643334433

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.80  E-value=1.8e-08  Score=60.67  Aligned_cols=77  Identities=14%  Similarity=0.219  Sum_probs=47.4

Q ss_pred             hhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEee
Q psy6566          42 TYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC  121 (126)
Q Consensus        42 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~S  121 (126)
                      ..++.+|++++|+|+.++.+..+.  .+...+.... .+.|+++++||+|+..+.........+     +..+..++.+|
T Consensus         7 ~~i~~aD~vl~ViD~~~p~~~~~~--~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~-----~~~~~~ii~iS   78 (141)
T cd01857           7 RVVERSDIVVQIVDARNPLLFRPP--DLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYF-----KKEGIVVVFFS   78 (141)
T ss_pred             HHHhhCCEEEEEEEccCCcccCCH--HHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHH-----HhcCCeEEEEE
Confidence            358899999999999876543311  2233333211 468999999999986532111122221     12235789999


Q ss_pred             eeeCC
Q psy6566         122 ALTGE  126 (126)
Q Consensus       122 a~~~~  126 (126)
                      |++++
T Consensus        79 a~~~~   83 (141)
T cd01857          79 ALKEN   83 (141)
T ss_pred             ecCCC
Confidence            98763

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01859 MJ1464 MJ1464

Probab=98.79  E-value=1.5e-08  Score=61.84  Aligned_cols=81  Identities=15%  Similarity=0.095  Sum_probs=49.9

Q ss_pred             hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCce
Q psy6566          36 LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQW  115 (126)
Q Consensus        36 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~  115 (126)
                      ++.++++..+++|.+++|+|+.++......  .+...+..   .+.|+++++||+|+...........     .....+.
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~--~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~-----~~~~~~~   71 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRSR--KLERYVLE---LGKKLLIVLNKADLVPKEVLEKWKS-----IKESEGI   71 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCCH--HHHHHHHh---CCCcEEEEEEhHHhCCHHHHHHHHH-----HHHhCCC
Confidence            456778888999999999999775432221  12222222   3689999999999864211111111     1112335


Q ss_pred             EEEEeeeeeCC
Q psy6566         116 HIQSCCALTGE  126 (126)
Q Consensus       116 ~~~~~Sa~~~~  126 (126)
                      +++.+||++|.
T Consensus        72 ~~~~iSa~~~~   82 (156)
T cd01859          72 PVVYVSAKERL   82 (156)
T ss_pred             cEEEEEccccc
Confidence            68999999873

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG1707|consensus

Probab=98.78  E-value=6.2e-09  Score=73.93  Aligned_cols=75  Identities=13%  Similarity=0.193  Sum_probs=63.7

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC--CCCCeEEEEEecCCCCCC
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED--LSKAAVLIYANKQDIKNS   95 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~   95 (126)
                      +.+...+.||+..+.-+.....-+++|+++.++++.+++.+.+.+...|..+++...  ..++|+|+||||+|....
T Consensus        54 e~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~  130 (625)
T KOG1707|consen   54 ENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDN  130 (625)
T ss_pred             CcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccc
Confidence            667799999998777776667779999999999999999999999888888887643  247899999999998753

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=98.77  E-value=5.9e-08  Score=72.22  Aligned_cols=83  Identities=14%  Similarity=0.087  Sum_probs=58.6

Q ss_pred             cCCccCceEEE----EEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           7 TSPTIGSNVEE----VIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         7 ~~pTi~~~~~~----~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      ..+|+......    +..++..+.+|||||+..|.......++.+|++++|+|+.+.-..+ ....+....+    .+.|
T Consensus        66 rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~-t~~~~~~~~~----~~~p  140 (720)
T TIGR00490        66 RGITINAANVSMVHEYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQ-TETVLRQALK----ENVK  140 (720)
T ss_pred             hcchhhcccceeEEeecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCcc-HHHHHHHHHH----cCCC
Confidence            34577644333    2337789999999999999888888899999999999987632221 2222333322    3567


Q ss_pred             EEEEEecCCCCC
Q psy6566          83 VLIYANKQDIKN   94 (126)
Q Consensus        83 iilv~nK~D~~~   94 (126)
                      .++++||+|...
T Consensus       141 ~ivviNKiD~~~  152 (720)
T TIGR00490       141 PVLFINKVDRLI  152 (720)
T ss_pred             EEEEEEChhccc
Confidence            889999999864

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>COG2262 HflX GTPases [General function prediction only]

Probab=98.76  E-value=1.6e-07  Score=64.61  Aligned_cols=108  Identities=16%  Similarity=0.237  Sum_probs=72.5

Q ss_pred             CccCceEEEEEE-CCEEEEEEEcCCC---------cchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566           9 PTIGSNVEEVIW-KNIHFIMWDLGGQ---------QSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL   78 (126)
Q Consensus         9 pTi~~~~~~~~~-~~~~~~i~Dt~G~---------~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~   78 (126)
                      .|.....+.+.+ ++..+.+-||-|=         +-|++..+. ...||.++.|+|++++...+.+.. ...++.....
T Consensus       225 ATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE-~~~aDlllhVVDaSdp~~~~~~~~-v~~vL~el~~  302 (411)
T COG2262         225 ATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEE-VKEADLLLHVVDASDPEILEKLEA-VEDVLAEIGA  302 (411)
T ss_pred             ccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHH-hhcCCEEEEEeecCChhHHHHHHH-HHHHHHHcCC
Confidence            566777788888 4789999999992         334444443 567999999999999865555543 4455555444


Q ss_pred             CCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          79 SKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        79 ~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ..+|++++.||+|+.....   ........   . + ..+.+||++|+
T Consensus       303 ~~~p~i~v~NKiD~~~~~~---~~~~~~~~---~-~-~~v~iSA~~~~  342 (411)
T COG2262         303 DEIPIILVLNKIDLLEDEE---ILAELERG---S-P-NPVFISAKTGE  342 (411)
T ss_pred             CCCCEEEEEecccccCchh---hhhhhhhc---C-C-CeEEEEeccCc
Confidence            6799999999999765321   11111101   0 1 47889999874

>PRK12289 GTPase RsgA; Reviewed

Probab=98.70  E-value=4.1e-08  Score=67.28  Aligned_cols=78  Identities=14%  Similarity=0.106  Sum_probs=51.2

Q ss_pred             HHhhccCCcEEEEEEECCCcc-cHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEE
Q psy6566          40 WSTYYTNTEFVILVIDSTDRE-RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQ  118 (126)
Q Consensus        40 ~~~~~~~~~~~l~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~  118 (126)
                      .+..+.++|.+++|+|+.++. ....+..++..+ ..   .++|+++|+||+|+............+     ...++.++
T Consensus        83 ~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a-~~---~~ip~ILVlNK~DLv~~~~~~~~~~~~-----~~~g~~v~  153 (352)
T PRK12289         83 DRPPVANADQILLVFALAEPPLDPWQLSRFLVKA-ES---TGLEIVLCLNKADLVSPTEQQQWQDRL-----QQWGYQPL  153 (352)
T ss_pred             echhhhcCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEchhcCChHHHHHHHHHH-----HhcCCeEE
Confidence            344588999999999998775 444445555444 22   578999999999996531111122211     23456789


Q ss_pred             EeeeeeCC
Q psy6566         119 SCCALTGE  126 (126)
Q Consensus       119 ~~Sa~~~~  126 (126)
                      .+||++|.
T Consensus       154 ~iSA~tg~  161 (352)
T PRK12289        154 FISVETGI  161 (352)
T ss_pred             EEEcCCCC
Confidence            99999873

>KOG3886|consensus

Probab=98.68  E-value=6e-08  Score=62.22  Aligned_cols=87  Identities=23%  Similarity=0.336  Sum_probs=64.6

Q ss_pred             cCCccCceEEEEEE-CCEEEEEEEcCCCcchHH-----HHHhhccCCcEEEEEEECCCcccHHHHHH---HHHHHhCCCC
Q psy6566           7 TSPTIGSNVEEVIW-KNIHFIMWDLGGQQSLRA-----AWSTYYTNTEFVILVIDSTDRERISLTKE---ELYKMLNHED   77 (126)
Q Consensus         7 ~~pTi~~~~~~~~~-~~~~~~i~Dt~G~~~~~~-----~~~~~~~~~~~~l~v~d~~~~~~~~~~~~---~~~~~~~~~~   77 (126)
                      ..+||++.+..+++ ++..+.+||.+||+.+-.     ..+..++..++++++||+...+--.++..   -++.+++.  
T Consensus        36 lg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~--  113 (295)
T KOG3886|consen   36 LGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQN--  113 (295)
T ss_pred             cCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhc--
Confidence            46788898888888 779999999999986533     34566899999999999876543333322   22334433  


Q ss_pred             CCCCeEEEEEecCCCCCC
Q psy6566          78 LSKAAVLIYANKQDIKNS   95 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~   95 (126)
                      .|...+....+|.|+...
T Consensus       114 SP~AkiF~l~hKmDLv~~  131 (295)
T KOG3886|consen  114 SPEAKIFCLLHKMDLVQE  131 (295)
T ss_pred             CCcceEEEEEeechhccc
Confidence            378889999999999764

>cd01855 YqeH YqeH

Probab=98.66  E-value=5e-08  Score=61.45  Aligned_cols=84  Identities=18%  Similarity=0.134  Sum_probs=49.8

Q ss_pred             hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCC-CHHHHHhhc---CcCccc
Q psy6566          36 LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSM-SPVEISNLL---DLTSIK  111 (126)
Q Consensus        36 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~~~~v~~~~---~~~~~~  111 (126)
                      ++.++..+++.++++++|+|+.++..-     +...+...  ..+.|+++|+||+|+.... ....+....   ......
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~   96 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG   96 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence            678889999999999999999875311     11111111  1468999999999986432 222222111   000000


Q ss_pred             CCceEEEEeeeeeCC
Q psy6566         112 KQQWHIQSCCALTGE  126 (126)
Q Consensus       112 ~~~~~~~~~Sa~~~~  126 (126)
                      .....++.+||++|+
T Consensus        97 ~~~~~i~~vSA~~~~  111 (190)
T cd01855          97 LKPKDVILISAKKGW  111 (190)
T ss_pred             CCcccEEEEECCCCC
Confidence            111258999999874

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01899 Ygr210 Ygr210 subfamily

Probab=98.66  E-value=3.8e-07  Score=61.83  Aligned_cols=37  Identities=14%  Similarity=0.227  Sum_probs=28.8

Q ss_pred             CEEEEEEEcCCC----cchHHHHHh---hccCCcEEEEEEECCC
Q psy6566          22 NIHFIMWDLGGQ----QSLRAAWST---YYTNTEFVILVIDSTD   58 (126)
Q Consensus        22 ~~~~~i~Dt~G~----~~~~~~~~~---~~~~~~~~l~v~d~~~   58 (126)
                      .+.+++|||||.    +..+.+-..   .++.||++++|+|+..
T Consensus        68 ~v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~  111 (318)
T cd01899          68 YVPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG  111 (318)
T ss_pred             cceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence            368999999997    445544333   5899999999999873

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.62  E-value=6.5e-08  Score=65.08  Aligned_cols=75  Identities=19%  Similarity=0.211  Sum_probs=48.4

Q ss_pred             ccCCcEEEEEEECCCcccHHHH-HHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeee
Q psy6566          44 YTNTEFVILVIDSTDRERISLT-KEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCA  122 (126)
Q Consensus        44 ~~~~~~~l~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa  122 (126)
                      ..++|.+++|+|+.++++.... ..|+..+ ..   .++|+++++||+|+....  .......  ...+..+++++.+||
T Consensus        78 aaniD~vllV~d~~~p~~~~~~idr~L~~~-~~---~~ip~iIVlNK~DL~~~~--~~~~~~~--~~~~~~g~~v~~vSA  149 (298)
T PRK00098         78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLA-EA---NGIKPIIVLNKIDLLDDL--EEARELL--ALYRAIGYDVLELSA  149 (298)
T ss_pred             eecCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEhHHcCCCH--HHHHHHH--HHHHHCCCeEEEEeC
Confidence            5889999999999887665554 3444333 33   578999999999996321  1111110  111233568999999


Q ss_pred             eeCC
Q psy6566         123 LTGE  126 (126)
Q Consensus       123 ~~~~  126 (126)
                      ++|+
T Consensus       150 ~~g~  153 (298)
T PRK00098        150 KEGE  153 (298)
T ss_pred             CCCc
Confidence            9873

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.61  E-value=1.5e-07  Score=63.07  Aligned_cols=75  Identities=17%  Similarity=0.155  Sum_probs=52.0

Q ss_pred             hccCCcEEEEEEECCCcc-cHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEee
Q psy6566          43 YYTNTEFVILVIDSTDRE-RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC  121 (126)
Q Consensus        43 ~~~~~~~~l~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~S  121 (126)
                      .+.++|.+++|+|+.++. ++..+.+|+..+. .   .++|+++++||+|+....  .....   .......+++++.+|
T Consensus        75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~-~---~~ip~iIVlNK~DL~~~~--~~~~~---~~~~~~~g~~v~~vS  145 (287)
T cd01854          75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAE-A---AGIEPVIVLTKADLLDDE--EEELE---LVEALALGYPVLAVS  145 (287)
T ss_pred             EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHH-H---cCCCEEEEEEHHHCCChH--HHHHH---HHHHHhCCCeEEEEE
Confidence            478999999999999887 7777777665443 2   468999999999996531  11110   011112456899999


Q ss_pred             eeeCC
Q psy6566         122 ALTGE  126 (126)
Q Consensus       122 a~~~~  126 (126)
                      |+++.
T Consensus       146 A~~g~  150 (287)
T cd01854         146 AKTGE  150 (287)
T ss_pred             CCCCc
Confidence            99873

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd01850 CDC_Septin CDC/Septin

Probab=98.60  E-value=2.1e-07  Score=61.96  Aligned_cols=83  Identities=11%  Similarity=0.117  Sum_probs=48.1

Q ss_pred             cCCccCceEEEEEE--CC--EEEEEEEcCCCcch-------HH-------------------HHHhhcc--CCcEEEEEE
Q psy6566           7 TSPTIGSNVEEVIW--KN--IHFIMWDLGGQQSL-------RA-------------------AWSTYYT--NTEFVILVI   54 (126)
Q Consensus         7 ~~pTi~~~~~~~~~--~~--~~~~i~Dt~G~~~~-------~~-------------------~~~~~~~--~~~~~l~v~   54 (126)
                      ..+|+++......+  ++  +.+.+|||||-..+       ..                   .+...+.  .+|+++|++
T Consensus        43 ~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i  122 (276)
T cd01850          43 IDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFI  122 (276)
T ss_pred             cCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEE
Confidence            45676655544444  45  67999999993221       10                   0112222  478899999


Q ss_pred             ECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566          55 DSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        55 d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~   94 (126)
                      +.+.......-...++.+.     ..+|+++|+||+|+..
T Consensus       123 ~~~~~~l~~~D~~~lk~l~-----~~v~vi~VinK~D~l~  157 (276)
T cd01850         123 EPTGHGLKPLDIEFMKRLS-----KRVNIIPVIAKADTLT  157 (276)
T ss_pred             eCCCCCCCHHHHHHHHHHh-----ccCCEEEEEECCCcCC
Confidence            8765221111122233332     2589999999999865

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=98.58  E-value=3.5e-07  Score=63.54  Aligned_cols=86  Identities=16%  Similarity=0.193  Sum_probs=61.5

Q ss_pred             EEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCC
Q psy6566          16 EEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNS   95 (126)
Q Consensus        16 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~   95 (126)
                      .++.++++.+.+.||||++.|..--..-+..+|.+++|+|+..--.. ...+ +.++.+.   .++|++-+.||.|...-
T Consensus        74 MqF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~-qT~K-LfeVcrl---R~iPI~TFiNKlDR~~r  148 (528)
T COG4108          74 MQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEP-QTLK-LFEVCRL---RDIPIFTFINKLDREGR  148 (528)
T ss_pred             EEeccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccH-HHHH-HHHHHhh---cCCceEEEeeccccccC
Confidence            44555999999999999999988777778899999999998753222 1223 3344444   68999999999998763


Q ss_pred             CC---HHHHHhhcC
Q psy6566          96 MS---PVEISNLLD  106 (126)
Q Consensus        96 ~~---~~~v~~~~~  106 (126)
                      ..   .+++.+.++
T Consensus       149 dP~ELLdEiE~~L~  162 (528)
T COG4108         149 DPLELLDEIEEELG  162 (528)
T ss_pred             ChHHHHHHHHHHhC
Confidence            32   234555444

>PTZ00416 elongation factor 2; Provisional

Probab=98.53  E-value=5.7e-07  Score=68.01  Aligned_cols=67  Identities=16%  Similarity=0.218  Sum_probs=52.8

Q ss_pred             CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566          22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK   93 (126)
Q Consensus        22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~   93 (126)
                      +..+.+.||||+..|.......++.+|++++|+|+.+.-.. .....|..+..    .++|++++.||+|+.
T Consensus        91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~-~t~~~~~~~~~----~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCV-QTETVLRQALQ----ERIRPVLFINKVDRA  157 (836)
T ss_pred             ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCc-cHHHHHHHHHH----cCCCEEEEEEChhhh
Confidence            56799999999999988888889999999999998864222 23344555543    357999999999987

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=98.53  E-value=8e-07  Score=65.68  Aligned_cols=78  Identities=14%  Similarity=0.190  Sum_probs=60.3

Q ss_pred             ceEEEEEECC-EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCC
Q psy6566          13 SNVEEVIWKN-IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQD   91 (126)
Q Consensus        13 ~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D   91 (126)
                      ...-++.+++ ..+.++||||+-.|.......++-+|+++.|+|+.+--.. .....|.+..+.    ++|.+++.||+|
T Consensus        65 saa~s~~~~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~-QTEtv~rqa~~~----~vp~i~fiNKmD  139 (697)
T COG0480          65 SAATTLFWKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEP-QTETVWRQADKY----GVPRILFVNKMD  139 (697)
T ss_pred             eeeeEEEEcCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeee-cHHHHHHHHhhc----CCCeEEEEECcc
Confidence            3334555575 9999999999999999999999999999999998864221 223346666543    689999999999


Q ss_pred             CCCC
Q psy6566          92 IKNS   95 (126)
Q Consensus        92 ~~~~   95 (126)
                      ....
T Consensus       140 R~~a  143 (697)
T COG0480         140 RLGA  143 (697)
T ss_pred             cccc
Confidence            8763

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=98.52  E-value=7e-06  Score=47.56  Aligned_cols=75  Identities=19%  Similarity=0.281  Sum_probs=48.0

Q ss_pred             CccCceEEEEEECCEEEEEEEcCCCcch---------HHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCC
Q psy6566           9 PTIGSNVEEVIWKNIHFIMWDLGGQQSL---------RAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLS   79 (126)
Q Consensus         9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~   79 (126)
                      .|.......+.+++..+.++||||...-         .......+..+|++++|+|..++.. +...+.+..+ +    .
T Consensus        33 ~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~-~~~~~~~~~l-~----~  106 (116)
T PF01926_consen   33 TTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPIT-EDDKNILREL-K----N  106 (116)
T ss_dssp             SSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSH-HHHHHHHHHH-H----T
T ss_pred             ceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCC-HHHHHHHHHH-h----c
Confidence            3344544566779999999999996321         1112233589999999999766311 2222323333 2    5


Q ss_pred             CCeEEEEEec
Q psy6566          80 KAAVLIYANK   89 (126)
Q Consensus        80 ~~piilv~nK   89 (126)
                      +.|+++|.||
T Consensus       107 ~~~~i~v~NK  116 (116)
T PF01926_consen  107 KKPIILVLNK  116 (116)
T ss_dssp             TSEEEEEEES
T ss_pred             CCCEEEEEcC
Confidence            6899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.51  E-value=8.1e-08  Score=66.19  Aligned_cols=86  Identities=19%  Similarity=0.234  Sum_probs=53.2

Q ss_pred             CcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCC-CCHHHHHhhcCcCccc
Q psy6566          33 QQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNS-MSPVEISNLLDLTSIK  111 (126)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~-~~~~~v~~~~~~~~~~  111 (126)
                      .+.|..+...+.+.++++++|+|+.+...  .....+...+     .+.|+++|+||+|+... ...+.+..... ...+
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~--s~~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~-~~~k  121 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG--SLIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMK-KRAK  121 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCCC--CccHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHH-HHHH
Confidence            56788888888899999999999876531  1111222222     35799999999998642 22233322211 1111


Q ss_pred             CCce---EEEEeeeeeCC
Q psy6566         112 KQQW---HIQSCCALTGE  126 (126)
Q Consensus       112 ~~~~---~~~~~Sa~~~~  126 (126)
                      ..++   .++.+||++|.
T Consensus       122 ~~g~~~~~i~~vSAk~g~  139 (360)
T TIGR03597       122 ELGLKPVDIILVSAKKGN  139 (360)
T ss_pred             HcCCCcCcEEEecCCCCC
Confidence            2222   48899999874

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=98.48  E-value=8.8e-07  Score=59.83  Aligned_cols=74  Identities=18%  Similarity=0.188  Sum_probs=48.9

Q ss_pred             CCEEEEEEEcCCCcc-------hHHHHHhhccCCcEEEEEEECCCccc---HHHHHHHHHHHhC-CCCCCCCeEEEEEec
Q psy6566          21 KNIHFIMWDLGGQQS-------LRAAWSTYYTNTEFVILVIDSTDRER---ISLTKEELYKMLN-HEDLSKAAVLIYANK   89 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~~~~l~v~d~~~~~~---~~~~~~~~~~~~~-~~~~~~~piilv~nK   89 (126)
                      ..-.|.+-|.||.-.       ........++.|..+++|+|++..+.   .++......++-. ...+.+.|.++++||
T Consensus       205 ~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NK  284 (369)
T COG0536         205 GGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNK  284 (369)
T ss_pred             CCCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEec
Confidence            566799999998532       12233445788999999999986442   4444333333322 234568899999999


Q ss_pred             CCCCC
Q psy6566          90 QDIKN   94 (126)
Q Consensus        90 ~D~~~   94 (126)
                      +|+..
T Consensus       285 iD~~~  289 (369)
T COG0536         285 IDLPL  289 (369)
T ss_pred             cCCCc
Confidence            99654

>KOG0458|consensus

Probab=98.46  E-value=3.7e-07  Score=65.18  Aligned_cols=108  Identities=19%  Similarity=0.206  Sum_probs=70.4

Q ss_pred             EEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHH------HHHHHHHhCCCCCCCCeEEEEEec
Q psy6566          16 EEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT------KEELYKMLNHEDLSKAAVLIYANK   89 (126)
Q Consensus        16 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~------~~~~~~~~~~~~~~~~piilv~nK   89 (126)
                      ..+.-....+.+.|+||+..|-...-.-...||+.++|+|++.- .|+.-      .+....+++.  +.-..++++.||
T Consensus       248 ~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~-~FE~gfd~~gQtrEha~llr~--Lgi~qlivaiNK  324 (603)
T KOG0458|consen  248 TWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTG-EFESGFDPGGQTREHALLLRS--LGISQLIVAINK  324 (603)
T ss_pred             EEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcc-hhhhccCCCCchHHHHHHHHH--cCcceEEEEeec
Confidence            33444778899999999999988777778889999999998742 23221      1122333333  234578999999


Q ss_pred             CCCCC--CCCHHHHHhhcC----cC-cccCCceEEEEeeeeeCC
Q psy6566          90 QDIKN--SMSPVEISNLLD----LT-SIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        90 ~D~~~--~~~~~~v~~~~~----~~-~~~~~~~~~~~~Sa~~~~  126 (126)
                      +|+.+  +.+.+++...+.    +. -.....+.|+.||+.+|+
T Consensus       325 mD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~Ge  368 (603)
T KOG0458|consen  325 MDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGE  368 (603)
T ss_pred             ccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCC
Confidence            99875  223334333222    11 124556789999999885

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=98.46  E-value=1.4e-06  Score=65.98  Aligned_cols=67  Identities=16%  Similarity=0.181  Sum_probs=53.3

Q ss_pred             CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566          22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK   93 (126)
Q Consensus        22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~   93 (126)
                      +..+.++||||+..|.......++.+|++++|+|+.+.-... ....|..+..    .++|++++.||+|+.
T Consensus        97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~-t~~~~~~~~~----~~~p~i~~iNK~D~~  163 (843)
T PLN00116         97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQALG----ERIRPVLTVNKMDRC  163 (843)
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCccc-HHHHHHHHHH----CCCCEEEEEECCccc
Confidence            678899999999999988888899999999999988643222 2334555543    468999999999987

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=98.46  E-value=7.3e-07  Score=53.54  Aligned_cols=89  Identities=20%  Similarity=0.219  Sum_probs=54.3

Q ss_pred             EEEEcCCC----cchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC-CCCHHH
Q psy6566          26 IMWDLGGQ----QSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN-SMSPVE  100 (126)
Q Consensus        26 ~i~Dt~G~----~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~-~~~~~~  100 (126)
                      .+.||||-    ..+.......-..|+.++++.|++++.+.-.-.  +...      -+.|++=|.+|+|+.. ..+.+.
T Consensus        39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~--fa~~------f~~pvIGVITK~Dl~~~~~~i~~  110 (143)
T PF10662_consen   39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPPG--FASM------FNKPVIGVITKIDLPSDDANIER  110 (143)
T ss_pred             cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCch--hhcc------cCCCEEEEEECccCccchhhHHH
Confidence            35899994    333333334456899999999999864322111  1111      3579999999999983 323333


Q ss_pred             HHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566         101 ISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus       101 v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ..+.+...-.+    .+|++|+.+|+
T Consensus       111 a~~~L~~aG~~----~if~vS~~~~e  132 (143)
T PF10662_consen  111 AKKWLKNAGVK----EIFEVSAVTGE  132 (143)
T ss_pred             HHHHHHHcCCC----CeEEEECCCCc
Confidence            33333222121    36999999885

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK07560 elongation factor EF-2; Reviewed

Probab=98.45  E-value=1.4e-06  Score=65.08  Aligned_cols=69  Identities=17%  Similarity=0.184  Sum_probs=52.3

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~   94 (126)
                      ++..+.+.||||+..|.......++.+|++++|+|+.+.-.. .....|....+.    +.|.+++.||+|+..
T Consensus        85 ~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~-~t~~~~~~~~~~----~~~~iv~iNK~D~~~  153 (731)
T PRK07560         85 KEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMP-QTETVLRQALRE----RVKPVLFINKVDRLI  153 (731)
T ss_pred             CcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCc-cHHHHHHHHHHc----CCCeEEEEECchhhc
Confidence            468899999999999988888889999999999998764222 233345444332    457789999999763

>cd01858 NGP_1 NGP-1

Probab=98.40  E-value=1.4e-06  Score=53.29  Aligned_cols=76  Identities=14%  Similarity=0.127  Sum_probs=43.8

Q ss_pred             hccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeee
Q psy6566          43 YYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCA  122 (126)
Q Consensus        43 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa  122 (126)
                      .++.+|.+++|+|+.++..-.  ...+...+... ..+.|++++.||+|+............+..    ......+.+||
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~--~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~----~~~~~~~~iSa   77 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTR--CKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILSK----EYPTIAFHASI   77 (157)
T ss_pred             hhhhCCEEEEEEECCCCcccc--CHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHhc----CCcEEEEEeec
Confidence            478899999999998763211  11233333321 245899999999999653211122222221    12233577898


Q ss_pred             eeC
Q psy6566         123 LTG  125 (126)
Q Consensus       123 ~~~  125 (126)
                      +++
T Consensus        78 ~~~   80 (157)
T cd01858          78 NNP   80 (157)
T ss_pred             ccc
Confidence            865

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.38  E-value=1.2e-06  Score=60.10  Aligned_cols=77  Identities=17%  Similarity=0.208  Sum_probs=51.2

Q ss_pred             ccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeee
Q psy6566          44 YTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCAL  123 (126)
Q Consensus        44 ~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  123 (126)
                      ..++|.+++|++.....++..+..|+... ..   .++|.++++||+|+........+..... . ....+++++.+||+
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a-~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~-~-y~~~g~~v~~vSA~  191 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVAC-ET---LGIEPLIVLNKIDLLDDEGRAFVNEQLD-I-YRNIGYRVLMVSSH  191 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHH-Hh---cCCCEEEEEECccCCCcHHHHHHHHHHH-H-HHhCCCeEEEEeCC
Confidence            35689999999987777888888776544 22   5689999999999975321111111111 1 12345689999999


Q ss_pred             eCC
Q psy6566         124 TGE  126 (126)
Q Consensus       124 ~~~  126 (126)
                      +++
T Consensus       192 tg~  194 (347)
T PRK12288        192 TGE  194 (347)
T ss_pred             CCc
Confidence            864

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.37  E-value=3.4e-06  Score=58.67  Aligned_cols=111  Identities=13%  Similarity=0.036  Sum_probs=74.7

Q ss_pred             CCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCC---cccHHHHHHHHHHHhCCCCCCCCeEE
Q psy6566           8 SPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD---RERISLTKEELYKMLNHEDLSKAAVL   84 (126)
Q Consensus         8 ~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~pii   84 (126)
                      ..|+...++....++..+.|.|.+|.+++-...-.-+...|.++++++.++   +.+.+.+    . ++..-  .-...+
T Consensus        35 G~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL----~-iLdll--gi~~gi  107 (447)
T COG3276          35 GITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHL----L-ILDLL--GIKNGI  107 (447)
T ss_pred             CceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHH----H-HHHhc--CCCceE
Confidence            456777777777777799999999999998777777888999999999854   3333322    1 22221  334569


Q ss_pred             EEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          85 IYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        85 lv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ++.+|+|..++...++.......... -...+++.+||++|+
T Consensus       108 ivltk~D~~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~  148 (447)
T COG3276         108 IVLTKADRVDEARIEQKIKQILADLS-LANAKIFKTSAKTGR  148 (447)
T ss_pred             EEEeccccccHHHHHHHHHHHHhhcc-cccccccccccccCC
Confidence            99999999875444443333222211 334567899998875

>cd01882 BMS1 Bms1

Probab=98.35  E-value=2.8e-06  Score=55.05  Aligned_cols=97  Identities=12%  Similarity=0.050  Sum_probs=56.5

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEecCCCCCCC-CH
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLIYANKQDIKNSM-SP   98 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~-~~   98 (126)
                      ++..+.+.||||.-  ..+.. ..+.+|.+++++|......... .. +...+..   .+.| ++++.||+|+.+.. ..
T Consensus        81 ~~~~i~~vDtPg~~--~~~l~-~ak~aDvVllviDa~~~~~~~~-~~-i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~  152 (225)
T cd01882          81 KKRRLTFIECPNDI--NAMID-IAKVADLVLLLIDASFGFEMET-FE-FLNILQV---HGFPRVMGVLTHLDLFKKNKTL  152 (225)
T ss_pred             CCceEEEEeCCchH--HHHHH-HHHhcCEEEEEEecCcCCCHHH-HH-HHHHHHH---cCCCeEEEEEeccccCCcHHHH
Confidence            67889999999863  33333 3688999999999875433222 22 2233332   3466 45599999986421 12


Q ss_pred             HHHHhhcCcCcc--cCCceEEEEeeeeeC
Q psy6566          99 VEISNLLDLTSI--KKQQWHIQSCCALTG  125 (126)
Q Consensus        99 ~~v~~~~~~~~~--~~~~~~~~~~Sa~~~  125 (126)
                      .++...+...+.  .....+++.+||++.
T Consensus       153 ~~~~~~l~~~~~~~~~~~~ki~~iSa~~~  181 (225)
T cd01882         153 RKTKKRLKHRFWTEVYQGAKLFYLSGIVH  181 (225)
T ss_pred             HHHHHHHHHHHHHhhCCCCcEEEEeeccC
Confidence            222222211111  112357999998864

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=98.35  E-value=8e-06  Score=59.60  Aligned_cols=103  Identities=17%  Similarity=0.205  Sum_probs=70.4

Q ss_pred             CccCceEEEEEECCEEEEEEEcCCCcch------HHHHHhhc--cCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCC
Q psy6566           9 PTIGSNVEEVIWKNIHFIMWDLGGQQSL------RAAWSTYY--TNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK   80 (126)
Q Consensus         9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~------~~~~~~~~--~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~   80 (126)
                      .|++-....+..++-.+++.|+||--..      +...+.|+  ..+|.++-|+|+++.+   ....+..++++.    +
T Consensus        36 vTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLe---RnLyltlQLlE~----g  108 (653)
T COG0370          36 VTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLE---RNLYLTLQLLEL----G  108 (653)
T ss_pred             eeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHH---HHHHHHHHHHHc----C
Confidence            4555555666678888999999995332      23344444  3679999999998743   444455666654    6


Q ss_pred             CeEEEEEecCCCCCC----CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          81 AAVLIYANKQDIKNS----MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        81 ~piilv~nK~D~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +|++++.|.+|....    ++.+...+        ..+++++.+||++|+
T Consensus       109 ~p~ilaLNm~D~A~~~Gi~ID~~~L~~--------~LGvPVv~tvA~~g~  150 (653)
T COG0370         109 IPMILALNMIDEAKKRGIRIDIEKLSK--------LLGVPVVPTVAKRGE  150 (653)
T ss_pred             CCeEEEeccHhhHHhcCCcccHHHHHH--------HhCCCEEEEEeecCC
Confidence            899999999997653    22233333        346789999999874

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=98.30  E-value=1.3e-06  Score=55.36  Aligned_cols=64  Identities=20%  Similarity=0.289  Sum_probs=40.4

Q ss_pred             EEEEEEEcCCCcchHH-----HHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566          23 IHFIMWDLGGQQSLRA-----AWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK   93 (126)
Q Consensus        23 ~~~~i~Dt~G~~~~~~-----~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~   93 (126)
                      ..+.+|||+|......     +....+..+|.++++.+.    .+.+....+.+.++.   .+.|+++|+||+|+.
T Consensus        52 ~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~----~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~  120 (197)
T cd04104          52 PNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISST----RFSSNDVKLAKAIQC---MGKKFYFVRTKVDRD  120 (197)
T ss_pred             CCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCC----CCCHHHHHHHHHHHH---hCCCEEEEEecccch
Confidence            4689999999754322     222236778988887432    233333334344443   257999999999984

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>COG0218 Predicted GTPase [General function prediction only]

Probab=98.26  E-value=2.3e-05  Score=49.47  Aligned_cols=66  Identities=21%  Similarity=0.300  Sum_probs=45.0

Q ss_pred             EEEEEcCC----------CcchHHHHHhhcc---CCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCC
Q psy6566          25 FIMWDLGG----------QQSLRAAWSTYYT---NTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQD   91 (126)
Q Consensus        25 ~~i~Dt~G----------~~~~~~~~~~~~~---~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D   91 (126)
                      +.+.|.||          ++.+..+...|++   .-.+++.++|+-.+..  .......+.+..   .++|+++++||+|
T Consensus        72 ~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~--~~D~em~~~l~~---~~i~~~vv~tK~D  146 (200)
T COG0218          72 LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPK--DLDREMIEFLLE---LGIPVIVVLTKAD  146 (200)
T ss_pred             EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCc--HHHHHHHHHHHH---cCCCeEEEEEccc
Confidence            88999999          4555666677765   3567888889754432  222223334444   5799999999999


Q ss_pred             CCCC
Q psy6566          92 IKNS   95 (126)
Q Consensus        92 ~~~~   95 (126)
                      ..+.
T Consensus       147 Ki~~  150 (200)
T COG0218         147 KLKK  150 (200)
T ss_pred             cCCh
Confidence            8763

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.25  E-value=3.2e-06  Score=51.60  Aligned_cols=70  Identities=13%  Similarity=0.150  Sum_probs=41.2

Q ss_pred             cEEEEEEECCCcccHHHHHHHHH-HHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          48 EFVILVIDSTDRERISLTKEELY-KMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        48 ~~~l~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |.+++|+|+.++.+....  ++. ..+..   .+.|++++.||+|+...   +++..... .+.......++.+||++|.
T Consensus         1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~---~~~p~IiVlNK~Dl~~~---~~~~~~~~-~~~~~~~~~ii~vSa~~~~   71 (155)
T cd01849           1 DVILEVLDARDPLGTRSP--DIERVLIKE---KGKKLILVLNKADLVPK---EVLRKWLA-YLRHSYPTIPFKISATNGQ   71 (155)
T ss_pred             CEEEEEEeccCCccccCH--HHHHHHHhc---CCCCEEEEEechhcCCH---HHHHHHHH-HHHhhCCceEEEEeccCCc
Confidence            679999999877544322  232 23333   46899999999999643   22211110 0111123467889999873

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=98.17  E-value=7.8e-06  Score=41.23  Aligned_cols=45  Identities=16%  Similarity=0.268  Sum_probs=28.3

Q ss_pred             cCCcEEEEEEECCCc--ccHHHHHHHHHHHhCCCCCCCCeEEEEEecCC
Q psy6566          45 TNTEFVILVIDSTDR--ERISLTKEELYKMLNHEDLSKAAVLIYANKQD   91 (126)
Q Consensus        45 ~~~~~~l~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D   91 (126)
                      +-.+.++|++|.++.  -+.++...+++++...  .++.|+++|.||+|
T Consensus        12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~--F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPL--FPNKPVIVVLNKID   58 (58)
T ss_dssp             GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH--TTTS-EEEEE--TT
T ss_pred             hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH--cCCCCEEEEEeccC
Confidence            347899999999975  3667666666666443  25899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>KOG1423|consensus

Probab=98.16  E-value=1.3e-05  Score=53.76  Aligned_cols=74  Identities=19%  Similarity=0.253  Sum_probs=46.0

Q ss_pred             EEECCEEEEEEEcCCCcchHH------------HHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEE
Q psy6566          18 VIWKNIHFIMWDLGGQQSLRA------------AWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLI   85 (126)
Q Consensus        18 ~~~~~~~~~i~Dt~G~~~~~~------------~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piil   85 (126)
                      +.-+.+++.++||||.-.-..            .....+..||.++.|+|+++....-.-+  +...++..  ..+|-++
T Consensus       115 ~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~--vl~~l~~y--s~ips~l  190 (379)
T KOG1423|consen  115 ITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPR--VLHMLEEY--SKIPSIL  190 (379)
T ss_pred             EecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChH--HHHHHHHH--hcCCcee
Confidence            334889999999999422111            1233477899999999998531111110  11122221  5789999


Q ss_pred             EEecCCCCCC
Q psy6566          86 YANKQDIKNS   95 (126)
Q Consensus        86 v~nK~D~~~~   95 (126)
                      +.||.|+...
T Consensus       191 vmnkid~~k~  200 (379)
T KOG1423|consen  191 VMNKIDKLKQ  200 (379)
T ss_pred             eccchhcchh
Confidence            9999997654

>cd01856 YlqF YlqF

Probab=98.15  E-value=3.5e-06  Score=52.29  Aligned_cols=76  Identities=17%  Similarity=0.117  Sum_probs=44.8

Q ss_pred             HHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEE
Q psy6566          38 AAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHI  117 (126)
Q Consensus        38 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~  117 (126)
                      ......++.||.+++|+|+.++...... . +...+     .+.|++++.||+|+..........+.+.     .....+
T Consensus        11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~-~-i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~-----~~~~~v   78 (171)
T cd01856          11 RQIKEKLKLVDLVIEVRDARIPLSSRNP-L-LEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFE-----SKGEKV   78 (171)
T ss_pred             HHHHHHHhhCCEEEEEeeccCccCcCCh-h-hHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHH-----hcCCeE
Confidence            3445568899999999999765432211 1 22221     3578999999999964311111111111     112357


Q ss_pred             EEeeeeeC
Q psy6566         118 QSCCALTG  125 (126)
Q Consensus       118 ~~~Sa~~~  125 (126)
                      +.+||+++
T Consensus        79 i~iSa~~~   86 (171)
T cd01856          79 LFVNAKSG   86 (171)
T ss_pred             EEEECCCc
Confidence            88999876

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG0468|consensus

Probab=98.13  E-value=5.2e-06  Score=60.65  Aligned_cols=68  Identities=16%  Similarity=0.238  Sum_probs=53.3

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK   93 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~   93 (126)
                      +...+++.||||+-.|....-..++.+|++++++|+.+--.+. ....+++..+    .+.|+++|+||.|+.
T Consensus       195 KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmln-tEr~ikhaiq----~~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  195 KSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLN-TERIIKHAIQ----NRLPIVVVINKVDRL  262 (971)
T ss_pred             ceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceee-HHHHHHHHHh----ccCcEEEEEehhHHH
Confidence            4567899999999999988888899999999999988754333 2334555554    468999999999953

>KOG1490|consensus

Probab=98.12  E-value=2.7e-06  Score=60.23  Aligned_cols=110  Identities=12%  Similarity=0.063  Sum_probs=65.3

Q ss_pred             ceEEEEEECCEEEEEEEcCCCcch----HHHHHh-----hccCCcEEEEEEECCCc--ccHHHHHHHHHHHhCCCCCCCC
Q psy6566          13 SNVEEVIWKNIHFIMWDLGGQQSL----RAAWST-----YYTNTEFVILVIDSTDR--ERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus        13 ~~~~~~~~~~~~~~i~Dt~G~~~~----~~~~~~-----~~~~~~~~l~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .....+..+-..+++.||||.-.-    +...+.     ..+--.+|+|+.|+++.  -+.++..+++..+--  -..+.
T Consensus       205 L~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKp--LFaNK  282 (620)
T KOG1490|consen  205 LLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKP--LFANK  282 (620)
T ss_pred             hhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHH--HhcCC
Confidence            444444456677889999995221    111111     11223568999999875  466666666655532  23689


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeee
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALT  124 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  124 (126)
                      |+++|+||+|+.......+-.+.+-.......+++++++|..+
T Consensus       283 ~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~  325 (620)
T KOG1490|consen  283 VTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQ  325 (620)
T ss_pred             ceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccc
Confidence            9999999999876543333222222223344557788888654

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=98.10  E-value=4e-05  Score=51.79  Aligned_cols=52  Identities=17%  Similarity=0.213  Sum_probs=36.5

Q ss_pred             ccCceEEEEEECCEEEEEEEcCCCcch-------HHHHHhhccCCcEEEEEEECCCccc
Q psy6566          10 TIGSNVEEVIWKNIHFIMWDLGGQQSL-------RAAWSTYYTNTEFVILVIDSTDRER   61 (126)
Q Consensus        10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~~~~~l~v~d~~~~~~   61 (126)
                      |......-+..++..+|+.|+||.-.-       ........++||.+++|+|+.....
T Consensus        97 Tl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~  155 (365)
T COG1163          97 TLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPH  155 (365)
T ss_pred             ecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChh
Confidence            333334446669999999999984221       2334556899999999999986544

>KOG1191|consensus

Probab=98.10  E-value=6.9e-05  Score=53.08  Aligned_cols=87  Identities=17%  Similarity=0.170  Sum_probs=54.5

Q ss_pred             CccCceEEEEEECCEEEEEEEcCCCcchH-----H----HHHhhccCCcEEEEEEECCC--cccHHHHHHHHHHHhC---
Q psy6566           9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLR-----A----AWSTYYTNTEFVILVIDSTD--RERISLTKEELYKMLN---   74 (126)
Q Consensus         9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~-----~----~~~~~~~~~~~~l~v~d~~~--~~~~~~~~~~~~~~~~---   74 (126)
                      +|-+.-.-.+++++.++.+.||+|...-.     .    ......+.+|.+++|+|+..  -++-..+...+...-.   
T Consensus       302 TTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~  381 (531)
T KOG1191|consen  302 TTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLV  381 (531)
T ss_pred             cchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceE
Confidence            44444455677899999999999976611     1    23344778999999999833  2222222221222111   


Q ss_pred             --CCCCCCCeEEEEEecCCCCCC
Q psy6566          75 --HEDLSKAAVLIYANKQDIKNS   95 (126)
Q Consensus        75 --~~~~~~~piilv~nK~D~~~~   95 (126)
                        .+.+...|++++.||+|+...
T Consensus       382 ~~~~~~~~~~~i~~~nk~D~~s~  404 (531)
T KOG1191|consen  382 VIVNKMEKQRIILVANKSDLVSK  404 (531)
T ss_pred             EEeccccccceEEEechhhccCc
Confidence              122345799999999998764

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=98.04  E-value=0.00016  Score=45.78  Aligned_cols=85  Identities=13%  Similarity=0.110  Sum_probs=52.7

Q ss_pred             CccCceEEEEEECCEEEEEEEcCCCcchH-------H-H---HHhhccCCcEEEEEEECCCcc-cHHHHHHHHHHHhCCC
Q psy6566           9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLR-------A-A---WSTYYTNTEFVILVIDSTDRE-RISLTKEELYKMLNHE   76 (126)
Q Consensus         9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~-~---~~~~~~~~~~~l~v~d~~~~~-~~~~~~~~~~~~~~~~   76 (126)
                      .|..+......+++..+.++||||.....       . +   +.....++|++++|+++.+.. ....+.+++.+.+...
T Consensus        35 ~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~  114 (196)
T cd01852          35 VTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGEK  114 (196)
T ss_pred             cccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChH
Confidence            45556666677789999999999964331       1 1   122246789999999987621 2222333343333321


Q ss_pred             CCCCCeEEEEEecCCCCCC
Q psy6566          77 DLSKAAVLIYANKQDIKNS   95 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~   95 (126)
                        .-.+++++.|+.|....
T Consensus       115 --~~~~~ivv~T~~d~l~~  131 (196)
T cd01852         115 --VLDHTIVLFTRGDDLEG  131 (196)
T ss_pred             --hHhcEEEEEECccccCC
Confidence              12578899999996553

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>KOG1144|consensus

Probab=98.02  E-value=1.6e-05  Score=58.86  Aligned_cols=62  Identities=23%  Similarity=0.293  Sum_probs=50.0

Q ss_pred             EEEEEEcCCCcchHHHHHhhccCCcEEEEEEECC---CcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566          24 HFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDST---DRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK   93 (126)
Q Consensus        24 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~---~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~   93 (126)
                      -+.++||||++.|..++.+.-.-||.+|+|+|+.   ++.+.+.+.     +++.   .+.|+|+.+||+|..
T Consensus       541 g~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~-----lLR~---rktpFivALNKiDRL  605 (1064)
T KOG1144|consen  541 GLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESIN-----LLRM---RKTPFIVALNKIDRL  605 (1064)
T ss_pred             eeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHH-----HHHh---cCCCeEEeehhhhhh
Confidence            3779999999999999998888999999999986   355555543     2333   568999999999954

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.01  E-value=1.8e-05  Score=52.80  Aligned_cols=75  Identities=15%  Similarity=0.108  Sum_probs=45.4

Q ss_pred             HHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEE
Q psy6566          39 AWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQ  118 (126)
Q Consensus        39 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~  118 (126)
                      .....++.+|.+++|+|+..+.+.+..  .+...+     .+.|+++|.||+|+.+..........+.     ..+..++
T Consensus        14 ~~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~-----~~~~~vi   81 (276)
T TIGR03596        14 EIKEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFE-----EKGIKAL   81 (276)
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHH-----HcCCeEE
Confidence            344568899999999998765433221  233333     2579999999999964311112211221     1234678


Q ss_pred             EeeeeeC
Q psy6566         119 SCCALTG  125 (126)
Q Consensus       119 ~~Sa~~~  125 (126)
                      .+||+++
T Consensus        82 ~iSa~~~   88 (276)
T TIGR03596        82 AINAKKG   88 (276)
T ss_pred             EEECCCc
Confidence            8999876

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=97.89  E-value=4.3e-06  Score=48.66  Aligned_cols=55  Identities=16%  Similarity=0.198  Sum_probs=39.9

Q ss_pred             HHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566          37 RAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        37 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~   94 (126)
                      ......+.+.++.++.+++.+..++++..  |...++... ..+.|.++++||.|+..
T Consensus        37 ~~~~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~-k~dl~~~~~~nk~dl~~   91 (124)
T smart00010       37 DVYDPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGN-KSDLPILVGGNRDVLEE   91 (124)
T ss_pred             hhccccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcC-CCCCcEEEEeechhhHh
Confidence            33445678899999999999988888665  444443332 25788999999999843

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=97.87  E-value=3.7e-05  Score=51.61  Aligned_cols=74  Identities=16%  Similarity=0.141  Sum_probs=44.8

Q ss_pred             HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEE
Q psy6566          40 WSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQS  119 (126)
Q Consensus        40 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~  119 (126)
                      ....++.+|.+++|+|+..+.+.+.  ..+...+     .+.|+++|.||+|+............+.     ..+.+++.
T Consensus        18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~-----~~~~~vi~   85 (287)
T PRK09563         18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFE-----EQGIKALA   85 (287)
T ss_pred             HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHH-----HcCCeEEE
Confidence            3456889999999999876543222  1233333     2579999999999864311112222211     11346788


Q ss_pred             eeeeeC
Q psy6566         120 CCALTG  125 (126)
Q Consensus       120 ~Sa~~~  125 (126)
                      +||+++
T Consensus        86 vSa~~~   91 (287)
T PRK09563         86 INAKKG   91 (287)
T ss_pred             EECCCc
Confidence            898876

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.86  E-value=2.8e-05  Score=52.54  Aligned_cols=98  Identities=18%  Similarity=0.137  Sum_probs=60.8

Q ss_pred             EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCC----CH
Q psy6566          23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSM----SP   98 (126)
Q Consensus        23 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~----~~   98 (126)
                      ..+.|.|.||+|-.-....+-..--|+.++|++++++-.--+.++++..+ +--  .-..++++.||+|+....    +.
T Consensus        86 R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-eIi--gik~iiIvQNKIDlV~~E~AlE~y  162 (415)
T COG5257          86 RRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL-EII--GIKNIIIVQNKIDLVSRERALENY  162 (415)
T ss_pred             EEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH-hhh--ccceEEEEecccceecHHHHHHHH
Confidence            35789999999876543333233358999999999865444444444333 221  345799999999997631    12


Q ss_pred             HHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          99 VEISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        99 ~~v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      +++.+...-..+  .+.+++.+||..+
T Consensus       163 ~qIk~FvkGt~A--e~aPIIPiSA~~~  187 (415)
T COG5257         163 EQIKEFVKGTVA--ENAPIIPISAQHK  187 (415)
T ss_pred             HHHHHHhccccc--CCCceeeehhhhc
Confidence            233333332322  3457899998754

>smart00053 DYNc Dynamin, GTPase

Probab=97.85  E-value=0.00089  Score=43.91  Aligned_cols=71  Identities=10%  Similarity=0.121  Sum_probs=45.5

Q ss_pred             CCEEEEEEEcCCCcc-------------hHHHHHhhccC-CcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEE
Q psy6566          21 KNIHFIMWDLGGQQS-------------LRAAWSTYYTN-TEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIY   86 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~-~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv   86 (126)
                      ....+.+.||||...             ...+...|++. .+.+++|+|+...-.-.+..+....+ ..   .+.|+++|
T Consensus       123 ~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~l-d~---~~~rti~V  198 (240)
T smart00053      123 HVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEV-DP---QGERTIGV  198 (240)
T ss_pred             CCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHH-HH---cCCcEEEE
Confidence            557899999999742             22356677874 56899999875422222222222222 22   46899999


Q ss_pred             EecCCCCCC
Q psy6566          87 ANKQDIKNS   95 (126)
Q Consensus        87 ~nK~D~~~~   95 (126)
                      .||.|....
T Consensus       199 iTK~D~~~~  207 (240)
T smart00053      199 ITKLDLMDE  207 (240)
T ss_pred             EECCCCCCc
Confidence            999998763

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=97.84  E-value=1.1e-05  Score=52.77  Aligned_cols=67  Identities=18%  Similarity=0.177  Sum_probs=36.5

Q ss_pred             EEEEEEcCCCcchHHHHHhhc--------cCCcEEEEEEECCCccc---HHHHH-HHHHHHhCCCCCCCCeEEEEEecCC
Q psy6566          24 HFIMWDLGGQQSLRAAWSTYY--------TNTEFVILVIDSTDRER---ISLTK-EELYKMLNHEDLSKAAVLIYANKQD   91 (126)
Q Consensus        24 ~~~i~Dt~G~~~~~~~~~~~~--------~~~~~~l~v~d~~~~~~---~~~~~-~~~~~~~~~~~~~~~piilv~nK~D   91 (126)
                      .+.++|||||.++-..|...-        ...-++++++|+....+   +-... .-..-+.+    .+.|.+.+.||+|
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~----~~lP~vnvlsK~D  167 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLR----LELPHVNVLSKID  167 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHH----HTSEEEEEE--GG
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhh----CCCCEEEeeeccC
Confidence            688999999988877665443        45668999999764433   32221 11111221    3689999999999


Q ss_pred             CCC
Q psy6566          92 IKN   94 (126)
Q Consensus        92 ~~~   94 (126)
                      +.+
T Consensus       168 l~~  170 (238)
T PF03029_consen  168 LLS  170 (238)
T ss_dssp             GS-
T ss_pred             ccc
Confidence            976

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PRK13796 GTPase YqeH; Provisional

Probab=97.83  E-value=4.6e-05  Score=52.86  Aligned_cols=84  Identities=18%  Similarity=0.224  Sum_probs=45.3

Q ss_pred             cchHHHHHhhccCCc-EEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCC-CCHHHHHhhcCcCccc
Q psy6566          34 QSLRAAWSTYYTNTE-FVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNS-MSPVEISNLLDLTSIK  111 (126)
Q Consensus        34 ~~~~~~~~~~~~~~~-~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~-~~~~~v~~~~~~~~~~  111 (126)
                      +.|...... +..++ .+++|+|+.+...  .....+..+.     .+.|+++|+||+|+... ...+.+..... ...+
T Consensus        57 ~~~~~~l~~-i~~~~~lIv~VVD~~D~~~--s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~-~~~k  127 (365)
T PRK13796         57 DDFLKLLNG-IGDSDALVVNVVDIFDFNG--SWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLR-QEAK  127 (365)
T ss_pred             HHHHHHHHh-hcccCcEEEEEEECccCCC--chhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHH-HHHH
Confidence            345554444 44444 8999999877431  1122233322     35789999999999642 22222222111 1111


Q ss_pred             CCce---EEEEeeeeeCC
Q psy6566         112 KQQW---HIQSCCALTGE  126 (126)
Q Consensus       112 ~~~~---~~~~~Sa~~~~  126 (126)
                      ..++   .++.+||++|.
T Consensus       128 ~~g~~~~~v~~vSAk~g~  145 (365)
T PRK13796        128 ELGLRPVDVVLISAQKGH  145 (365)
T ss_pred             hcCCCcCcEEEEECCCCC
Confidence            2222   57899999863

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=97.77  E-value=0.00012  Score=44.92  Aligned_cols=66  Identities=23%  Similarity=0.245  Sum_probs=44.6

Q ss_pred             CCEEEEEEEcCCCcc----hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecC
Q psy6566          21 KNIHFIMWDLGGQQS----LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQ   90 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~----~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~   90 (126)
                      ....+.++||||...    ...++..+++.+|++++|.+++..-+-.+... +.+....   ....+++|.||.
T Consensus        99 ~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~-l~~~~~~---~~~~~i~V~nk~  168 (168)
T PF00350_consen   99 LLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEF-LKQMLDP---DKSRTIFVLNKA  168 (168)
T ss_dssp             TSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHH-HHHHHTT---TCSSEEEEEE-G
T ss_pred             cccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHH-HHHHhcC---CCCeEEEEEcCC
Confidence            345689999999633    22567778899999999999987544444433 4444443   234488899984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>PRK01889 GTPase RsgA; Reviewed

Probab=97.76  E-value=0.00018  Score=49.84  Aligned_cols=74  Identities=19%  Similarity=0.128  Sum_probs=44.3

Q ss_pred             ccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeee
Q psy6566          44 YTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCAL  123 (126)
Q Consensus        44 ~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  123 (126)
                      ..++|.+++|+++...-....+..++..+ ..   .++|.++++||+||.+.  ..+........   ..+++++.+||+
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a-~~---~~i~piIVLNK~DL~~~--~~~~~~~~~~~---~~g~~Vi~vSa~  180 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALA-WE---SGAEPVIVLTKADLCED--AEEKIAEVEAL---APGVPVLAVSAL  180 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHH-HH---cCCCEEEEEEChhcCCC--HHHHHHHHHHh---CCCCcEEEEECC
Confidence            56789999999986333333333333333 22   46777999999999753  11111111111   335688999998


Q ss_pred             eCC
Q psy6566         124 TGE  126 (126)
Q Consensus       124 ~~~  126 (126)
                      +|.
T Consensus       181 ~g~  183 (356)
T PRK01889        181 DGE  183 (356)
T ss_pred             CCc
Confidence            763

>KOG1424|consensus

Probab=97.71  E-value=7.7e-05  Score=53.13  Aligned_cols=80  Identities=16%  Similarity=0.272  Sum_probs=54.6

Q ss_pred             hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCce
Q psy6566          36 LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQW  115 (126)
Q Consensus        36 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~  115 (126)
                      ++.+|+ .++..|.||.++|+-++--|....  +..+..... +....+++.||.||..+......++++.     .+++
T Consensus       165 WRQLWR-VlErSDivvqIVDARnPllfr~~d--Le~Yvke~d-~~K~~~LLvNKaDLl~~~qr~aWa~YF~-----~~ni  235 (562)
T KOG1424|consen  165 WRQLWR-VLERSDIVVQIVDARNPLLFRSPD--LEDYVKEVD-PSKANVLLVNKADLLPPEQRVAWAEYFR-----QNNI  235 (562)
T ss_pred             HHHHHH-HHhhcceEEEEeecCCccccCChh--HHHHHhccc-cccceEEEEehhhcCCHHHHHHHHHHHH-----hcCc
Confidence            445565 378899999999998875544332  344444322 4466789999999988655555666665     4457


Q ss_pred             EEEEeeeee
Q psy6566         116 HIQSCCALT  124 (126)
Q Consensus       116 ~~~~~Sa~~  124 (126)
                      +++..||..
T Consensus       236 ~~vf~SA~~  244 (562)
T KOG1424|consen  236 PVVFFSALA  244 (562)
T ss_pred             eEEEEeccc
Confidence            888888864

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=97.70  E-value=0.00028  Score=47.41  Aligned_cols=78  Identities=22%  Similarity=0.207  Sum_probs=52.7

Q ss_pred             ccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCC---cccHHHHHHHHHHHhCCCCCCCC-eEEE
Q psy6566          10 TIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD---RERISLTKEELYKMLNHEDLSKA-AVLI   85 (126)
Q Consensus        10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~-piil   85 (126)
                      ||...+-.++..+..+...|+||+..|-+..-.-..+.|+.|+|+.+++   |.+.+.+       +-... -+. -+++
T Consensus        62 TIntahveyet~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi-------Llarq-vGvp~ivv  133 (394)
T COG0050          62 TINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI-------LLARQ-VGVPYIVV  133 (394)
T ss_pred             eeccceeEEecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh-------hhhhh-cCCcEEEE
Confidence            3333344444488999999999999887765555667899999998886   3333322       11111 244 5888


Q ss_pred             EEecCCCCCC
Q psy6566          86 YANKQDIKNS   95 (126)
Q Consensus        86 v~nK~D~~~~   95 (126)
                      +.||+|+...
T Consensus       134 flnK~Dmvdd  143 (394)
T COG0050         134 FLNKVDMVDD  143 (394)
T ss_pred             EEecccccCc
Confidence            9999999763

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=97.69  E-value=0.00017  Score=49.37  Aligned_cols=94  Identities=24%  Similarity=0.238  Sum_probs=53.6

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHH-
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPV-   99 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~-   99 (126)
                      .+..+.+.||+|...-...   ....+|.++++.+....+......   ...++      +.-++|+||+|+.+..... 
T Consensus       147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E------~aDIiVVNKaDl~~~~~a~~  214 (332)
T PRK09435        147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIME------LADLIVINKADGDNKTAARR  214 (332)
T ss_pred             cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhhh------hhheEEeehhcccchhHHHH
Confidence            5788999999998643322   456799999997633333322221   11222      2338999999987532222 


Q ss_pred             ---HHHhhcCcCccc--CCceEEEEeeeeeCC
Q psy6566         100 ---EISNLLDLTSIK--KQQWHIQSCCALTGE  126 (126)
Q Consensus       100 ---~v~~~~~~~~~~--~~~~~~~~~Sa~~~~  126 (126)
                         ++...+......  ....+++.+||++|+
T Consensus       215 ~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~  246 (332)
T PRK09435        215 AAAEYRSALRLLRPKDPGWQPPVLTCSALEGE  246 (332)
T ss_pred             HHHHHHHHHhcccccccCCCCCEEEEECCCCC
Confidence               222222211101  122479999999874

>TIGR00750 lao LAO/AO transport system ATPase

Probab=97.68  E-value=0.00029  Score=47.62  Aligned_cols=94  Identities=11%  Similarity=0.010  Sum_probs=53.3

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHH
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVE  100 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~  100 (126)
                      .+..+.|.||+|.-...   ......+|.++++.+.   .+.+++..+...+      ..+|.++++||+|+........
T Consensus       125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~---~~~~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~  192 (300)
T TIGR00750       125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTIP---GTGDDLQGIKAGL------MEIADIYVVNKADGEGATNVTI  192 (300)
T ss_pred             CCCCEEEEeCCCCchhh---hHHHHhhceEEEEecC---CccHHHHHHHHHH------hhhccEEEEEcccccchhHHHH
Confidence            57889999999964222   2246668888887543   3334443333222      3567799999999976432111


Q ss_pred             HHhhc----CcCccc--CCceEEEEeeeeeCC
Q psy6566         101 ISNLL----DLTSIK--KQQWHIQSCCALTGE  126 (126)
Q Consensus       101 v~~~~----~~~~~~--~~~~~~~~~Sa~~~~  126 (126)
                      ....+    .....+  ....+++.+||++|+
T Consensus       193 ~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~  224 (300)
T TIGR00750       193 ARLMLALALEEIRRREDGWRPPVLTTSAVEGR  224 (300)
T ss_pred             HHHHHHHHHhhccccccCCCCCEEEEEccCCC
Confidence            11111    110011  112358999999874

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>KOG0465|consensus

Probab=97.59  E-value=0.00022  Score=51.90  Aligned_cols=78  Identities=15%  Similarity=0.170  Sum_probs=58.4

Q ss_pred             EEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566          15 VEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        15 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~   94 (126)
                      ...+.+.+..+.++||||+-.|.-.....++-.|++++++|....- -......|+++.+.    ++|.+...||+|..+
T Consensus        96 At~~~w~~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GV-qsQt~tV~rQ~~ry----~vP~i~FiNKmDRmG  170 (721)
T KOG0465|consen   96 ATYFTWRDYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGV-ESQTETVWRQMKRY----NVPRICFINKMDRMG  170 (721)
T ss_pred             eeeeeeccceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccce-ehhhHHHHHHHHhc----CCCeEEEEehhhhcC
Confidence            3445558889999999999999888888899999999999876431 11233446666443    689999999999887


Q ss_pred             CCC
Q psy6566          95 SMS   97 (126)
Q Consensus        95 ~~~   97 (126)
                      ...
T Consensus       171 a~~  173 (721)
T KOG0465|consen  171 ASP  173 (721)
T ss_pred             CCh
Confidence            543

>KOG0467|consensus

Probab=97.58  E-value=0.00013  Score=54.27  Aligned_cols=80  Identities=15%  Similarity=0.167  Sum_probs=56.5

Q ss_pred             cCCccCceEEEEEE----CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           7 TSPTIGSNVEEVIW----KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         7 ~~pTi~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      .+-|-|+..+.-.+    ++..+.++|+||+-.|........+-+|+.+.++|+.+---.+     ...+++..+..+..
T Consensus        52 deq~rgitmkss~is~~~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~q-----t~~vlrq~~~~~~~  126 (887)
T KOG0467|consen   52 DEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQ-----TYAVLRQAWIEGLK  126 (887)
T ss_pred             hhhhhceeeeccccccccCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchh-----HHHHHHHHHHccCc
Confidence            34456666554333    8899999999999999999998889999999999987632111     11112221224566


Q ss_pred             EEEEEecCC
Q psy6566          83 VLIYANKQD   91 (126)
Q Consensus        83 iilv~nK~D   91 (126)
                      .+++.||+|
T Consensus       127 ~~lvinkid  135 (887)
T KOG0467|consen  127 PILVINKID  135 (887)
T ss_pred             eEEEEehhh
Confidence            788999999

>KOG0461|consensus

Probab=97.55  E-value=0.00072  Score=46.49  Aligned_cols=99  Identities=16%  Similarity=0.133  Sum_probs=55.6

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHH-HHHHhCCCCCCCCeEEEEEecCCCCCCCC--
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEE-LYKMLNHEDLSKAAVLIYANKQDIKNSMS--   97 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~piilv~nK~D~~~~~~--   97 (126)
                      +..++.+.|+||+...-...-.-..-.|..++|+|+..-..-+.+.-+ +-++      .....++|.||+|...+..  
T Consensus        68 e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~------~c~klvvvinkid~lpE~qr~  141 (522)
T KOG0461|consen   68 EQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL------LCKKLVVVINKIDVLPENQRA  141 (522)
T ss_pred             ccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh------hccceEEEEeccccccchhhh
Confidence            446789999999966544333333446889999998753222211111 2222      2346788889998765421  


Q ss_pred             --HHHHHhhcCc---CcccCCceEEEEeeeeeC
Q psy6566          98 --PVEISNLLDL---TSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        98 --~~~v~~~~~~---~~~~~~~~~~~~~Sa~~~  125 (126)
                        .++....+..   +..-..+.+++++||+.|
T Consensus       142 ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G  174 (522)
T KOG0461|consen  142 SKIEKSAKKVRKTLESTGFDGNSPIVEVSAADG  174 (522)
T ss_pred             hHHHHHHHHHHHHHHhcCcCCCCceeEEecCCC
Confidence              1222221111   111233478999999987

>COG3596 Predicted GTPase [General function prediction only]

Probab=97.51  E-value=0.00042  Score=46.00  Aligned_cols=71  Identities=18%  Similarity=0.321  Sum_probs=50.5

Q ss_pred             CCEEEEEEEcCCCcc-------hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566          21 KNIHFIMWDLGGQQS-------LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK   93 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~   93 (126)
                      ++-.+.+||+||.+.       ++.....++...|.++.+.+..++.---+. +.+..+....  -+.+++++.|-+|..
T Consensus        85 ~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~--~~~~~i~~VtQ~D~a  161 (296)
T COG3596          85 DGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDE-DFLRDVIILG--LDKRVLFVVTQADRA  161 (296)
T ss_pred             cccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCH-HHHHHHHHhc--cCceeEEEEehhhhh
Confidence            667899999999765       555666778899999999998876422222 2344443332  358999999999975


Q ss_pred             C
Q psy6566          94 N   94 (126)
Q Consensus        94 ~   94 (126)
                      .
T Consensus       162 ~  162 (296)
T COG3596         162 E  162 (296)
T ss_pred             c
Confidence            4

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=97.49  E-value=0.0016  Score=45.36  Aligned_cols=70  Identities=17%  Similarity=0.148  Sum_probs=47.2

Q ss_pred             CEEEEEEEcCCCcchHH--HHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCC
Q psy6566          22 NIHFIMWDLGGQQSLRA--AWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSM   96 (126)
Q Consensus        22 ~~~~~i~Dt~G~~~~~~--~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~   96 (126)
                      +.-+.+.||.|+|.+-.  ++...-.+.|-.++++.+++--+. -.++++--+ ..   ...|++++.+|+|+..+.
T Consensus       200 DklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~-~tkEHLgi~-~a---~~lPviVvvTK~D~~~dd  271 (527)
T COG5258         200 DKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTK-MTKEHLGIA-LA---MELPVIVVVTKIDMVPDD  271 (527)
T ss_pred             ccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcch-hhhHhhhhh-hh---hcCCEEEEEEecccCcHH
Confidence            35688999999999854  344445678999999987763221 112222222 22   478999999999997653

>KOG3887|consensus

Probab=97.48  E-value=0.00085  Score=43.97  Aligned_cols=71  Identities=18%  Similarity=0.278  Sum_probs=46.9

Q ss_pred             EEEEEEEcCCCcchHH---HHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC-CCCCCeEEEEEecCCCCC
Q psy6566          23 IHFIMWDLGGQQSLRA---AWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE-DLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        23 ~~~~i~Dt~G~~~~~~---~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~   94 (126)
                      +.+++||.|||-.+-.   -....++++.+.+||+|+.+. -.+.+..+..-+.+.. -.+++.+=+...|.|-..
T Consensus        75 inf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLs  149 (347)
T KOG3887|consen   75 INFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLS  149 (347)
T ss_pred             cceEEeecCCccccCCCccCHHHHHhccCeEEEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCc
Confidence            5699999999966532   245568999999999998653 2233322222222221 127899999999999554

>TIGR00101 ureG urease accessory protein UreG

Probab=97.44  E-value=0.00042  Score=44.15  Aligned_cols=88  Identities=15%  Similarity=0.091  Sum_probs=49.9

Q ss_pred             CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE--EEEEecCCCCCC--CC
Q psy6566          22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV--LIYANKQDIKNS--MS   97 (126)
Q Consensus        22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi--ilv~nK~D~~~~--~~   97 (126)
                      +....+.++.|...-....+ .  -++.++.|+|+.+.++...  + ..        ..+..  ++++||+|+...  ..
T Consensus        91 ~~D~iiIEt~G~~l~~~~~~-~--l~~~~i~vvD~~~~~~~~~--~-~~--------~qi~~ad~~~~~k~d~~~~~~~~  156 (199)
T TIGR00101        91 PLEMVFIESGGDNLSATFSP-E--LADLTIFVIDVAAGDKIPR--K-GG--------PGITRSDLLVINKIDLAPMVGAD  156 (199)
T ss_pred             CCCEEEEECCCCCcccccch-h--hhCcEEEEEEcchhhhhhh--h-hH--------hHhhhccEEEEEhhhcccccccc
Confidence            45677889988422222222 1  2688999999876444211  1 00        12333  889999999752  22


Q ss_pred             HHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          98 PVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        98 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .+.+.+.....   ....+++++||++|+
T Consensus       157 ~~~~~~~~~~~---~~~~~i~~~Sa~~g~  182 (199)
T TIGR00101       157 LGVMERDAKKM---RGEKPFIFTNLKTKE  182 (199)
T ss_pred             HHHHHHHHHHh---CCCCCEEEEECCCCC
Confidence            23322222211   224679999999985

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>KOG0464|consensus

Probab=97.42  E-value=3.7e-05  Score=53.77  Aligned_cols=72  Identities=15%  Similarity=0.117  Sum_probs=55.2

Q ss_pred             EEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566          18 VIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        18 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~   94 (126)
                      +.+++..+.++||||+-.|+-..+.+++--|+++.|||.+-.-..+.+ ..|.+..+    -++|-..+.||+|...
T Consensus        97 fdwkg~rinlidtpghvdf~leverclrvldgavav~dasagve~qtl-tvwrqadk----~~ip~~~finkmdk~~  168 (753)
T KOG0464|consen   97 FDWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTL-TVWRQADK----FKIPAHCFINKMDKLA  168 (753)
T ss_pred             cccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCccccee-eeehhccc----cCCchhhhhhhhhhhh
Confidence            444999999999999999999999999999999999998743222222 23433322    4789999999999765

>KOG1532|consensus

Probab=97.37  E-value=0.0017  Score=43.34  Aligned_cols=71  Identities=18%  Similarity=0.280  Sum_probs=45.6

Q ss_pred             CEEEEEEEcCCCcc-hH-----HHH-Hhh-ccCCcEEEEEEECCC---cccHHHHHHHHHHHhCCCCCCCCeEEEEEecC
Q psy6566          22 NIHFIMWDLGGQQS-LR-----AAW-STY-YTNTEFVILVIDSTD---RERISLTKEELYKMLNHEDLSKAAVLIYANKQ   90 (126)
Q Consensus        22 ~~~~~i~Dt~G~~~-~~-----~~~-~~~-~~~~~~~l~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~   90 (126)
                      .....+.|||||-. |.     ... +.. -.....++|++|..+   +.+|-....+-..++..   ...|++++.||+
T Consensus       115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk---tklp~ivvfNK~  191 (366)
T KOG1532|consen  115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK---TKLPFIVVFNKT  191 (366)
T ss_pred             ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh---ccCCeEEEEecc
Confidence            35688999999843 21     111 111 123567899998654   45565555444445544   578999999999


Q ss_pred             CCCCC
Q psy6566          91 DIKNS   95 (126)
Q Consensus        91 D~~~~   95 (126)
                      |+.+.
T Consensus       192 Dv~d~  196 (366)
T KOG1532|consen  192 DVSDS  196 (366)
T ss_pred             ccccc
Confidence            99874

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=97.35  E-value=0.0047  Score=42.01  Aligned_cols=73  Identities=5%  Similarity=0.036  Sum_probs=42.5

Q ss_pred             EECCEEEEEEEcCCCcchHHHH-------Hhhc--cCCcEEEEEEECCC--cccH-HHHHHHHHHHhCCCCCCCCeEEEE
Q psy6566          19 IWKNIHFIMWDLGGQQSLRAAW-------STYY--TNTEFVILVIDSTD--RERI-SLTKEELYKMLNHEDLSKAAVLIY   86 (126)
Q Consensus        19 ~~~~~~~~i~Dt~G~~~~~~~~-------~~~~--~~~~~~l~v~d~~~--~~~~-~~~~~~~~~~~~~~~~~~~piilv   86 (126)
                      ..++..+.++||||........       ..++  .+.|+++||..++.  .... ..+.+.+.......  .-.+.+++
T Consensus        82 ~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~--iw~~~IVV  159 (313)
T TIGR00991        82 TRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKD--IWRKSLVV  159 (313)
T ss_pred             EECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhh--hhccEEEE
Confidence            3488999999999976543221       1112  26899999965442  2211 22223333333221  12468999


Q ss_pred             EecCCCC
Q psy6566          87 ANKQDIK   93 (126)
Q Consensus        87 ~nK~D~~   93 (126)
                      .++.|..
T Consensus       160 fTh~d~~  166 (313)
T TIGR00991       160 LTHAQFS  166 (313)
T ss_pred             EECCccC
Confidence            9999965

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=97.29  E-value=0.0048  Score=40.77  Aligned_cols=81  Identities=6%  Similarity=-0.045  Sum_probs=46.7

Q ss_pred             CceEEEEEECCEEEEEEEcCCCcchHH---H-------HHhhcc--CCcEEEEEEECCCcc-cHH--HHHHHHHHHhCCC
Q psy6566          12 GSNVEEVIWKNIHFIMWDLGGQQSLRA---A-------WSTYYT--NTEFVILVIDSTDRE-RIS--LTKEELYKMLNHE   76 (126)
Q Consensus        12 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~---~-------~~~~~~--~~~~~l~v~d~~~~~-~~~--~~~~~~~~~~~~~   76 (126)
                      .........++..+.+|||||-.....   .       ...+++  ..++++|+..++... ...  .+.+.+...+...
T Consensus        68 ~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~  147 (249)
T cd01853          68 RVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPS  147 (249)
T ss_pred             EEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChh
Confidence            344444555888999999999754421   1       122333  578888887655321 122  2333333333221


Q ss_pred             CCCCCeEEEEEecCCCCC
Q psy6566          77 DLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~   94 (126)
                        --.++++|.||+|...
T Consensus       148 --i~~~~ivV~T~~d~~~  163 (249)
T cd01853         148 --IWRNAIVVLTHAASSP  163 (249)
T ss_pred             --hHhCEEEEEeCCccCC
Confidence              1246999999999754

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=97.22  E-value=0.00082  Score=39.56  Aligned_cols=87  Identities=16%  Similarity=0.126  Sum_probs=52.3

Q ss_pred             EEEcCCCcchHHHHH----hhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHH
Q psy6566          27 MWDLGGQQSLRAAWS----TYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEIS  102 (126)
Q Consensus        27 i~Dt~G~~~~~~~~~----~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~  102 (126)
                      ..||||.---...|.    .....++.+++|-.++++++.-..      -+..  ....|+|-+.+|.||.+....+.+.
T Consensus        41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p------~f~~--~~~k~vIgvVTK~DLaed~dI~~~~  112 (148)
T COG4917          41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFPP------GFLD--IGVKKVIGVVTKADLAEDADISLVK  112 (148)
T ss_pred             ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCCc------cccc--ccccceEEEEecccccchHhHHHHH
Confidence            568998533333332    235678999999988887543211      1111  1356799999999998654444444


Q ss_pred             hhcCcCcccCCceEEEEeeeeeC
Q psy6566         103 NLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      ..+.+.    ..-++|++|+.++
T Consensus       113 ~~L~ea----Ga~~IF~~s~~d~  131 (148)
T COG4917         113 RWLREA----GAEPIFETSAVDN  131 (148)
T ss_pred             HHHHHc----CCcceEEEeccCc
Confidence            333221    1226889988754

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.14  E-value=0.00065  Score=42.34  Aligned_cols=43  Identities=14%  Similarity=0.211  Sum_probs=27.9

Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHH--hCCCCCCCCeEEEEEecCCCCCC
Q psy6566          48 EFVILVIDSTDRERISLTKEELYKM--LNHEDLSKAAVLIYANKQDIKNS   95 (126)
Q Consensus        48 ~~~l~v~d~~~~~~~~~~~~~~~~~--~~~~~~~~~piilv~nK~D~~~~   95 (126)
                      |.+++|+|+..+.+-..  ..+.+.  +..   .+.|++++.||+|+.+.
T Consensus         1 DvVl~VvDar~p~~~~~--~~i~~~~~l~~---~~kp~IlVlNK~DL~~~   45 (172)
T cd04178           1 DVILEVLDARDPLGCRC--PQVEEAVLQAG---GNKKLVLVLNKIDLVPK   45 (172)
T ss_pred             CEEEEEEECCCCCCCCC--HHHHHHHHhcc---CCCCEEEEEehhhcCCH
Confidence            68999999877532211  112223  222   45899999999999653

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=97.08  E-value=0.0015  Score=41.82  Aligned_cols=90  Identities=17%  Similarity=0.173  Sum_probs=47.3

Q ss_pred             CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCC--HH
Q psy6566          22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMS--PV   99 (126)
Q Consensus        22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~   99 (126)
                      +..+.+.+|.|.-....   .+.-..+..+.++|..+.+...  ... .      .....|.++++||+|+.+...  ..
T Consensus       102 ~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~--~~~-~------~~~~~a~iiv~NK~Dl~~~~~~~~~  169 (207)
T TIGR00073       102 DIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKP--LKY-P------GMFKEADLIVINKADLAEAVGFDVE  169 (207)
T ss_pred             CCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchh--hhh-H------hHHhhCCEEEEEHHHccccchhhHH
Confidence            44677888888211110   1112345556778876543211  110 1      112457799999999975321  22


Q ss_pred             HHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566         100 EISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus       100 ~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ++......   .....+++++||++|.
T Consensus       170 ~~~~~l~~---~~~~~~i~~~Sa~~g~  193 (207)
T TIGR00073       170 KMKADAKK---INPEAEIILMSLKTGE  193 (207)
T ss_pred             HHHHHHHH---hCCCCCEEEEECCCCC
Confidence            22222111   1134679999999874

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.05  E-value=0.0028  Score=42.77  Aligned_cols=75  Identities=17%  Similarity=0.164  Sum_probs=45.6

Q ss_pred             ccCCcEEEEEEECCCcc-cHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeee
Q psy6566          44 YTNTEFVILVIDSTDRE-RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCA  122 (126)
Q Consensus        44 ~~~~~~~l~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa  122 (126)
                      +.+.+-.++++.+.+|+ +...+.+++-.+ ..   .++..+++.||+|+..+.....   ...+......+++.+.+||
T Consensus        77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~a-e~---~gi~pvIvlnK~DL~~~~~~~~---~~~~~~y~~~gy~v~~~s~  149 (301)
T COG1162          77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLA-EA---GGIEPVIVLNKIDLLDDEEAAV---KELLREYEDIGYPVLFVSA  149 (301)
T ss_pred             ccccceEEEEEeccCCCCCHHHHHHHHHHH-HH---cCCcEEEEEEccccCcchHHHH---HHHHHHHHhCCeeEEEecC
Confidence            45577788888888876 333333333222 22   5777788899999987532221   1111222356788999999


Q ss_pred             eeC
Q psy6566         123 LTG  125 (126)
Q Consensus       123 ~~~  125 (126)
                      +++
T Consensus       150 ~~~  152 (301)
T COG1162         150 KNG  152 (301)
T ss_pred             cCc
Confidence            876

>KOG0459|consensus

Probab=96.98  E-value=0.0012  Score=46.17  Aligned_cols=120  Identities=17%  Similarity=0.140  Sum_probs=70.5

Q ss_pred             cCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCc---ccHHHHHHHHHHHhCCCCCCCCeE
Q psy6566           7 TSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR---ERISLTKEELYKMLNHEDLSKAAV   83 (126)
Q Consensus         7 ~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~pi   83 (126)
                      -.-|+++....+......+.+.|++|+..|-...-.-..+||.-++|+.+-..   ..|+.-.+-..+.+-.....-.-+
T Consensus       141 kgKtvEvGrA~FEte~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~l  220 (501)
T KOG0459|consen  141 KGKTVEVGRAYFETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHL  220 (501)
T ss_pred             ccceeeeeeEEEEecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceE
Confidence            34688888888999999999999999988866554456678888888764211   112211111222211111133468


Q ss_pred             EEEEecCCCCCC-C---CHHHHHhhcC-----cCcccCCceEEEEeeeeeCC
Q psy6566          84 LIYANKQDIKNS-M---SPVEISNLLD-----LTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        84 ilv~nK~D~~~~-~---~~~~v~~~~~-----~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +++.||+|-+.. .   ..++..+.+.     ..+.-.....++.+|..+|.
T Consensus       221 Vv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~  272 (501)
T KOG0459|consen  221 IVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGA  272 (501)
T ss_pred             EEEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeeccccccc
Confidence            889999997642 1   1122222211     11122235578888888773

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=96.79  E-value=0.021  Score=36.68  Aligned_cols=85  Identities=12%  Similarity=-0.047  Sum_probs=47.4

Q ss_pred             ccCceEEEEEECCEEEEEEEcCCCcch-------HHHHH----hhccCCcEEEEEEECCCcc-cHHHHHHHHHHHhCCCC
Q psy6566          10 TIGSNVEEVIWKNIHFIMWDLGGQQSL-------RAAWS----TYYTNTEFVILVIDSTDRE-RISLTKEELYKMLNHED   77 (126)
Q Consensus        10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~----~~~~~~~~~l~v~d~~~~~-~~~~~~~~~~~~~~~~~   77 (126)
                      |..+......+++..+.++||||-..-       .....    ....+.|++++|+...+.. .-....+++..++....
T Consensus        36 t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~  115 (212)
T PF04548_consen   36 TQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEI  115 (212)
T ss_dssp             -SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGG
T ss_pred             ccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHH
Confidence            555666667789999999999994221       11111    2245789999999987321 22233344555544332


Q ss_pred             CCCCeEEEEEecCCCCCCC
Q psy6566          78 LSKAAVLIYANKQDIKNSM   96 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~~   96 (126)
                      +  .-++++.+..|.....
T Consensus       116 ~--k~~ivvfT~~d~~~~~  132 (212)
T PF04548_consen  116 W--KHTIVVFTHADELEDD  132 (212)
T ss_dssp             G--GGEEEEEEEGGGGTTT
T ss_pred             H--hHhhHHhhhccccccc
Confidence            2  2477788888765543

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>KOG1954|consensus

Probab=96.79  E-value=0.0061  Score=42.45  Aligned_cols=67  Identities=15%  Similarity=0.169  Sum_probs=45.9

Q ss_pred             EEEEEEcCCCcc-----------hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCC
Q psy6566          24 HFIMWDLGGQQS-----------LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDI   92 (126)
Q Consensus        24 ~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~   92 (126)
                      ++.+.||||.-.           |....+.+...+|.++++||....+--.+....+..+..    ..-.+-+|.||.|.
T Consensus       148 ~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG----~EdkiRVVLNKADq  223 (532)
T KOG1954|consen  148 SVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG----HEDKIRVVLNKADQ  223 (532)
T ss_pred             heeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC----CcceeEEEeccccc
Confidence            478999999533           233345567899999999998876655555444444422    23467789999997


Q ss_pred             CC
Q psy6566          93 KN   94 (126)
Q Consensus        93 ~~   94 (126)
                      ..
T Consensus       224 Vd  225 (532)
T KOG1954|consen  224 VD  225 (532)
T ss_pred             cC
Confidence            65

>KOG0460|consensus

Probab=96.69  E-value=0.0071  Score=41.66  Aligned_cols=70  Identities=21%  Similarity=0.261  Sum_probs=47.2

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~   94 (126)
                      ...++.=.|+||+..|-+..-.--..-|+.|+|+.+++-. ..+.++++.-..+.   .-..++++.||.|+..
T Consensus       115 a~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~-MPQTrEHlLLArQV---GV~~ivvfiNKvD~V~  184 (449)
T KOG0460|consen  115 AKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGP-MPQTREHLLLARQV---GVKHIVVFINKVDLVD  184 (449)
T ss_pred             cccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCC-CcchHHHHHHHHHc---CCceEEEEEecccccC
Confidence            5667778899999888766544455679999999988732 22333333222221   2346899999999974

>PRK09602 translation-associated GTPase; Reviewed

Probab=96.64  E-value=0.011  Score=41.78  Aligned_cols=35  Identities=20%  Similarity=0.265  Sum_probs=26.3

Q ss_pred             EEEEEEEcCCC----cchHHHHHh---hccCCcEEEEEEECC
Q psy6566          23 IHFIMWDLGGQ----QSLRAAWST---YYTNTEFVILVIDST   57 (126)
Q Consensus        23 ~~~~i~Dt~G~----~~~~~~~~~---~~~~~~~~l~v~d~~   57 (126)
                      ..+++|||||.    +..+.+-..   .++.+|++++|+|+.
T Consensus        72 ~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         72 IPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             eeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            67999999994    333333333   489999999999986

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=96.54  E-value=0.03  Score=34.80  Aligned_cols=67  Identities=16%  Similarity=0.144  Sum_probs=46.7

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~   94 (126)
                      +...+.+.|||+....  .....+..+|.+++++..+ ..+...+...++.+ +.   .+.|+.++.||.|...
T Consensus        91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l-~~---~~~~~~vV~N~~~~~~  157 (179)
T cd03110          91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPT-PSGLHDLERAVELV-RH---FGIPVGVVINKYDLND  157 (179)
T ss_pred             cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHH-HH---cCCCEEEEEeCCCCCc
Confidence            4678999999976433  2334578899999999866 44666666655544 32   2467889999998754

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>KOG2484|consensus

Probab=96.41  E-value=0.0078  Score=42.08  Aligned_cols=67  Identities=13%  Similarity=0.163  Sum_probs=42.9

Q ss_pred             hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHH-HhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcC
Q psy6566          36 LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYK-MLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLD  106 (126)
Q Consensus        36 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~  106 (126)
                      |.......++.+|+||.|+|+-+|.+-..-.  .+. +++..  .+..+|+|+||+|+......+++..++.
T Consensus       136 Y~ke~rkvve~sDVVleVlDARDPlgtR~~~--vE~~V~~~~--gnKkLILVLNK~DLVPrEv~e~Wl~YLr  203 (435)
T KOG2484|consen  136 YDKEFRKVVEASDVVLEVLDARDPLGTRCPE--VEEAVLQAH--GNKKLILVLNKIDLVPREVVEKWLVYLR  203 (435)
T ss_pred             HHHHHHHHHhhhheEEEeeeccCCCCCCChh--HHHHHHhcc--CCceEEEEeehhccCCHHHHHHHHHHHH
Confidence            3344455678899999999998875433221  222 22232  4589999999999977434444554543

>KOG0705|consensus

Probab=96.40  E-value=0.0074  Score=43.97  Aligned_cols=118  Identities=14%  Similarity=0.243  Sum_probs=70.0

Q ss_pred             CCCcccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566           2 NEVVHTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL   78 (126)
Q Consensus         2 ~~~~~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~   78 (126)
                      |.+.+.+.+.|-.+ +.+.+  +...+.+.|-+|....+     |-..+|++||||.+.+.++|+.+..+...+......
T Consensus        53 gty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~aQ-----ft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r  127 (749)
T KOG0705|consen   53 GTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPDAQ-----FCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNI  127 (749)
T ss_pred             ceeccccCCcCccceeeEEeeccceEeeeecccCCchhh-----hhhhccceEEEEEeccccCHHHHHHHHhhccccccc
Confidence            34444455555333 33333  66678888888843332     566799999999999999999988776666555444


Q ss_pred             CCCeEEEEEecCCCCCCCCHHHHHhhcCc-CcccCCceEEEEeeeeeC
Q psy6566          79 SKAAVLIYANKQDIKNSMSPVEISNLLDL-TSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        79 ~~~piilv~nK~D~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~Sa~~~  125 (126)
                      ..+|+++++.+. .......+.+....+. .........+|+++|.+|
T Consensus       128 ~~i~l~lvgtqd-~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyG  174 (749)
T KOG0705|consen  128 SDLPLILVGTQD-HISAKRPRVITDDRARQLSAQMKRCSYYETCATYG  174 (749)
T ss_pred             ccchHHhhcCcc-hhhcccccccchHHHHHHHHhcCccceeecchhhh
Confidence            678888888773 3222111111111111 111233456788877665

>COG1161 Predicted GTPases [General function prediction only]

Probab=96.37  E-value=0.0083  Score=41.13  Aligned_cols=83  Identities=14%  Similarity=0.172  Sum_probs=50.6

Q ss_pred             CCC-cchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCc
Q psy6566          31 GGQ-QSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTS  109 (126)
Q Consensus        31 ~G~-~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~  109 (126)
                      +|+ ..+.......+..+|.++.|+|+-++.+...-  .+..+..     +.|.++++||+|+........+.+.+... 
T Consensus        18 ~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~--~l~~~v~-----~k~~i~vlNK~DL~~~~~~~~W~~~~~~~-   89 (322)
T COG1161          18 PGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNP--ELERIVK-----EKPKLLVLNKADLAPKEVTKKWKKYFKKE-   89 (322)
T ss_pred             CCchHHHHHHHHHhcccCCEEEEEEeccccccccCc--cHHHHHc-----cCCcEEEEehhhcCCHHHHHHHHHHHHhc-
Confidence            554 34455666778999999999999887644332  2444443     34559999999998743334444443322 


Q ss_pred             ccCCceEEEEeeeee
Q psy6566         110 IKKQQWHIQSCCALT  124 (126)
Q Consensus       110 ~~~~~~~~~~~Sa~~  124 (126)
                         .+...+.+|++.
T Consensus        90 ---~~~~~~~v~~~~  101 (322)
T COG1161          90 ---EGIKPIFVSAKS  101 (322)
T ss_pred             ---CCCccEEEEeec
Confidence               133445555554

>KOG0448|consensus

Probab=96.29  E-value=0.035  Score=41.47  Aligned_cols=67  Identities=18%  Similarity=0.433  Sum_probs=43.8

Q ss_pred             EEEEEEcCCC---cchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCC
Q psy6566          24 HFIMWDLGGQ---QSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNS   95 (126)
Q Consensus        24 ~~~i~Dt~G~---~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~   95 (126)
                      .+.+.|.||.   .........+...+|.+|||..+-+  .+....+.+......   ....+.++.||.|....
T Consensus       207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEn--tlt~sek~Ff~~vs~---~KpniFIlnnkwDasas  276 (749)
T KOG0448|consen  207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAEN--TLTLSEKQFFHKVSE---EKPNIFILNNKWDASAS  276 (749)
T ss_pred             cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCcc--HhHHHHHHHHHHhhc---cCCcEEEEechhhhhcc
Confidence            5778899995   3445566778889999999987654  333333223222222   24567888889998654

>KOG1707|consensus

Probab=96.29  E-value=0.028  Score=41.20  Aligned_cols=76  Identities=21%  Similarity=0.240  Sum_probs=51.4

Q ss_pred             EEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCC
Q psy6566          15 VEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDI   92 (126)
Q Consensus        15 ~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~   92 (126)
                      ...+.+  +.-.+.+-|.+-. ....+-.. =..||.+.++||.+++.+|+-...........   ...|+++++.|+|+
T Consensus       464 vn~v~~~g~~k~LiL~ei~~~-~~~~l~~k-e~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dl  538 (625)
T KOG1707|consen  464 VNSVEVKGQQKYLILREIGED-DQDFLTSK-EAACDVACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADL  538 (625)
T ss_pred             eeeeeeccccceEEEeecCcc-ccccccCc-cceeeeEEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeecccc
Confidence            344444  3345666676644 11111111 17799999999999999999887765554333   67999999999999


Q ss_pred             CCC
Q psy6566          93 KNS   95 (126)
Q Consensus        93 ~~~   95 (126)
                      ...
T Consensus       539 De~  541 (625)
T KOG1707|consen  539 DEV  541 (625)
T ss_pred             chh
Confidence            763

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=96.26  E-value=0.017  Score=37.79  Aligned_cols=65  Identities=14%  Similarity=0.285  Sum_probs=44.1

Q ss_pred             CCEEEEEEEc-CCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCC-CeEEEEEecCCCC
Q psy6566          21 KNIHFIMWDL-GGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK-AAVLIYANKQDIK   93 (126)
Q Consensus        21 ~~~~~~i~Dt-~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~piilv~nK~D~~   93 (126)
                      +.-.+.+.|| ||.|-|.   +...+++|.++.|+|.+- .++.-+.+ +.++.+.   -+ .++.+|.||.|-.
T Consensus       132 ~~~e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~taer-i~~L~~e---lg~k~i~~V~NKv~e~  198 (255)
T COG3640         132 NRYEVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTAER-IKELAEE---LGIKRIFVVLNKVDEE  198 (255)
T ss_pred             ccCcEEEEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHHHH-HHHHHHH---hCCceEEEEEeeccch
Confidence            3456778888 5766654   445789999999999764 34544433 4444333   24 6899999999854

>KOG0463|consensus

Probab=95.96  E-value=0.023  Score=39.83  Aligned_cols=68  Identities=22%  Similarity=0.228  Sum_probs=41.7

Q ss_pred             EEEEEEEcCCCcchHHHHHhh--ccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCC
Q psy6566          23 IHFIMWDLGGQQSLRAAWSTY--YTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNS   95 (126)
Q Consensus        23 ~~~~i~Dt~G~~~~~~~~~~~--~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~   95 (126)
                      ..+.|+|.+|+|+|-+.--.-  -+-.|..++|+-++-- -..-.++.+--.+.    -.+|+.+|.+|+|++..
T Consensus       219 KviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEHLgLALa----L~VPVfvVVTKIDMCPA  288 (641)
T KOG0463|consen  219 KVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEHLGLALA----LHVPVFVVVTKIDMCPA  288 (641)
T ss_pred             eeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHhhhhhhh----hcCcEEEEEEeeccCcH
Confidence            357899999999986543222  2346777887765431 11112222322222    36899999999998874

>KOG0466|consensus

Probab=95.89  E-value=0.0039  Score=42.32  Aligned_cols=96  Identities=19%  Similarity=0.145  Sum_probs=50.3

Q ss_pred             EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHH---
Q psy6566          23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPV---   99 (126)
Q Consensus        23 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~---   99 (126)
                      .++.|.|+||++..-.....-..--|+.++++..+++-.-.+..+++..+--.   .-.-++++.||+|+..+....   
T Consensus       125 RHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM---~LkhiiilQNKiDli~e~~A~eq~  201 (466)
T KOG0466|consen  125 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM---KLKHIIILQNKIDLIKESQALEQH  201 (466)
T ss_pred             EEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh---hhceEEEEechhhhhhHHHHHHHH
Confidence            35789999999765432221122236777777766532222222222222111   224689999999997653221   


Q ss_pred             -HHHhhcCcCcccCCceEEEEeeee
Q psy6566         100 -EISNLLDLTSIKKQQWHIQSCCAL  123 (126)
Q Consensus       100 -~v~~~~~~~~~~~~~~~~~~~Sa~  123 (126)
                       ++.....-.  ...+.+++.+||.
T Consensus       202 e~I~kFi~~t--~ae~aPiiPisAQ  224 (466)
T KOG0466|consen  202 EQIQKFIQGT--VAEGAPIIPISAQ  224 (466)
T ss_pred             HHHHHHHhcc--ccCCCceeeehhh
Confidence             222222111  2235578888874

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=95.59  E-value=0.14  Score=36.68  Aligned_cols=82  Identities=17%  Similarity=0.128  Sum_probs=47.6

Q ss_pred             cCCccCceE---EEEEE-----CCEEEEEEEcCCCcc--------hHH-----------------H----HHhhcc-CCc
Q psy6566           7 TSPTIGSNV---EEVIW-----KNIHFIMWDLGGQQS--------LRA-----------------A----WSTYYT-NTE   48 (126)
Q Consensus         7 ~~pTi~~~~---~~~~~-----~~~~~~i~Dt~G~~~--------~~~-----------------~----~~~~~~-~~~   48 (126)
                      +..|.+.-+   +.+.+     -..++.+.||+|-..        ...                 .    -+..+. .++
T Consensus        67 tItTTePkfvP~kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhst  146 (492)
T TIGR02836        67 TIMTTEPKFVPNEAVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHST  146 (492)
T ss_pred             CcccCCCccccCcceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCc
Confidence            346666444   66666     236899999998211        111                 0    122344 788


Q ss_pred             EEEEEE-ECC----CcccHHHHH-HHHHHHhCCCCCCCCeEEEEEecCCC
Q psy6566          49 FVILVI-DST----DRERISLTK-EELYKMLNHEDLSKAAVLIYANKQDI   92 (126)
Q Consensus        49 ~~l~v~-d~~----~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~   92 (126)
                      ..++|. |.+    .++...+.. .++.++ +.   .++|++++.||+|-
T Consensus       147 IgivVtTDgsi~dI~Re~y~~aEe~~i~eL-k~---~~kPfiivlN~~dp  192 (492)
T TIGR02836       147 IGVVVTTDGTITDIPREDYVEAEERVIEEL-KE---LNKPFIILLNSTHP  192 (492)
T ss_pred             EEEEEEcCCCccccccccchHHHHHHHHHH-Hh---cCCCEEEEEECcCC
Confidence            888887 653    112233332 333433 33   47999999999994

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=95.42  E-value=0.021  Score=39.92  Aligned_cols=63  Identities=21%  Similarity=0.337  Sum_probs=33.3

Q ss_pred             EEEEEEEcCCCcchHHHHHhh-----ccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCC
Q psy6566          23 IHFIMWDLGGQQSLRAAWSTY-----YTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDI   92 (126)
Q Consensus        23 ~~~~i~Dt~G~~~~~~~~~~~-----~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~   92 (126)
                      -.+.+||.||...-.-....|     +..-|.++++.+    +.|....-++...++.   .+.|+.+|.+|+|.
T Consensus        86 pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s----~rf~~ndv~La~~i~~---~gK~fyfVRTKvD~  153 (376)
T PF05049_consen   86 PNVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISS----ERFTENDVQLAKEIQR---MGKKFYFVRTKVDS  153 (376)
T ss_dssp             TTEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEES----SS--HHHHHHHHHHHH---TT-EEEEEE--HHH
T ss_pred             CCCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeC----CCCchhhHHHHHHHHH---cCCcEEEEEecccc
Confidence            359999999953322223323     556788887664    2344444445444444   57899999999995

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>KOG3905|consensus

Probab=95.42  E-value=0.3  Score=33.91  Aligned_cols=62  Identities=11%  Similarity=0.066  Sum_probs=40.0

Q ss_pred             ccCCccCceEEEEEE------CCEEEEEEEcCCCcchHHHHHhhccC---C-cEEEEEEECCCcc-cHHHHHH
Q psy6566           6 HTSPTIGSNVEEVIW------KNIHFIMWDLGGQQSLRAAWSTYYTN---T-EFVILVIDSTDRE-RISLTKE   67 (126)
Q Consensus         6 ~~~pTi~~~~~~~~~------~~~~~~i~Dt~G~~~~~~~~~~~~~~---~-~~~l~v~d~~~~~-~~~~~~~   67 (126)
                      .+.+--|.....+.+      +..++.+|=..|......+..+.+..   + ..+|++.|++++. -++.+.+
T Consensus        77 ~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetlviltasms~Pw~~lesLqk  149 (473)
T KOG3905|consen   77 TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLVILTASMSNPWTLLESLQK  149 (473)
T ss_pred             ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceEEEEEEecCCcHHHHHHHHH
Confidence            455555666666666      44678899988987766666555443   2 4577888999873 3333333

>KOG0410|consensus

Probab=95.14  E-value=0.023  Score=39.00  Aligned_cols=83  Identities=14%  Similarity=0.258  Sum_probs=50.5

Q ss_pred             ccCceEEEEEE-CCEEEEEEEcCCC---------cchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCC
Q psy6566          10 TIGSNVEEVIW-KNIHFIMWDLGGQ---------QSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLS   79 (126)
Q Consensus        10 Ti~~~~~~~~~-~~~~~~i~Dt~G~---------~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~   79 (126)
                      |.+...+..++ .+..+-+-||-|=         .-|+..... +..+|.++-|.|++.|+.-. .+.-....++..+.+
T Consensus       212 TLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLee-VaeadlllHvvDiShP~ae~-q~e~Vl~vL~~igv~  289 (410)
T KOG0410|consen  212 TLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEE-VAEADLLLHVVDISHPNAEE-QRETVLHVLNQIGVP  289 (410)
T ss_pred             eccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHH-HhhcceEEEEeecCCccHHH-HHHHHHHHHHhcCCC
Confidence            33344444455 5677888899882         234444443 66799999999999886433 333344555554445


Q ss_pred             CCe----EEEEEecCCCCC
Q psy6566          80 KAA----VLIYANKQDIKN   94 (126)
Q Consensus        80 ~~p----iilv~nK~D~~~   94 (126)
                      ..|    ++=|-||.|...
T Consensus       290 ~~pkl~~mieVdnkiD~e~  308 (410)
T KOG0410|consen  290 SEPKLQNMIEVDNKIDYEE  308 (410)
T ss_pred             cHHHHhHHHhhcccccccc
Confidence            455    444677777544

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=95.12  E-value=0.16  Score=30.32  Aligned_cols=66  Identities=15%  Similarity=0.195  Sum_probs=42.7

Q ss_pred             EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566          23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK   93 (126)
Q Consensus        23 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~   93 (126)
                      ..+.++|+++...  ......+..+|.++++.+.+ ..++......++.+.+..  ...++.++.|+.+..
T Consensus        45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~-~~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~~  110 (139)
T cd02038          45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE-PTSITDAYALIKKLAKQL--RVLNFRVVVNRAESP  110 (139)
T ss_pred             CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC-hhHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCCH
Confidence            5688999987533  23345688899999999865 445555444444432221  345778999998643

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>KOG1143|consensus

Probab=95.09  E-value=0.095  Score=36.90  Aligned_cols=68  Identities=18%  Similarity=0.203  Sum_probs=42.6

Q ss_pred             EEEEEEEcCCCcchHHHHHhhcc--CCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCC
Q psy6566          23 IHFIMWDLGGQQSLRAAWSTYYT--NTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNS   95 (126)
Q Consensus        23 ~~~~i~Dt~G~~~~~~~~~~~~~--~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~   95 (126)
                      ..+.+.|.+|+.+|...--+-+.  ..|..++|+.+..--.. ..++++--+ ..   -++|++++.+|+|+...
T Consensus       249 KlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~-tTrEHLgl~-~A---L~iPfFvlvtK~Dl~~~  318 (591)
T KOG1143|consen  249 KLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITW-TTREHLGLI-AA---LNIPFFVLVTKMDLVDR  318 (591)
T ss_pred             ceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcc-ccHHHHHHH-HH---hCCCeEEEEEeeccccc
Confidence            45889999999988764333332  25777777776542111 112222222 22   47999999999999864

>KOG0447|consensus

Probab=95.05  E-value=1  Score=33.65  Aligned_cols=94  Identities=17%  Similarity=0.291  Sum_probs=57.8

Q ss_pred             ccCceEEEEEECC---EEEEEEEcCCCc-------------chHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHh
Q psy6566          10 TIGSNVEEVIWKN---IHFIMWDLGGQQ-------------SLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKML   73 (126)
Q Consensus        10 Ti~~~~~~~~~~~---~~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~   73 (126)
                      |+--..-.+.+++   -...+.|.||.-             ..-.+..+|+.+.+++|+++.--..+   .-+.-.-.+.
T Consensus       396 TVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVD---AERSnVTDLV  472 (980)
T KOG0447|consen  396 TVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVD---AERSIVTDLV  472 (980)
T ss_pred             ccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcc---hhhhhHHHHH
Confidence            3333334455533   467789999842             23346788999999999998522222   2222233444


Q ss_pred             CCCCCCCCeEEEEEecCCCCCC--CCHHHHHhhcC
Q psy6566          74 NHEDLSKAAVLIYANKQDIKNS--MSPVEISNLLD  106 (126)
Q Consensus        74 ~~~~~~~~piilv~nK~D~~~~--~~~~~v~~~~~  106 (126)
                      ......+...|+|.+|.|+.+.  .+++.+.+.+.
T Consensus       473 sq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIle  507 (980)
T KOG0447|consen  473 SQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIE  507 (980)
T ss_pred             HhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHh
Confidence            4545568899999999999763  34555555443

>cd01900 YchF YchF subfamily

Probab=95.00  E-value=0.083  Score=35.51  Aligned_cols=50  Identities=18%  Similarity=0.119  Sum_probs=33.0

Q ss_pred             CCccCceEEEEEECCE-----------------EEEEEEcCCCcc-------hHHHHHhhccCCcEEEEEEECC
Q psy6566           8 SPTIGSNVEEVIWKNI-----------------HFIMWDLGGQQS-------LRAAWSTYYTNTEFVILVIDST   57 (126)
Q Consensus         8 ~pTi~~~~~~~~~~~~-----------------~~~i~Dt~G~~~-------~~~~~~~~~~~~~~~l~v~d~~   57 (126)
                      -+|++.+...+.+.+.                 .+.+.|+||...       ........++.+|++++|+|..
T Consensus        30 ftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          30 FCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             ccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence            3566666666666332                 599999999432       2223334478899999999863

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>KOG0469|consensus

Probab=94.81  E-value=0.076  Score=38.76  Aligned_cols=68  Identities=15%  Similarity=0.178  Sum_probs=48.1

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK   93 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~   93 (126)
                      .+..+.++|.||+-.|.+..-..++-.|+.+.|+|..+---. +....+.+.+..    .+.-+++.||.|..
T Consensus        96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCV-QTETVLrQA~~E----RIkPvlv~NK~DRA  163 (842)
T KOG0469|consen   96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCV-QTETVLRQAIAE----RIKPVLVMNKMDRA  163 (842)
T ss_pred             cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEe-chHHHHHHHHHh----hccceEEeehhhHH
Confidence            456788999999999999999999999999999997653111 011123333332    34447789999953

>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]

Probab=94.54  E-value=0.55  Score=32.92  Aligned_cols=82  Identities=12%  Similarity=0.227  Sum_probs=57.9

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHH
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVE  100 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~  100 (126)
                      ....+.++|.|  .........++.++|.+++|++.+ ..+.+..++.+..+-+.. .++.+..++.||.+.....+..+
T Consensus       216 ~~~~~vV~Dlp--~~~~~~t~~vL~~Sd~iviv~e~s-l~slR~ak~lld~l~~~r-~~~~~p~lv~n~~~~~~~~~~~d  291 (366)
T COG4963         216 GSFDFVVVDLP--NIWTDWTRQVLSGSDEIVIVAEPS-LASLRNAKELLDELKRLR-PNDPKPILVLNRVGVPKRPEPSD  291 (366)
T ss_pred             ccCCeEEEcCC--CccchHHHHHHhcCCeEEEEeccc-HHHHHHHHHHHHHHHHhC-CCCCCceEEeeecCCCCCCCHHH
Confidence            34568899999  344555677899999999999864 457777777666665543 36778899999998766444455


Q ss_pred             HHhhcC
Q psy6566         101 ISNLLD  106 (126)
Q Consensus       101 v~~~~~  106 (126)
                      +...++
T Consensus       292 l~~~~~  297 (366)
T COG4963         292 LEEILG  297 (366)
T ss_pred             HHHHhC
Confidence            554444

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=94.50  E-value=0.35  Score=27.50  Aligned_cols=63  Identities=19%  Similarity=0.145  Sum_probs=40.4

Q ss_pred             EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCC-CCeEEEEEec
Q psy6566          23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLS-KAAVLIYANK   89 (126)
Q Consensus        23 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~piilv~nK   89 (126)
                      ..+.+.|+++.....  ....+..+|.++++.+.+ ..+...+...+..+.+.. .+ ...+.++.|+
T Consensus        43 ~D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~-~~s~~~~~~~~~~l~~~~-~~~~~~~~lVvNr  106 (106)
T cd03111          43 DDYVVVDLGRSLDEV--SLAALDQADRVFLVTQQD-LPSIRNAKRLLELLRVLD-YSLPAKIELVLNR  106 (106)
T ss_pred             CCEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCC-hHHHHHHHHHHHHHHHcC-CCCcCceEEEecC
Confidence            378999999875443  334678899999998754 456666665554443332 22 3466677775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>cd03112 CobW_like The function of this protein family is unkown

Probab=94.38  E-value=0.18  Score=30.86  Aligned_cols=65  Identities=18%  Similarity=0.098  Sum_probs=35.2

Q ss_pred             CEEEEEEEcCCCcchHHHHHh--------hccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCC
Q psy6566          22 NIHFIMWDLGGQQSLRAAWST--------YYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDI   92 (126)
Q Consensus        22 ~~~~~i~Dt~G~~~~~~~~~~--------~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~   92 (126)
                      .....+.||+|-..-......        ..-..+.+++++|..+.....+....+..-++     ... +++.||+|+
T Consensus        86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~-----~ad-~ivlnk~dl  158 (158)
T cd03112          86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIA-----FAD-RILLNKTDL  158 (158)
T ss_pred             CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHH-----HCC-EEEEecccC
Confidence            456778999997544433322        12357889999997542211101111111111     222 668999996

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PTZ00258 GTP-binding protein; Provisional

Probab=94.29  E-value=0.4  Score=33.96  Aligned_cols=35  Identities=14%  Similarity=0.164  Sum_probs=25.1

Q ss_pred             EEEEEEEcCCCcc-------hHHHHHhhccCCcEEEEEEECC
Q psy6566          23 IHFIMWDLGGQQS-------LRAAWSTYYTNTEFVILVIDST   57 (126)
Q Consensus        23 ~~~~i~Dt~G~~~-------~~~~~~~~~~~~~~~l~v~d~~   57 (126)
                      .++.+.||||...       ........++.+|++++|+|..
T Consensus        85 aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         85 AQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            4589999999532       2223334578899999999974

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=94.25  E-value=0.73  Score=35.09  Aligned_cols=75  Identities=9%  Similarity=0.037  Sum_probs=42.9

Q ss_pred             EEECCEEEEEEEcCCCcchH-------HH---HHhhcc--CCcEEEEEEECCCcccH-H--HHHHHHHHHhCCCCCCCCe
Q psy6566          18 VIWKNIHFIMWDLGGQQSLR-------AA---WSTYYT--NTEFVILVIDSTDRERI-S--LTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus        18 ~~~~~~~~~i~Dt~G~~~~~-------~~---~~~~~~--~~~~~l~v~d~~~~~~~-~--~~~~~~~~~~~~~~~~~~p   82 (126)
                      ..+.+..+.++||||.....       .+   ...+++  .+|++|+|..+...... +  .+.+.+..++-...  -.-
T Consensus       161 ~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~I--wk~  238 (763)
T TIGR00993       161 GLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSI--WFN  238 (763)
T ss_pred             EEECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHh--HcC
Confidence            34478899999999975421       11   222333  58999999876533221 1  12223333333221  135


Q ss_pred             EEEEEecCCCCC
Q psy6566          83 VLIYANKQDIKN   94 (126)
Q Consensus        83 iilv~nK~D~~~   94 (126)
                      +||+.++.|...
T Consensus       239 tIVVFThgD~lp  250 (763)
T TIGR00993       239 AIVTLTHAASAP  250 (763)
T ss_pred             EEEEEeCCccCC
Confidence            788899998764

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>KOG1486|consensus

Probab=94.08  E-value=0.2  Score=33.48  Aligned_cols=50  Identities=14%  Similarity=0.197  Sum_probs=35.0

Q ss_pred             EEEEECCEEEEEEEcCCCcchH-------HHHHhhccCCcEEEEEEECCCcccHHHH
Q psy6566          16 EEVIWKNIHFIMWDLGGQQSLR-------AAWSTYYTNTEFVILVIDSTDRERISLT   65 (126)
Q Consensus        16 ~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~~~~l~v~d~~~~~~~~~~   65 (126)
                      ..+.+++..+++.|.||.-.-.       .+.-...+.||.+++|+|++..+.-+.+
T Consensus       102 Gvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~e~qr~~  158 (364)
T KOG1486|consen  102 GVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKSEDQREI  158 (364)
T ss_pred             ceEEecCceEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcchhHHHH
Confidence            3455699999999999853221       1233446789999999999876644433

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=93.89  E-value=0.37  Score=32.53  Aligned_cols=44  Identities=16%  Similarity=0.166  Sum_probs=26.1

Q ss_pred             CCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566          46 NTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        46 ~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~   94 (126)
                      ..|+|+|+++.+...--......++++ +    ...++|-|..|+|...
T Consensus       113 RVH~cLYfI~pt~~~L~~~Di~~mk~L-s----~~vNvIPvIaKaD~lt  156 (281)
T PF00735_consen  113 RVHACLYFIPPTGHGLKPLDIEFMKRL-S----KRVNVIPVIAKADTLT  156 (281)
T ss_dssp             -EEEEEEEE-TTSSSS-HHHHHHHHHH-T----TTSEEEEEESTGGGS-
T ss_pred             CcceEEEEEcCCCccchHHHHHHHHHh-c----ccccEEeEEecccccC
Confidence            469999999976532111122334444 2    3578899999999765

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=93.85  E-value=0.71  Score=28.37  Aligned_cols=65  Identities=11%  Similarity=0.005  Sum_probs=42.7

Q ss_pred             EEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566          24 HFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        24 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~   94 (126)
                      .+.++|+++.....  ....+..+|.++++++... .++..+...+..+...   ......++.|+.+...
T Consensus        64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~  128 (179)
T cd02036          64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL---GIKVVGVIVNRVRPDM  128 (179)
T ss_pred             CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc---CCceEEEEEeCCcccc
Confidence            69999999865443  3344678999999987653 4555555544443321   2345778999998654

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=93.69  E-value=0.021  Score=37.87  Aligned_cols=94  Identities=18%  Similarity=0.179  Sum_probs=48.1

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCC-HH
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMS-PV   99 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~   99 (126)
                      -+..+.+..|.|.-+-...   ...-+|.+++|.-..--+..+..+.-+.         .+.=++|.||+|+..... ..
T Consensus       120 aG~D~IiiETVGvGQsE~~---I~~~aD~~v~v~~Pg~GD~iQ~~KaGim---------EiaDi~vVNKaD~~gA~~~~~  187 (266)
T PF03308_consen  120 AGFDVIIIETVGVGQSEVD---IADMADTVVLVLVPGLGDEIQAIKAGIM---------EIADIFVVNKADRPGADRTVR  187 (266)
T ss_dssp             TT-SEEEEEEESSSTHHHH---HHTTSSEEEEEEESSTCCCCCTB-TTHH---------HH-SEEEEE--SHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCccHHH---HHHhcCeEEEEecCCCccHHHHHhhhhh---------hhccEEEEeCCChHHHHHHHH
Confidence            4677888888764332211   3556999999987654443332221111         234488999999655311 12


Q ss_pred             HHHhhcCcCcc--cCCceEEEEeeeeeCC
Q psy6566         100 EISNLLDLTSI--KKQQWHIQSCCALTGE  126 (126)
Q Consensus       100 ~v~~~~~~~~~--~~~~~~~~~~Sa~~~~  126 (126)
                      ++...+.....  ....-+++.+||.+|+
T Consensus       188 ~l~~~l~l~~~~~~~W~ppV~~tsA~~~~  216 (266)
T PF03308_consen  188 DLRSMLHLLREREDGWRPPVLKTSALEGE  216 (266)
T ss_dssp             HHHHHHHHCSTSCTSB--EEEEEBTTTTB
T ss_pred             HHHHHHhhccccccCCCCCEEEEEeCCCC
Confidence            23332222211  2234589999998763

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=93.49  E-value=0.45  Score=32.51  Aligned_cols=94  Identities=19%  Similarity=0.196  Sum_probs=52.0

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCC-CCHH
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNS-MSPV   99 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~-~~~~   99 (126)
                      .+..+.|..|.|.-+-...   ...-+|.++++.-.---+..+.++   .-++      .+-=+++.||.|..+. ....
T Consensus       142 aG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK---~Gim------EiaDi~vINKaD~~~A~~a~r  209 (323)
T COG1703         142 AGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIK---AGIM------EIADIIVINKADRKGAEKAAR  209 (323)
T ss_pred             cCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHH---hhhh------hhhheeeEeccChhhHHHHHH
Confidence            6778889999875333221   244588888876432223333222   2232      2344889999997653 1122


Q ss_pred             HHHhhcCcCc--c--cCCceEEEEeeeeeCC
Q psy6566         100 EISNLLDLTS--I--KKQQWHIQSCCALTGE  126 (126)
Q Consensus       100 ~v~~~~~~~~--~--~~~~~~~~~~Sa~~~~  126 (126)
                      ++...+....  .  +...-+++.+||.+|+
T Consensus       210 ~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~  240 (323)
T COG1703         210 ELRSALDLLREVWRENGWRPPVVTTSALEGE  240 (323)
T ss_pred             HHHHHHHhhcccccccCCCCceeEeeeccCC
Confidence            3333332221  2  2234479999999874

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=93.10  E-value=0.3  Score=39.37  Aligned_cols=70  Identities=16%  Similarity=0.253  Sum_probs=43.2

Q ss_pred             EEEEEEcCCCc--------chHHHHHhhc---------cCCcEEEEEEECCCcc-----c----HHHHHHHHHHHhCCCC
Q psy6566          24 HFIMWDLGGQQ--------SLRAAWSTYY---------TNTEFVILVIDSTDRE-----R----ISLTKEELYKMLNHED   77 (126)
Q Consensus        24 ~~~i~Dt~G~~--------~~~~~~~~~~---------~~~~~~l~v~d~~~~~-----~----~~~~~~~~~~~~~~~~   77 (126)
                      ...++||+|.-        .....|..++         +-.+|+|+++|+.+.-     .    ...++..+.++.+.-.
T Consensus       162 ~avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg  241 (1169)
T TIGR03348       162 EAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLG  241 (1169)
T ss_pred             CEEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            35589999932        2334455442         3589999999976431     1    1223333444433322


Q ss_pred             CCCCeEEEEEecCCCCC
Q psy6566          78 LSKAAVLIYANKQDIKN   94 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~   94 (126)
                       -..|+.++.+|+|+..
T Consensus       242 -~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       242 -ARFPVYLVLTKADLLA  257 (1169)
T ss_pred             -CCCCEEEEEecchhhc
Confidence             4799999999999863

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=92.96  E-value=0.81  Score=33.31  Aligned_cols=57  Identities=14%  Similarity=0.193  Sum_probs=41.7

Q ss_pred             CcccCCccCceEEEEEE------CCEEEEEEEcCCCcchHHHHHhhccC----CcEEEEEEECCCcc
Q psy6566           4 VVHTSPTIGSNVEEVIW------KNIHFIMWDLGGQQSLRAAWSTYYTN----TEFVILVIDSTDRE   60 (126)
Q Consensus         4 ~~~~~pTi~~~~~~~~~------~~~~~~i~Dt~G~~~~~~~~~~~~~~----~~~~l~v~d~~~~~   60 (126)
                      ...+.+|.|..+..+.+      ....+.+|-.+|...+..+....+..    --.+|+|+|.+.|.
T Consensus        48 ~e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~vvIvlDlS~PW  114 (472)
T PF05783_consen   48 IEDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNTLVVIVLDLSKPW  114 (472)
T ss_pred             cCCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccceEEEEEecCCChH
Confidence            45677888877766666      23578999999988888877665553    24588889999864

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=92.87  E-value=0.49  Score=33.19  Aligned_cols=34  Identities=12%  Similarity=0.204  Sum_probs=24.4

Q ss_pred             EEEEEEcCCCcc-------hHHHHHhhccCCcEEEEEEECC
Q psy6566          24 HFIMWDLGGQQS-------LRAAWSTYYTNTEFVILVIDST   57 (126)
Q Consensus        24 ~~~i~Dt~G~~~-------~~~~~~~~~~~~~~~l~v~d~~   57 (126)
                      .+.+.|+||...       ........++.+|++++|+|..
T Consensus        67 ~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         67 TIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             eEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence            589999999532       1122333478999999999974

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=92.79  E-value=0.076  Score=35.95  Aligned_cols=44  Identities=23%  Similarity=0.151  Sum_probs=26.7

Q ss_pred             CCeEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          80 KAAVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        80 ~~piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ..+-++++||+|+....  ..+.+......   .....+++.+||++|+
T Consensus       230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~---lnp~a~I~~vSA~tGe  275 (290)
T PRK10463        230 AAASLMLLNKVDLLPYLNFDVEKCIACARE---VNPEIEIILISATSGE  275 (290)
T ss_pred             hcCcEEEEEhHHcCcccHHHHHHHHHHHHh---hCCCCcEEEEECCCCC
Confidence            45678999999997532  12222222211   1234679999999874

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=92.56  E-value=1.3  Score=31.13  Aligned_cols=82  Identities=16%  Similarity=0.265  Sum_probs=48.7

Q ss_pred             cCCccCceEEEEEE--CC--EEEEEEEcCCCcc-------hH-------HHHHhhc--------------cCCcEEEEEE
Q psy6566           7 TSPTIGSNVEEVIW--KN--IHFIMWDLGGQQS-------LR-------AAWSTYY--------------TNTEFVILVI   54 (126)
Q Consensus         7 ~~pTi~~~~~~~~~--~~--~~~~i~Dt~G~~~-------~~-------~~~~~~~--------------~~~~~~l~v~   54 (126)
                      ..||+.+......+  ++  ..+.+.||||--.       +.       .+.+.|+              ...|+|+|.+
T Consensus        62 ~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI  141 (373)
T COG5019          62 TSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFI  141 (373)
T ss_pred             CCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEe
Confidence            56888877777777  44  5688999999211       11       1122221              2479999999


Q ss_pred             ECCCcccHHHHH-HHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566          55 DSTDRERISLTK-EELYKMLNHEDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        55 d~~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~   94 (126)
                      ..+.. .+..+. ..++.+-     ..+.+|-|+-|+|...
T Consensus       142 ~Ptgh-~l~~~DIe~Mk~ls-----~~vNlIPVI~KaD~lT  176 (373)
T COG5019         142 RPTGH-GLKPLDIEAMKRLS-----KRVNLIPVIAKADTLT  176 (373)
T ss_pred             cCCCC-CCCHHHHHHHHHHh-----cccCeeeeeeccccCC
Confidence            87643 232232 2223332     3467777888999765

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=92.49  E-value=0.68  Score=33.27  Aligned_cols=67  Identities=13%  Similarity=0.169  Sum_probs=39.1

Q ss_pred             CCEEEEEEEcCCCcchHHHH----Hhh--ccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566          21 KNIHFIMWDLGGQQSLRAAW----STY--YTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~----~~~--~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~   94 (126)
                      ++..+.|.||+|+.......    ..+  ....+.+++|+|++......+..+.+.   +.    --+--++.||.|-..
T Consensus       181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~---~~----~~~~g~IlTKlD~~a  253 (429)
T TIGR01425       181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFK---DS----VDVGSVIITKLDGHA  253 (429)
T ss_pred             CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHH---hc----cCCcEEEEECccCCC
Confidence            36789999999976543211    111  235688999999864332222222222   11    124577899999653

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=92.45  E-value=0.64  Score=28.21  Aligned_cols=34  Identities=9%  Similarity=0.124  Sum_probs=25.4

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECC
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDST   57 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~   57 (126)
                      .+..+.+.||+|.....   ..++..||.++++....
T Consensus        90 ~~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe  123 (148)
T cd03114          90 AGFDVIIVETVGVGQSE---VDIASMADTTVVVMAPG  123 (148)
T ss_pred             cCCCEEEEECCccChhh---hhHHHhCCEEEEEECCC
Confidence            46789999999975322   34788899999987654

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=92.05  E-value=0.96  Score=30.41  Aligned_cols=68  Identities=18%  Similarity=0.160  Sum_probs=40.2

Q ss_pred             CCEEEEEEEcCCCcchHHHHH-------hhc-----cCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEe
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWS-------TYY-----TNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYAN   88 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~-------~~~-----~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n   88 (126)
                      ++..+.+.||+|.........       ...     ..++.+++|+|++..  .+... ....+.+..   + +.-++.|
T Consensus       153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~---~-~~g~IlT  225 (272)
T TIGR00064       153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAV---G-LTGIILT  225 (272)
T ss_pred             CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhC---C-CCEEEEE
Confidence            567899999999865432211       111     248999999998743  22222 223332221   2 3577899


Q ss_pred             cCCCCCC
Q psy6566          89 KQDIKNS   95 (126)
Q Consensus        89 K~D~~~~   95 (126)
                      |.|....
T Consensus       226 KlDe~~~  232 (272)
T TIGR00064       226 KLDGTAK  232 (272)
T ss_pred             ccCCCCC
Confidence            9997553

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=92.02  E-value=1.8  Score=26.61  Aligned_cols=67  Identities=13%  Similarity=0.148  Sum_probs=39.2

Q ss_pred             CCEEEEEEEcCCCcchHHH----HHhh--ccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566          21 KNIHFIMWDLGGQQSLRAA----WSTY--YTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~----~~~~--~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~   94 (126)
                      ++..+.+.||+|...+...    ....  ....+.+++|+|.....   +..+....+.+..   + ..-++.||.|...
T Consensus        81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---~~~~~~~~~~~~~---~-~~~viltk~D~~~  153 (173)
T cd03115          81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---DAVNQAKAFNEAL---G-ITGVILTKLDGDA  153 (173)
T ss_pred             CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---HHHHHHHHHHhhC---C-CCEEEEECCcCCC
Confidence            4567889999997533211    1111  23589999999986432   2323344443331   2 2466779999765

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>KOG2423|consensus

Probab=91.77  E-value=0.43  Score=34.01  Aligned_cols=48  Identities=19%  Similarity=0.284  Sum_probs=34.5

Q ss_pred             ccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566          44 YTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        44 ~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~   94 (126)
                      +...|+++-|+|+-+|-.  .-...++.+++... +..-+++|+||+||..
T Consensus       211 iDSSDVvvqVlDARDPmG--Trc~~ve~ylkke~-phKHli~vLNKvDLVP  258 (572)
T KOG2423|consen  211 IDSSDVVVQVLDARDPMG--TRCKHVEEYLKKEK-PHKHLIYVLNKVDLVP  258 (572)
T ss_pred             hcccceeEEeeeccCCcc--cccHHHHHHHhhcC-CcceeEEEeecccccc
Confidence            557899999999877632  12334666666543 5667899999999975

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=91.55  E-value=0.096  Score=33.38  Aligned_cols=87  Identities=21%  Similarity=0.187  Sum_probs=45.4

Q ss_pred             EEEEEEEcCCCcchHHHHHhhcc-CCcEEEEEEECCCcccHHHHHHHHHHHhC-CCCCCCCeEEEEEecCCCCCCCCH--
Q psy6566          23 IHFIMWDLGGQQSLRAAWSTYYT-NTEFVILVIDSTDRERISLTKEELYKMLN-HEDLSKAAVLIYANKQDIKNSMSP--   98 (126)
Q Consensus        23 ~~~~i~Dt~G~~~~~~~~~~~~~-~~~~~l~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~piilv~nK~D~~~~~~~--   98 (126)
                      ..+.|...+|.  .-  .+..+. ..+.-++|+|.++-+..-         .+ .+.... .=++|+||.|+......  
T Consensus        97 ~Dll~iEs~GN--L~--~~~sp~L~d~~~v~VidvteGe~~P---------~K~gP~i~~-aDllVInK~DLa~~v~~dl  162 (202)
T COG0378          97 LDLLFIESVGN--LV--CPFSPDLGDHLRVVVIDVTEGEDIP---------RKGGPGIFK-ADLLVINKTDLAPYVGADL  162 (202)
T ss_pred             CCEEEEecCcc--ee--cccCcchhhceEEEEEECCCCCCCc---------ccCCCceeE-eeEEEEehHHhHHHhCccH
Confidence            35666666661  11  111122 234788888987643110         01 122122 45789999999764322  


Q ss_pred             HHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          99 VEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        99 ~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +.......+   -..+.+++++|+++|+
T Consensus       163 evm~~da~~---~np~~~ii~~n~ktg~  187 (202)
T COG0378         163 EVMARDAKE---VNPEAPIIFTNLKTGE  187 (202)
T ss_pred             HHHHHHHHH---hCCCCCEEEEeCCCCc
Confidence            222221111   1235689999999985

>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ

Probab=91.31  E-value=1.6  Score=28.41  Aligned_cols=67  Identities=7%  Similarity=0.130  Sum_probs=43.8

Q ss_pred             EEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566          24 HFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        24 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~   94 (126)
                      .+.++||++.  ........+..+|.+++++..+ ..+...+...+..+.+.. ....++-++.|+.|...
T Consensus       116 D~viiD~pp~--~~~~~~~~l~~ad~vii~~~~~-~~s~~~~~~~~~~l~~~~-~~~~~~~iv~n~~~~~~  182 (246)
T TIGR03371       116 DWVLIDVPRG--PSPITRQALAAADLVLVVVNAD-AACYATLHQQALALFAGS-GPRIGPHFLINQFDPAR  182 (246)
T ss_pred             CEEEEECCCC--chHHHHHHHHhCCeEEEEeCCC-HHHHHHHHHHHHHHhhcc-cccccceEEeeccCcch
Confidence            7999999985  3444556678899999998764 345555543343444321 13445778999998643

Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>KOG0780|consensus

Probab=91.23  E-value=1.7  Score=31.01  Aligned_cols=52  Identities=13%  Similarity=0.207  Sum_probs=33.8

Q ss_pred             CCEEEEEEEcCCCcchH-----HHHH-hhccCCcEEEEEEECCCcccHHHHHHHHHHH
Q psy6566          21 KNIHFIMWDLGGQQSLR-----AAWS-TYYTNTEFVILVIDSTDRERISLTKEELYKM   72 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~-----~~~~-~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~   72 (126)
                      +++.+.|.||+|+-.-.     .+.+ .-.-+.+-+|||.|++--...++....+++.
T Consensus       182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~  239 (483)
T KOG0780|consen  182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKET  239 (483)
T ss_pred             cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHh
Confidence            78899999999964432     2222 1244689999999988655444444444443

>PHA02518 ParA-like protein; Provisional

Probab=90.84  E-value=2.6  Score=26.64  Aligned_cols=67  Identities=7%  Similarity=0.017  Sum_probs=40.1

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHH---HHHHHHHhCCCCCCCCe-EEEEEecCCC
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT---KEELYKMLNHEDLSKAA-VLIYANKQDI   92 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~---~~~~~~~~~~~~~~~~p-iilv~nK~D~   92 (126)
                      ....+.++||+|..  .......+..+|.+++++..+. .++..+   ..++.......  ...| ..++.|+.+.
T Consensus        75 ~~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~iv~n~~~~  145 (211)
T PHA02518         75 SGYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSP-FDIWAAPDLVELIKARQEVT--DGLPKFAFIISRAIK  145 (211)
T ss_pred             ccCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCCh-hhHHHHHHHHHHHHHHHhhC--CCCceEEEEEeccCC
Confidence            44679999999873  3445567888999999987653 333333   33333321111  2344 4566677653

>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]

Probab=90.78  E-value=3.1  Score=28.14  Aligned_cols=66  Identities=17%  Similarity=0.215  Sum_probs=42.3

Q ss_pred             EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCC
Q psy6566          23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNS   95 (126)
Q Consensus        23 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~   95 (126)
                      ..+.|.|+|-.-  .-..-..+.++|.+++|--.| +-.+.+++..+ ++.+.   -++|..++.||.++...
T Consensus       164 ~~~~IIDsaaG~--gCpVi~sl~~aD~ai~VTEPT-p~glhD~kr~~-el~~~---f~ip~~iViNr~~~g~s  229 (284)
T COG1149         164 ADLLIIDSAAGT--GCPVIASLKGADLAILVTEPT-PFGLHDLKRAL-ELVEH---FGIPTGIVINRYNLGDS  229 (284)
T ss_pred             cceeEEecCCCC--CChHHHhhccCCEEEEEecCC-ccchhHHHHHH-HHHHH---hCCceEEEEecCCCCch
Confidence            567788886221  112334688999999987655 34555555433 33333   57999999999965543

>TIGR01007 eps_fam capsular exopolysaccharide family

Probab=90.31  E-value=3.2  Score=26.31  Aligned_cols=69  Identities=16%  Similarity=0.139  Sum_probs=41.7

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~   94 (126)
                      +...+.+.|+|..... .......+.+|.+++|.+.. ..+...+.+....+ +..  ....+-+|.||.|...
T Consensus       126 ~~yD~ViiD~pp~~~~-~~~~~~~~~~D~vilV~~~~-~~~~~~~~~~~~~l-~~~--~~~~~gvVlN~~~~~~  194 (204)
T TIGR01007       126 KYFDYIIIDTPPIGTV-TDAAIIARACDASILVTDAG-EIKKRDVQKAKEQL-EQT--GSNFLGVVLNKVDISV  194 (204)
T ss_pred             hcCCEEEEeCCCcccc-chHHHHHHhCCeEEEEEECC-CCCHHHHHHHHHHH-HhC--CCCEEEEEEeCccccc
Confidence            4567889999863221 11223456799999999864 34555555544433 321  2235678999998654

This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.

>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily

Probab=89.26  E-value=3.5  Score=25.28  Aligned_cols=67  Identities=4%  Similarity=0.029  Sum_probs=42.1

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhh-ccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCC
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTY-YTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDI   92 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~-~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~   92 (126)
                      ++..+.+.|+|+.-.-... ... ...+|.++++.... +.+...+...+..+.+.   .-...-++.|+.+.
T Consensus        66 ~~yD~VIiD~pp~~~~~~~-~~~~~~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~---~~~~~gvv~N~~~~  133 (169)
T cd02037          66 GELDYLVIDMPPGTGDEHL-TLAQSLPIDGAVIVTTPQ-EVALDDVRKAIDMFKKV---NIPILGVVENMSYF  133 (169)
T ss_pred             CCCCEEEEeCCCCCcHHHH-HHHhccCCCeEEEEECCc-hhhHHHHHHHHHHHHhc---CCCeEEEEEcCCcc
Confidence            4677999999986432222 111 25789999998754 45666666655555433   22345678999874

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.

>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional

Probab=88.79  E-value=1.8  Score=28.75  Aligned_cols=69  Identities=13%  Similarity=0.213  Sum_probs=40.5

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE-EEEEecCC
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV-LIYANKQD   91 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~D   91 (126)
                      +...+.++||+|.-.... ....+..||.+++++.. +..++..+...+..+.+.....++++ -++.|+.+
T Consensus       116 ~~yD~viIDt~g~~~~~~-~~~~l~~AD~viip~~~-~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~  185 (270)
T PRK13185        116 DDYDVILFDVLGDVVCGG-FAAPLQYADYALIVTAN-DFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSA  185 (270)
T ss_pred             ccCCEEEEecCCCcccCc-ccchhhhCcEEEEEecC-chhhHHHHHHHHHHHHhhhhccCCCceEEEEeccC
Confidence            457799999987643222 22236679999998864 44555555544433321111145654 47889976

>KOG0781|consensus

Probab=88.55  E-value=5.6  Score=29.33  Aligned_cols=73  Identities=12%  Similarity=0.215  Sum_probs=46.7

Q ss_pred             CCEEEEEEEcCCCcchHHH-H---H--hhccCCcEEEEEEECC-CcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566          21 KNIHFIMWDLGGQQSLRAA-W---S--TYYTNTEFVILVIDST-DRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK   93 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~-~---~--~~~~~~~~~l~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~   93 (126)
                      ++..+.+.||+|+..-... .   .  .-....|.++||-.+. ..++.+.+.+ +...+.....+..---++.+|+|-.
T Consensus       465 ~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~-fn~al~~~~~~r~id~~~ltk~dtv  543 (587)
T KOG0781|consen  465 QGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKK-FNRALADHSTPRLIDGILLTKFDTV  543 (587)
T ss_pred             cCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHH-HHHHHhcCCCccccceEEEEeccch
Confidence            6778999999997543321 1   1  1256789999997543 4467777765 5555555433333345688999965


Q ss_pred             C
Q psy6566          94 N   94 (126)
Q Consensus        94 ~   94 (126)
                      +
T Consensus       544 ~  544 (587)
T KOG0781|consen  544 D  544 (587)
T ss_pred             h
Confidence            5

>TIGR01969 minD_arch cell division ATPase MinD, archaeal

Probab=88.53  E-value=3.3  Score=26.96  Aligned_cols=66  Identities=11%  Similarity=0.094  Sum_probs=41.4

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC-eEEEEEecCCCC
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA-AVLIYANKQDIK   93 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-piilv~nK~D~~   93 (126)
                      +...+.++|+++.....  ....+..+|.++++++.+ ..++..+.... +..+.   .+. .+.++.|+.+..
T Consensus       107 ~~yD~VIiD~p~~~~~~--~~~~l~~ad~vliv~~~~-~~s~~~~~~~~-~~~~~---~~~~~~~vv~N~~~~~  173 (251)
T TIGR01969       107 DDTDFLLIDAPAGLERD--AVTALAAADELLLVVNPE-ISSITDALKTK-IVAEK---LGTAILGVVLNRVTRD  173 (251)
T ss_pred             hhCCEEEEeCCCccCHH--HHHHHHhCCeEEEEECCC-CchHHHHHHHH-HHHHh---cCCceEEEEEECCCch
Confidence            45789999999865433  333456799999999865 34555544432 22222   233 356899998754

This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.

>TIGR01968 minD_bact septum site-determining protein MinD

Probab=88.11  E-value=3.9  Score=26.79  Aligned_cols=66  Identities=6%  Similarity=0.072  Sum_probs=41.9

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCC
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDI   92 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~   92 (126)
                      +...+.++|+|+.....  ....+..+|.+++++... ..++..+...+..+.+.   ...++.++.|+.+.
T Consensus       110 ~~~D~viiD~p~~~~~~--~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~iviN~~~~  175 (261)
T TIGR01968       110 EEFDYVIIDCPAGIESG--FRNAVAPADEAIVVTTPE-VSAVRDADRVIGLLEAK---GIEKIHLIVNRLRP  175 (261)
T ss_pred             HhCCEEEEeCCCCcCHH--HHHHHHhCCeEEEEcCCC-cHHHHHHHHHHHHHHHc---CCCceEEEEeCcCc
Confidence            34678899998864332  334567799999988754 45566665544433322   12367788899874

This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.

>CHL00175 minD septum-site determining protein; Validated

Probab=88.09  E-value=3.5  Score=27.58  Aligned_cols=65  Identities=11%  Similarity=0.056  Sum_probs=40.8

Q ss_pred             CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCC
Q psy6566          22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDI   92 (126)
Q Consensus        22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~   92 (126)
                      ...+.++|||+.-..  .....+..+|.+++|++.+ ..+...+...+..+.+. .  ...+-++.|+.+.
T Consensus       126 ~yD~VIiDtpp~~~~--~~~~~l~~aD~viiV~~p~-~~si~~~~~~~~~l~~~-~--~~~~~lvvN~~~~  190 (281)
T CHL00175        126 GYDYILIDCPAGIDV--GFINAIAPAQEAIVVTTPE-ITAIRDADRVAGLLEAN-G--IYNVKLLVNRVRP  190 (281)
T ss_pred             CCCEEEEeCCCCCCH--HHHHHHHhcCeeEEEcCCC-hHHHHHHHHHHHHHHHc-C--CCceEEEEeccCh
Confidence            567899999986433  2333456799999988743 45666665544444332 2  2245678899874

>cd02032 Bchl_like This family of proteins contains bchL and chlL

Probab=87.87  E-value=2.3  Score=28.21  Aligned_cols=70  Identities=14%  Similarity=0.193  Sum_probs=39.1

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEecCCC
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLIYANKQDI   92 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~   92 (126)
                      +...+.+.||+|....... ...+..||.++++...+ ..++..+...+..+.......+.+ .-++.|+.+.
T Consensus       114 ~~yD~vIIDt~g~~~~~~~-~~al~~aD~vlip~~p~-~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~  184 (267)
T cd02032         114 EEYDVILFDVLGDVVCGGF-AAPLNYADYALIVTDND-FDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK  184 (267)
T ss_pred             ccCCEEEEeCCCCcccccc-hhhhhhcCEEEEEecCC-cccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence            3467899999876432211 12367799999988654 344444433332221111113454 3468899874

Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.

>PRK14974 cell division protein FtsY; Provisional

Probab=87.82  E-value=2.7  Score=29.26  Aligned_cols=68  Identities=16%  Similarity=0.148  Sum_probs=38.5

Q ss_pred             CCEEEEEEEcCCCcchHH-H---HHhh--ccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566          21 KNIHFIMWDLGGQQSLRA-A---WSTY--YTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~-~---~~~~--~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~   94 (126)
                      .+..+.+.||+|...... +   ....  .-..+.+++|+|++......+.   ...+.+.   -+ .--++.||.|...
T Consensus       221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~---a~~f~~~---~~-~~giIlTKlD~~~  293 (336)
T PRK14974        221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQ---AREFNEA---VG-IDGVILTKVDADA  293 (336)
T ss_pred             CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHH---HHHHHhc---CC-CCEEEEeeecCCC
Confidence            456799999999864322 1   1111  2357889999998653321111   2222211   12 2467889999765


Q ss_pred             C
Q psy6566          95 S   95 (126)
Q Consensus        95 ~   95 (126)
                      .
T Consensus       294 ~  294 (336)
T PRK14974        294 K  294 (336)
T ss_pred             C
Confidence            3

>PF14331 ImcF-related_N: ImcF-related N-terminal domain

Probab=87.39  E-value=1.1  Score=30.00  Aligned_cols=48  Identities=17%  Similarity=0.185  Sum_probs=29.5

Q ss_pred             CCcEEEEEEECCCc-----c--cHHHH----HHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566          46 NTEFVILVIDSTDR-----E--RISLT----KEELYKMLNHEDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        46 ~~~~~l~v~d~~~~-----~--~~~~~----~~~~~~~~~~~~~~~~piilv~nK~D~~~   94 (126)
                      -.+|+|+++++.+.     .  .+...    +.-+.++.+.-+ ...||.++++|+|+..
T Consensus        25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg-~~~PVYvv~Tk~D~l~   83 (266)
T PF14331_consen   25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLG-VRLPVYVVFTKCDLLP   83 (266)
T ss_pred             CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhC-CCCCeEeeeECCCccc
Confidence            46999999997632     1  11222    222333332222 4799999999999864

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=87.12  E-value=5.4  Score=27.68  Aligned_cols=68  Identities=19%  Similarity=0.118  Sum_probs=38.6

Q ss_pred             EEEEEEEcCCCcchHHHHHhhcc--------CCcEEEEEEECCCcccHHH-HHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566          23 IHFIMWDLGGQQSLRAAWSTYYT--------NTEFVILVIDSTDRERISL-TKEELYKMLNHEDLSKAAVLIYANKQDIK   93 (126)
Q Consensus        23 ~~~~i~Dt~G~~~~~~~~~~~~~--------~~~~~l~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~D~~   93 (126)
                      ....++.|.|...-.+....+..        ..++++-|+|+..-..-.. .......-+..      -=+++.||.|+.
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~------AD~ivlNK~Dlv  158 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF------ADVIVLNKTDLV  158 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh------CcEEEEecccCC
Confidence            44557788887655554444332        3577999999765322111 22222222221      227899999998


Q ss_pred             CCC
Q psy6566          94 NSM   96 (126)
Q Consensus        94 ~~~   96 (126)
                      .+.
T Consensus       159 ~~~  161 (323)
T COG0523         159 DAE  161 (323)
T ss_pred             CHH
Confidence            753

>TIGR00959 ffh signal recognition particle protein

Probab=86.38  E-value=2.8  Score=30.25  Aligned_cols=67  Identities=12%  Similarity=0.115  Sum_probs=38.1

Q ss_pred             CCEEEEEEEcCCCcchHH-HHH---h--hccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566          21 KNIHFIMWDLGGQQSLRA-AWS---T--YYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~-~~~---~--~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~   94 (126)
                      ++..+.+.||+|...... ...   .  ..-..+.+++|+|++..   +++......+....   + ..=++.||.|-..
T Consensus       181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v---~-i~giIlTKlD~~~  253 (428)
T TIGR00959       181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL---G-LTGVVLTKLDGDA  253 (428)
T ss_pred             cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC---C-CCEEEEeCccCcc
Confidence            456799999999644321 111   1  13357889999997643   33333333332221   2 2356789999543

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=86.10  E-value=4.2  Score=22.60  Aligned_cols=45  Identities=11%  Similarity=0.138  Sum_probs=30.8

Q ss_pred             EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHH
Q psy6566          23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELY   70 (126)
Q Consensus        23 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~   70 (126)
                      ..+.++|+++.....  ....+..+|.++++++.+ ..++......+.
T Consensus        40 ~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~-~~s~~~~~~~~~   84 (104)
T cd02042          40 YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPS-PLDLDGLEKLLE   84 (104)
T ss_pred             CCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCC-HHHHHHHHHHHH
Confidence            457899999875433  235677899999998754 456666655443

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=85.91  E-value=4.3  Score=28.06  Aligned_cols=67  Identities=16%  Similarity=0.141  Sum_probs=38.3

Q ss_pred             CCEEEEEEEcCCCcchHH--------HHHh---h-ccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEe
Q psy6566          21 KNIHFIMWDLGGQQSLRA--------AWST---Y-YTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYAN   88 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~--------~~~~---~-~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n   88 (126)
                      ++..+.+.||||......        +.+.   . -...+..++|+|++...  +.+.+ ...+.+.   . -+.-++.|
T Consensus       195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~---~-~~~giIlT  267 (318)
T PRK10416        195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEA---V-GLTGIILT  267 (318)
T ss_pred             CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhh---C-CCCEEEEE
Confidence            567899999999754222        1111   1 13467899999988532  22222 2222211   1 24478899


Q ss_pred             cCCCCC
Q psy6566          89 KQDIKN   94 (126)
Q Consensus        89 K~D~~~   94 (126)
                      |.|...
T Consensus       268 KlD~t~  273 (318)
T PRK10416        268 KLDGTA  273 (318)
T ss_pred             CCCCCC
Confidence            999543

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=85.43  E-value=4.2  Score=26.04  Aligned_cols=72  Identities=6%  Similarity=0.021  Sum_probs=39.9

Q ss_pred             CCEEEEEEEcCCCcchHHHHH-hhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEecCCCC
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWS-TYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLIYANKQDIK   93 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~-~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~   93 (126)
                      +...+.+.|++|......... ...+.||.++++++.+ ..++..+...++.+-......+.+ ..++.|+.+..
T Consensus       115 ~~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~  188 (212)
T cd02117         115 DDLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGE-FMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD  188 (212)
T ss_pred             cCCCEEEEecCCCceecccccccccccCcEEEEEeccc-HHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc
Confidence            457899999977643222211 1124799999998754 344444433332222211112333 45899999854

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>PRK13849 putative crown gall tumor protein VirC1; Provisional

Probab=85.23  E-value=5.1  Score=26.29  Aligned_cols=68  Identities=10%  Similarity=0.093  Sum_probs=43.1

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCC--CCCCCCeEEEEEecCC
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNH--EDLSKAAVLIYANKQD   91 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~piilv~nK~D   91 (126)
                      +...+.|.||+|...  ......+..+|.++..+..+. ..+..+...+..+.+.  ...++.|..++.|.++
T Consensus        82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~-~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~  151 (231)
T PRK13849         82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTP-LDIDEALSTYRYVIELLLSENLAIPTAILRQRVP  151 (231)
T ss_pred             CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcH-HHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence            457899999999764  334456778999998877543 3344443433332221  1124678789999886

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=84.95  E-value=7.5  Score=27.16  Aligned_cols=64  Identities=19%  Similarity=0.229  Sum_probs=38.4

Q ss_pred             CCEEEEEEEcCCCcchHHH-------HHhhccC-----CcEEEEEEECCCc-ccHHHHHHHHHHHhCCCCCCCCeEEEEE
Q psy6566          21 KNIHFIMWDLGGQQSLRAA-------WSTYYTN-----TEFVILVIDSTDR-ERISLTKEELYKMLNHEDLSKAAVLIYA   87 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~-------~~~~~~~-----~~~~l~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~piilv~   87 (126)
                      +++.+.+.||+|+-.....       ..+..+.     .+-+++++|++-- +.+.+++ .+.+...      +- -++.
T Consensus       220 r~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk-~F~eav~------l~-GiIl  291 (340)
T COG0552         220 RGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAK-IFNEAVG------LD-GIIL  291 (340)
T ss_pred             cCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHH-HHHHhcC------Cc-eEEE
Confidence            6788999999997554321       1122332     3448888898754 4555554 3554432      22 4678


Q ss_pred             ecCCC
Q psy6566          88 NKQDI   92 (126)
Q Consensus        88 nK~D~   92 (126)
                      +|.|-
T Consensus       292 TKlDg  296 (340)
T COG0552         292 TKLDG  296 (340)
T ss_pred             Eeccc
Confidence            99994

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=84.89  E-value=7.4  Score=28.25  Aligned_cols=66  Identities=21%  Similarity=0.168  Sum_probs=37.9

Q ss_pred             CEEEEEEEcCCCcchHHHH------HhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566          22 NIHFIMWDLGGQQSLRAAW------STYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        22 ~~~~~i~Dt~G~~~~~~~~------~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~   94 (126)
                      ...+.+.||+|+.......      ......++.+++|+|++...   +.......+...   -+ ..-++.||.|-..
T Consensus       175 ~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~---l~-i~gvIlTKlD~~a  246 (437)
T PRK00771        175 KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEA---VG-IGGIIITKLDGTA  246 (437)
T ss_pred             cCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhc---CC-CCEEEEecccCCC
Confidence            3478999999976643221      11134688999999986532   222222222111   11 2356789999654

>PRK09602 translation-associated GTPase; Reviewed

Probab=84.57  E-value=1.4  Score=31.42  Aligned_cols=40  Identities=20%  Similarity=0.216  Sum_probs=24.0

Q ss_pred             CCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          79 SKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        79 ~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      ...|+++++||.|+....  ..+......     ....++.+||+.+
T Consensus       216 t~KPvI~VlNK~D~~~~~--~~l~~i~~~-----~~~~vvpISA~~e  255 (396)
T PRK09602        216 ISKPMVIAANKADLPPAE--ENIERLKEE-----KYYIVVPTSAEAE  255 (396)
T ss_pred             cCCCEEEEEEchhcccch--HHHHHHHhc-----CCCcEEEEcchhh
Confidence            458999999999975321  112211111     2335789998765

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=84.33  E-value=9.3  Score=27.74  Aligned_cols=65  Identities=15%  Similarity=0.157  Sum_probs=38.7

Q ss_pred             CCEEEEEEEcCCCcchHHH-H-----HhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCC
Q psy6566          21 KNIHFIMWDLGGQQSLRAA-W-----STYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDI   92 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~-~-----~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~   92 (126)
                      .+..+.|.||+|+-..... .     -.-.-+.+-+++|+|+.--....+..+-+.+.+..   .    =++.+|.|-
T Consensus       181 ~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~i---t----GvIlTKlDG  251 (451)
T COG0541         181 EGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGI---T----GVILTKLDG  251 (451)
T ss_pred             cCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCC---c----eEEEEcccC
Confidence            5568999999997554331 1     11244689999999987544444444444443221   1    245677774

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=83.56  E-value=9.2  Score=24.41  Aligned_cols=67  Identities=15%  Similarity=0.125  Sum_probs=36.5

Q ss_pred             CCEEEEEEEcCCCcchHHH----HHhh--ccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566          21 KNIHFIMWDLGGQQSLRAA----WSTY--YTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~----~~~~--~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~   94 (126)
                      ++..+.+.||+|.......    ...+  ....+-+++|.+++...  +.+.. .....+.   -++. =++.+|.|-..
T Consensus        82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--~~~~~-~~~~~~~---~~~~-~lIlTKlDet~  154 (196)
T PF00448_consen   82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--EDLEQ-ALAFYEA---FGID-GLILTKLDETA  154 (196)
T ss_dssp             TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--HHHHH-HHHHHHH---SSTC-EEEEESTTSSS
T ss_pred             cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--HHHHH-HHHHhhc---ccCc-eEEEEeecCCC
Confidence            4567999999997654331    1111  12577889999887543  22222 2222111   1222 45689999755

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>CHL00072 chlL photochlorophyllide reductase subunit L

Probab=83.32  E-value=7.2  Score=26.51  Aligned_cols=66  Identities=9%  Similarity=0.116  Sum_probs=38.6

Q ss_pred             CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHH---HHHhCCCCCCCCe-EEEEEecCCC
Q psy6566          22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEEL---YKMLNHEDLSKAA-VLIYANKQDI   92 (126)
Q Consensus        22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~---~~~~~~~~~~~~p-iilv~nK~D~   92 (126)
                      ...+.+.||+|.-...... ..+..||.+++++... ..++..+...+   +...+.   ++.+ .-++.|+.+.
T Consensus       115 ~yD~IiIDt~~~l~~~a~~-aal~~AD~viIp~~p~-~~sl~~~~~l~~~i~~~~~~---~~l~~~gvv~n~~~~  184 (290)
T CHL00072        115 EYDIILFDVLGDVVCGGFA-APLNYADYCIIITDNG-FDALFAANRIAASVREKART---HPLRLAGLVGNRTSK  184 (290)
T ss_pred             cCCEEEEecCCcceechhh-hhhhcCCEEEEEecCC-HHHHHHHHHHHHHHHHHhcc---CCCceEEEEEeCCCc
Confidence            5678999998763222221 2357799999988753 44555554433   333221   3343 4478899873

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=82.59  E-value=7.1  Score=27.27  Aligned_cols=36  Identities=14%  Similarity=0.214  Sum_probs=25.1

Q ss_pred             EEEEEEEcCCCcchHHHHHhhc-------cCCcEEEEEEECCC
Q psy6566          23 IHFIMWDLGGQQSLRAAWSTYY-------TNTEFVILVIDSTD   58 (126)
Q Consensus        23 ~~~~i~Dt~G~~~~~~~~~~~~-------~~~~~~l~v~d~~~   58 (126)
                      ....+..+.|...-..+...+.       -..++++.|+|+.+
T Consensus        93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~  135 (341)
T TIGR02475        93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPA  135 (341)
T ss_pred             CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECch
Confidence            4567889999877666555431       14578999999863

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>PRK10818 cell division inhibitor MinD; Provisional

Probab=81.52  E-value=10  Score=25.12  Aligned_cols=69  Identities=7%  Similarity=-0.005  Sum_probs=42.5

Q ss_pred             CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCC-----CCCCCCeEEEEEecCCCC
Q psy6566          22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNH-----EDLSKAAVLIYANKQDIK   93 (126)
Q Consensus        22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~piilv~nK~D~~   93 (126)
                      ...+.+.|+|+.-...  ....+..+|.++++++.+ ..++..+...++.+...     ....+.+..++.|+.+..
T Consensus       113 ~yd~viiD~p~~~~~~--~~~~l~~ad~vivv~~p~-~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~  186 (270)
T PRK10818        113 DFEFIVCDSPAGIETG--ALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPG  186 (270)
T ss_pred             CCCEEEEeCCCCccHH--HHHHHHhCCeEEEEcCCC-chHHHhHHHHHHHHHHhhccccccccccceEEEEeccCHh
Confidence            5789999998775433  233467899999998865 44555555544443211     111134457788988743

>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein

Probab=80.94  E-value=6.1  Score=26.24  Aligned_cols=71  Identities=13%  Similarity=0.174  Sum_probs=39.3

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEecCCCC
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLIYANKQDIK   93 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~   93 (126)
                      +...+.+.||+|.-..... ...+..+|.+++++.. +..++..+...+..+.+.....+++ ..++.|+.+..
T Consensus       114 ~~yD~ViID~~~~~~~~~~-~~~l~aAD~vlip~~~-~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~  185 (268)
T TIGR01281       114 DDYDVILFDVLGDVVCGGF-ATPLQYADYALVVAAN-DFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDAT  185 (268)
T ss_pred             ccCCEEEEecCCccccCcc-ccchhhcCEEEEEecC-chhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCChH
Confidence            4578899999875322111 1236779999998754 3444544444333222211113454 45788998743

The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.

>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases

Probab=80.79  E-value=5.1  Score=24.87  Aligned_cols=68  Identities=15%  Similarity=0.124  Sum_probs=45.2

Q ss_pred             EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566          23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        23 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~   94 (126)
                      ..+.+.|+++.....  ....+..+|.++++++.+. .+...+..+...+..... .-..+.++.||.+..+
T Consensus        95 yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~-~~i~~~~~~~~~l~~~~~-~~~~~~vv~N~v~~~~  162 (195)
T PF01656_consen   95 YDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDP-SSIEGAERLIELLKRLGK-KLKIIGVVINRVDPGN  162 (195)
T ss_dssp             SSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSH-HHHHHHHHHHHHHHHHTH-TEEEEEEEEEEETSCC
T ss_pred             ccceeecccccccHH--HHHHHHhCceeeeecCCcH-HHHHHHHHHHHHHHHhcc-ccceEEEEEeeeCCCc
Confidence            678999999865444  4456778999999998653 456666655444432211 1235788999998654

These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....

>KOG4273|consensus

Probab=80.61  E-value=1.7  Score=29.13  Aligned_cols=47  Identities=15%  Similarity=0.137  Sum_probs=32.0

Q ss_pred             cCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566          45 TNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        45 ~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~   94 (126)
                      +...+++++||.++...+..+..|+..-.-+.  -++ ++.++||.|...
T Consensus        77 ~pl~a~vmvfdlse~s~l~alqdwl~htdins--fdi-llcignkvdrvp  123 (418)
T KOG4273|consen   77 EPLQAFVMVFDLSEKSGLDALQDWLPHTDINS--FDI-LLCIGNKVDRVP  123 (418)
T ss_pred             cceeeEEEEEeccchhhhHHHHhhcccccccc--chh-heeccccccccc
Confidence            34567899999999888888888764332111  122 466899999643

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.19  E-value=6.5  Score=32.18  Aligned_cols=72  Identities=17%  Similarity=0.217  Sum_probs=42.1

Q ss_pred             CEEEEEEEcCCCc--------chHHHHHhh---------ccCCcEEEEEEECCCccc---------HHHHHHHHHHHhCC
Q psy6566          22 NIHFIMWDLGGQQ--------SLRAAWSTY---------YTNTEFVILVIDSTDRER---------ISLTKEELYKMLNH   75 (126)
Q Consensus        22 ~~~~~i~Dt~G~~--------~~~~~~~~~---------~~~~~~~l~v~d~~~~~~---------~~~~~~~~~~~~~~   75 (126)
                      +-.-.++||+|..        .-+..|..+         .+-.+|||+.+++.+.-+         ...++.-+.++.+.
T Consensus       173 ~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t  252 (1188)
T COG3523         173 TDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET  252 (1188)
T ss_pred             ccceEEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            3446688999942        233456544         346799999999764211         11111112222221


Q ss_pred             CCCCCCeEEEEEecCCCCC
Q psy6566          76 EDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        76 ~~~~~~piilv~nK~D~~~   94 (126)
                       -.-..|+.+++||.|+..
T Consensus       253 -L~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         253 -LHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             -hccCCceEEEEecccccc
Confidence             114789999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	126
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		2e-54
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		2e-54
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		3e-54
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		3e-54
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		4e-54
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		3e-35
3aq4_A	184	Molecular Insights Into Plant Cell Proliferation Di		2e-34
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		9e-34
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		1e-33
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		1e-33
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		2e-33
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		2e-33
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		2e-33
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		3e-33
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		5e-33
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		2e-32
1j2j_A	166	Crystal Structure Of Gga1 Gat N-terminal Region In		2e-32
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		3e-32
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		2e-31
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		2e-31
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		2e-31
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		3e-31
4dcn_A	166	Crystal Structure Analysis Of The Arfaptin2 Bar Dom		4e-31
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		4e-31
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		8e-31
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		1e-30
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		2e-30
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		2e-30
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		2e-30
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		3e-30
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		6e-30
1upt_A	171	Structure Of A Complex Of The Golgin-245 Grip Domai		3e-25
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		4e-25
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		5e-25
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		5e-25
2x77_A	189	Crystal Structure Of Leishmania Major Adp Ribosylat		5e-25
1ksj_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme		7e-25
4gok_B	169	The Crystal Structure Of Arl2gppnhp In Complex With		4e-24
4goj_A	189	The Crystal Structure Of Full Length Arl3gppnhp In		4e-23
1fzq_A	181	Crystal Structure Of Murine Arl3-Gdp Length = 181		4e-23
3bh7_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		5e-23
3bh6_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		4e-22
2h57_A	190	Crystal Structure Of Human Adp-Ribosylation Factor-		6e-22
4bas_A	199	Structure Of The Arl6 Bbs3 Small Gtpase From Trypan		2e-18
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		3e-16
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		2e-15
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		3e-15
2qtv_B	167	Structure Of Sec23-Sar1 Complexed With The Active F		1e-10
1m2o_B	190	Crystal Structure Of The Sec23-Sar1 Complex Length		1e-10
2fmx_A	195	An Open Conformation Of Switch I Revealed By Sar1-g		2e-09
1f6b_A	198	Crystal Structure Of Sar1-Gdp Complex Length = 198		2e-09
2fa9_A	189	The Crystal Structure Of Sar1[h79g]-gdp Provides In		2e-09
2gao_A	208	Crystal Structure Of Human Sar1a In Complex With Gd		4e-09
1svk_A	353	Structure Of The K180p Mutant Of Gi Alpha Subunit B		8e-06
1shz_A	340	Crystal Structure Of The P115rhogef Rgrgs Domain In		1e-05
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		5e-05
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		5e-05
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		5e-05
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		5e-05
3d7m_A	354	Crystal Structure Of The G Protein Fast-Exchange Do		5e-05
1y3a_A	329	Structure Of G-Alpha-I1 Bound To A Gdp-Selective Pe		6e-05
2gtp_A	323	Crystal Structure Of The Heterodimeric Complex Of H		6e-05
4g5q_A	330	Structure Of Lgn Gl4GALPHAI1 COMPLEX Length = 330		6e-05
2xns_A	327	Crystal Structure Of Human G Alpha I1 Bound To A De		6e-05
3onw_A	328	Structure Of A G-Alpha-I1 Mutant With Enhanced Affi		6e-05
3ffb_A	360	Crystal Structure Of A Fast Activating G Protein Mu		6e-05
2zjy_A	356	Structure Of The K349p Mutant Of Gi Alpha 1 Subunit		6e-05
1as0_A	353	Gtp-Gamma-S Bound G42v Gia1 Length = 353		6e-05
3qi2_A	328	A Galpha P-Loop Mutation Prevents Transition To The		6e-05
3qe0_A	325	A Galpha-I1 P-Loop Mutation Prevents Transition To		6e-05
2ik8_A	324	Crystal Structure Of The Heterodimeric Complex Of H		6e-05
1kjy_A	325	Crystal Structure Of Human G[alpha]i1 Bound To The		6e-05
1gp2_A	353	G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 Wi		6e-05
1bh2_A	315	A326s Mutant Of An Inhibitory Alpha Subunit Length		7e-05
2g83_A	313	Structure Of Activated G-alpha-i1 Bound To A Nucleo		7e-05
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		9e-05
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		1e-04
3umr_A	354	Crystal Structure Of The G202d Mutant Of Human G-Al		2e-04
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		2e-04
2ihb_A	323	Crystal Structure Of The Heterodimeric Complex Of H		2e-04
4g5o_A	330	Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX Length		2e-04
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		2e-04
4g5r_A	330	Structure Of Lgn Gl4GALPHAI3 COMPLEX Length = 330		2e-04
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		2e-04
2ode_A	350	Crystal Structure Of The Heterodimeric Complex Of H		3e-04
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		3e-04
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		3e-04
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		3e-04
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		4e-04
3ums_A	354	Crystal Structure Of The G202a Mutant Of Human G-Al		4e-04
1gg2_A	353	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		4e-04
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		4e-04
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		4e-04
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		4e-04
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		4e-04
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		4e-04
1fqj_A	325	Crystal Structure Of The Heterotrimeric Complex Of		5e-04
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		5e-04
4fmc_B	171	Espg-Rab1 Complex Length = 171		5e-04
3v00_C	356	Studies Of A Constitutively Active G-Alpha Subunit		5e-04
1gil_A	353	Structure Of Active Conformations Of Gia1 And The M		5e-04
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		6e-04
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		6e-04
1tnd_A	324	The 2.2 Angstroms Crystal Structure Of Transducin-A		7e-04
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		8e-04

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score =  207 bits (526), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 93/126 (73%), Positives = 110/126 (87%)
Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           MNEVVHTSPTIGSNVEE++  N  F+MWD+GGQ+SLR++W+TYYTNTEFVI+V+DSTDRE
Sbjct: 43  MNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 102
Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           RIS+T+EELYKML HEDL KA +LI+ANKQD+K  M+  EIS  L LTSIK  QWHIQ+C
Sbjct: 103 RISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQAC 162
Query: 121 CALTGE 126
           CALTGE
Sbjct: 163 CALTGE 168

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score =  206 bits (525), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 93/126 (73%), Positives = 110/126 (87%)
Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           MNEVVHTSPTIGSNVEE++  N  F+MWD+GGQ+SLR++W+TYYTNTEFVI+V+DSTDRE
Sbjct: 44  MNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 103
Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           RIS+T+EELYKML HEDL KA +LI+ANKQD+K  M+  EIS  L LTSIK  QWHIQ+C
Sbjct: 104 RISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQAC 163
Query: 121 CALTGE 126
           CALTGE
Sbjct: 164 CALTGE 169

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score =  206 bits (524), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 93/126 (73%), Positives = 110/126 (87%)
Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           MNEVVHTSPTIGSNVEE++  N  F+MWD+GGQ+SLR++W+TYYTNTEFVI+V+DSTDRE
Sbjct: 38  MNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 97
Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           RIS+T+EELYKML HEDL KA +LI+ANKQD+K  M+  EIS  L LTSIK  QWHIQ+C
Sbjct: 98  RISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQAC 157
Query: 121 CALTGE 126
           CALTGE
Sbjct: 158 CALTGE 163

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score =  206 bits (524), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 93/126 (73%), Positives = 110/126 (87%)
Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           MNEVVHTSPTIGSNVEE++  N  F+MWD+GGQ+SLR++W+TYYTNTEFVI+V+DSTDRE
Sbjct: 38  MNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 97
Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           RIS+T+EELYKML HEDL KA +LI+ANKQD+K  M+  EIS  L LTSIK  QWHIQ+C
Sbjct: 98  RISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQAC 157
Query: 121 CALTGE 126
           CALTGE
Sbjct: 158 CALTGE 163

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score =  206 bits (523), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 92/126 (73%), Positives = 111/126 (88%)
Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           MNEVVHTSPTIGSNVEE++ KN HF+MWD+GGQ+SLR++W+TYY+NTEF+ILV+DS DRE
Sbjct: 38  MNEVVHTSPTIGSNVEEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRE 97
Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           R+++TKEELY+ML HEDL KAAVLI+ANKQD+K  M+  EIS  L L+SIK   WHIQSC
Sbjct: 98  RLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSC 157
Query: 121 CALTGE 126
           CALTGE
Sbjct: 158 CALTGE 163

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score =  142 bits (359), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 63/126 (50%), Positives = 90/126 (71%)
Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + EVV T PTIG NVE V ++NI F +WD+GGQ  +R  W  YY+NT+ +I V+DS DRE
Sbjct: 39  LGEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRE 98
Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           RI   +EEL++M+N E+L  A +L++ANKQD+ N+MS  E++  L L +I+++ W IQS 
Sbjct: 99  RIDDAREELHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQST 158
Query: 121 CALTGE 126
           CA  G+
Sbjct: 159 CATRGD 164

>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184

Iteration: 1
 Score =  140 bits (353), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 60/126 (47%), Positives = 92/126 (73%)
Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + E+V T PTIG NVE V +KNI F +WD+GGQ  +R  W  Y+ NT+ +I V+DS DR+
Sbjct: 42  LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 101
Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           R+   ++EL++MLN ++L  A +L++ANKQD+ N+M+  EI++ L L S++++ W+IQS 
Sbjct: 102 RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 161
Query: 121 CALTGE 126
           CA +GE
Sbjct: 162 CATSGE 167

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score =  138 bits (347), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 64/126 (50%), Positives = 86/126 (68%)
Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + EV+ T PTIG NVE V +KNI F +WD+GGQ  +R+ W  YY NTE VI V+DS DR 
Sbjct: 39  LGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRS 98
Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           RI   +E + +MLN ++L  AA L++ANKQD+  +MS  EI+  L L SI+ + W IQ+ 
Sbjct: 99  RIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQAT 158
Query: 121 CALTGE 126
           CA +GE
Sbjct: 159 CATSGE 164

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score =  137 bits (346), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 64/126 (50%), Positives = 86/126 (68%)
Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + EV+ T PTIG NVE V +KNI F +WD+GGQ  +R+ W  YY NTE VI V+DS DR 
Sbjct: 22  LGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRS 81
Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           RI   +E + +MLN ++L  AA L++ANKQD+  +MS  EI+  L L SI+ + W IQ+ 
Sbjct: 82  RIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQAT 141
Query: 121 CALTGE 126
           CA +GE
Sbjct: 142 CATSGE 147

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score =  137 bits (346), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/126 (51%), Positives = 85/126 (67%)
Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + EV+ T PTIG NVE V +KNI F +WD+GGQ  +R+ W  YY NTE VI VIDS DR 
Sbjct: 39  LGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRS 98
Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           RI   +E + +MLN ++L  A  L++ANKQD+  +MS  EI+  L L SI+ + W IQS 
Sbjct: 99  RIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQST 158
Query: 121 CALTGE 126
           CA +GE
Sbjct: 159 CATSGE 164

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score =  137 bits (344), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 62/125 (49%), Positives = 88/125 (70%)
Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + EVV T PTIG NVE V +KN+ F +WDLGGQ S+R  W  YY+NT+ VI V+DS DR+
Sbjct: 24  VGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRD 83
Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           RI ++K EL  ML  E+L KA ++++ANKQD++ +M+P E++N L L ++K ++W I   
Sbjct: 84  RIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKT 143
Query: 121 CALTG 125
            A  G
Sbjct: 144 SATKG 148

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score =  136 bits (343), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 59/126 (46%), Positives = 90/126 (71%)
Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + E+V T PTIG NVE V +KNI F +WD+GGQ  +R  W  Y+ NT+ +I V+DS DRE
Sbjct: 38  LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE 97
Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           R++  +EEL +ML  ++L  A +L++ANKQD+ N+M+  EI++ L L S++ + W+IQ+ 
Sbjct: 98  RVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQAT 157
Query: 121 CALTGE 126
           CA +G+
Sbjct: 158 CATSGD 163

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score =  136 bits (343), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 59/126 (46%), Positives = 90/126 (71%)
Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + E+V T PTIG NVE V +KNI F +WD+GGQ  +R  W  Y+ NT+ +I V+DS DRE
Sbjct: 39  LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE 98
Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           R++  +EEL +ML  ++L  A +L++ANKQD+ N+M+  EI++ L L S++ + W+IQ+ 
Sbjct: 99  RVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQAT 158
Query: 121 CALTGE 126
           CA +G+
Sbjct: 159 CATSGD 164

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score =  136 bits (343), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 59/126 (46%), Positives = 90/126 (71%)
Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + E+V T PTIG NVE V +KNI F +WD+GGQ  +R  W  Y+ NT+ +I V+DS DRE
Sbjct: 22  LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE 81
Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           R++  +EEL +ML  ++L  A +L++ANKQD+ N+M+  EI++ L L S++ + W+IQ+ 
Sbjct: 82  RVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQAT 141
Query: 121 CALTGE 126
           CA +G+
Sbjct: 142 CATSGD 147

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score =  135 bits (341), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 59/126 (46%), Positives = 90/126 (71%)
Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + E+V T PTIG NVE V +KNI F +WD+GGQ  +R  W  Y+ NT+ +I V+DS DRE
Sbjct: 187 LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE 246
Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           R++  +EEL +ML  ++L  A +L++ANKQD+ N+M+  EI++ L L S++ + W+IQ+ 
Sbjct: 247 RVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQAT 306
Query: 121 CALTGE 126
           CA +G+
Sbjct: 307 CATSGD 312

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score =  134 bits (336), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/126 (50%), Positives = 85/126 (67%)
Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + EV+ T PTIG NVE V + NI F +WD+GGQ  +R+ W  YY NTE VI V+DS DR 
Sbjct: 39  LGEVITTIPTIGFNVECVQYCNISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRS 98
Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           RI   +E + +MLN ++L  AA L++ANKQD+  +MS  EI+  L L SI+ + W IQ+ 
Sbjct: 99  RIGEAREVMQRMLNEDELCNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQAT 158
Query: 121 CALTGE 126
           CA +GE
Sbjct: 159 CATSGE 164

>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166

Iteration: 1
 Score =  133 bits (335), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 58/126 (46%), Positives = 89/126 (70%)
Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + E+V T PTIG NVE V +KNI F +WD+GG   +R  W  Y+ NT+ +I V+DS DRE
Sbjct: 24  LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGLDKIRPLWRHYFQNTQGLIFVVDSNDRE 83
Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           R++  +EEL +ML  ++L  A +L++ANKQD+ N+M+  EI++ L L S++ + W+IQ+ 
Sbjct: 84  RVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQAT 143
Query: 121 CALTGE 126
           CA +G+
Sbjct: 144 CATSGD 149

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score =  133 bits (334), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 59/126 (46%), Positives = 86/126 (68%)
Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + E+V T PTIG NVE V +KNI F +WD+GGQ  +R  W  YY NT+ +I V+DS DR+
Sbjct: 39  LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRD 98
Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           RI   +EEL KMLN +++  A +L++ANK D+  +MS  E++  L L +IK ++W+ Q+ 
Sbjct: 99  RIGEAREELMKMLNEDEMRNAILLVFANKHDLPQAMSISEVTEKLGLQTIKNRKWYCQTS 158
Query: 121 CALTGE 126
           CA  G+
Sbjct: 159 CATNGD 164

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score =  130 bits (326), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 54/126 (42%), Positives = 85/126 (67%)
Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + + V T PT+G NVE V +KN+ F +WD+GGQ  +R  W  YYT T+ +I V+D  DR+
Sbjct: 22  LGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD 81
Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           RI   ++EL++++N  ++  A +LI+ANKQD+ ++M P EI   L LT I+ + W++Q  
Sbjct: 82  RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPS 141
Query: 121 CALTGE 126
           CA +G+
Sbjct: 142 CATSGD 147

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score =  130 bits (326), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 54/126 (42%), Positives = 85/126 (67%)
Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + + V T PT+G NVE V +KN+ F +WD+GGQ  +R  W  YYT T+ +I V+D  DR+
Sbjct: 34  LGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD 93
Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           RI   ++EL++++N  ++  A +LI+ANKQD+ ++M P EI   L LT I+ + W++Q  
Sbjct: 94  RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPS 153
Query: 121 CALTGE 126
           CA +G+
Sbjct: 154 CATSGD 159

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score =  130 bits (326), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 54/126 (42%), Positives = 85/126 (67%)
Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + + V T PT+G NVE V +KN+ F +WD+GGQ  +R  W  YYT T+ +I V+D  DR+
Sbjct: 35  LGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD 94
Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           RI   ++EL++++N  ++  A +LI+ANKQD+ ++M P EI   L LT I+ + W++Q  
Sbjct: 95  RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPS 154
Query: 121 CALTGE 126
           CA +G+
Sbjct: 155 CATSGD 160

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score =  129 bits (325), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 54/126 (42%), Positives = 85/126 (67%)
Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + + V T PT+G NVE V +KN+ F +WD+GGQ  +R  W  YYT T+ +I V+D  DR+
Sbjct: 22  LGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD 81
Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           RI   ++EL++++N  ++  A +LI+ANKQD+ ++M P EI   L LT I+ + W++Q  
Sbjct: 82  RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPS 141
Query: 121 CALTGE 126
           CA +G+
Sbjct: 142 CATSGD 147

>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166

Iteration: 1
 Score =  129 bits (324), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 60/125 (48%), Positives = 86/125 (68%)
Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + EVV T PTIG NVE V +KN+ F +WDLGG  S+R  W  YY+NT+ VI V+DS DR+
Sbjct: 26  VGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRD 85
Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           RI ++K EL  ML  E+L KA ++++ANKQD++ +M+  E++N L L ++K ++W I   
Sbjct: 86  RIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKT 145
Query: 121 CALTG 125
            A  G
Sbjct: 146 SATKG 150

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score =  129 bits (324), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 54/126 (42%), Positives = 85/126 (67%)
Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + + V T PT+G NVE V +KN+ F +WD+GGQ  +R  W  YYT T+ +I V+D  DR+
Sbjct: 344 LGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD 403
Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           RI   ++EL++++N  ++  A +LI+ANKQD+ ++M P EI   L LT I+ + W++Q  
Sbjct: 404 RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPS 463
Query: 121 CALTGE 126
           CA +G+
Sbjct: 464 CATSGD 469

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score =  128 bits (321), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 56/125 (44%), Positives = 85/125 (68%)
Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + E+V T PTIG NVE V +KNI F +WD+GGQ  +R  W  Y+ NT+ +I V+DS DRE
Sbjct: 51  LGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE 110
Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           R+  + +EL KML  ++L  A +L++ANKQD+ N+M   E+++ L L  ++ + W++Q+ 
Sbjct: 111 RVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQAT 170
Query: 121 CALTG 125
           CA  G
Sbjct: 171 CATQG 175

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score =  128 bits (321), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 58/125 (46%), Positives = 86/125 (68%)
Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + E+V T PTIG NVE V +KNI F +WD+GGQ  +R  W  Y+ NT+ +I V+DS DRE
Sbjct: 39  LGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRE 98
Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           RI    +EL KML  ++L  A +L++ANKQD+ N+M+  E+++ L L S++ + W++Q+ 
Sbjct: 99  RIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQAT 158
Query: 121 CALTG 125
           CA  G
Sbjct: 159 CATQG 163

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score =  127 bits (318), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 53/126 (42%), Positives = 84/126 (66%)
Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + + V T PT+G NVE V +KN+ F +WD+GG   +R  W  YYT T+ +I V+D  DR+
Sbjct: 35  LGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRD 94
Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           RI   ++EL++++N  ++  A +LI+ANKQD+ ++M P EI   L LT I+ + W++Q  
Sbjct: 95  RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPS 154
Query: 121 CALTGE 126
           CA +G+
Sbjct: 155 CATSGD 160

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score =  127 bits (318), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 53/126 (42%), Positives = 84/126 (66%)
Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + + V T PT+G NVE V +KN+ F +WD+GG   +R  W  YYT T+ +I V+D  DR+
Sbjct: 25  LGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRD 84
Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           RI   ++EL++++N  ++  A +LI+ANKQD+ ++M P EI   L LT I+ + W++Q  
Sbjct: 85  RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPS 144
Query: 121 CALTGE 126
           CA +G+
Sbjct: 145 CATSGD 150

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score =  127 bits (318), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 53/126 (42%), Positives = 84/126 (66%)
Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + + V T PT+G NVE V +KN+ F +WD+GG   +R  W  YYT T+ +I V+D  DR+
Sbjct: 24  LGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRD 83
Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           RI   ++EL++++N  ++  A +LI+ANKQD+ ++M P EI   L LT I+ + W++Q  
Sbjct: 84  RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPS 143
Query: 121 CALTGE 126
           CA +G+
Sbjct: 144 CATSGD 149

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score =  126 bits (316), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 53/126 (42%), Positives = 83/126 (65%)
Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + + V T PT+G NVE V +KN+ F +WD+GGQ  +R  W  YYT T+ +I V+D  DR+
Sbjct: 22  LGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD 81
Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           RI   ++EL++++N  +   A +LI+ANKQD+ ++  P EI   L LT I+ + W++Q  
Sbjct: 82  RIDEARQELHRIINDREXRDAIILIFANKQDLPDAXKPHEIQEKLGLTRIRDRNWYVQPS 141
Query: 121 CALTGE 126
           CA +G+
Sbjct: 142 CATSGD 147

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score =  125 bits (314), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 59/126 (46%), Positives = 84/126 (66%)
Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + EVV T PTIG NVE + +KN+   +WDLGGQ S+R  W  YY +T  VI V+DSTD++
Sbjct: 40  IGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKD 99
Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           R+S   +EL+ ML  E+L  AA+L++ANKQD   ++S  E+S  L+L  +K + W I + 
Sbjct: 100 RMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVAS 159
Query: 121 CALTGE 126
            A+ GE
Sbjct: 160 SAIKGE 165

>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171

Iteration: 1
 Score =  110 bits (274), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 58/125 (46%), Positives = 82/125 (65%)
Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + EVV T PTIG NVE V +KN+ F +WDLGG  S+R  W  YY+NT+ VI V+DS DR+
Sbjct: 29  VGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRD 88
Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           RI ++K EL   L  E+L KA ++++ANKQD + + +  E +N L L ++K ++W I   
Sbjct: 89  RIGISKSELVAXLEEEELRKAILVVFANKQDXEQAXTSSEXANSLGLPALKDRKWQIFKT 148
Query: 121 CALTG 125
            A  G
Sbjct: 149 SATKG 153

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score =  109 bits (273), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 79/124 (63%)
Query: 3   EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERI 62
           +V   SPT+G N++ +  +     +WD+GGQ+SLR+ W  Y+ +T+ +I V+DS DR+R+
Sbjct: 42  DVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRM 101
Query: 63  SLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCA 122
              + EL  +L  E L+ A +LI+ANKQD+  ++S   I   L+L SI+   W IQ C A
Sbjct: 102 QDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALELDSIRSHHWRIQGCSA 161
Query: 123 LTGE 126
           +TGE
Sbjct: 162 VTGE 165

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score =  109 bits (272), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 79/124 (63%)
Query: 3   EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERI 62
           +V   SPT+G N++ +  +     +WD+GGQ+SLR+ W  Y+ +T+ +I V+DS DR+R+
Sbjct: 42  DVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRM 101
Query: 63  SLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCA 122
              + EL  +L  E L+ A +LI+ANKQD+  ++S   I   L+L SI+   W IQ C A
Sbjct: 102 QDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSA 161
Query: 123 LTGE 126
           +TGE
Sbjct: 162 VTGE 165

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score =  108 bits (271), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 78/119 (65%)
Query: 8   SPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKE 67
           SPT+G N++ +  +     +WD+GGQ+SLR+ W  Y+ +T+ +I V+DS DR+R+   + 
Sbjct: 45  SPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQR 104
Query: 68  ELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126
           EL  +L  E L+ A +LI+ANKQD+  ++S   I  +L+L SI+   W IQ C A+TGE
Sbjct: 105 ELQSLLVEERLAGATLLIFANKQDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGE 163

>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation Factor-Like 1. Length = 189

Iteration: 1
 Score =  108 bits (271), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 78/113 (69%)
Query: 14  NVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKML 73
           N+E + +KNI F +WDLGGQ  +R  W  Y+++T+ VI V+DSTDR+R+ + K ELY +L
Sbjct: 57  NLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALL 116
Query: 74  NHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126
           + ++L K+ +LI+ANKQD+ ++ S  EI+  L ++SI  + W I    + TG+
Sbjct: 117 DEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGD 169

>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186

Iteration: 1
 Score =  108 bits (271), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 78/124 (62%)
Query: 3   EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERI 62
           +V   SPT+G N++ +  +     +WD+GGQ+SLR+ W  Y+ +T+ +I V+DS DR+R 
Sbjct: 42  DVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRX 101
Query: 63  SLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCA 122
              + EL  +L  E L+ A +LI+ANKQD+  ++S   I   L+L SI+   W IQ C A
Sbjct: 102 QDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALELDSIRSHHWRIQGCSA 161
Query: 123 LTGE 126
           +TGE
Sbjct: 162 VTGE 165

>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169

Iteration: 1
 Score =  106 bits (264), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 50/124 (40%), Positives = 78/124 (62%)
Query: 3   EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERI 62
           +V   SPT+G N++ +  +     +WD+GG +SLR+ W  Y+ +T+ +I V+DS DR+R+
Sbjct: 25  DVDTISPTLGFNIKTLEHRGFKLNIWDVGGLKSLRSYWRNYFESTDGLIWVVDSADRQRM 84
Query: 63  SLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCA 122
              + EL  +L  E L+ A +LI+ANKQD+  ++S   I   L+L SI+   W IQ C A
Sbjct: 85  QDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSA 144
Query: 123 LTGE 126
           +TGE
Sbjct: 145 VTGE 148

>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189

Iteration: 1
 Score =  102 bits (255), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 54/124 (43%), Positives = 80/124 (64%)
Query: 3   EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERI 62
           ++ H +PT G N++ V  +     +WD+GGQ+ +R  W +Y+ NT+ +I VIDS DR+R 
Sbjct: 41  DISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRF 100
Query: 63  SLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCA 122
             T +EL ++L  E LS   VLI+ANKQD+  +    EI+  L+L +I+ + W IQSC A
Sbjct: 101 EETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSA 160
Query: 123 LTGE 126
           LTGE
Sbjct: 161 LTGE 164

>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181

Iteration: 1
 Score =  102 bits (255), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 54/124 (43%), Positives = 80/124 (64%)
Query: 3   EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERI 62
           ++ H +PT G N++ V  +     +WD+GGQ+ +R  W +Y+ NT+ +I VIDS DR+R 
Sbjct: 40  DISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRF 99
Query: 63  SLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCA 122
             T +EL ++L  E LS   VLI+ANKQD+  +    EI+  L+L +I+ + W IQSC A
Sbjct: 100 EETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSA 159
Query: 123 LTGE 126
           LTGE
Sbjct: 160 LTGE 163

>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164

Iteration: 1
 Score =  102 bits (254), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 54/124 (43%), Positives = 80/124 (64%)
Query: 3   EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERI 62
           ++ H +PT G N++ V  +     +WD+GGQ+ +R  W +Y+ NT+ +I VIDS DR+R 
Sbjct: 28  DISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRF 87
Query: 63  SLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCA 122
             T +EL ++L  E LS   VLI+ANKQD+  +    EI+  L+L +I+ + W IQSC A
Sbjct: 88  EETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSA 147
Query: 123 LTGE 126
           LTGE
Sbjct: 148 LTGE 151

>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164

Iteration: 1
 Score = 99.4 bits (246), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 53/124 (42%), Positives = 79/124 (63%)
Query: 3   EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERI 62
           ++ H +PT G N++ V  +     +WD+GG + +R  W +Y+ NT+ +I VIDS DR+R 
Sbjct: 28  DISHITPTQGFNIKSVQSQGFKLNVWDIGGLRKIRPYWRSYFENTDILIYVIDSADRKRF 87
Query: 63  SLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCA 122
             T +EL ++L  E LS   VLI+ANKQD+  +    EI+  L+L +I+ + W IQSC A
Sbjct: 88  EETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSA 147
Query: 123 LTGE 126
           LTGE
Sbjct: 148 LTGE 151

>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190

Iteration: 1
 Score = 99.0 bits (245), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 77/120 (64%), Gaps = 2/120 (1%)
Query: 9   PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEE 68
           PTIG ++E+    ++ F ++D+ GQ   R  W  YY   + +I VIDS+DR R+ + KEE
Sbjct: 53  PTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEE 112
Query: 69  LYKMLNHEDLS--KAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126
           L  +LNH D+   +  +L +ANK D++++++ V++S LL L +IK + WHI +  A+ GE
Sbjct: 113 LDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGE 172

>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 62/112 (55%), Gaps = 7/112 (6%)
Query: 6   HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
           H + T+G NVE      + F ++D+GG +  R  W TYY N + VI V+DS+D  R+ + 
Sbjct: 46  HITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVV 105
Query: 66  KEELYKMLNHEDL-------SKAAVLIYANKQDIKNSMSPVEISNLLDLTSI 110
           K E+  ML HED+        +   L +ANK D   + +  E+  +LDLT++
Sbjct: 106 KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTL 157

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 65/113 (57%), Gaps = 4/113 (3%)
Query: 9   PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEE 68
           PT+G N+ +V   N+   +WD+GGQ   R+ W  Y      ++ +ID+ DRE+I  ++ E
Sbjct: 53  PTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNE 112
Query: 69  LYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC 121
           L+ +L+   L    VL+  NK+D+ N++   ++   ++L++I+ ++     CC
Sbjct: 113 LHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREI----CC 161

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 9   PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEE 68
           PT+G N+ ++   N+   +WD+GGQ   R+ W  Y      ++ ++D+ D+E+I  +K E
Sbjct: 53  PTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNE 112
Query: 69  LYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC 121
           L+ +L+   L    VL+  NK+D+  ++   E+   ++L++I+ ++     CC
Sbjct: 113 LHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREI----CC 161

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 9   PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEE 68
           PT+G N+ ++   N+   +WD+GGQ   R+ W  Y      ++ ++D+ D+E+I  +K E
Sbjct: 62  PTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNE 121
Query: 69  LYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC 121
           L+ +L+   L    VL+  NK+D+  ++   E+   ++L++I+ +    + CC
Sbjct: 122 LHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDR----EICC 170

>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 167

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 49/106 (46%)
Query: 9   PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEE 68
           PT     EE+   NI F  +DLGG    R  W  Y+     ++ ++D+ D ER    + E
Sbjct: 31  PTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVE 90
Query: 69  LYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQ 114
           L  + N  +L     +I  NK D  N++S  E+ + L L +    Q
Sbjct: 91  LDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQ 136

>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex Length = 190

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 49/106 (46%)
Query: 9   PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEE 68
           PT     EE+   NI F  +DLGG    R  W  Y+     ++ ++D+ D ER    + E
Sbjct: 53  PTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVE 112
Query: 69  LYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQ 114
           L  + N  +L     +I  NK D  N++S  E+ + L L +    Q
Sbjct: 113 LDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQ 158

>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp Crystal Structure At Low Mg(2+) Length = 195

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 47/99 (47%)
Query: 9   PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEE 68
           PT+    EE+    + F  +DLGG    R  W  Y      ++ ++D  D ER+  +KEE
Sbjct: 52  PTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEE 111
Query: 69  LYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDL 107
           L  ++  E ++   +LI  NK D   ++S   +  +  L
Sbjct: 112 LDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGL 150

>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex Length = 198

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 47/99 (47%)
Query: 9   PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEE 68
           PT+    EE+    + F  +DLGG    R  W  Y      ++ ++D  D ER+  +KEE
Sbjct: 55  PTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEE 114
Query: 69  LYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDL 107
           L  ++  E ++   +LI  NK D   ++S   +  +  L
Sbjct: 115 LDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGL 153

>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight Into The Coat-controlled Gtp Hydrolysis In The Disassembly Of Cop Ii Length = 189

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 47/99 (47%)
Query: 9   PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEE 68
           PT+    EE+    + F  +DLGG    R  W  Y      ++ ++D  D ER+  +KEE
Sbjct: 46  PTLHPTSEELTIAGMTFTTFDLGGGIQARRVWKNYLPAINGIVFLVDCADHERLLESKEE 105
Query: 69  LYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDL 107
           L  ++  E ++   +LI  NK D   ++S   +  +  L
Sbjct: 106 LDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGL 144

>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp Length = 208

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 48/99 (48%)
Query: 9   PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEE 68
           PT+    EE+    + F  +DLGG +  R  W  Y      ++ ++D  D  R+  +K E
Sbjct: 65  PTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVE 124
Query: 69  LYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDL 107
           L  ++  E +S   +LI  NK D  +++S  ++  +  L
Sbjct: 125 LNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGL 163

>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To Alf4 And Gdp Length = 353

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 13/106 (12%)
Query: 9   PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEE 68
           PT G       +K++HF M+D+GGQ+S R  W   +     +I  +  +D + +    EE
Sbjct: 179 PTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 238
Query: 69  LYKM----------LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
           + +M           N++  +  +++++ NK+D+   K   SP+ I
Sbjct: 239 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 284

>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A Complex With Galpha(13):galpha(i1) Chimera Length = 340

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/106 (23%), Positives = 53/106 (50%), Gaps = 13/106 (12%)
Query: 9   PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEE 68
           PT G +     +K++HF M+D+GGQ+S R  W   +     +I  +  +D +++ +   +
Sbjct: 166 PTKGIHETHFTFKDLHFKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQVLMEDRQ 225
Query: 69  LYKM----------LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
             +M           N++  +  +++++ NK+D+   K   SP+ I
Sbjct: 226 TNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 271

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 21  KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK 80
           K +   +WD  GQ+  R   + YY     +ILV D TD ER     ++ +K +N     +
Sbjct: 54  KKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTD-ERTFTNIKQWFKTVNEHANDE 112
Query: 81  AAVLIYANKQDIK 93
           A +L+  NK D++
Sbjct: 113 AQLLLVGNKSDME 125

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 21  KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK 80
           K +   +WD  GQ+  R   + YY     +ILV D TD ER     ++ +K +N     +
Sbjct: 50  KKVKLQLWDTAGQERFRTITTAYYRGAXGIILVYDVTD-ERTFTNIKQWFKTVNEHANDE 108
Query: 81  AAVLIYANKQD 91
           A +L+  NK D
Sbjct: 109 AQLLLVGNKSD 119

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 21  KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK 80
           K +   +WD  GQ+  R   + YY     +ILV D TD ER     ++ +K +N     +
Sbjct: 67  KKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTD-ERTFTNIKQWFKTVNEHANDE 125
Query: 81  AAVLIYANKQDIK 93
           A +L+  NK D++
Sbjct: 126 AQLLLVGNKSDME 138

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 8   SPTIGSNV--EEVIWKN-IH-FIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERIS 63
           +PTIG++   + V ++N +H F++WD  GQ+  RA    YY  +   I+V D T  E  S
Sbjct: 35  NPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFS 94
Query: 64  LTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94
             K  + ++  H   S   V I  NK D+ +
Sbjct: 95  TLKNWVRELRQHGPPS-IVVAIAGNKCDLTD 124

>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double Mutant I56cQ333C Length = 354

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 20  WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
           +K++HF M+D+GGQ+S R  W   +     +I  +  +D + +    EE+ +M       
Sbjct: 191 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 250
Query: 73  ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
               N++  +  +++++ NK+D+   K   SP+ I
Sbjct: 251 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 285

>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide Provides Insight Into Guanine Nucleotide Exchange Length = 329

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 20  WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
           +K++HF M+D+GGQ+S R  W   +     +I  +  +D + +    EE+ +M       
Sbjct: 166 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 225
Query: 73  ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
               N++  +  +++++ NK+D+   K   SP+ I
Sbjct: 226 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 260

>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs1 And Activated Gi Alpha 1 Length = 323

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 20  WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
           +K++HF M+D+GGQ+S R  W   +     +I  +  +D + +    EE+ +M       
Sbjct: 160 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 219
Query: 73  ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
               N++  +  +++++ NK+D+   K   SP+ I
Sbjct: 220 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 254

>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX Length = 330

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 20  WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
           +K++HF M+D+GGQ+S R  W   +     +I  +  +D + +    EE+ +M       
Sbjct: 167 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 226
Query: 73  ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
               N++  +  +++++ NK+D+   K   SP+ I
Sbjct: 227 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 261

>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed Helical Peptide Derived From The Goloco Motif Of Rgs14 Length = 327

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 20  WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
           +K++HF M+D+GGQ+S R  W   +     +I  +  +D + +    EE+ +M       
Sbjct: 164 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 223
Query: 73  ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
               N++  +  +++++ NK+D+   K   SP+ I
Sbjct: 224 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 258

>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity For The Rgs14 Goloco Motif. Length = 328

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 20  WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
           +K++HF M+D+GGQ+S R  W   +     +I  +  +D + +    EE+ +M       
Sbjct: 165 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 224
Query: 73  ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
               N++  +  +++++ NK+D+   K   SP+ I
Sbjct: 225 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 259

>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound To Alf4 And Gdp Length = 356

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 20  WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
           +K++HF M+D+GGQ+S R  W   +     +I  +  +D + +    EE+ +M       
Sbjct: 193 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 252
Query: 73  ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
               N++  +  +++++ NK+D+   K   SP+ I
Sbjct: 253 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 287

>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1 Length = 353

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 20  WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
           +K++HF M+D+GGQ+S R  W   +     +I  +  +D + +    EE+ +M       
Sbjct: 190 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 249
Query: 73  ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
               N++  +  +++++ NK+D+   K   SP+ I
Sbjct: 250 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 284

>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The Activated State: G42r Bound To Rgs14 Goloco Length = 328

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 20  WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
           +K++HF M+D+GGQ+S R  W   +     +I  +  +D + +    EE+ +M       
Sbjct: 165 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 224
Query: 73  ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
               N++  +  +++++ NK+D+   K   SP+ I
Sbjct: 225 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 259

>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The Activated State Length = 325

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 20  WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
           +K++HF M+D+GGQ+S R  W   +     +I  +  +D + +    EE+ +M       
Sbjct: 162 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 221
Query: 73  ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
               N++  +  +++++ NK+D+   K   SP+ I
Sbjct: 222 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 256

>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs16 And Activated Gi Alpha 1 Length = 324

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 20  WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
           +K++HF M+D+GGQ+S R  W   +     +I  +  +D + +    EE+ +M       
Sbjct: 161 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 220
Query: 73  ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
               N++  +  +++++ NK+D+   K   SP+ I
Sbjct: 221 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 255

>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco Motif Of Rgs14 Length = 325

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 20  WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
           +K++HF M+D+GGQ+S R  W   +     +I  +  +D + +    EE+ +M       
Sbjct: 162 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 221
Query: 73  ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
               N++  +  +++++ NK+D+   K   SP+ I
Sbjct: 222 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 256

>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp Bound Length = 353

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 20  WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
           +K++HF M+D+GGQ+S R  W   +     +I  +  +D + +    EE+ +M       
Sbjct: 190 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 249
Query: 73  ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
               N++  +  +++++ NK+D+   K   SP+ I
Sbjct: 250 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 284

>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit Length = 315

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 20  WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
           +K++HF M+D+GGQ+S R  W   +     +I  +  +D + +    EE+ +M       
Sbjct: 160 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 219
Query: 73  ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
               N++  +  +++++ NK+D+   K   SP+ I
Sbjct: 220 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 254

>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide- State-selective Peptide: Minimal Determinants For Recognizing The Active Form Of A G Protein Alpha Subunit Length = 313

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 20  WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
           +K++HF M+D+GGQ+S R  W   +     +I  +  +D + +    EE+ +M       
Sbjct: 159 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 218
Query: 73  ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
               N++  +  +++++ NK+D+   K   SP+ I
Sbjct: 219 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 253

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 21  KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK 80
           K +   +WD  GQ+  R   + YY     +ILV D TD ER     ++ +K +N     +
Sbjct: 50  KKVKLQIWDTAGQERFRTITTAYYRGAXGIILVYDITD-ERTFTNIKQWFKTVNEHANDE 108
Query: 81  AAVLIYANKQD 91
           A +L+  NK D
Sbjct: 109 AQLLLVGNKSD 119

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 21  KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK 80
           K +   +WD  GQ+  R   + YY     +ILV D TD ER     ++ +K +N     +
Sbjct: 50  KKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITD-ERTFTNIKQWFKTVNEHANDE 108
Query: 81  AAVLIYANKQDIK 93
           A +L+  NK D++
Sbjct: 109 AQLLLVGNKSDME 121

>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1 Length = 354

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 13/95 (13%)
Query: 20  WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
           +K++HF M+D+ GQ+S R  W   +     +I  +  +D + +    EE+ +M       
Sbjct: 191 FKDLHFKMFDVDGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 250
Query: 73  ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
               N++  +  +++++ NK+D+   K   SP+ I
Sbjct: 251 DSICNNKCFTDTSIILFLNKKDLFEEKIKKSPLTI 285

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 21  KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK---EELYKMLNHED 77
           K ++  +WD  GQ+   A    YY ++   ILV D TD +     K   +EL KML +E 
Sbjct: 67  KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE- 125
Query: 78  LSKAAVLIYANKQDIK 93
                + I  NK D++
Sbjct: 126 ---ICLCIVGNKIDLE 138

>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs10 And Activated Gi Alpha 3 Length = 323

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 50/95 (52%), Gaps = 13/95 (13%)
Query: 20  WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
           +K+++F M+D+GGQ+S R  W   +     +I  +  +D + +    EE+ +M       
Sbjct: 160 FKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 219
Query: 73  ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
               N++  ++ +++++ NK+D+   K   SP+ I
Sbjct: 220 DSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTI 254

>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX Length = 330

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 50/95 (52%), Gaps = 13/95 (13%)
Query: 20  WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
           +K+++F M+D+GGQ+S R  W   +     +I  +  +D + +    EE+ +M       
Sbjct: 167 FKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 226
Query: 73  ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
               N++  ++ +++++ NK+D+   K   SP+ I
Sbjct: 227 DSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTI 261

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 21  KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK---EELYKMLNHED 77
           K ++  +WD  GQ+   A    YY ++   ILV D TD +     K   +EL KML +E 
Sbjct: 53  KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE- 111
Query: 78  LSKAAVLIYANKQDIK 93
                + I  NK D++
Sbjct: 112 ---ICLCIVGNKIDLE 124

>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX Length = 330

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 50/95 (52%), Gaps = 13/95 (13%)
Query: 20  WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
           +K+++F M+D+GGQ+S R  W   +     +I  +  +D + +    EE+ +M       
Sbjct: 167 FKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 226
Query: 73  ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
               N++  ++ +++++ NK+D+   K   SP+ I
Sbjct: 227 DSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTI 261

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 21  KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK---EELYKMLNHED 77
           K ++  +WD  GQ+   A    YY ++   ILV D TD +     K   +EL KML +E 
Sbjct: 53  KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE- 111
Query: 78  LSKAAVLIYANKQDIK 93
                + I  NK D++
Sbjct: 112 ---ICLCIVGNKIDLE 124

>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs8 And Activated Gi Alpha 3 Length = 350

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 50/95 (52%), Gaps = 13/95 (13%)
Query: 20  WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
           +K+++F M+D+GGQ+S R  W   +     +I  +  +D + +    EE+ +M       
Sbjct: 190 FKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 249
Query: 73  ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
               N++  ++ +++++ NK+D+   K   SP+ I
Sbjct: 250 DSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTI 284

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 9   PTIGSNVE----EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISL 64
            TIG + +    E+  K +   +WD  GQ+  R   S+YY  +  +I+V D TD+E  + 
Sbjct: 39  STIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNG 98
Query: 65  TKEELYKMLNHEDLSKAAVLIYANKQDIKN 94
            K  L + ++    S    L+  NK D+K+
Sbjct: 99  VKMWL-QEIDRYATSTVLKLLVGNKCDLKD 127

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 9   PTIGSNVE----EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISL 64
            TIG + +    E+  K +   +WD  GQ+  R   S+YY  +  +I+V D TD+E  + 
Sbjct: 39  STIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNG 98
Query: 65  TKEELYKMLNHEDLSKAAVLIYANKQDIKN 94
            K  L + ++    S    L+  NK D+K+
Sbjct: 99  VKMWL-QEIDRYATSTVLKLLVGNKCDLKD 127

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 13/94 (13%)
Query: 17  EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK---------- 66
           E+  K I   +WD  GQ+  R   S+YY     +I+V D TD+E  +  K          
Sbjct: 59  ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA 118
Query: 67  -EELYKML--NHEDLSKAAVLIYANKQDIKNSMS 97
            E + K+L  N  DL+   V+ Y   ++  +S+ 
Sbjct: 119 SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG 152

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 10  TIGSNVE----EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
           TIG + +    E+  K +   +WD  GQ+  R   S+YY  +  +I+V D TD+E  +  
Sbjct: 53  TIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGV 112
Query: 66  KEELYKMLNHEDLSKAAVLIYANKQDIKN 94
           K  L + ++    S    L+  NK D+K+
Sbjct: 113 KMWL-QEIDRYATSTVLKLLVGNKCDLKD 140

>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1 Length = 354

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 13/95 (13%)
Query: 20  WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
           +K++HF M+D+ GQ+S R  W   +     +I  +  +D + +    EE+ +M       
Sbjct: 191 FKDLHFKMFDVAGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 250
Query: 73  ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
               N++  +  +++++ NK+D+   K   SP+ I
Sbjct: 251 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 285

>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 353

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 13/95 (13%)
Query: 20  WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
           +K++HF M+D+G Q+S R  W   +     +I  +  +D + +    EE+ +M       
Sbjct: 190 FKDLHFKMFDVGAQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 249
Query: 73  ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
               N++  +  +++++ NK+D+   K   SP+ I
Sbjct: 250 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 284

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 13/94 (13%)
Query: 17  EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK---------- 66
           E+  K I   +WD  GQ+  R   S+YY     +I+V D TD+E  +  K          
Sbjct: 76  ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA 135
Query: 67  -EELYKML--NHEDLSKAAVLIYANKQDIKNSMS 97
            E + K+L  N  DL+   V+ Y   ++  +S+ 
Sbjct: 136 SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG 169

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 17/105 (16%)
Query: 10  TIGSNVE----EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
           TIG + +    E+  K I   +WD  GQ+  R   S+YY     +I+V D TD+E  +  
Sbjct: 48  TIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV 107
Query: 66  K-----------EELYKML--NHEDLSKAAVLIYANKQDIKNSMS 97
           K           E + K+L  N  DL+   V+ Y   ++  +S+ 
Sbjct: 108 KQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG 152

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 17/105 (16%)
Query: 10  TIGSNVE----EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
           TIG + +    E+  K I   +WD  GQ+  R   S+YY     +I+V D TD+E  +  
Sbjct: 57  TIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV 116
Query: 66  K-----------EELYKML--NHEDLSKAAVLIYANKQDIKNSMS 97
           K           E + K+L  N  DL+   V+ Y   ++  +S+ 
Sbjct: 117 KQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG 161

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 8   SPTIGSNV--EEVIWKN-IH-FIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERIS 63
           +PTIG++   + V ++N +H F++WD  G +  RA    YY  +   I+V D T  E  S
Sbjct: 36  NPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFS 95
Query: 64  LTKEELYKMLNHEDLSKAAVLIYANKQDIKN 94
             K  + ++  H   S   V I  NK D+ +
Sbjct: 96  TLKNWVRELRQHGPPS-IVVAIAGNKCDLTD 125

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 17/105 (16%)
Query: 10  TIGSNVE----EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
           TIG + +    E+  K I   +WD  GQ+  R   S+YY     +I+V D TD+E  +  
Sbjct: 38  TIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV 97
Query: 66  K-----------EELYKML--NHEDLSKAAVLIYANKQDIKNSMS 97
           K           E + K+L  N  DL+   V+ Y   ++  +S+ 
Sbjct: 98  KQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG 142

>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)- (GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)] Length = 325

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 20  WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
           +K+++F M+D+GGQ+S R  W   +     +I  +  +D + +    EE+ +M       
Sbjct: 162 FKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 221
Query: 73  ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
               N++  +  +++++ NK+D+   K   SP+ I
Sbjct: 222 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 256

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 17/106 (16%)
Query: 9   PTIGSNVE----EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISL 64
            TIG + +    E+  K I   +WD  GQ+  R   S+YY     +I+V D TD+E  + 
Sbjct: 30  STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 89
Query: 65  TK-----------EELYKML--NHEDLSKAAVLIYANKQDIKNSMS 97
            K           E + K+L  N  DL+   V+ Y   ++  +S+ 
Sbjct: 90  VKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG 135

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 17/105 (16%)
Query: 10  TIGSNVE----EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
           TIG + +    E+  K I   +WD  GQ+  R   S+YY     +I+V D TD+E  +  
Sbjct: 38  TIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV 97
Query: 66  K-----------EELYKML--NHEDLSKAAVLIYANKQDIKNSMS 97
           K           E + K+L  N  DL+   V+ Y   ++  +S+ 
Sbjct: 98  KQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG 142

>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide Insights Into The Mechanism Of G Protein Activation. Length = 356

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 49/95 (51%), Gaps = 13/95 (13%)
Query: 20  WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
           +K+++F M+D+GGQ+S R  W   +     +I  +  +D + +    EE+ +M       
Sbjct: 193 FKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMHLF 252
Query: 73  ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
               N++  +  +++++ NK+D+   K   SP+ I
Sbjct: 253 NSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 287

>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The Mechanism Of Gtp Hydrolysis Length = 353

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 13/95 (13%)
Query: 20  WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
           +K++HF M+D+GG +S R  W   +     +I  +  +D + +    EE+ +M       
Sbjct: 190 FKDLHFKMFDVGGLRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 249
Query: 73  ---LNHEDLSKAAVLIYANKQDI---KNSMSPVEI 101
               N++  +  +++++ NK+D+   K   SP+ I
Sbjct: 250 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 284

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 10  TIGSNVE----EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
           TIG + +    E+  K I   +WD  GQ+  R   S+YY     +I+V D TD+E  +  
Sbjct: 41  TIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANV 100
Query: 66  KEELYKMLNH--EDLSKAAVLIYANKQDI 92
           K+ L ++  +  E+++K   L+  NK D+
Sbjct: 101 KQWLQEIDRYASENVNK---LLVGNKSDL 126

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 10  TIGSNVE----EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
           TIG + +    E+  K I   +WD  GQ+  R   S+YY     +I+V D TD+E  +  
Sbjct: 41  TIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANV 100
Query: 66  KEELYKMLNH--EDLSKAAVLIYANKQDI 92
           K+ L ++  +  E+++K   L+  NK D+
Sbjct: 101 KQWLQEIDRYASENVNK---LLVGNKSDL 126

>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha Complexed With Gtp Gamma S Length = 324

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/83 (21%), Positives = 43/83 (51%), Gaps = 10/83 (12%)
Query: 20  WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM------- 72
           +K+++F M+D+GGQ+S R  W   +     +I +   +  + + +  +E+ +M       
Sbjct: 161 FKDLNFRMFDVGGQRSERKKWIHCFEGVTCIIFIAALSAYDMVLVEDDEVNRMHESLHLF 220
Query: 73  ---LNHEDLSKAAVLIYANKQDI 92
               NH   +  +++++ NK+D+
Sbjct: 221 NSICNHRYFATTSIVLFLNKKDV 243

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 11  IGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELY 70
            G+ +  +  K I   +WD  GQ+S R+   +YY      +LV D T RE  +     L 
Sbjct: 58  FGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLE 117
Query: 71  KMLNHEDLSKAAVLIYANKQDIKN 94
               H   S   +++  NK D+++
Sbjct: 118 DARQHSS-SNMVIMLIGNKSDLES 140

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	126
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	8e-72
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	1e-71
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	2e-71
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	2e-71
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	3e-71
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	7e-71
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	1e-70
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	1e-70
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	2e-70
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	7e-70
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	1e-68
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	5e-68
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	1e-67
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	3e-66
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	1e-64
2fh5_B	214	SR-beta, signal recognition particle receptor beta	2e-48
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	1e-38
2ged_A	193	SR-beta, signal recognition particle receptor beta	7e-38
1nrj_B	218	SR-beta, signal recognition particle receptor beta	7e-38
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	7e-29
3llu_A	196	RAS-related GTP-binding protein C; structural geno	1e-23
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	2e-23
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	2e-14
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	1e-08
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	3e-06
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	4e-06
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	4e-06
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	2e-05
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	3e-05
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	6e-05
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	3e-04
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	5e-04
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	6e-04

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score =  211 bits (540), Expect = 8e-72
 Identities = 55/126 (43%), Positives = 87/126 (69%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + +VV T PT+G N+E + +KNI F +WDLGGQ  +R  W  Y+++T+ VI V+DSTDR+
Sbjct: 44  LGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRD 103

Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           R+ + K ELY +L+ ++L K+ +LI+ANKQD+ ++ S  EI+  L ++SI  + W I   
Sbjct: 104 RMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKS 163

Query: 121 CALTGE 126
            + TG+
Sbjct: 164 SSKTGD 169

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score =  210 bits (537), Expect = 1e-71
 Identities = 60/126 (47%), Positives = 86/126 (68%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + EVV T PTIG NVE V +KN+ F +WDLGG  S+R  W  YY+NT+ VI V+DS DR+
Sbjct: 29  VGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRD 88

Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           RI ++K EL  ML  E+L KA ++++ANKQD++ +M+  E++N L L ++K ++W I   
Sbjct: 89  RIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKT 148

Query: 121 CALTGE 126
            A  G 
Sbjct: 149 SATKGT 154

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score =  210 bits (537), Expect = 2e-71
 Identities = 93/126 (73%), Positives = 110/126 (87%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           MNEVVHTSPTIGSNVEE++  N  F+MWD+GGQ+SLR++W+TYYTNTEFVI+V+DSTDRE
Sbjct: 43  MNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 102

Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           RIS+T+EELYKML HEDL KA +LI+ANKQD+K  M+  EIS  L LTSIK  QWHIQ+C
Sbjct: 103 RISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQAC 162

Query: 121 CALTGE 126
           CALTGE
Sbjct: 163 CALTGE 168

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score =  210 bits (537), Expect = 2e-71
 Identities = 51/126 (40%), Positives = 79/126 (62%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
             +V   SPT+G N++ +  +     +WD+GGQ+SLR+ W  Y+ +T+ +I V+DS DR+
Sbjct: 40  GEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQ 99

Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           R+   + EL  +L  E L+ A +LI+ANKQD+  ++S   I   L+L SI+   W IQ C
Sbjct: 100 RMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGC 159

Query: 121 CALTGE 126
            A+TGE
Sbjct: 160 SAVTGE 165

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score =  209 bits (534), Expect = 3e-71
 Identities = 59/126 (46%), Positives = 90/126 (71%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + E+V T PTIG NVE V +KNI F +WD+GGQ  +R  W  Y+ NT+ +I V+DS DRE
Sbjct: 22  LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE 81

Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           R++  +EEL +ML  ++L  A +L++ANKQD+ N+M+  EI++ L L S++ + W+IQ+ 
Sbjct: 82  RVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQAT 141

Query: 121 CALTGE 126
           CA +G+
Sbjct: 142 CATSGD 147

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score =  213 bits (545), Expect = 7e-71
 Identities = 59/126 (46%), Positives = 90/126 (71%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + E+V T PTIG NVE V +KNI F +WD+GGQ  +R  W  Y+ NT+ +I V+DS DRE
Sbjct: 187 LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE 246

Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           R++  +EEL +ML  ++L  A +L++ANKQD+ N+M+  EI++ L L S++ + W+IQ+ 
Sbjct: 247 RVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQAT 306

Query: 121 CALTGE 126
           CA +G+
Sbjct: 307 CATSGD 312

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score =  208 bits (532), Expect = 1e-70
 Identities = 54/126 (42%), Positives = 80/126 (63%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
             ++ H +PT G N++ V  +     +WD+GGQ+ +R  W +Y+ NT+ +I VIDS DR+
Sbjct: 38  SEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRK 97

Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           R   T +EL ++L  E LS   VLI+ANKQD+  +    EI+  L+L +I+ + W IQSC
Sbjct: 98  RFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSC 157

Query: 121 CALTGE 126
            ALTGE
Sbjct: 158 SALTGE 163

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score =  208 bits (532), Expect = 1e-70
 Identities = 93/126 (73%), Positives = 110/126 (87%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           MNEVVHTSPTIGSNVEE++  N  F+MWD+GGQ+SLR++W+TYYTNTEFVI+V+DSTDRE
Sbjct: 38  MNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 97

Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           RIS+T+EELYKML HEDL KA +LI+ANKQD+K  M+  EIS  L LTSIK  QWHIQ+C
Sbjct: 98  RISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQAC 157

Query: 121 CALTGE 126
           CALTGE
Sbjct: 158 CALTGE 163

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score =  207 bits (530), Expect = 2e-70
 Identities = 59/126 (46%), Positives = 84/126 (66%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + EVV T PTIG NVE + +KN+   +WDLGGQ S+R  W  YY +T  VI V+DSTD++
Sbjct: 40  IGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKD 99

Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           R+S   +EL+ ML  E+L  AA+L++ANKQD   ++S  E+S  L+L  +K + W I + 
Sbjct: 100 RMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVAS 159

Query: 121 CALTGE 126
            A+ GE
Sbjct: 160 SAIKGE 165

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score =  203 bits (520), Expect = 1e-68
 Identities = 31/127 (24%), Positives = 65/127 (51%), Gaps = 1/127 (0%)

Query: 1   MNEV-VHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR 59
             +      PT+G N+ ++   N+   +WD+GGQ   R+ W  Y      ++ ++D+ D+
Sbjct: 44  SGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQ 103

Query: 60  ERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQS 119
           E+I  +K EL+ +L+   L    VL+  NK+D+  ++   E+   ++L++I+ ++    S
Sbjct: 104 EKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYS 163

Query: 120 CCALTGE 126
                 +
Sbjct: 164 ISCKEKD 170

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score =  202 bits (515), Expect = 5e-68
 Identities = 56/126 (44%), Positives = 85/126 (67%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           + E+V T PTIG NVE V +KNI F +WD+GGQ  +R  W  Y+ NT+ +I V+DS DRE
Sbjct: 51  LGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE 110

Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
           R+  + +EL KML  ++L  A +L++ANKQD+ N+M   E+++ L L  ++ + W++Q+ 
Sbjct: 111 RVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQAT 170

Query: 121 CALTGE 126
           CA  G 
Sbjct: 171 CATQGT 176

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score =  201 bits (513), Expect = 1e-67
 Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 7/133 (5%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
            + +    PT     EE+   NI F  +DLGG    R  W  Y+     ++ ++D+ D E
Sbjct: 45  NDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPE 104

Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQ------ 114
           R    + EL  + N  +L     +I  NK D  N++S  E+ + L L +    Q      
Sbjct: 105 RFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQR 164

Query: 115 -WHIQSCCALTGE 126
              +  C  +   
Sbjct: 165 PVEVFMCSVVMRN 177

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score =  197 bits (504), Expect = 3e-66
 Identities = 47/126 (37%), Positives = 79/126 (62%), Gaps = 2/126 (1%)

Query: 3   EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERI 62
           +  +  PTIG ++E+    ++ F ++D+ GQ   R  W  YY   + +I VIDS+DR R+
Sbjct: 47  QSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRM 106

Query: 63  SLTKEELYKMLNHEDL--SKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
            + KEEL  +LNH D+   +  +L +ANK D++++++ V++S LL L +IK + WHI + 
Sbjct: 107 VVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICAS 166

Query: 121 CALTGE 126
            A+ GE
Sbjct: 167 DAIKGE 172

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score =  194 bits (494), Expect = 1e-64
 Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 12/138 (8%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
            + +    PT+    EE+    + F  +DLGG    R  W  Y      ++ ++D  D E
Sbjct: 47  DDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHE 106

Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLL------------DLT 108
           R+  +KEEL  ++  E ++   +LI  NK D   ++S   +  +              L 
Sbjct: 107 RLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLK 166

Query: 109 SIKKQQWHIQSCCALTGE 126
            +  +   +  C  L  +
Sbjct: 167 ELNARPLEVFMCSVLKRQ 184

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score =  152 bits (387), Expect = 2e-48
 Identities = 30/133 (22%), Positives = 50/133 (37%), Gaps = 7/133 (5%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIH---FIMWDLGGQQSLRA-AWSTYYTNTEFVILVIDS 56
             +   T  +I  +       N       + DL G +SLR      + ++   V+ V+DS
Sbjct: 29  TGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDS 88

Query: 57  TDRER-ISLTKEELYKMLNHEDLSKAA--VLIYANKQDIKNSMSPVEISNLLDLTSIKKQ 113
              +R +    E LY++L      K +  +LI  NKQDI  + S   I   L+      +
Sbjct: 89  AAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLR 148

Query: 114 QWHIQSCCALTGE 126
                +   L   
Sbjct: 149 VTRSAAPSTLDSS 161

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score =  127 bits (322), Expect = 1e-38
 Identities = 21/136 (15%), Positives = 49/136 (36%), Gaps = 15/136 (11%)

Query: 1   MNEVVHTSPTIGSN-----VEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVID 55
           ++       T+  +     + EV      F ++ + GQ    A+        + ++ V D
Sbjct: 47  VSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVAD 106

Query: 56  STDRERISLTKEELYKMLN-----HEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSI 110
           S    R+    E +  M          L    ++I  NK+D+ +++    +  ++D    
Sbjct: 107 SAP-NRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEG- 164

Query: 111 KKQQWHIQSCCALTGE 126
              ++ +    A  G+
Sbjct: 165 ---KFPVLEAVATEGK 177

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score =  125 bits (316), Expect = 7e-38
 Identities = 24/124 (19%), Positives = 51/124 (41%), Gaps = 11/124 (8%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEF----VILVIDS 56
            + V  T  +    +    +      + D  G   LR   S Y          +I ++DS
Sbjct: 70  TDSVRPTVVSQE-PLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDS 128

Query: 57  -TDRERISLTKEELYKMLNHEDLSKAA---VLIYANKQDIKNSMSPVEISNLLD--LTSI 110
             D ++++ T E L  +L+  + S      +LI  NK ++  +  P +I + L+  +  +
Sbjct: 129 TVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKV 188

Query: 111 KKQQ 114
            +++
Sbjct: 189 IERR 192

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score =  126 bits (318), Expect = 7e-38
 Identities = 25/136 (18%), Positives = 53/136 (38%), Gaps = 12/136 (8%)

Query: 2   NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEF----VILVIDS- 56
           + V  T  +    +    +      + D  G   LR   S Y          +I ++DS 
Sbjct: 35  DSVRPTVVSQE-PLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDST 93

Query: 57  TDRERISLTKEELYKMLNHEDLSKAA---VLIYANKQDIKNSMSPVEISNLL--DLTSIK 111
            D ++++ T E L  +L+  + S      +LI  NK ++  +  P +I + L  ++  + 
Sbjct: 94  VDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVI 153

Query: 112 K-QQWHIQSCCALTGE 126
           + ++  +        E
Sbjct: 154 ERRKKSLNEVERKINE 169

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} Length = 227

 Score =  103 bits (258), Expect = 7e-29
 Identities = 15/103 (14%), Positives = 32/103 (31%), Gaps = 5/103 (4%)

Query: 28  WDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKE--ELYKMLNHE--DLSKAAV 83
              G + S+           +  I V ++   +R     E   +  M +       +  +
Sbjct: 107 DQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLL 166

Query: 84  LIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126
           ++    Q     M    +++ L L  +    W +Q   A T  
Sbjct: 167 VLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLT 208

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 89.3 bits (221), Expect = 1e-23
 Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 4/95 (4%)

Query: 1   MNEVVHTSPTIGSNVEEVIWK-NIHFIMWDLGGQQSLRAAWS---TYYTNTEFVILVIDS 56
            NE +    T     +++     ++F +WD  GQ             +  T  +I VID+
Sbjct: 46  PNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDA 105

Query: 57  TDRERISLTKEELYKMLNHEDLSKAAVLIYANKQD 91
            D    +LT+  +     ++        ++ +K D
Sbjct: 106 QDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVD 140

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 91.3 bits (226), Expect = 2e-23
 Identities = 15/102 (14%), Positives = 32/102 (31%), Gaps = 5/102 (4%)

Query: 29  DLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKE--ELYKMLNHED--LSKAAVL 84
             G + S+           +  I V ++   +R     E   +  M +       +  ++
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLV 252

Query: 85  IYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126
           +    Q     M    +++ L L  +    W +Q   A T  
Sbjct: 253 LSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLT 293

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 66.9 bits (163), Expect = 2e-14
 Identities = 19/134 (14%), Positives = 39/134 (29%), Gaps = 9/134 (6%)

Query: 2   NEVVHTSPTIGSNVEEVI-WKNIHFIMWDLGGQQS-----LRAAWSTYYTNTEFVILVID 55
            +      TI      +    N+   +WD GGQ               +   + +I V D
Sbjct: 30  FDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFD 89

Query: 56  STDRERISLTKEELYKMLNHEDLSK-AAVLIYANKQDIKNSMSPVEISNLL--DLTSIKK 112
               E +   +     +      S  A + +  +K D+       E+  ++  +L+    
Sbjct: 90  VESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSS 149

Query: 113 QQWHIQSCCALTGE 126
           +          T  
Sbjct: 150 EFGFPNLIGFPTSI 163

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 50.4 bits (120), Expect = 1e-08
 Identities = 14/93 (15%), Positives = 34/93 (36%), Gaps = 4/93 (4%)

Query: 2   NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWST---YYTNTEFVILVIDSTD 58
            + ++   T   ++E      I   + +L GQ +           + +   ++ VIDS D
Sbjct: 26  LDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQD 84

Query: 59  RERISLTKEELYKMLNHEDLSKAAVLIYANKQD 91
               ++T   +     ++      + +  +K D
Sbjct: 85  EYINAITNLAMIIEYAYKVNPSINIEVLIHKVD 117

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* Length = 402

 Score = 43.6 bits (102), Expect = 3e-06
 Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 10/94 (10%)

Query: 9   PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEE 68
            T G    +     ++F M+D+GGQ+  R  W   + +   +I V+ S+    +     +
Sbjct: 203 LTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQ 262

Query: 69  LYKM----------LNHEDLSKAAVLIYANKQDI 92
             ++           N+  L   +V+++ NKQD+
Sbjct: 263 TNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... Length = 353

 Score = 43.5 bits (102), Expect = 4e-06
 Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 10/96 (10%)

Query: 7   TSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK 66
              T G       +K++HF M+D+GGQ+S R  W   +     +I  +  +D + +    
Sbjct: 177 RVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAED 236

Query: 67  EELYKML----------NHEDLSKAAVLIYANKQDI 92
           EE+ +M           N++  +  +++++ NK+D+
Sbjct: 237 EEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* Length = 327

 Score = 43.1 bits (101), Expect = 4e-06
 Identities = 18/96 (18%), Positives = 45/96 (46%), Gaps = 10/96 (10%)

Query: 7   TSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK 66
             PT G        +++ F M D+GGQ+S R  W   + N   ++ ++  ++ +++ +  
Sbjct: 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVES 210

Query: 67  EELYKM----------LNHEDLSKAAVLIYANKQDI 92
           +   +M          + +     ++V+++ NK+D+
Sbjct: 211 DNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 246

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} Length = 354

 Score = 41.2 bits (96), Expect = 2e-05
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 13  SNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM 72
           S V E       + ++D+GGQ++ R  W   +     VI     ++ ++     E+  +M
Sbjct: 173 SPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRM 232

Query: 73  ----------LNHEDLSKAAVLIYANKQDI 92
                     L      K + +++ NK DI
Sbjct: 233 METKELFDWVLKQPCFEKTSFMLFLNKFDI 262

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* Length = 362

 Score = 40.9 bits (95), Expect = 3e-05
 Identities = 20/96 (20%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 7   TSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK 66
             PT G +  +   KN+ F M D+GGQ+S R  W   + +   ++ ++ S++ +++ +  
Sbjct: 185 RRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMED 244

Query: 67  EELYKM----------LNHEDLSKAAVLIYANKQDI 92
            +  ++          +N+   S  +++++ NK D+
Sbjct: 245 RQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 280

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 40.0 bits (93), Expect = 6e-05
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 5/92 (5%)

Query: 6   HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
             +P I     +   K   F  WD GGQ+ + A+   + T +   +L++DS         
Sbjct: 81  KQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNK--- 137

Query: 66  KEELYKMLNHEDLSKAAVLIYANKQDIKNSMS 97
                + +      K+ V++  NK D   S +
Sbjct: 138 -HYWLRHIEKYG-GKSPVIVVMNKIDENPSYN 167

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 22/98 (22%)

Query: 9   PTIGSNVE------EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERI 62
            T+G  VE            I F +WD  GQ+        YY   +  I++ D T R   
Sbjct: 46  ATLG--VEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVT- 102

Query: 63  SLTKEELYKMLN--HEDLSKAA----VLIYANKQDIKN 94
                  YK +   H DL +      +++  NK DIK+
Sbjct: 103 -------YKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 133

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 37.0 bits (86), Expect = 5e-04
 Identities = 9/66 (13%), Positives = 26/66 (39%), Gaps = 7/66 (10%)

Query: 2  NEVVHTSPTIGS-------NVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVI 54
          +++   S T+G         + +   +++   +WD  G++   +    + T     + V 
Sbjct: 28 SDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVY 87

Query: 55 DSTDRE 60
          D +  +
Sbjct: 88 DLSKGQ 93

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 36.7 bits (85), Expect = 6e-04
 Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 1/82 (1%)

Query: 21  KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK 80
             + F +WD  GQ+   +    YY N +  ++V D T  +     +  + ++        
Sbjct: 50  HTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS-KD 108

Query: 81  AAVLIYANKQDIKNSMSPVEIS 102
             + +  NK D        +++
Sbjct: 109 IIIALVGNKIDXLQEGGERKVA 130

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	126
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.95
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.95
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.95
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.94
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.94
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.94
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.94
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.94
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.94
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.94
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.93
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.93
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.93
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.93
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.92
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.92
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.91
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.9
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.89
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.89
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.88
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.88
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.88
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.88
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.88
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.87
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.87
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.87
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.87
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.87
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.86
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.86
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.86
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.86
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.86
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.86
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.86
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.86
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.86
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.86
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.86
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.85
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.85
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.85
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.85
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.85
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.85
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.85
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.85
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.85
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.85
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.85
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.85
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.85
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.85
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.85
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.85
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.85
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.85
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.85
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.85
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.85
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.85
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.84
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.84
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.84
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.84
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.84
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.84
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.84
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.84
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.84
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.84
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.84
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.84
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.84
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.84
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.84
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.83
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.83
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.83
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.83
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.83
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.83
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.83
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.83
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.83
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.83
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.82
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.82
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.82
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.82
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.82
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.81
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.81
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.81
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.81
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.81
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.81
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.81
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.81
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.81
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.81
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.8
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.8
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.8
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.79
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.67
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.74
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.74
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.74
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.73
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.72
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.72
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.71
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.69
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.68
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.67
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.65
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.65
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.64
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.64
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.64
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.61
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.61
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.61
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.59
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.59
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.59
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.59
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.59
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.59
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.59
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.58
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.58
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.57
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.57
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.56
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.56
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.56
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.54
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.54
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.53
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.53
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.52
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.51
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.51
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.51
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.51
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.5
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.5
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.5
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.5
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.5
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.49
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.49
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.49
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.47
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.46
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.46
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.45
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.44
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.43
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.43
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.41
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.41
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.4
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.37
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.37
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.35
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.34
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.33
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.33
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.32
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.3
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.3
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.29
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.26
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.23
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.22
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.22
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.21
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.18
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.14
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.14
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.12
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.12
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.03
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	98.97
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	98.94
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.9
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	98.88
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	98.87
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.83
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.82
1wxq_A	397	GTP-binding protein; structural genomics, riken st	98.79
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.74
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	98.74
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	98.72
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	98.67
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	98.66
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	98.62
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	98.61
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.56
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.53
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.5
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.4
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.3
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	98.23
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	98.08
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	98.07
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.94
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	97.67
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.62
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.55
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.29
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.73
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.06
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	95.1
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	95.03
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	94.75
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	94.6
3end_A	307	Light-independent protochlorophyllide reductase ir	94.08
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	93.93
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	93.77
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	92.84
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	92.61
3cwq_A	209	Para family chromosome partitioning protein; alpha	91.69
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	91.63
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	89.68
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	89.39
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	88.93
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	88.8
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	88.68
2xxa_A	433	Signal recognition particle protein; protein trans	88.42
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	87.76
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	87.69
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	87.41
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	85.65
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	80.46
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	80.25

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.95  E-value=2.1e-29  Score=160.50  Aligned_cols=119  Identities=18%  Similarity=0.300  Sum_probs=87.3

Q ss_pred             CCCc-ccCCccCceE--EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566           2 NEVV-HTSPTIGSNV--EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE   76 (126)
Q Consensus         2 ~~~~-~~~pTi~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~   76 (126)
                      |.|. .|.||+|...  +.+.+  ..+.+++|||+|+++|..+++.|+++++++++|||++++++|+.+..|+..+.+..
T Consensus        36 ~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~  115 (216)
T 4dkx_A           36 DSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTER  115 (216)
T ss_dssp             SCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH
T ss_pred             CCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhc
Confidence            4555 7899999554  44455  45789999999999999999999999999999999999999999999998876543


Q ss_pred             CCCCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          77 DLSKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      . +++|+++||||+|+...  .+.++     +..+++..+++|++|||++|.
T Consensus       116 ~-~~~piilVgNK~Dl~~~r~V~~~e-----~~~~a~~~~~~~~e~SAktg~  161 (216)
T 4dkx_A          116 G-SDVIIMLVGNKTDLADKRQVSIEE-----GERKAKELNVMFIETSAKAGY  161 (216)
T ss_dssp             T-TSSEEEEEEECTTCGGGCCSCHHH-----HHHHHHHHTCEEEEEBTTTTB
T ss_pred             C-CCCeEEEEeeccchHhcCcccHHH-----HhhHHHHhCCeeEEEeCCCCc
Confidence            2 67999999999999653  22222     223334456789999999884

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.95  E-value=1.3e-26  Score=141.13  Aligned_cols=124  Identities=48%  Similarity=0.882  Sum_probs=108.0

Q ss_pred             CCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           3 EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         3 ~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      ++..+.||+++....+..++..+.+|||||++.+...+..+++.+|++++|+|+++++++.....|+..++......+.|
T Consensus        24 ~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p  103 (164)
T 1r8s_A           24 EIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV  103 (164)
T ss_dssp             CSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE
T ss_pred             CcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCe
Confidence            45678899998888888899999999999999999999999999999999999999999999999998887765456899


Q ss_pred             EEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          83 VLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +++++||+|+.+....+++...+........+++++++||++|.
T Consensus       104 iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  147 (164)
T 1r8s_A          104 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGD  147 (164)
T ss_dssp             EEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTB
T ss_pred             EEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCc
Confidence            99999999998766667777777766666678899999999873

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.95  E-value=1.6e-26  Score=143.31  Aligned_cols=124  Identities=44%  Similarity=0.783  Sum_probs=106.8

Q ss_pred             CCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           3 EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         3 ~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      .+..+.||+|+....+.+++..+.+|||+|++.++..+..+++.++++++|+|+++++++..+..|+..+++.....+.|
T Consensus        40 ~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p  119 (181)
T 1fzq_A           40 DISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVP  119 (181)
T ss_dssp             CCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCC
T ss_pred             CCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCC
Confidence            34568899998888888999999999999999999999999999999999999999999999999888887764446899


Q ss_pred             EEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          83 VLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +++++||+|+.+....+++.+.+........++++++|||++|+
T Consensus       120 iilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  163 (181)
T 1fzq_A          120 VLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGE  163 (181)
T ss_dssp             EEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred             EEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCC
Confidence            99999999998766666677766655555677899999999874

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.94  E-value=7.8e-26  Score=138.41  Aligned_cols=125  Identities=48%  Similarity=0.838  Sum_probs=109.0

Q ss_pred             CCCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         2 ~~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      +++..+.||+++....+.+++..+.+|||||++.+...+..+++.+|++++|+|++++.++.....|+..+++.....+.
T Consensus        30 ~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~  109 (171)
T 1upt_A           30 GEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKA  109 (171)
T ss_dssp             SSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTC
T ss_pred             CCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCC
Confidence            35567899999988899999999999999999999999999999999999999999999999999999888876544689


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+.......++...+........+++++++||++|+
T Consensus       110 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  154 (171)
T 1upt_A          110 ILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGT  154 (171)
T ss_dssp             EEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCT
T ss_pred             EEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCc
Confidence            999999999998766667777777666666778899999999874

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.94  E-value=4.6e-26  Score=142.51  Aligned_cols=125  Identities=45%  Similarity=0.826  Sum_probs=104.1

Q ss_pred             CCCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         2 ~~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      +++..+.||+++....+..++..+.+|||||++.+...+..+++.++++++|+|+++++++..+..|+..+++.....+.
T Consensus        52 ~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~  131 (192)
T 2b6h_A           52 GEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDA  131 (192)
T ss_dssp             SCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTC
T ss_pred             CCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCC
Confidence            45567789999888888889999999999999999999999999999999999999999999999999888776545689


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+.+....+++...+........+++++++||++|.
T Consensus       132 piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~  176 (192)
T 2b6h_A          132 VLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGT  176 (192)
T ss_dssp             EEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTB
T ss_pred             eEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcC
Confidence            999999999998766667777777766666678899999999873

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.94  E-value=1.9e-25  Score=138.67  Aligned_cols=123  Identities=41%  Similarity=0.746  Sum_probs=106.7

Q ss_pred             CcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE
Q psy6566           4 VVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV   83 (126)
Q Consensus         4 ~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi   83 (126)
                      ...+.||+++....+.+++..+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+++.....+.|+
T Consensus        43 ~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi  122 (186)
T 1ksh_A           43 VDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL  122 (186)
T ss_dssp             CSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEE
T ss_pred             CCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcE
Confidence            45788999988888989999999999999999999999999999999999999999999999999988887644468999


Q ss_pred             EEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          84 LIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        84 ilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ++++||+|+......+++.+.+........+++++++||++|.
T Consensus       123 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (186)
T 1ksh_A          123 LIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGE  165 (186)
T ss_dssp             EEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred             EEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCC
Confidence            9999999998766666676666655555678899999999874

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.94  E-value=7.6e-26  Score=140.86  Aligned_cols=125  Identities=44%  Similarity=0.828  Sum_probs=109.2

Q ss_pred             CCCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         2 ~~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      +++..+.||+++....+.+++..+.+|||||++.+...+..+++.+|++++|+|+++++++.....|+..++......+.
T Consensus        45 ~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~  124 (189)
T 2x77_A           45 GDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKS  124 (189)
T ss_dssp             SCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTC
T ss_pred             CCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCC
Confidence            45567889999988889999999999999999999999999999999999999999999999999999888876555789


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+.+....+++...+........+++++++||++|+
T Consensus       125 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  169 (189)
T 2x77_A          125 LLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGD  169 (189)
T ss_dssp             EEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred             eEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCcc
Confidence            999999999998766667777777666666778899999999874

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=8.4e-26  Score=140.52  Aligned_cols=125  Identities=74%  Similarity=1.202  Sum_probs=103.1

Q ss_pred             CCCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         2 ~~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      +++..+.||+|+....+.+++..+.+|||+|++.+...+..+++.+|++++|+|++++++++.+..|+..+.+.....+.
T Consensus        39 ~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~  118 (187)
T 1zj6_A           39 NEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKA  118 (187)
T ss_dssp             TSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTC
T ss_pred             CCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCC
Confidence            34557889999888899999999999999999999999999999999999999999999999999999888876434679


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+.+....+++.+.+........+++++++||++|+
T Consensus       119 piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~  163 (187)
T 1zj6_A          119 GLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGE  163 (187)
T ss_dssp             EEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred             eEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCc
Confidence            999999999998766666776666554445667899999999873

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.94  E-value=1.1e-25  Score=139.39  Aligned_cols=124  Identities=73%  Similarity=1.201  Sum_probs=107.6

Q ss_pred             CCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           3 EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         3 ~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      ++..+.||+|+....+.+++..+.+|||+|++.+...+..+++.+|++++|+|+++++++..+..|+..+++.....++|
T Consensus        45 ~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p  124 (181)
T 2h17_A           45 EVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG  124 (181)
T ss_dssp             SCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCE
T ss_pred             CCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCe
Confidence            44578899998888899999999999999999999999999999999999999999999999999998888764346899


Q ss_pred             EEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          83 VLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +++++||+|+......+++.+.+........+++++++||++|.
T Consensus       125 iilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~  168 (181)
T 2h17_A          125 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGE  168 (181)
T ss_dssp             EEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTB
T ss_pred             EEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCc
Confidence            99999999998766667777776655556678899999999873

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.94  E-value=2.7e-25  Score=138.79  Aligned_cols=124  Identities=26%  Similarity=0.467  Sum_probs=105.0

Q ss_pred             CCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           3 EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         3 ~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      .+..+.||++.....+.+++..+.+|||||++.++..+..+++.++++++|+|++++++++++..|+..+++.....+.|
T Consensus        47 ~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p  126 (190)
T 1m2o_B           47 RLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVP  126 (190)
T ss_dssp             CCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC
T ss_pred             CCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCC
Confidence            45678899999888999999999999999999999999999999999999999999999999999998887764446899


Q ss_pred             EEEEEecCCCCCCCCHHHHHhhcCcCc-------ccCCceEEEEeeeeeCC
Q psy6566          83 VLIYANKQDIKNSMSPVEISNLLDLTS-------IKKQQWHIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~~~~~~~v~~~~~~~~-------~~~~~~~~~~~Sa~~~~  126 (126)
                      +++++||+|+......+++.+.+....       ....++++++|||++|+
T Consensus       127 iilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  177 (190)
T 1m2o_B          127 FVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN  177 (190)
T ss_dssp             EEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTB
T ss_pred             EEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCC
Confidence            999999999987666666666554332       23456899999999874

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.93  E-value=1.5e-25  Score=140.82  Aligned_cols=124  Identities=24%  Similarity=0.491  Sum_probs=95.6

Q ss_pred             CCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           3 EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         3 ~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      .+..+.||++.....+.+++..+.+|||||++.++..+..+++.++++++|+|+++++++..+..|+..+++.....++|
T Consensus        49 ~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p  128 (198)
T 1f6b_A           49 RLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVP  128 (198)
T ss_dssp             ------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSC
T ss_pred             CCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCc
Confidence            45578899998888899988999999999999999999999999999999999999999999999999888764446899


Q ss_pred             EEEEEecCCCCCCCCHHHHHhhcCcCc---------c---cCCceEEEEeeeeeCC
Q psy6566          83 VLIYANKQDIKNSMSPVEISNLLDLTS---------I---KKQQWHIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~~~~~~~v~~~~~~~~---------~---~~~~~~~~~~Sa~~~~  126 (126)
                      +++++||+|+......+++.+.+....         .   ....+++++|||++|+
T Consensus       129 iilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~  184 (198)
T 1f6b_A          129 ILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQ  184 (198)
T ss_dssp             EEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTB
T ss_pred             EEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCC
Confidence            999999999987656666655544221         1   1256789999999874

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.93  E-value=6.5e-25  Score=136.69  Aligned_cols=121  Identities=26%  Similarity=0.545  Sum_probs=105.3

Q ss_pred             ccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEE
Q psy6566           6 HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLI   85 (126)
Q Consensus         6 ~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piil   85 (126)
                      .+.||++.....+..++..+.+|||+|++.+...+..+++.++++++|+|+++++++..+..|+..+++.....++|+++
T Consensus        50 ~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piil  129 (188)
T 1zd9_A           50 DMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLV  129 (188)
T ss_dssp             SCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEE
T ss_pred             ccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEE
Confidence            67899998888888899999999999999999999999999999999999999999999999998887764446899999


Q ss_pred             EEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          86 YANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        86 v~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ++||+|+.......++...+........+++++++||++|.
T Consensus       130 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~  170 (188)
T 1zd9_A          130 LGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKD  170 (188)
T ss_dssp             EEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred             EEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCC
Confidence            99999998765666677766655555678899999999874

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.93  E-value=4.8e-25  Score=136.37  Aligned_cols=124  Identities=48%  Similarity=0.812  Sum_probs=103.5

Q ss_pred             CCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           3 EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         3 ~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      ++..+.||+|+....+.+++..+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+++.....+.|
T Consensus        42 ~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p  121 (183)
T 1moz_A           42 EVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA  121 (183)
T ss_dssp             EEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCE
T ss_pred             CcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCe
Confidence            44578899998888899999999999999999999999999999999999999999999999999998887764457899


Q ss_pred             EEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          83 VLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +++++||+|+.+....+++.+.+........+++++++||++|+
T Consensus       122 iilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (183)
T 1moz_A          122 LLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGE  165 (183)
T ss_dssp             EEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTB
T ss_pred             EEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCc
Confidence            99999999998766667777776655555677899999999873

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.93  E-value=3.7e-25  Score=138.52  Aligned_cols=121  Identities=36%  Similarity=0.660  Sum_probs=103.6

Q ss_pred             ccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC-------
Q psy6566           6 HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL-------   78 (126)
Q Consensus         6 ~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~-------   78 (126)
                      .+.||+|+....+...+..+.+|||+|++.+..++..+++.+|++++|+|+++++++..+..|+..+++....       
T Consensus        46 ~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  125 (199)
T 4bas_A           46 HITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGG  125 (199)
T ss_dssp             CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTS
T ss_pred             ccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhccccc
Confidence            5689999888888889999999999999999999999999999999999999999999999999888765221       


Q ss_pred             CCCeEEEEEecCCCCCCCCHHHHHhhcCcCcc-cCCceEEEEeeeeeCC
Q psy6566          79 SKAAVLIYANKQDIKNSMSPVEISNLLDLTSI-KKQQWHIQSCCALTGE  126 (126)
Q Consensus        79 ~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~Sa~~~~  126 (126)
                      .++|+++|+||+|+......+++...+..... +..++++++|||++|+
T Consensus       126 ~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  174 (199)
T 4bas_A          126 GRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGT  174 (199)
T ss_dssp             CBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTB
T ss_pred             CCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCcc
Confidence            27899999999999887666677766664443 5678899999999873

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.92  E-value=1.8e-24  Score=134.76  Aligned_cols=122  Identities=39%  Similarity=0.717  Sum_probs=103.7

Q ss_pred             cccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC--CCCe
Q psy6566           5 VHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL--SKAA   82 (126)
Q Consensus         5 ~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~p   82 (126)
                      ..+.||+++....+.+++..+.+|||+|++.+...+..+++.++++++|+|++++.++..+..|+..+++....  .+.|
T Consensus        49 ~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~p  128 (190)
T 2h57_A           49 QNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIP  128 (190)
T ss_dssp             SSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCC
T ss_pred             CCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCe
Confidence            36889999888888889999999999999999999999999999999999999999999999998888776544  5789


Q ss_pred             EEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          83 VLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +++++||+|+......+++............+++++++||++|.
T Consensus       129 iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  172 (190)
T 2h57_A          129 ILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGE  172 (190)
T ss_dssp             EEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred             EEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCc
Confidence            99999999998766666666655433334567899999999873

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.91  E-value=3.8e-24  Score=143.70  Aligned_cols=124  Identities=48%  Similarity=0.882  Sum_probs=105.2

Q ss_pred             CCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           3 EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         3 ~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      .+....||++.....+..+++.+.+|||+|++.+..++..+++.++++++|+|++++.++..+..++..++.....+++|
T Consensus       189 ~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~p  268 (329)
T 3o47_A          189 EIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV  268 (329)
T ss_dssp             CCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCE
T ss_pred             CCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCe
Confidence            45556699999998899999999999999999999999999999999999999999999999999998888776556899


Q ss_pred             EEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          83 VLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +++|+||+|+.+.....++...+........+++++++||++|.
T Consensus       269 iilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~  312 (329)
T 3o47_A          269 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGD  312 (329)
T ss_dssp             EEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTB
T ss_pred             EEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCc
Confidence            99999999998876777788888777777788999999999873

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.90  E-value=6.1e-24  Score=143.62  Aligned_cols=119  Identities=20%  Similarity=0.366  Sum_probs=96.0

Q ss_pred             cCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCC----------cccHHHHHHHHHHHhCCC
Q psy6566           7 TSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD----------RERISLTKEELYKMLNHE   76 (126)
Q Consensus         7 ~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~----------~~~~~~~~~~~~~~~~~~   76 (126)
                      +.||+|+....+.++++.+++||||||++++.+|..|+++++++|||+|+++          .+++.+...|+..+....
T Consensus       177 ~~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~  256 (353)
T 1cip_A          177 RVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK  256 (353)
T ss_dssp             CCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred             cCceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCc
Confidence            4678999988999999999999999999999999999999999999999998          578999999999998876


Q ss_pred             CCCCCeEEEEEecCCCCC-----------------CCCHHHHHhhcCc---Ccc---cCCceEEEEeeeeeC
Q psy6566          77 DLSKAAVLIYANKQDIKN-----------------SMSPVEISNLLDL---TSI---KKQQWHIQSCCALTG  125 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~-----------------~~~~~~v~~~~~~---~~~---~~~~~~~~~~Sa~~~  125 (126)
                      ...+.|+++++||+|+..                 ..+.++.......   ...   ..+++.+++|||++|
T Consensus       257 ~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~  328 (353)
T 1cip_A          257 WFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT  328 (353)
T ss_dssp             GGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCH
T ss_pred             cccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCc
Confidence            667899999999999842                 1223333222211   000   246789999999986

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.89  E-value=3.6e-23  Score=138.30  Aligned_cols=119  Identities=19%  Similarity=0.337  Sum_probs=95.9

Q ss_pred             cCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECC----------CcccHHHHHHHHHHHhCCC
Q psy6566           7 TSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDST----------DRERISLTKEELYKMLNHE   76 (126)
Q Consensus         7 ~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~----------~~~~~~~~~~~~~~~~~~~   76 (126)
                      ..||+|+....+.++++.+++|||+||++++.+|.+|+++++++++|+|++          +.+++.+...|+..+....
T Consensus       151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~  230 (327)
T 3ohm_A          151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP  230 (327)
T ss_dssp             CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred             cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence            578999999999999999999999999999999999999999999999554          6789999999999998877


Q ss_pred             CCCCCeEEEEEecCCCCCC------------------CCHHHHHhhc-----CcCcccCCceEEEEeeeeeC
Q psy6566          77 DLSKAAVLIYANKQDIKNS------------------MSPVEISNLL-----DLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~------------------~~~~~v~~~~-----~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      ...+.|+++++||+|+..+                  .+.++....+     .......+++.++++||+++
T Consensus       231 ~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~  302 (327)
T 3ohm_A          231 WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDT  302 (327)
T ss_dssp             GGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCH
T ss_pred             ccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecC
Confidence            6678999999999997531                  1223322221     11223456788999999875

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.89  E-value=1.2e-23  Score=140.28  Aligned_cols=117  Identities=14%  Similarity=0.074  Sum_probs=84.7

Q ss_pred             ccCCccCceEEEEEECCEEEEEEEcCCCcchHH---HHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCC--CCCCC
Q psy6566           6 HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRA---AWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNH--EDLSK   80 (126)
Q Consensus         6 ~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~---~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~   80 (126)
                      .+.||+|+....+. ..+++++||||||++|+.   .++.|+++++++++|+|++++  +.+...||...+..  ...++
T Consensus        30 ~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~--~~~~~~~l~~~l~~~~~~~~~  106 (331)
T 3r7w_B           30 YLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE--YINAITNLAMIIEYAYKVNPS  106 (331)
T ss_dssp             TCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC--TTHHHHHHHHHHHHHHHHCTT
T ss_pred             eecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCch--HHHHHHHHHHHHHHHhhcCCC
Confidence            36899998877652 458999999999999964   468899999999999999987  33344444333221  11268


Q ss_pred             CeEEEEEecCCCCCCCC----HHHHHhhcCcCcccC----CceEEEEeeeeeC
Q psy6566          81 AAVLIYANKQDIKNSMS----PVEISNLLDLTSIKK----QQWHIQSCCALTG  125 (126)
Q Consensus        81 ~piilv~nK~D~~~~~~----~~~v~~~~~~~~~~~----~~~~~~~~Sa~~~  125 (126)
                      +|+++++||+|+..+..    .+++....+..+++.    .+++|+++||++.
T Consensus       107 ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd~  159 (331)
T 3r7w_B          107 INIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFDH  159 (331)
T ss_dssp             CEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSSS
T ss_pred             CcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCCC
Confidence            99999999999976421    134555555555543    6899999999863

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.88  E-value=8.7e-23  Score=138.40  Aligned_cols=119  Identities=19%  Similarity=0.362  Sum_probs=87.9

Q ss_pred             cCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCC----------cccHHHHHHHHHHHhCCC
Q psy6566           7 TSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD----------RERISLTKEELYKMLNHE   76 (126)
Q Consensus         7 ~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~----------~~~~~~~~~~~~~~~~~~   76 (126)
                      +.||+|+....+.++++.+++||||||+.++..|..++++++++|||+|+++          .+++.++..|+..+....
T Consensus       185 r~~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~  264 (362)
T 1zcb_A          185 RRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR  264 (362)
T ss_dssp             CCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred             cCCccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcch
Confidence            4578898888899999999999999999999999999999999999999998          789999999999998876


Q ss_pred             CCCCCeEEEEEecCCCCCC------------------CCHHHHHhhc-----CcCccc-CCceEEEEeeeeeC
Q psy6566          77 DLSKAAVLIYANKQDIKNS------------------MSPVEISNLL-----DLTSIK-KQQWHIQSCCALTG  125 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~------------------~~~~~v~~~~-----~~~~~~-~~~~~~~~~Sa~~~  125 (126)
                      ...+.|+++++||+|+..+                  .+.++.....     ...... .+++.+++|||++|
T Consensus       265 ~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~  337 (362)
T 1zcb_A          265 VFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINT  337 (362)
T ss_dssp             GGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCH
T ss_pred             hhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCc
Confidence            6678999999999998521                  2333333322     111111 45678999999986

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.88  E-value=3.4e-23  Score=138.95  Aligned_cols=88  Identities=26%  Similarity=0.478  Sum_probs=81.5

Q ss_pred             cCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECC----------CcccHHHHHHHHHHHhCCC
Q psy6566           7 TSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDST----------DRERISLTKEELYKMLNHE   76 (126)
Q Consensus         7 ~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~----------~~~~~~~~~~~~~~~~~~~   76 (126)
                      +.||+|+....+.++++.+++|||+||++++.+|..|+++++++|+|+|++          +.+++.+...|+..++...
T Consensus       145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~  224 (340)
T 4fid_A          145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE  224 (340)
T ss_dssp             CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred             ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence            568899999999999999999999999999999999999999999999998          6789999999999998877


Q ss_pred             CCCCCeEEEEEecCCCCC
Q psy6566          77 DLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~   94 (126)
                      ...+.|+++++||+|+..
T Consensus       225 ~~~~~piiLv~NK~DL~~  242 (340)
T 4fid_A          225 FLKGAVKLIFLNKMDLFE  242 (340)
T ss_dssp             GGTTSEEEEEEECHHHHH
T ss_pred             ccCCCeEEEEEECchhhh
Confidence            667899999999999753

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.88  E-value=1.9e-23  Score=142.89  Aligned_cols=86  Identities=24%  Similarity=0.430  Sum_probs=79.2

Q ss_pred             CCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCC----------cccHHHHHHHHHHHhCCCC
Q psy6566           8 SPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD----------RERISLTKEELYKMLNHED   77 (126)
Q Consensus         8 ~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~----------~~~~~~~~~~~~~~~~~~~   77 (126)
                      .||+|+....+.++++.+++|||+||++++.+|..|+++++++|+|+|+++          .+++.++..|+..+.....
T Consensus       202 ~~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~  281 (402)
T 1azs_C          202 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRW  281 (402)
T ss_dssp             CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTT
T ss_pred             cceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhccc
Confidence            457888888888999999999999999999999999999999999999999          8999999999999988766


Q ss_pred             CCCCeEEEEEecCCCC
Q psy6566          78 LSKAAVLIYANKQDIK   93 (126)
Q Consensus        78 ~~~~piilv~nK~D~~   93 (126)
                      ..++|+++++||+|+.
T Consensus       282 ~~~~piiLvgNK~DL~  297 (402)
T 1azs_C          282 LRTISVILFLNKQDLL  297 (402)
T ss_dssp             CSSCCEEEEEECHHHH
T ss_pred             CCCCeEEEEEEChhhh
Confidence            6789999999999974

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.88  E-value=5.7e-23  Score=129.24  Aligned_cols=115  Identities=21%  Similarity=0.294  Sum_probs=84.0

Q ss_pred             ccCCccCc--eEEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGS--NVEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++.  ....+.+++  +.+.+|||+|++++..++..+++.++++++|+|++++.+++.+..|+..+.+.. ..++
T Consensus        57 ~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~  135 (201)
T 2hup_A           57 RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA-GSNI  135 (201)
T ss_dssp             --------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHS-CTTC
T ss_pred             CCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCC
Confidence            67799884  456666655  799999999999999999999999999999999999999999988887775543 2679


Q ss_pred             eEEEEEecCCCCC--CCCHHHHHhhcCcCcccCCce-EEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKN--SMSPVEISNLLDLTSIKKQQW-HIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~--~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~  126 (126)
                      |+++++||+|+..  ....+++...     ++..++ +++++||++|+
T Consensus       136 piilv~NK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~~SA~~g~  178 (201)
T 2hup_A          136 VQLLIGNKSDLSELREVSLAEAQSL-----AEHYDILCAIETSAKDSS  178 (201)
T ss_dssp             EEEEEEECTTCGGGCCSCHHHHHHH-----HHHTTCSEEEECBTTTTB
T ss_pred             CEEEEEECCccccccccCHHHHHHH-----HHHcCCCEEEEEeCCCCC
Confidence            9999999999965  2233333221     223455 89999999873

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.88  E-value=1.9e-22  Score=125.77  Aligned_cols=113  Identities=17%  Similarity=0.223  Sum_probs=88.3

Q ss_pred             cCCccCceEEEEEE-----CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECC------CcccHHHHHHHHHHHhCC
Q psy6566           7 TSPTIGSNVEEVIW-----KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDST------DRERISLTKEELYKMLNH   75 (126)
Q Consensus         7 ~~pTi~~~~~~~~~-----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~------~~~~~~~~~~~~~~~~~~   75 (126)
                      +.||++.......+     +.+.+.+|||+|++.+...+..+++.++++++|+|++      +.++++.+..|+..+.. 
T Consensus        53 ~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-  131 (198)
T 3t1o_A           53 DERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-  131 (198)
T ss_dssp             SCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-
T ss_pred             cccceeeeecccccccccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-
Confidence            56788866554332     4578999999999999999999999999999999999      55677778777776622 


Q ss_pred             CCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCce-EEEEeeeeeCC
Q psy6566          76 EDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQW-HIQSCCALTGE  126 (126)
Q Consensus        76 ~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~  126 (126)
                       ...++|+++++||+|+.+....+++.....     ..++ +++++||++|+
T Consensus       132 -~~~~~piilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~  177 (198)
T 3t1o_A          132 -TLDDVPIVIQVNKRDLPDALPVEMVRAVVD-----PEGKFPVLEAVATEGK  177 (198)
T ss_dssp             -CTTSSCEEEEEECTTSTTCCCHHHHHHHHC-----TTCCSCEEECBGGGTB
T ss_pred             -ccCCCCEEEEEEchhcccccCHHHHHHHHH-----hcCCceEEEEecCCCc
Confidence             237899999999999987665555544433     4456 89999999874

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.87  E-value=1.2e-22  Score=123.77  Aligned_cols=116  Identities=13%  Similarity=0.121  Sum_probs=69.2

Q ss_pred             ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           6 HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         6 ~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      .+.||.+... ..+.+  ....+.+|||+|++.+...+..+++.++++++|+|++++++++.+..|+..+.+.....++|
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p  108 (166)
T 3q72_A           29 PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVP  108 (166)
T ss_dssp             -------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCC
T ss_pred             CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            4557777443 34555  45689999999999999999999999999999999999999999999998887765457899


Q ss_pred             EEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          83 VLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +++++||+|+.+..  ..++..     ......+++++++||++|+
T Consensus       109 ~ilv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~  149 (166)
T 3q72_A          109 IILVGNKSDLVRSREVSVDEGR-----ACAVVFDCKFIETSAALHH  149 (166)
T ss_dssp             EEEEEECTTCCSSCCSCHHHHH-----HHHHHTTCEEEECBGGGTB
T ss_pred             EEEEEeccccccccccCHHHHH-----HHHHHhCCcEEEeccCCCC
Confidence            99999999997532  222221     1222345689999999874

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.87  E-value=3.8e-23  Score=127.87  Aligned_cols=115  Identities=19%  Similarity=0.291  Sum_probs=76.2

Q ss_pred             ccCCccCce--EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++..  ...+.+++  ..+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+.... ..++
T Consensus        36 ~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~  114 (183)
T 2fu5_C           36 TFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHA-SADV  114 (183)
T ss_dssp             CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTC
T ss_pred             CCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCC
Confidence            567888844  45666655  889999999999999999999999999999999999999999988887775532 2578


Q ss_pred             eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+...  ...++...     +.+..+++++++||++|+
T Consensus       115 piilv~nK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~~~Sa~~~~  156 (183)
T 2fu5_C          115 EKMILGNKCDVNDKRQVSKERGEK-----LALDYGIKFMETSAKANI  156 (183)
T ss_dssp             EEEEEEEC--CCSCCCSCHHHHHH-----HHHHHTCEEEECCC---C
T ss_pred             CEEEEEECccCCccCcCCHHHHHH-----HHHHcCCeEEEEeCCCCC
Confidence            99999999999753  22233222     122335689999999874

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.87  E-value=8.7e-23  Score=124.50  Aligned_cols=120  Identities=19%  Similarity=0.292  Sum_probs=88.9

Q ss_pred             ccCCccCce--EEEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSN--VEEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++..  ...+.+.  ...+.+|||||++.+...+..+++.++++++|+|++++.++..+..|+..+.... ..+.
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~  109 (170)
T 1ek0_A           31 NKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA-SKDI  109 (170)
T ss_dssp             TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTC
T ss_pred             CCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhc-CCCC
Confidence            677999854  4556663  4689999999999999999999999999999999999999999988887776543 2679


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+.......++............+++++++||++|.
T Consensus       110 piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  154 (170)
T 1ek0_A          110 IIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGE  154 (170)
T ss_dssp             EEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred             cEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            999999999986431101111111111222345689999999874

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.87  E-value=1.2e-22  Score=125.39  Aligned_cols=115  Identities=19%  Similarity=0.165  Sum_probs=87.7

Q ss_pred             ccCCccCceE-EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           6 HTSPTIGSNV-EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         6 ~~~pTi~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      .+.||++... ..+.+++  +.+.+|||+|++.+...+..+++.++++++|+|++++++++.+..|+..+.+.....++|
T Consensus        34 ~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p  113 (181)
T 3t5g_A           34 SYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIP  113 (181)
T ss_dssp             CCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CC
T ss_pred             CCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            7789999554 4455555  678999999999999899999999999999999999999999999888876654446899


Q ss_pred             EEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          83 VLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        83 iilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      +++++||+|+...  ...++...     +.+..+++++++||++|
T Consensus       114 ~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~  153 (181)
T 3t5g_A          114 IMLVGNKKDLHMERVISYEEGKA-----LAESWNAAFLESSAKEN  153 (181)
T ss_dssp             EEEEEECTTCTTTCCSCHHHHHH-----HHHHTTCEEEECCTTSH
T ss_pred             EEEEEECccchhcceecHHHHHH-----HHHHhCCcEEEEecCCC
Confidence            9999999998653  22222221     22334568999999986

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.87  E-value=1.1e-22  Score=128.16  Aligned_cols=115  Identities=22%  Similarity=0.299  Sum_probs=88.3

Q ss_pred             ccCCccCceE--EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNV--EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++...  ..+.+++  +.+.+|||+|++++...+..+++.++++++|+|++++.+++.+..|+..+.... ..+.
T Consensus        54 ~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~  132 (201)
T 2ew1_A           54 GQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-SNKV  132 (201)
T ss_dssp             TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTC
T ss_pred             CCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCC
Confidence            6779998554  5566654  689999999999999999999999999999999999999999888877665432 2578


Q ss_pred             eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+...  ...++...     ++...+++++++||++|+
T Consensus       133 piilv~NK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~~~Sa~~g~  174 (201)
T 2ew1_A          133 ITVLVGNKIDLAERREVSQQRAEE-----FSEAQDMYYLETSAKESD  174 (201)
T ss_dssp             EEEEEEECGGGGGGCSSCHHHHHH-----HHHHHTCCEEECCTTTCT
T ss_pred             CEEEEEECCCCccccccCHHHHHH-----HHHHcCCEEEEEeCCCCC
Confidence            99999999998642  22222221     122335679999999874

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.86  E-value=4.8e-22  Score=122.55  Aligned_cols=115  Identities=17%  Similarity=0.324  Sum_probs=89.2

Q ss_pred             ccCCccCce--EEEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSN--VEEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++..  ...+.+.  ...+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+.... .++.
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~  118 (181)
T 2efe_B           40 FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQG-NPNM  118 (181)
T ss_dssp             TSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTC
T ss_pred             cCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCC
Confidence            567888844  4555553  4689999999999999999999999999999999999999999988887776543 2589


Q ss_pred             eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+...  ...+++...     .+..+++++++||++|+
T Consensus       119 p~i~v~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~g~  160 (181)
T 2efe_B          119 VMALAGNKSDLLDARKVTAEDAQTY-----AQENGLFFMETSAKTAT  160 (181)
T ss_dssp             EEEEEEECTTCTTTCCSCHHHHHHH-----HHHTTCEEEECCSSSCT
T ss_pred             cEEEEEECCcccccccCCHHHHHHH-----HHHcCCEEEEEECCCCC
Confidence            99999999999653  223333222     22345689999999874

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.86  E-value=4.1e-22  Score=124.15  Aligned_cols=116  Identities=22%  Similarity=0.292  Sum_probs=90.3

Q ss_pred             ccCCccCceE--EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNV--EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++...  ..+.+  ....+.+|||+|++.+...+..+++.++++++|+|++++.++..+..|+..+.......++
T Consensus        43 ~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~  122 (195)
T 1x3s_A           43 ELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDI  122 (195)
T ss_dssp             TCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCC
T ss_pred             cCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCC
Confidence            6788988554  45555  3478999999999999999999999999999999999999999999888887665444679


Q ss_pred             eEEEEEecCCCCCC-CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS-MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+... ....+...     +....+++++++||++|.
T Consensus       123 p~ilv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~  163 (195)
T 1x3s_A          123 VNMLVGNKIDKENREVDRNEGLK-----FARKHSMLFIEASAKTCD  163 (195)
T ss_dssp             EEEEEEECTTSSSCCSCHHHHHH-----HHHHTTCEEEECCTTTCT
T ss_pred             cEEEEEECCcCcccccCHHHHHH-----HHHHcCCEEEEecCCCCC
Confidence            99999999999542 22222222     222345689999999874

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.86  E-value=2e-22  Score=125.35  Aligned_cols=115  Identities=20%  Similarity=0.268  Sum_probs=89.0

Q ss_pred             ccCCccCce--EEEEEECC--EEEEEEEcCCCcchH-HHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCC
Q psy6566           6 HTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQSLR-AAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK   80 (126)
Q Consensus         6 ~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~~~-~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~   80 (126)
                      .+.||++..  ...+.+++  ..+.+|||+|++.+. .++..+++.++++++|+|++++.+++.+..|+..+.+.....+
T Consensus        48 ~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~  127 (189)
T 1z06_A           48 RTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAND  127 (189)
T ss_dssp             SCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSC
T ss_pred             CCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC
Confidence            577888854  45566644  789999999999998 8899999999999999999999999999888887766543467


Q ss_pred             CeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          81 AAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        81 ~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      .|+++++||+|+...  ...++...     +....+++++++||++|
T Consensus       128 ~piilv~nK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~~~Sa~~~  169 (189)
T 1z06_A          128 IPRILVGNKCDLRSAIQVPTDLAQK-----FADTHSMPLFETSAKNP  169 (189)
T ss_dssp             CCEEEEEECTTCGGGCCSCHHHHHH-----HHHHTTCCEEECCSSSG
T ss_pred             CCEEEEEECccccccceeCHHHHHH-----HHHHcCCEEEEEeCCcC
Confidence            999999999999652  22222221     12234567999999987

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.86  E-value=3.1e-22  Score=122.04  Aligned_cols=115  Identities=21%  Similarity=0.326  Sum_probs=89.2

Q ss_pred             ccCCccCceE--EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNV--EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++...  ..+.+  .+..+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+.... .+++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~  112 (170)
T 1r2q_A           34 FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNI  112 (170)
T ss_dssp             TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTC
T ss_pred             CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCC
Confidence            5678888554  45555  35789999999999999999999999999999999999999999988887776543 2679


Q ss_pred             eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+...  ...++...     +....+++++++||++|+
T Consensus       113 ~iilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~g~  154 (170)
T 1r2q_A          113 VIALSGNKADLANKRAVDFQEAQS-----YADDNSLLFMETSAKTSM  154 (170)
T ss_dssp             EEEEEEECGGGGGGCCSCHHHHHH-----HHHHTTCEEEECCTTTCT
T ss_pred             cEEEEEECccCccccccCHHHHHH-----HHHHcCCeEEEEeCCCCC
Confidence            99999999998642  22223222     122346789999999874

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.86  E-value=1.2e-22  Score=129.02  Aligned_cols=113  Identities=19%  Similarity=0.226  Sum_probs=86.2

Q ss_pred             ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHH-HHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISL-TKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++... ..+.+  ..+.+.+|||+|++.+..++..+++.++++++|+|++++.++.. ...|+..+....  ++.
T Consensus        55 ~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~  132 (214)
T 3q3j_B           55 TYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC--PST  132 (214)
T ss_dssp             SCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC--TTS
T ss_pred             CcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC--CCC
Confidence            6789999654 33444  45789999999999999999999999999999999999999998 466666554432  689


Q ss_pred             eEEEEEecCCCCCC--------------CCHHHHHhhcCcCcccCCce-EEEEeeeeeC
Q psy6566          82 AVLIYANKQDIKNS--------------MSPVEISNLLDLTSIKKQQW-HIQSCCALTG  125 (126)
Q Consensus        82 piilv~nK~D~~~~--------------~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~  125 (126)
                      |+++|+||+|+...              ...++.     ..++...++ ++++|||++|
T Consensus       133 piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~~~~~~~~e~SA~~g  186 (214)
T 3q3j_B          133 RVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQG-----CAIAKQLGAEIYLEGSAFTS  186 (214)
T ss_dssp             EEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHH-----HHHHHHHTCSEEEECCTTTC
T ss_pred             CEEEEEEChhhccchhhhhhhcccccCccCHHHH-----HHHHHHcCCCEEEEeccCCC
Confidence            99999999999642              222221     122233456 8999999987

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.86  E-value=6.7e-22  Score=124.19  Aligned_cols=115  Identities=19%  Similarity=0.283  Sum_probs=88.2

Q ss_pred             ccCCccCceE--EEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNV--EEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||+|...  ..+.+.  ...+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+.... ..+.
T Consensus        36 ~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~  114 (203)
T 1zbd_A           36 AFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNA  114 (203)
T ss_dssp             CCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CSSC
T ss_pred             CcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCC
Confidence            6789998554  445553  5789999999999999999999999999999999999999999988877765432 3578


Q ss_pred             eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+...  ...++...     +....+++++++||++|.
T Consensus       115 piilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~  156 (203)
T 1zbd_A          115 QVLLVGNKCDMEDERVVSSERGRQ-----LADHLGFEFFEASAKDNI  156 (203)
T ss_dssp             EEEEEEECTTCTTSCCSCHHHHHH-----HHHHHTCEEEECBTTTTB
T ss_pred             CEEEEEECcccCcccccCHHHHHH-----HHHHCCCeEEEEECCCCC
Confidence            99999999999753  22222221     112234689999999873

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.86  E-value=7.3e-22  Score=123.20  Aligned_cols=115  Identities=22%  Similarity=0.289  Sum_probs=88.5

Q ss_pred             ccCCccCce--EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++..  ...+.+++  +.+.+|||+|++.+...+..+++.+|++++|+|++++.+++.+..|+..+.... ..+.
T Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~  122 (196)
T 3tkl_A           44 SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENV  122 (196)
T ss_dssp             CCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTC
T ss_pred             CCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCC
Confidence            667888844  45566655  789999999999999999999999999999999999999999988877765442 2578


Q ss_pred             eEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+....  ...+..     .+....+++++++||++|.
T Consensus       123 p~ilv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~g~  164 (196)
T 3tkl_A          123 NKLLVGNKCDLTTKKVVDYTTAK-----EFADSLGIPFLETSAKNAT  164 (196)
T ss_dssp             EEEEEEECTTCTTTCCSCHHHHH-----HHHHHTTCCEEEECTTTCT
T ss_pred             CEEEEEECcccccccccCHHHHH-----HHHHHcCCcEEEEeCCCCC
Confidence            999999999997542  222221     1122335679999999874

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.86  E-value=5.5e-22  Score=123.80  Aligned_cols=115  Identities=20%  Similarity=0.308  Sum_probs=89.9

Q ss_pred             ccCCccCceEEE--EEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNVEE--VIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~~~--~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||+|.....  +.+  ....+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+.+.. ..++
T Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~  129 (192)
T 2fg5_A           51 NISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHG-PENI  129 (192)
T ss_dssp             TCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHS-CTTC
T ss_pred             CcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCC
Confidence            678999966544  444  55789999999999999999999999999999999999999999988887765432 3579


Q ss_pred             eEEEEEecCCCCC--CCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKN--SMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+..  ....++....     ++..+++++++||++|.
T Consensus       130 piiiv~NK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~~~  171 (192)
T 2fg5_A          130 VMAIAGNKCDLSDIREVPLKDAKEY-----AESIGAIVVETSAKNAI  171 (192)
T ss_dssp             EEEEEEECGGGGGGCCSCHHHHHHH-----HHTTTCEEEECBTTTTB
T ss_pred             cEEEEEECcccccccccCHHHHHHH-----HHHcCCEEEEEeCCCCc
Confidence            9999999999864  2233333222     23456789999999873

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.86  E-value=7.4e-21  Score=118.11  Aligned_cols=111  Identities=14%  Similarity=0.246  Sum_probs=84.9

Q ss_pred             ccCCccCceEEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE
Q psy6566           6 HTSPTIGSNVEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV   83 (126)
Q Consensus         6 ~~~pTi~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi   83 (126)
                      .+.||.+.....+.+++  +.+.+|||+|++.+.     +++.++++++|||++++.+++.+..|+..+.......+.|+
T Consensus        48 ~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi  122 (184)
T 3ihw_A           48 EESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPM  122 (184)
T ss_dssp             CCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCE
T ss_pred             CcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence            57788776667777755  678889999999987     77889999999999999999999998888876644467899


Q ss_pred             EEEEecCCCCC----CCCHHHHHhhcCcCcccCC-ceEEEEeeeeeCC
Q psy6566          84 LIYANKQDIKN----SMSPVEISNLLDLTSIKKQ-QWHIQSCCALTGE  126 (126)
Q Consensus        84 ilv~nK~D~~~----~~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~  126 (126)
                      ++++||+|+..    ....++...     ++... .++++++||++|.
T Consensus       123 ilv~nK~Dl~~~~~~~v~~~~~~~-----~~~~~~~~~~~e~Sa~~~~  165 (184)
T 3ihw_A          123 VLVGTQDAISAANPRVIDDSRARK-----LSTDLKRCTYYETCATYGL  165 (184)
T ss_dssp             EEEEECTTCBTTBCCCSCHHHHHH-----HHHHTTTCEEEEEBTTTTB
T ss_pred             EEEEECcccccccccccCHHHHHH-----HHHHcCCCeEEEecCCCCC
Confidence            99999999842    222222222     12222 3689999999873

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.86  E-value=6.5e-22  Score=122.51  Aligned_cols=115  Identities=23%  Similarity=0.365  Sum_probs=88.7

Q ss_pred             ccCCccCce--EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++..  ...+.+++  ..+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+..... .+.
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~  116 (186)
T 2bme_A           38 DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS-QNI  116 (186)
T ss_dssp             TCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTC
T ss_pred             CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCC
Confidence            577888844  45566655  7899999999999999999999999999999999999999999888776654322 578


Q ss_pred             eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+...  ....+...     +....+++++++||++|+
T Consensus       117 piilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~  158 (186)
T 2bme_A          117 VIILCGNKKDLDADREVTFLEASR-----FAQENELMFLETSALTGE  158 (186)
T ss_dssp             EEEEEEECGGGGGGCCSCHHHHHH-----HHHHTTCEEEECCTTTCT
T ss_pred             cEEEEEECcccccccccCHHHHHH-----HHHHcCCEEEEecCCCCC
Confidence            99999999998642  22222221     223345789999999874

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.86  E-value=4.4e-22  Score=125.15  Aligned_cols=116  Identities=17%  Similarity=0.208  Sum_probs=78.1

Q ss_pred             ccCCccC--ceEEEEEEC----CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC--
Q psy6566           6 HTSPTIG--SNVEEVIWK----NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED--   77 (126)
Q Consensus         6 ~~~pTi~--~~~~~~~~~----~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~--   77 (126)
                      .+.||++  +....+.+.    ...+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+.....  
T Consensus        50 ~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~  129 (208)
T 2yc2_C           50 DYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDR  129 (208)
T ss_dssp             -----------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCT
T ss_pred             CCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhccc
Confidence            7789998  455667774    67999999999999999999999999999999999999999999988877765432  


Q ss_pred             CCCCeEEEEEecCCCCC---CCCHHHHHhhcCcCcccCCceEEEEeeeee-CC
Q psy6566          78 LSKAAVLIYANKQDIKN---SMSPVEISNLLDLTSIKKQQWHIQSCCALT-GE  126 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~-~~  126 (126)
                      ..++|+++++||+|+..   ....++....     .+..+++++++||++ |.
T Consensus       130 ~~~~piilv~nK~Dl~~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~~~~  177 (208)
T 2yc2_C          130 ERPLRAVLVANKTDLPPQRHQVRLDMAQDW-----ATTNTLDFFDVSANPPGK  177 (208)
T ss_dssp             TSCCEEEEEEECC-------CCCHHHHHHH-----HHHTTCEEEECCC-----
T ss_pred             ccCCcEEEEEECcccchhhccCCHHHHHHH-----HHHcCCEEEEeccCCCCc
Confidence            25789999999999975   2222332222     223457899999998 63

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.85  E-value=5.3e-22  Score=124.38  Aligned_cols=115  Identities=16%  Similarity=0.182  Sum_probs=85.8

Q ss_pred             cCCccC--ceEEEEEEC--CEEEEEEEcCCCcchHH-HHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           7 TSPTIG--SNVEEVIWK--NIHFIMWDLGGQQSLRA-AWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         7 ~~pTi~--~~~~~~~~~--~~~~~i~Dt~G~~~~~~-~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      +.||++  .....+.++  .+.+.+|||+|++.+.. ++..+++.++++++|+|++++.+++.+..|+..+.......++
T Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~  131 (195)
T 3cbq_A           52 HEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDL  131 (195)
T ss_dssp             GTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCC
T ss_pred             CCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence            446655  445556664  46789999999988765 7888899999999999999999999999988877654333579


Q ss_pred             eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+...  ...++...     +++..+++++++||++|.
T Consensus       132 piilv~nK~Dl~~~~~v~~~~~~~-----~a~~~~~~~~e~Sa~~~~  173 (195)
T 3cbq_A          132 PVILVGNKSDLARSREVSLEEGRH-----LAGTLSCKHIETSAALHH  173 (195)
T ss_dssp             CEEEEEECTTCTTTCCSCHHHHHH-----HHHHTTCEEEEEBTTTTB
T ss_pred             CEEEEeechhccccCCcCHHHHHH-----HHHHhCCEEEEEcCCCCC
Confidence            99999999999753  22223221     222335689999999873

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.85  E-value=2.5e-22  Score=126.12  Aligned_cols=115  Identities=16%  Similarity=0.169  Sum_probs=85.9

Q ss_pred             ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           6 HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         6 ~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      .+.||++... ..+.+  ....+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+.......++|
T Consensus        52 ~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p  131 (201)
T 3oes_A           52 GYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVP  131 (201)
T ss_dssp             CCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCC
T ss_pred             CCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            6778888554 33333  66889999999999999999999999999999999999999999999988887765556899


Q ss_pred             EEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          83 VLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        83 iilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      +++++||+|+...  ....+..     .+....+++++++||++|
T Consensus       132 iilv~nK~Dl~~~~~v~~~~~~-----~~~~~~~~~~~~~Sa~~~  171 (201)
T 3oes_A          132 VVLVGNKADLSPEREVQAVEGK-----KLAESWGATFMESSAREN  171 (201)
T ss_dssp             EEEEEECTTCGGGCCSCHHHHH-----HHHHHHTCEEEECCTTCH
T ss_pred             EEEEEECccCccccccCHHHHH-----HHHHHhCCeEEEEeCCCC
Confidence            9999999998643  2222221     112233568999999986

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.85  E-value=1.9e-22  Score=122.73  Aligned_cols=116  Identities=17%  Similarity=0.212  Sum_probs=88.6

Q ss_pred             ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           6 HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         6 ~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      .+.||++... ..+.+  +...+.+|||||++.+...+..+++.++++++|+|++++.+++.+..|+..+.+.....+.|
T Consensus        31 ~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p  110 (167)
T 1c1y_A           31 KYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVP  110 (167)
T ss_dssp             SCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCC
T ss_pred             CCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCc
Confidence            6788988544 33444  45789999999999999999999999999999999999999999888887776543336899


Q ss_pred             EEEEEecCCCCCC--CCHHHHHhhcCcCcccC-CceEEEEeeeeeCC
Q psy6566          83 VLIYANKQDIKNS--MSPVEISNLLDLTSIKK-QQWHIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~~--~~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~  126 (126)
                      +++++||+|+.+.  ...++....     .+. .+.+++++||++|.
T Consensus       111 iilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~  152 (167)
T 1c1y_A          111 MILVGNKCDLEDERVVGKEQGQNL-----ARQWCNCAFLESSAKSKI  152 (167)
T ss_dssp             EEEEEECTTCGGGCCSCHHHHHHH-----HHHTTSCEEEECBTTTTB
T ss_pred             EEEEEECccccccccCCHHHHHHH-----HHHccCCcEEEecCCCCC
Confidence            9999999999653  222222221     112 25689999999873

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.85  E-value=5.7e-22  Score=121.53  Aligned_cols=117  Identities=10%  Similarity=0.088  Sum_probs=78.9

Q ss_pred             cccCCccCce--EEEEEECC--EEEEEEEcCCCcc--hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566           5 VHTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQS--LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL   78 (126)
Q Consensus         5 ~~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~--~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~   78 (126)
                      ....||+|..  ...+.+++  ..+.+|||+|++.  +..+...+++.++++++|+|++++.+++.+..|+..+.+....
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~  109 (175)
T 2nzj_A           30 RDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQA  109 (175)
T ss_dssp             ---CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC--
T ss_pred             ccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcc
Confidence            3445677744  45566644  5889999999988  5667788899999999999999999999999888877665434


Q ss_pred             CCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          79 SKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        79 ~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .++|+++++||+|+...  ...++...     +....+++++++||++|+
T Consensus       110 ~~~piilv~NK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~~~Sa~~g~  154 (175)
T 2nzj_A          110 DHVPIILVGNKADLARCREVSVEEGRA-----CAVVFDCKFIETSATLQH  154 (175)
T ss_dssp             --CCEEEEEECTTCTTTCCSCHHHHHH-----HHHHHTSEEEECBTTTTB
T ss_pred             CCCCEEEEEEChhhccccccCHHHHHH-----HHHHcCCeEEEEecCCCC
Confidence            68999999999999753  22222211     122235689999999873

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.85  E-value=2.5e-22  Score=124.15  Aligned_cols=115  Identities=17%  Similarity=0.174  Sum_probs=87.9

Q ss_pred             ccCCccCce-EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           6 HTSPTIGSN-VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         6 ~~~pTi~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      .+.||++.. ...+.+++  ..+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+.+.....++|
T Consensus        46 ~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p  125 (183)
T 3kkq_A           46 DYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP  125 (183)
T ss_dssp             CCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCC
T ss_pred             CCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc
Confidence            678898844 44455544  567789999999999999999999999999999999999999998888776543346889


Q ss_pred             EEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeee-eC
Q psy6566          83 VLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCAL-TG  125 (126)
Q Consensus        83 iilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~-~~  125 (126)
                      +++++||+|+...  ...++...     +.+..+++++++||+ +|
T Consensus       126 ~ilv~nK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~~~Sa~~~~  166 (183)
T 3kkq_A          126 MILVANKVDLMHLRKVTRDQGKE-----MATKYNIPYIETSAKDPP  166 (183)
T ss_dssp             EEEEEECTTCSTTCCSCHHHHHH-----HHHHHTCCEEEEBCSSSC
T ss_pred             EEEEEECCCchhccCcCHHHHHH-----HHHHhCCeEEEeccCCCC
Confidence            9999999998752  22232221     122234679999999 76

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.85  E-value=4.1e-22  Score=122.75  Aligned_cols=115  Identities=19%  Similarity=0.297  Sum_probs=80.5

Q ss_pred             ccCCccCceEEE--EEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNVEE--VIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~~~--~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++.....  +.+++  ..+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+..... .+.
T Consensus        39 ~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~  117 (180)
T 2g6b_A           39 TFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDV  117 (180)
T ss_dssp             CCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTC
T ss_pred             CcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCC
Confidence            678999966543  45544  5899999999999999999999999999999999999999988888777655332 578


Q ss_pred             eEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+....  ..++...     +.+..+++++++||++|.
T Consensus       118 piilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~  159 (180)
T 2g6b_A          118 ALMLLGNKVDSAHERVVKREDGEK-----LAKEYGLPFMETSAKTGL  159 (180)
T ss_dssp             EEEEEEECCSTTSCCCSCHHHHHH-----HHHHHTCCEEECCTTTCT
T ss_pred             cEEEEEECcccCcccccCHHHHHH-----HHHHcCCeEEEEeCCCCC
Confidence            999999999997532  2222221     112234679999999874

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.85  E-value=9.4e-22  Score=119.98  Aligned_cols=115  Identities=23%  Similarity=0.346  Sum_probs=88.1

Q ss_pred             ccCCccCceE--EEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNV--EEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||+|...  ..+.+.  ...+.+|||||++.+...+..+++.++++++|+|++++.+++.+..|+..+... ..++.
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~  112 (170)
T 1z0j_A           34 NINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH-GPPSI  112 (170)
T ss_dssp             TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTS
T ss_pred             CCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCC
Confidence            6789999554  455553  478999999999999999999999999999999999999999988877766543 23689


Q ss_pred             eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+...  ...++...     +.+..+++++++||++|.
T Consensus       113 ~iilv~nK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~~~Sa~~~~  154 (170)
T 1z0j_A          113 VVAIAGNKCDLTDVREVMERDAKD-----YADSIHAIFVETSAKNAI  154 (170)
T ss_dssp             EEEEEEECTTCGGGCCSCHHHHHH-----HHHHTTCEEEECBTTTTB
T ss_pred             cEEEEEECCccccccccCHHHHHH-----HHHHcCCEEEEEeCCCCc
Confidence            99999999999652  22222221     122345789999999873

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.85  E-value=6.9e-22  Score=121.49  Aligned_cols=115  Identities=23%  Similarity=0.347  Sum_probs=88.4

Q ss_pred             ccCCccCce--EEEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSN--VEEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++..  ...+.+.  ...+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+..... .+.
T Consensus        43 ~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~  121 (179)
T 1z0f_A           43 DCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN-PNT  121 (179)
T ss_dssp             SCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTC
T ss_pred             CCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcC-CCC
Confidence            567888854  4555563  47899999999999999999999999999999999999999998888776654322 578


Q ss_pred             eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+...  ...++....     .+..+++++++||++|.
T Consensus       122 piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~  163 (179)
T 1z0f_A          122 VIILIGNKADLEAQRDVTYEEAKQF-----AEENGLLFLEASAKTGE  163 (179)
T ss_dssp             EEEEEEECTTCGGGCCSCHHHHHHH-----HHHTTCEEEECCTTTCT
T ss_pred             cEEEEEECcccccccccCHHHHHHH-----HHHcCCEEEEEeCCCCC
Confidence            99999999999642  222333222     22345689999999874

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.85  E-value=2.1e-22  Score=136.13  Aligned_cols=85  Identities=24%  Similarity=0.349  Sum_probs=71.6

Q ss_pred             CccCceEEEEEE------CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECC----------CcccHHHHHHHHHHH
Q psy6566           9 PTIGSNVEEVIW------KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDST----------DRERISLTKEELYKM   72 (126)
Q Consensus         9 pTi~~~~~~~~~------~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~----------~~~~~~~~~~~~~~~   72 (126)
                      +|+|+....+.+      +.+.+++|||+||++++.+|..|+++++++++|+|++          +.++++++..|+..+
T Consensus       163 ~T~Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i  242 (354)
T 2xtz_A          163 RTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV  242 (354)
T ss_dssp             CCCSEEEEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHH
T ss_pred             cccceeeEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHH
Confidence            344555555666      3589999999999999999999999999999999998          788999999999999


Q ss_pred             hCCCCCCCCeEEEEEecCCCC
Q psy6566          73 LNHEDLSKAAVLIYANKQDIK   93 (126)
Q Consensus        73 ~~~~~~~~~piilv~nK~D~~   93 (126)
                      ......++.|+++++||+|+.
T Consensus       243 ~~~~~~~~~piiLvgNK~DL~  263 (354)
T 2xtz_A          243 LKQPCFEKTSFMLFLNKFDIF  263 (354)
T ss_dssp             HTCGGGSSCEEEEEEECHHHH
T ss_pred             HhccccCCCeEEEEEECcchh
Confidence            876555789999999999974

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.85  E-value=7.5e-22  Score=122.70  Aligned_cols=116  Identities=18%  Similarity=0.318  Sum_probs=89.4

Q ss_pred             ccCCccCceEE---EEEEC-----------CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHH
Q psy6566           6 HTSPTIGSNVE---EVIWK-----------NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYK   71 (126)
Q Consensus         6 ~~~pTi~~~~~---~~~~~-----------~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~   71 (126)
                      .+.||++....   .+.+.           ...+.+|||||++.+...+..+++.++++++|+|++++.++..+..|+..
T Consensus        39 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~  118 (195)
T 3bc1_A           39 KFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQ  118 (195)
T ss_dssp             SCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHH
T ss_pred             CcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHH
Confidence            67899996654   44443           46999999999999999999999999999999999999999998888877


Q ss_pred             HhCCCCCCCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          72 MLNHEDLSKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        72 ~~~~~~~~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +.......++|+++++||+|+...  ...+++...     ....+++++++||++|.
T Consensus       119 i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~  170 (195)
T 3bc1_A          119 LQMHAYSENPDIVLCGNKSDLEDQRAVKEEEAREL-----AEKYGIPYFETSAANGT  170 (195)
T ss_dssp             HHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHH-----HHHHTCCEEECCTTTCT
T ss_pred             HHHhcCCCCCCEEEEEECcccccccccCHHHHHHH-----HHHcCCCEEEEECCCCC
Confidence            765443357899999999999652  222332221     12234579999999874

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.85  E-value=2.8e-22  Score=127.18  Aligned_cols=116  Identities=17%  Similarity=0.359  Sum_probs=88.9

Q ss_pred             ccCCccCceE--EEEEEC------------CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHH
Q psy6566           6 HTSPTIGSNV--EEVIWK------------NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYK   71 (126)
Q Consensus         6 ~~~pTi~~~~--~~~~~~------------~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~   71 (126)
                      .+.||++...  ..+.+.            ...+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..
T Consensus        53 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~  132 (217)
T 2f7s_A           53 KFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQ  132 (217)
T ss_dssp             EEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHT
T ss_pred             CCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHH
Confidence            5678888544  445553            57899999999999999999999999999999999999999999888877


Q ss_pred             HhCCCCCCCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          72 MLNHEDLSKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        72 ~~~~~~~~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +.......++|+++++||+|+...  ....+....     .+..+++++++||++|+
T Consensus       133 i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~g~  184 (217)
T 2f7s_A          133 LQANAYCENPDIVLIGNKADLPDQREVNERQAREL-----ADKYGIPYFETSAATGQ  184 (217)
T ss_dssp             CCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHH-----HHHTTCCEEEEBTTTTB
T ss_pred             HHHhcCcCCCCEEEEEECCccccccccCHHHHHHH-----HHHCCCcEEEEECCCCC
Confidence            655443367999999999999652  222222221     22335679999999873

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.85  E-value=8.4e-22  Score=125.01  Aligned_cols=118  Identities=12%  Similarity=0.108  Sum_probs=83.5

Q ss_pred             CcccCCccCc--eEEEEEECC--EEEEEEEcCCCcc-hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566           4 VVHTSPTIGS--NVEEVIWKN--IHFIMWDLGGQQS-LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL   78 (126)
Q Consensus         4 ~~~~~pTi~~--~~~~~~~~~--~~~~i~Dt~G~~~-~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~   78 (126)
                      |....||+|.  ..+.+.+++  +.+.+|||+|++. +..+...+++.++++++|||++++++|+.+..|+..+.+....
T Consensus        64 ~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~  143 (211)
T 2g3y_A           64 MDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT  143 (211)
T ss_dssp             TCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGG
T ss_pred             CCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC
Confidence            3444456764  345666654  5678999999987 5667788899999999999999999999999888777654333


Q ss_pred             CCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          79 SKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        79 ~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .++|+++|+||+|+...  ...++.     ..++...++++++|||++|+
T Consensus       144 ~~~piilVgNK~DL~~~r~v~~~e~-----~~~a~~~~~~~~e~SAk~g~  188 (211)
T 2g3y_A          144 EDIPIILVGNKSDLVRCREVSVSEG-----RACAVVFDCKFIETSAAVQH  188 (211)
T ss_dssp             TTSCEEEEEECTTCGGGCCSCHHHH-----HHHHHHHTCEEEECBTTTTB
T ss_pred             CCCcEEEEEEChHHhcCceEeHHHH-----HHHHHHcCCEEEEEeCCCCC
Confidence            57999999999999642  222211     11122335689999999874

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.85  E-value=3.6e-22  Score=121.42  Aligned_cols=116  Identities=20%  Similarity=0.257  Sum_probs=87.0

Q ss_pred             ccCCccCceE-EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           6 HTSPTIGSNV-EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         6 ~~~pTi~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      .+.||++... ..+.+.+  ..+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+.+.....+.|
T Consensus        32 ~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p  111 (168)
T 1u8z_A           32 DYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP  111 (168)
T ss_dssp             CCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSC
T ss_pred             CCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc
Confidence            6778888554 4456644  689999999999999999999999999999999999999999988888776654335799


Q ss_pred             EEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          83 VLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +++++||+|+...  ...++....     ....+++++++||++|.
T Consensus       112 iilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~  152 (168)
T 1u8z_A          112 FLLVGNKSDLEDKRQVSVEEAKNR-----ADQWNVNYVETSAKTRA  152 (168)
T ss_dssp             EEEEEECGGGGGGCCSCHHHHHHH-----HHHHTCEEEECCTTTCT
T ss_pred             EEEEEECccccccCccCHHHHHHH-----HHHcCCeEEEeCCCCCC
Confidence            9999999998652  222332222     12335689999999874

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.85  E-value=6e-22  Score=124.72  Aligned_cols=115  Identities=24%  Similarity=0.319  Sum_probs=88.7

Q ss_pred             ccCCccCceE--EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNV--EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++...  ..+.+++  +.+.+|||+|++.+...+..+++.++++++|+|++++.++..+..|+..+.... ..+.
T Consensus        36 ~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~  114 (206)
T 2bcg_Y           36 DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTV  114 (206)
T ss_dssp             TCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTC
T ss_pred             CCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCC
Confidence            6778888554  5566644  689999999999999999999999999999999999999999988877765432 2578


Q ss_pred             eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+...  ...++...     +....+++++++||++|+
T Consensus       115 piilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~g~  156 (206)
T 2bcg_Y          115 LKLLVGNKCDLKDKRVVEYDVAKE-----FADANKMPFLETSALDST  156 (206)
T ss_dssp             EEEEEEECTTCTTTCCSCHHHHHH-----HHHHTTCCEEECCTTTCT
T ss_pred             CEEEEEECCCCccccccCHHHHHH-----HHHHcCCeEEEEeCCCCC
Confidence            99999999999763  22222222     122345689999999874

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.85  E-value=3.1e-22  Score=121.60  Aligned_cols=115  Identities=17%  Similarity=0.191  Sum_probs=88.2

Q ss_pred             ccCCccCc-eEEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           6 HTSPTIGS-NVEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         6 ~~~pTi~~-~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      .+.||++. ....+.+.+  ..+.+|||||++.+...+..+++.++++++|+|++++.+++.+..|+..+.+.....+.|
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p  110 (167)
T 1kao_A           31 KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVP  110 (167)
T ss_dssp             CCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCC
T ss_pred             cCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            57788883 345666644  569999999999999999999999999999999999999999998888877654446899


Q ss_pred             EEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          83 VLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        83 iilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      +++++||+|+...  ....+...     .....+++++++||++|
T Consensus       111 iilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~  150 (167)
T 1kao_A          111 VILVGNKVDLESEREVSSSEGRA-----LAEEWGCPFMETSAKSK  150 (167)
T ss_dssp             EEEEEECGGGGGGCCSCHHHHHH-----HHHHHTSCEEEECTTCH
T ss_pred             EEEEEECCcccccccCCHHHHHH-----HHHHhCCCEEEecCCCC
Confidence            9999999998642  22222211     11223457999999986

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.85  E-value=9.8e-22  Score=123.47  Aligned_cols=116  Identities=20%  Similarity=0.256  Sum_probs=90.6

Q ss_pred             ccCCccCce-EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           6 HTSPTIGSN-VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         6 ~~~pTi~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      .+.||++.. ...+.+++  +.+.+|||+|++.+...+..+++.++++++|+|++++.++..+..|+..+.......++|
T Consensus        42 ~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p  121 (206)
T 2bov_A           42 DYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP  121 (206)
T ss_dssp             TCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC
T ss_pred             CCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            678888844 35566644  589999999999999999999999999999999999999999988888877654335899


Q ss_pred             EEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          83 VLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +++++||+|+...  ....++...     ....+++++++||++|.
T Consensus       122 iilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~g~  162 (206)
T 2bov_A          122 FLLVGNKSDLEDKRQVSVEEAKNR-----AEQWNVNYVETSAKTRA  162 (206)
T ss_dssp             EEEEEECTTCGGGCCSCHHHHHHH-----HHHHTCEEEEECTTTCT
T ss_pred             EEEEEeccCccccccccHHHHHHH-----HHHhCCeEEEEeCCCCC
Confidence            9999999999652  223333222     12335689999999874

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.85  E-value=3.2e-22  Score=123.04  Aligned_cols=116  Identities=19%  Similarity=0.288  Sum_probs=86.3

Q ss_pred             ccCCccC--ceEEEEEECC---EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC-CC
Q psy6566           6 HTSPTIG--SNVEEVIWKN---IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED-LS   79 (126)
Q Consensus         6 ~~~pTi~--~~~~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~-~~   79 (126)
                      .+.||++  +....+.+.+   ..+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+..... ..
T Consensus        34 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~  113 (178)
T 2hxs_A           34 QYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESE  113 (178)
T ss_dssp             HHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHT
T ss_pred             CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccC
Confidence            5678988  4556677754   8999999999999999999999999999999999999999888877766644210 01


Q ss_pred             CCe-EEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          80 KAA-VLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        80 ~~p-iilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +.| +++++||+|+...  ...++....     .+..+++++++||++|+
T Consensus       114 ~~~~iilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~  158 (178)
T 2hxs_A          114 TQPLVALVGNKIDLEHMRTIKPEKHLRF-----CQENGFSSHFVSAKTGD  158 (178)
T ss_dssp             CCCEEEEEEECGGGGGGCSSCHHHHHHH-----HHHHTCEEEEECTTTCT
T ss_pred             CCCeEEEEEEccccccccccCHHHHHHH-----HHHcCCcEEEEeCCCCC
Confidence            344 8999999998652  222222221     12335689999999874

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.85  E-value=1e-21  Score=122.43  Aligned_cols=115  Identities=22%  Similarity=0.345  Sum_probs=89.1

Q ss_pred             ccCCccCceE--EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNV--EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||+|...  ..+.+  ....+.+|||+|++.+...+..+++.++++++|+|++++.++..+..|+..+.... ..+.
T Consensus        53 ~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~  131 (193)
T 2oil_A           53 DSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA-EATI  131 (193)
T ss_dssp             SCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTS-CTTC
T ss_pred             CCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCC
Confidence            5778988554  44555  45789999999999999999999999999999999999999999888887776543 3679


Q ss_pred             eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+...  ....+...     +....+++++++||++|.
T Consensus       132 piilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~  173 (193)
T 2oil_A          132 VVMLVGNKSDLSQAREVPTEEARM-----FAENNGLLFLETSALDST  173 (193)
T ss_dssp             EEEEEEECGGGGGGCCSCHHHHHH-----HHHHTTCEEEEECTTTCT
T ss_pred             eEEEEEECCCcccccccCHHHHHH-----HHHHcCCEEEEEeCCCCC
Confidence            99999999998652  22222222     122345789999999874

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.85  E-value=1.3e-22  Score=126.43  Aligned_cols=115  Identities=19%  Similarity=0.287  Sum_probs=88.2

Q ss_pred             ccCCccCceE--EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNV--EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++...  ..+.+  +.+.+.+|||+|++.+..++..+++.++++++|+|++++.+++.+..|+..+... ...+.
T Consensus        51 ~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~  129 (191)
T 3dz8_A           51 AFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTY-SWDNA  129 (191)
T ss_dssp             CEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTC
T ss_pred             ccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCC
Confidence            5668888444  44444  6789999999999999999999999999999999999999999998887776553 23679


Q ss_pred             eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+.+.  ....+...     +....+++++++||++|.
T Consensus       130 piilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~  171 (191)
T 3dz8_A          130 QVILVGNKCDMEEERVVPTEKGQL-----LAEQLGFDFFEASAKENI  171 (191)
T ss_dssp             EEEEEEECTTCGGGCCSCHHHHHH-----HHHHHTCEEEECBTTTTB
T ss_pred             CEEEEEECCCCccccccCHHHHHH-----HHHHcCCeEEEEECCCCC
Confidence            99999999998643  22222211     122335689999999873

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.85  E-value=4.4e-22  Score=124.08  Aligned_cols=115  Identities=24%  Similarity=0.309  Sum_probs=84.9

Q ss_pred             ccCCccCce--EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++..  ...+.+++  +.+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+.... ..+.
T Consensus        49 ~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~  127 (191)
T 2a5j_A           49 VHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-SSNM  127 (191)
T ss_dssp             -----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTC
T ss_pred             CCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCC
Confidence            567888844  45666644  789999999999999999999999999999999999999999988887775532 2579


Q ss_pred             eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+...  ...++...     ++...+++++++||++|+
T Consensus       128 piilv~nK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~~~Sa~~~~  169 (191)
T 2a5j_A          128 VIMLIGNKSDLESRRDVKREEGEA-----FAREHGLIFMETSAKTAC  169 (191)
T ss_dssp             EEEEEEECTTCGGGCCSCHHHHHH-----HHHHHTCEEEEECTTTCT
T ss_pred             CEEEEEECcccCCccccCHHHHHH-----HHHHcCCEEEEEeCCCCC
Confidence            99999999999642  22222222     122345689999999874

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.85  E-value=3.4e-21  Score=118.60  Aligned_cols=115  Identities=11%  Similarity=0.103  Sum_probs=81.4

Q ss_pred             CCcccCCccCce-EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhC--CCC
Q psy6566           3 EVVHTSPTIGSN-VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLN--HED   77 (126)
Q Consensus         3 ~~~~~~pTi~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~--~~~   77 (126)
                      .+..+.||++.. ...+.+++  +.+.+|||+|+++     ..++++++++++|+|++++++++.+..|+..+..  ...
T Consensus        31 ~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~  105 (178)
T 2iwr_A           31 SYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEG  105 (178)
T ss_dssp             CCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSS
T ss_pred             CCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcC
Confidence            455688999944 45666644  6789999999987     3478889999999999999999999886433322  222


Q ss_pred             CCCCeEEEEEecCCCCC----CCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          78 LSKAAVLIYANKQDIKN----SMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .+++|+++++||+|+..    ....++......    ...+++++++||++|.
T Consensus       106 ~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~~~  154 (178)
T 2iwr_A          106 RGGLALALVGTQDRISASSPRVVGDARARALXA----DMKRCSYYETXATYGL  154 (178)
T ss_dssp             SCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHH----HHSSEEEEEEBTTTTB
T ss_pred             CCCCCEEEEEECccccccccCcCCHHHHHHHHH----hhcCCeEEEEeccccC
Confidence            35799999999999842    222233222111    1135789999999873

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.85  E-value=5.4e-22  Score=121.15  Aligned_cols=115  Identities=21%  Similarity=0.285  Sum_probs=81.0

Q ss_pred             ccCCccCceE--EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNV--EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++...  ..+.+  ..+.+.+|||||++.+...+..+++.++++++|+|++++.+++.+..|+..+.... ..+.
T Consensus        34 ~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~  112 (170)
T 1z08_A           34 KHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML-GNEI  112 (170)
T ss_dssp             SCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-GGGS
T ss_pred             CCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCC
Confidence            6779999655  44555  34689999999999999999999999999999999999999999988877654422 2468


Q ss_pred             eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+...  ...++...     +++..+++++++||++|.
T Consensus       113 piilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~  154 (170)
T 1z08_A          113 CLCIVGNKIDLEKERHVSIQEAES-----YAESVGAKHYHTSAKQNK  154 (170)
T ss_dssp             EEEEEEECGGGGGGCCSCHHHHHH-----HHHHTTCEEEEEBTTTTB
T ss_pred             eEEEEEECcccccccccCHHHHHH-----HHHHcCCeEEEecCCCCC
Confidence            99999999998652  22233222     122345789999999873

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.84  E-value=4.7e-22  Score=126.82  Aligned_cols=115  Identities=23%  Similarity=0.298  Sum_probs=81.4

Q ss_pred             ccCCccCce--EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++..  ...+.+++  +.+.+|||+|++.+..++..+++.++++++|+|++++.+++.+..|+..+.... ..++
T Consensus        41 ~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~  119 (223)
T 3cpj_B           41 DSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENA-DDNV  119 (223)
T ss_dssp             ------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHC-C--C
T ss_pred             CCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCC
Confidence            567888844  45566655  789999999999999999999999999999999999999999988887765432 2578


Q ss_pred             eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++|+||+|+...  ....+...     +....+++++++||++|+
T Consensus       120 piilv~nK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~~~Sa~~~~  161 (223)
T 3cpj_B          120 AVGLIGNKSDLAHLRAVPTEESKT-----FAQENQLLFTETSALNSE  161 (223)
T ss_dssp             EEEEEECCGGGGGGCCSCHHHHHH-----HHHHTTCEEEECCCC-CC
T ss_pred             eEEEEEECcccccccccCHHHHHH-----HHHHcCCEEEEEeCCCCC
Confidence            99999999998642  22222222     222345789999999874

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.84  E-value=5.1e-22  Score=122.25  Aligned_cols=114  Identities=23%  Similarity=0.275  Sum_probs=88.3

Q ss_pred             ccCCccCce--EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++..  ...+.+.+  ..+.+|||||++.+...+..+++.+|++++|+|++++.++..+..|+..+....  ++.
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~  114 (181)
T 3tw8_B           37 SYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC--DDV  114 (181)
T ss_dssp             CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC--TTS
T ss_pred             ccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCC
Confidence            677888844  45566666  789999999999999999999999999999999999999999988887776543  579


Q ss_pred             eEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+....  ...+...     +....+++++++||++|.
T Consensus       115 p~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~  156 (181)
T 3tw8_B          115 CRILVGNKNDDPERKVVETEDAYK-----FAGQMGIQLFETSAKENV  156 (181)
T ss_dssp             EEEEEEECTTCGGGCCSCHHHHHH-----HHHHHTCCEEECBTTTTB
T ss_pred             CEEEEEECCCCchhcccCHHHHHH-----HHHHcCCeEEEEECCCCC
Confidence            999999999986532  2222211     112234579999999873

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.84  E-value=3.8e-22  Score=121.80  Aligned_cols=113  Identities=16%  Similarity=0.166  Sum_probs=79.5

Q ss_pred             CccCceEEEEEEC--CEEEEEEEcCCCcchHH-HHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEE
Q psy6566           9 PTIGSNVEEVIWK--NIHFIMWDLGGQQSLRA-AWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLI   85 (126)
Q Consensus         9 pTi~~~~~~~~~~--~~~~~i~Dt~G~~~~~~-~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piil   85 (126)
                      +|.......+.++  ...+.+|||+|++.+.. ++..+++.++++++|+|++++++++.+..|+..+.......++|+++
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~il  114 (169)
T 3q85_A           35 NSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL  114 (169)
T ss_dssp             ---CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEE
T ss_pred             CcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEE
Confidence            4444566667774  46889999999999876 77778899999999999999999999999998887755445899999


Q ss_pred             EEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          86 YANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        86 v~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ++||+|+.+.  ...++..     .+.+..+++++++||++|+
T Consensus       115 v~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~  152 (169)
T 3q85_A          115 VGNKSDLARSREVSLEEGR-----HLAGTLSCKHIETSAALHH  152 (169)
T ss_dssp             EEECTTCGGGCCSCHHHHH-----HHHHHTTCEEEECBTTTTB
T ss_pred             EeeCcchhhcccCCHHHHH-----HHHHHcCCcEEEecCccCC
Confidence            9999998642  2222222     1223346689999999873

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.84  E-value=3.3e-20  Score=117.34  Aligned_cols=95  Identities=25%  Similarity=0.298  Sum_probs=72.5

Q ss_pred             CCcccCCccCceEEEEEEC---CEEEEEEEcCCCcchHH-HHHhhccCCcEEEEEEECCCcc-cHHHHHHHHHHHhCC--
Q psy6566           3 EVVHTSPTIGSNVEEVIWK---NIHFIMWDLGGQQSLRA-AWSTYYTNTEFVILVIDSTDRE-RISLTKEELYKMLNH--   75 (126)
Q Consensus         3 ~~~~~~pTi~~~~~~~~~~---~~~~~i~Dt~G~~~~~~-~~~~~~~~~~~~l~v~d~~~~~-~~~~~~~~~~~~~~~--   75 (126)
                      .+....||++.....+.++   ++.+.+|||||++.+.. ++..+++.++++++|+|+++.. ++.....+|...+..  
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  110 (214)
T 2fh5_B           31 QYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSM  110 (214)
T ss_dssp             CCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhh
Confidence            3444446666666667774   78999999999999998 8899999999999999998853 466666666665432  


Q ss_pred             CCCCCCeEEEEEecCCCCCCCC
Q psy6566          76 EDLSKAAVLIYANKQDIKNSMS   97 (126)
Q Consensus        76 ~~~~~~piilv~nK~D~~~~~~   97 (126)
                      ....++|+++++||+|+.....
T Consensus       111 ~~~~~~piilv~nK~Dl~~~~~  132 (214)
T 2fh5_B          111 ALKNSPSLLIACNKQDIAMAKS  132 (214)
T ss_dssp             TSTTCCEEEEEEECTTSTTCCC
T ss_pred             hcccCCCEEEEEECCCCCCccc
Confidence            1125789999999999986543

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.84  E-value=7.6e-22  Score=122.76  Aligned_cols=115  Identities=18%  Similarity=0.297  Sum_probs=87.7

Q ss_pred             ccCCccCceE--EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNV--EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++...  ..+.+  +...+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+.... ..+.
T Consensus        50 ~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~  128 (189)
T 2gf9_A           50 AFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS-WDNA  128 (189)
T ss_dssp             SCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTC
T ss_pred             CcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCC
Confidence            6778988554  44555  35789999999999999999999999999999999999999999888877765432 3578


Q ss_pred             eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+...  ...++...     +.+..+++++++||++|.
T Consensus       129 piilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~g~  170 (189)
T 2gf9_A          129 QVILVGNKCDLEDERVVPAEDGRR-----LADDLGFEFFEASAKENI  170 (189)
T ss_dssp             EEEEEEECTTCGGGCCSCHHHHHH-----HHHHHTCEEEECBTTTTB
T ss_pred             CEEEEEECcccccccCCCHHHHHH-----HHHHcCCeEEEEECCCCC
Confidence            99999999998652  22222221     112235689999999873

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.84  E-value=1.1e-21  Score=121.32  Aligned_cols=116  Identities=20%  Similarity=0.259  Sum_probs=90.2

Q ss_pred             ccCCccCceE-EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           6 HTSPTIGSNV-EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         6 ~~~pTi~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      .+.||++... ..+.+.+  ..+.+|||+|++.+...+..+++.++++++|+|++++.++..+..|+..+.......++|
T Consensus        46 ~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p  125 (187)
T 2a9k_A           46 DYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP  125 (187)
T ss_dssp             SCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCC
T ss_pred             cCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            6778888544 4456644  689999999999999999999999999999999999999999988888776654335799


Q ss_pred             EEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          83 VLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +++++||+|+...  ....+....     .+..+++++++||++|.
T Consensus       126 iilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~  166 (187)
T 2a9k_A          126 FLLVGNKSDLEDKRQVSVEEAKNR-----AEQWNVNYVETSAKTRA  166 (187)
T ss_dssp             EEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEECCTTTCT
T ss_pred             EEEEEECccccccCccCHHHHHHH-----HHHcCCeEEEeCCCCCC
Confidence            9999999998652  222333222     22345689999999874

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.84  E-value=4.5e-22  Score=122.51  Aligned_cols=116  Identities=18%  Similarity=0.186  Sum_probs=89.8

Q ss_pred             ccCCccCceE-EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           6 HTSPTIGSNV-EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         6 ~~~pTi~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      .+.||++... ..+.+++  ..+.+|||+|++.+...+..+++.++++++|+|++++.++..+..|+..+++.....+.|
T Consensus        37 ~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p  116 (181)
T 2fn4_A           37 DYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFP  116 (181)
T ss_dssp             SCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCC
T ss_pred             ccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            6789998554 4455654  689999999999999999999999999999999999999999998888876543346789


Q ss_pred             EEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          83 VLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +++++||+|+...  ....+...     +....+++++++||++|.
T Consensus       117 iilv~nK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~~~Sa~~~~  157 (181)
T 2fn4_A          117 VVLVGNKADLESQRQVPRSEASA-----FGASHHVAYFEASAKLRL  157 (181)
T ss_dssp             EEEEEECGGGGGGCCSCHHHHHH-----HHHHTTCEEEECBTTTTB
T ss_pred             EEEEEECcccccccccCHHHHHH-----HHHHcCCeEEEecCCCCC
Confidence            9999999998652  22222221     122346789999999873

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.84  E-value=5.8e-22  Score=123.75  Aligned_cols=115  Identities=16%  Similarity=0.254  Sum_probs=83.8

Q ss_pred             ccCCccCceE-EEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           6 HTSPTIGSNV-EEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         6 ~~~pTi~~~~-~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      .+.||++... ..+.++  .+.+.+|||+|++.+...+..+++.++++++|+|++++.++..+...|...++.. ..++|
T Consensus        51 ~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p  129 (194)
T 3reg_A           51 AYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY-IDTAK  129 (194)
T ss_dssp             SCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-CTTSE
T ss_pred             ccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCC
Confidence            6789999554 344454  4667999999999999999999999999999999999999999744344433332 26799


Q ss_pred             EEEEEecCCCCCC----CCHHHHHhhcCcCcccCCceE-EEEeeeeeCC
Q psy6566          83 VLIYANKQDIKNS----MSPVEISNLLDLTSIKKQQWH-IQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~~----~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~  126 (126)
                      +++|+||+|+...    ...++...     +++..++. ++++||++|+
T Consensus       130 ~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~  173 (194)
T 3reg_A          130 TVLVGLKVDLRKDGSDDVTKQEGDD-----LCQKLGCVAYIEASSVAKI  173 (194)
T ss_dssp             EEEEEECGGGCCTTTTCCCHHHHHH-----HHHHHTCSCEEECBTTTTB
T ss_pred             EEEEEEChhhccCCCCcccHHHHHH-----HHHhcCCCEEEEeecCCCC
Confidence            9999999998642    22222221     11223344 9999999874

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.84  E-value=4.7e-21  Score=117.70  Aligned_cols=117  Identities=16%  Similarity=0.275  Sum_probs=85.5

Q ss_pred             ccCCccCceE--EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC---CC
Q psy6566           6 HTSPTIGSNV--EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE---DL   78 (126)
Q Consensus         6 ~~~pTi~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~---~~   78 (126)
                      .+.||++...  ..+.+++  ..+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+....   ..
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~  114 (177)
T 1wms_A           35 QLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEP  114 (177)
T ss_dssp             ----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCT
T ss_pred             CCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHcccccc
Confidence            6778998554  5555654  689999999999999999999999999999999999999988887776664321   22


Q ss_pred             CCCeEEEEEecCCCCC-CCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          79 SKAAVLIYANKQDIKN-SMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        79 ~~~piilv~nK~D~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .++|+++++||+|+.. ....++......    ....++++++||++|.
T Consensus       115 ~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~  159 (177)
T 1wms_A          115 ESFPFVILGNKIDISERQVSTEEAQAWCR----DNGDYPYFETSAKDAT  159 (177)
T ss_dssp             TTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTCCCEEECCTTTCT
T ss_pred             CCCcEEEEEECCcccccccCHHHHHHHHH----hcCCceEEEEeCCCCC
Confidence            5789999999999963 233333322211    1345679999999874

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.84  E-value=1.3e-21  Score=122.23  Aligned_cols=115  Identities=20%  Similarity=0.304  Sum_probs=85.1

Q ss_pred             ccCCccCce--EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++..  ...+.+++  +.+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+... ...++
T Consensus        54 ~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~-~~~~~  132 (192)
T 2il1_A           54 ACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKY-ASEDA  132 (192)
T ss_dssp             ---CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTC
T ss_pred             CCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCC
Confidence            567888844  45566644  68999999999999999999999999999999999999999888776655432 23579


Q ss_pred             eEEEEEecCCCCCC--CCHHHHHhhcCcCcccC-CceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKK-QQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+...  ...++....     .+. .+++++++||++|+
T Consensus       133 piilV~NK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~~SA~~g~  175 (192)
T 2il1_A          133 ELLLVGNKLDCETDREITRQQGEKF-----AQQITGMRFCEASAKDNF  175 (192)
T ss_dssp             EEEEEEECGGGGGGCCSCHHHHHHH-----HHTSTTCEEEECBTTTTB
T ss_pred             cEEEEEECcccccccccCHHHHHHH-----HHhcCCCeEEEEeCCCCC
Confidence            99999999998642  222222221     122 36789999999873

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.84  E-value=7.8e-22  Score=123.10  Aligned_cols=88  Identities=14%  Similarity=0.207  Sum_probs=72.6

Q ss_pred             ccCCccCceE-EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNV-EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK-EELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~   81 (126)
                      .+.||++... ..+.+++  +.+.+|||+|++++...+..+++.++++++|+|++++.++..+. .|+..+....  +++
T Consensus        46 ~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~  123 (194)
T 2atx_A           46 EYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA--PNV  123 (194)
T ss_dssp             SCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTC
T ss_pred             CCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCC
Confidence            6789998544 4555544  78999999999999999999999999999999999999999987 5655554432  579


Q ss_pred             eEEEEEecCCCCCC
Q psy6566          82 AVLIYANKQDIKNS   95 (126)
Q Consensus        82 piilv~nK~D~~~~   95 (126)
                      |+++++||+|+...
T Consensus       124 piilv~nK~Dl~~~  137 (194)
T 2atx_A          124 PFLLIGTQIDLRDD  137 (194)
T ss_dssp             CEEEEEECTTSTTC
T ss_pred             CEEEEEEChhhccc
Confidence            99999999999753

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.84  E-value=4.7e-22  Score=123.42  Aligned_cols=118  Identities=14%  Similarity=0.288  Sum_probs=81.4

Q ss_pred             ccCCccCceEEEEEE-------CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCc-ccHHHHHHHHHHHhCCCC
Q psy6566           6 HTSPTIGSNVEEVIW-------KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR-ERISLTKEELYKMLNHED   77 (126)
Q Consensus         6 ~~~pTi~~~~~~~~~-------~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~-~~~~~~~~~~~~~~~~~~   77 (126)
                      .+.||+|.......+       +.+.+.+|||+|++.+..+++.++++++++++|+|++++ .++..+..|+..+.... 
T Consensus        32 ~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-  110 (184)
T 2zej_A           32 MQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA-  110 (184)
T ss_dssp             -----CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC-
T ss_pred             CcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC-
Confidence            578999977655443       467899999999999999999999999999999999987 47888888887765432 


Q ss_pred             CCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCce----EEEEeeeeeC
Q psy6566          78 LSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQW----HIQSCCALTG  125 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~Sa~~~  125 (126)
                       ++.|+++++||+|+................+++..++    .++++||++|
T Consensus       111 -~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (184)
T 2zej_A          111 -SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEE  161 (184)
T ss_dssp             -TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSC
T ss_pred             -CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccC
Confidence             4789999999999875321111111122223333344    3999999987

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.84  E-value=1.3e-21  Score=121.26  Aligned_cols=116  Identities=16%  Similarity=0.180  Sum_probs=85.6

Q ss_pred             ccCCccC-ceEEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           6 HTSPTIG-SNVEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         6 ~~~pTi~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      .+.||++ .....+.+++  ..+.+|||||++.+..++..+++.++++++|+|++++.+++.+..|+..+.......+.|
T Consensus        32 ~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p  111 (189)
T 4dsu_A           32 EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVP  111 (189)
T ss_dssp             CCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC
T ss_pred             CCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc
Confidence            6677877 3345555644  568889999999999999999999999999999999999999998888877654446899


Q ss_pred             EEEEEecCCCCCCC-CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          83 VLIYANKQDIKNSM-SPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +++++||+|+.... ..+.....     ....+++++++||++|.
T Consensus       112 ~i~v~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~g~  151 (189)
T 4dsu_A          112 MVLVGNKCDLPSRTVDTKQAQDL-----ARSYGIPFIETSAKTRQ  151 (189)
T ss_dssp             EEEEEECTTSSSCSSCHHHHHHH-----HHHHTCCEEECCTTTCT
T ss_pred             EEEEEECccCcccccCHHHHHHH-----HHHcCCeEEEEeCCCCC
Confidence            99999999997532 22222211     12234579999999874

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.84  E-value=3.5e-21  Score=122.16  Aligned_cols=115  Identities=25%  Similarity=0.351  Sum_probs=87.9

Q ss_pred             ccCCccCceEEEEEE---C-C-EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCC
Q psy6566           6 HTSPTIGSNVEEVIW---K-N-IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK   80 (126)
Q Consensus         6 ~~~pTi~~~~~~~~~---~-~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~   80 (126)
                      .+.||++.......+   . . +.+.+|||+|++.+...+..+++.+|++++|+|++++.+++.+..|+..+..... .+
T Consensus        39 ~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~  117 (218)
T 4djt_A           39 NYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVG-NE  117 (218)
T ss_dssp             EEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-SS
T ss_pred             CCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CC
Confidence            567899976666555   2 2 7899999999999999999999999999999999999999999887776654322 46


Q ss_pred             CeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          81 AAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        81 ~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .|+++|+||+|+...  ......     .......+++++++||++|.
T Consensus       118 ~piilv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~g~  160 (218)
T 4djt_A          118 APIVVCANKIDIKNRQKISKKLV-----MEVLKGKNYEYFEISAKTAH  160 (218)
T ss_dssp             SCEEEEEECTTCC----CCHHHH-----HHHTTTCCCEEEEEBTTTTB
T ss_pred             CCEEEEEECCCCccccccCHHHH-----HHHHHHcCCcEEEEecCCCC
Confidence            899999999999753  222222     22234456789999999873

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.84  E-value=1e-21  Score=124.17  Aligned_cols=114  Identities=13%  Similarity=0.223  Sum_probs=82.9

Q ss_pred             ccCCccCceE-EEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNV-EEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK-EELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~-~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~   81 (126)
                      .+.||++... ..+.++  .+.+.+|||+|++.+..++..+++.++++++|+|++++.+++.+. .|+..+....  ++.
T Consensus        37 ~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~  114 (212)
T 2j0v_A           37 DYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA--PNV  114 (212)
T ss_dssp             SCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTC
T ss_pred             cCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCC
Confidence            6789999544 445553  479999999999999999999999999999999999999999987 5555554322  479


Q ss_pred             eEEEEEecCCCCCCC----------CHHHHHhhcCcCcccCCc-eEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSM----------SPVEISNLLDLTSIKKQQ-WHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~----------~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+....          ...+..     .++...+ .+++++||++|+
T Consensus       115 piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~-----~~~~~~~~~~~~~~Sa~~g~  165 (212)
T 2j0v_A          115 PIVLVGTKLDLRDDKGYLADHTNVITSTQGE-----ELRKQIGAAAYIECSSKTQQ  165 (212)
T ss_dssp             CEEEEEECHHHHTCHHHHHTCSSCCCHHHHH-----HHHHHHTCSEEEECCTTTCT
T ss_pred             CEEEEEeCHHhhhCccccccccCCCCHHHHH-----HHHHHcCCceEEEccCCCCC
Confidence            999999999986531          111111     1122223 389999999874

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.83  E-value=5e-22  Score=124.81  Aligned_cols=115  Identities=25%  Similarity=0.365  Sum_probs=83.3

Q ss_pred             ccCCccCce--EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++..  ...+.+++  ..+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+..... .+.
T Consensus        53 ~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~  131 (200)
T 2o52_A           53 DSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS-PNI  131 (200)
T ss_dssp             -------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTC-TTC
T ss_pred             cCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCC
Confidence            567888844  45566655  7899999999999988899999999999999999999999999888877654322 679


Q ss_pred             eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+...  ....+...     ++...+++++++||++|.
T Consensus       132 piilv~nK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~~~SA~~g~  173 (200)
T 2o52_A          132 VVILCGNKKDLDPEREVTFLEASR-----FAQENELMFLETSALTGE  173 (200)
T ss_dssp             EEEEEEECGGGGGGCCSCHHHHHH-----HHHHTTCEEEEECTTTCT
T ss_pred             cEEEEEECCCcccccccCHHHHHH-----HHHHcCCEEEEEeCCCCC
Confidence            99999999998642  22222222     223346789999999874

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.83  E-value=3.7e-21  Score=122.39  Aligned_cols=114  Identities=19%  Similarity=0.319  Sum_probs=90.1

Q ss_pred             ccCCccCceEEEEEE----CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNVEEVIW----KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||+|.......+    +++.+.+|||+|++.+..++..+++.++++++|+|++++.++..+..|+..+.+..  +++
T Consensus        43 ~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~  120 (221)
T 3gj0_A           43 KYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENI  120 (221)
T ss_dssp             EEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--TTC
T ss_pred             CCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCC
Confidence            567999966655444    55789999999999999999999999999999999999999999988888776643  578


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++|+||+|+.+.....     ....+....+++++++||++|.
T Consensus       121 p~ilv~nK~Dl~~~~~~~-----~~~~~~~~~~~~~~~~Sa~~~~  160 (221)
T 3gj0_A          121 PIVLCGNKVDIKDRKVKA-----KSIVFHRKKNLQYYDISAKSNY  160 (221)
T ss_dssp             CEEEEEECTTSSSCSSCG-----GGCCHHHHHTCEEEECBGGGTB
T ss_pred             CEEEEEECCccccccccH-----HHHHHHHHcCCEEEEEeCCCCC
Confidence            999999999997632111     1122333456789999999873

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.83  E-value=9.7e-22  Score=120.82  Aligned_cols=115  Identities=19%  Similarity=0.316  Sum_probs=87.9

Q ss_pred             ccCCccCce--EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++..  ...+.+++  ..+.+|||+|++.+...+..+++.++++++|+|++++.++..+..|+..+.... ..++
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~  120 (179)
T 2y8e_A           42 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTER-GSDV  120 (179)
T ss_dssp             SCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSS
T ss_pred             CCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCC
Confidence            567888844  45566644  689999999999999999999999999999999999999999988887765432 2578


Q ss_pred             eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+...  ....+....     ....+++++++||++|.
T Consensus       121 piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~  162 (179)
T 2y8e_A          121 IIMLVGNKTDLSDKRQVSTEEGERK-----AKELNVMFIETSAKAGY  162 (179)
T ss_dssp             EEEEEEECGGGGGGCCSCHHHHHHH-----HHHHTCEEEEEBTTTTB
T ss_pred             cEEEEEECCcccccCcCCHHHHHHH-----HHHcCCeEEEEeCCCCC
Confidence            99999999998642  222222221     12235689999999873

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.83  E-value=6e-22  Score=123.27  Aligned_cols=114  Identities=15%  Similarity=0.157  Sum_probs=82.1

Q ss_pred             ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC--CCCC
Q psy6566           6 HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE--DLSK   80 (126)
Q Consensus         6 ~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~   80 (126)
                      .+.||++... ..+.+  +.+.+.+|||+|++.+..+ ..+++.++++++|+|++++++++.+..|+..+....  ...+
T Consensus        49 ~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~  127 (187)
T 3c5c_A           49 EYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRS  127 (187)
T ss_dssp             CCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             ccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCC
Confidence            6789999543 44555  4478999999999988775 568999999999999999999999998887775431  1147


Q ss_pred             CeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeee-eeC
Q psy6566          81 AAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCA-LTG  125 (126)
Q Consensus        81 ~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa-~~~  125 (126)
                      .|+++++||+|+...  ...++...     +++..+++++++|| ++|
T Consensus       128 ~piilv~nK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~e~Sa~~~g  170 (187)
T 3c5c_A          128 IPALLLGNKLDMAQYRQVTKAEGVA-----LAGRFGCLFFEVSACLDF  170 (187)
T ss_dssp             CCEEEEEECGGGGGGCSSCHHHHHH-----HHHHHTCEEEECCSSSCS
T ss_pred             CCEEEEEECcchhhcCccCHHHHHH-----HHHHcCCcEEEEeecCcc
Confidence            899999999998642  22222222     22233568999999 776

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.83  E-value=1e-21  Score=123.17  Aligned_cols=115  Identities=18%  Similarity=0.265  Sum_probs=78.6

Q ss_pred             ccCCccCce--EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||+|..  ...+.+++  ..+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+... ...++
T Consensus        56 ~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~  134 (199)
T 2p5s_A           56 NISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDA-AHETV  134 (199)
T ss_dssp             ---------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH-C---C
T ss_pred             cCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCC
Confidence            577888844  45666644  77999999999999999999999999999999999999999988877665432 22578


Q ss_pred             eEEEEEecCCCCC--------CCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKN--------SMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~--------~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+..        ....++..     .++...+++++++||++|.
T Consensus       135 piilv~NK~Dl~~~~~~~~~~~v~~~~~~-----~~~~~~~~~~~~~SA~~g~  182 (199)
T 2p5s_A          135 PIMLVGNKADIRDTAATEGQKCVPGHFGE-----KLAMTYGALFCETSAKDGS  182 (199)
T ss_dssp             CEEEEEECGGGHHHHHHTTCCCCCHHHHH-----HHHHHHTCEEEECCTTTCT
T ss_pred             CEEEEEECcccccccccccccccCHHHHH-----HHHHHcCCeEEEeeCCCCC
Confidence            9999999999852        11111111     1222345689999999874

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.83  E-value=1e-21  Score=122.90  Aligned_cols=115  Identities=21%  Similarity=0.215  Sum_probs=87.1

Q ss_pred             ccCCccCceE-EEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           6 HTSPTIGSNV-EEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         6 ~~~pTi~~~~-~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      .+.||++... ..+.++  ...+.+|||+|++. ...+..+++.++++++|+|++++++++.+..|+..+.......++|
T Consensus        56 ~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p  134 (196)
T 2atv_A           56 EYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVT  134 (196)
T ss_dssp             CCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCC
T ss_pred             ccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCc
Confidence            6789998554 445664  47899999999988 7788889999999999999999999999988877776543336899


Q ss_pred             EEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          83 VLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +++++||+|+...  ....+...     +.+..+++++++||++|.
T Consensus       135 iilv~NK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~~~Sa~~g~  175 (196)
T 2atv_A          135 LILVGNKADLDHSRQVSTEEGEK-----LATELACAFYECSACTGE  175 (196)
T ss_dssp             EEEEEECGGGGGGCCSCHHHHHH-----HHHHHTSEEEECCTTTCT
T ss_pred             EEEEEECcccccccccCHHHHHH-----HHHHhCCeEEEECCCcCC
Confidence            9999999998652  22222221     112235689999999874

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.83  E-value=6.7e-22  Score=124.03  Aligned_cols=116  Identities=22%  Similarity=0.277  Sum_probs=80.6

Q ss_pred             ccCCccC--ceEEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIG--SNVEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++  +....+.+++  +.+.+|||+|++.+...+..+++.+|++++|+|++++.+++.+..|+..+.... ..++
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~  139 (199)
T 3l0i_B           61 SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENV  139 (199)
T ss_dssp             HHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC--CCS
T ss_pred             CcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-cCCC
Confidence            4457777  4456666655  789999999999999999999999999999999999999999998887775543 2579


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      |+++++||+|+.....   +.......+....+++++++||++|
T Consensus       140 p~ilv~nK~Dl~~~~~---v~~~~~~~~~~~~~~~~~~vSA~~g  180 (199)
T 3l0i_B          140 NKLLVGNKCDLTTKKV---VDYTTAKEFADSLGIPFLETSAKNA  180 (199)
T ss_dssp             EEEEC-CCSSCC--CC---CCSCC-CHHHHTTTCCBCCCCC---
T ss_pred             CEEEEEECccCCcccc---CCHHHHHHHHHHcCCeEEEEECCCC
Confidence            9999999999865311   1111122233445668999999987

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.83  E-value=6.5e-22  Score=120.47  Aligned_cols=114  Identities=20%  Similarity=0.337  Sum_probs=87.8

Q ss_pred             ccCCccCce--EEEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSN--VEEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++..  ...+.+.  ...+.+|||||++.+...+..+++.++++++|+|++++.+++.+..|+..+....  .+.
T Consensus        33 ~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~  110 (168)
T 1z2a_A           33 DYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV--GDI  110 (168)
T ss_dssp             CSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH--CSC
T ss_pred             CCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCC
Confidence            678998854  4555554  4689999999999999999999999999999999999999999888877775543  578


Q ss_pred             eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+...  ...++....     .+..+++++++||++|.
T Consensus       111 piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~  152 (168)
T 1z2a_A          111 PTALVQNKIDLLDDSCIKNEEAEGL-----AKRLKLRFYRTSVKEDL  152 (168)
T ss_dssp             CEEEEEECGGGGGGCSSCHHHHHHH-----HHHHTCEEEECBTTTTB
T ss_pred             CEEEEEECcccCcccccCHHHHHHH-----HHHcCCeEEEEecCCCC
Confidence            99999999998652  222332221     12335689999999873

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.83  E-value=1e-21  Score=119.78  Aligned_cols=115  Identities=23%  Similarity=0.339  Sum_probs=81.3

Q ss_pred             ccCCccCceE--EEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNV--EEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++...  ..+.+.  ...+.+|||||++.+...+..+++.++++++|+|++++.+++.+..|+..+.+.. ..+.
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~  109 (170)
T 1g16_A           31 SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA-NDEA  109 (170)
T ss_dssp             -------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTC
T ss_pred             CCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCC
Confidence            6778888544  455554  4789999999999999999999999999999999999999998888877765543 2578


Q ss_pred             eEEEEEecCCCCCC-CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS-MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+... ...++....     .+..+++++++||++|.
T Consensus       110 piilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~  150 (170)
T 1g16_A          110 QLLLVGNKSDMETRVVTADQGEAL-----AKELGIPFIESSAKNDD  150 (170)
T ss_dssp             EEEEEEECTTCTTCCSCHHHHHHH-----HHHHTCCEEECBTTTTB
T ss_pred             cEEEEEECccCCcCccCHHHHHHH-----HHHcCCeEEEEECCCCC
Confidence            99999999999542 222222211     12234579999999873

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.83  E-value=1.8e-20  Score=117.26  Aligned_cols=96  Identities=22%  Similarity=0.365  Sum_probs=76.7

Q ss_pred             EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC-CCCHHHH
Q psy6566          23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN-SMSPVEI  101 (126)
Q Consensus        23 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~-~~~~~~v  101 (126)
                      ..+.+|||||++.+...+..+++.++++++|+|++++.++..+..|+..+...   .+.|+++|+||+|+.. ....+++
T Consensus        93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~---~~~piilv~NK~D~~~~~~~~~~~  169 (208)
T 3clv_A           93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS---SNYIIILVANKIDKNKFQVDILEV  169 (208)
T ss_dssp             EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---SCCEEEEEEECTTCC-CCSCHHHH
T ss_pred             eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh---CCCcEEEEEECCCcccccCCHHHH
Confidence            88999999999999999999999999999999999999999998888777654   2389999999999432 2333333


Q ss_pred             HhhcCcCcccCCceEEEEeeeeeCC
Q psy6566         102 SNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ....     +..+++++++||++|.
T Consensus       170 ~~~~-----~~~~~~~~~~Sa~~~~  189 (208)
T 3clv_A          170 QKYA-----QDNNLLFIQTSAKTGT  189 (208)
T ss_dssp             HHHH-----HHTTCEEEEECTTTCT
T ss_pred             HHHH-----HHcCCcEEEEecCCCC
Confidence            3322     2346689999999874

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.82  E-value=5.3e-21  Score=117.77  Aligned_cols=117  Identities=21%  Similarity=0.275  Sum_probs=75.0

Q ss_pred             ccCCccCce--EEEEEEC---CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC---C
Q psy6566           6 HTSPTIGSN--VEEVIWK---NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE---D   77 (126)
Q Consensus         6 ~~~pTi~~~--~~~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~---~   77 (126)
                      .+.||++..  ...+.+.   ...+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+....   .
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  115 (182)
T 1ky3_A           36 QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNS  115 (182)
T ss_dssp             TC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSC
T ss_pred             ccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccC
Confidence            677888844  4445543   4789999999999999999999999999999999999999999888877665432   2


Q ss_pred             CCCCeEEEEEecCCCCCC---CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          78 LSKAAVLIYANKQDIKNS---MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ..++|+++++||+|+...   ....+......    ....++++++||++|.
T Consensus       116 ~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~~~  163 (182)
T 1ky3_A          116 PETFPFVILGNKIDAEESKKIVSEKSAQELAK----SLGDIPLFLTSAKNAI  163 (182)
T ss_dssp             TTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH----HTTSCCEEEEBTTTTB
T ss_pred             cCCCcEEEEEECCccccccccCCHHHHHHHHH----hcCCCeEEEEecCCCC
Confidence            257899999999998532   12222222111    1345679999999873

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.82  E-value=4.8e-21  Score=120.95  Aligned_cols=115  Identities=23%  Similarity=0.350  Sum_probs=87.3

Q ss_pred             ccCCccCce--EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++..  ...+.+++  +.+.+|||||++.+...+..+++.++++++|+|++++.+++.+..|+..+.... ..+.
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~  126 (213)
T 3cph_A           48 SFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHA-NDEA  126 (213)
T ss_dssp             SSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHT-TTCS
T ss_pred             ccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCC
Confidence            677888844  45666665  789999999999999999999999999999999999999998888877765532 2478


Q ss_pred             eEEEEEecCCCCCC-CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS-MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+... ....+....     ....+++++++||++|.
T Consensus       127 piilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~  167 (213)
T 3cph_A          127 QLLLVGNKSDMETRVVTADQGEAL-----AKELGIPFIESSAKNDD  167 (213)
T ss_dssp             EEEEEEECTTCSSCCSCHHHHHHH-----HHHHTCCEEECBTTTTB
T ss_pred             CEEEEEECCCCcccccCHHHHHHH-----HHHcCCEEEEEeCCCCC
Confidence            99999999999532 222222211     11234579999999873

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.82  E-value=3.5e-20  Score=114.82  Aligned_cols=87  Identities=17%  Similarity=0.297  Sum_probs=70.8

Q ss_pred             ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHH-HHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT-KEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++... ..+.+  ..+.+.+|||+|++.+...+..+++.++++++|+|++++.+++.+ ..|+..+....  ++.
T Consensus        35 ~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~  112 (184)
T 1m7b_A           35 NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNT  112 (184)
T ss_dssp             SCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTC
T ss_pred             CCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCC
Confidence            6789998544 34555  457899999999999999999999999999999999999999988 45555443322  579


Q ss_pred             eEEEEEecCCCCC
Q psy6566          82 AVLIYANKQDIKN   94 (126)
Q Consensus        82 piilv~nK~D~~~   94 (126)
                      |+++++||+|+..
T Consensus       113 piilv~nK~Dl~~  125 (184)
T 1m7b_A          113 KMLLVGCKSDLRT  125 (184)
T ss_dssp             EEEEEEECGGGGG
T ss_pred             CEEEEEEcchhhc
Confidence            9999999999964

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.82  E-value=3.2e-21  Score=117.69  Aligned_cols=116  Identities=16%  Similarity=0.144  Sum_probs=84.9

Q ss_pred             ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC-CCCCC
Q psy6566           6 HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE-DLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~   81 (126)
                      .+.||++... ..+..  +...+.+|||||++.+...+..+++.++++++|+|++++.+++.+..|+..+.+.. ..++.
T Consensus        31 ~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  110 (172)
T 2erx_A           31 SYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESI  110 (172)
T ss_dssp             SCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CC
T ss_pred             CCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            6778888554 33444  34689999999999999999999999999999999999999988888776665421 12578


Q ss_pred             eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+...  ....+...     .....+++++++||++|.
T Consensus       111 pii~v~nK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~~~Sa~~~~  152 (172)
T 2erx_A          111 PIMLVGNKCDESPSREVQSSEAEA-----LARTWKCAFMETSAKLNH  152 (172)
T ss_dssp             CEEEEEECGGGGGGCCSCHHHHHH-----HHHHHTCEEEECBTTTTB
T ss_pred             CEEEEEEccccccccccCHHHHHH-----HHHHhCCeEEEecCCCCc
Confidence            99999999998643  22222111     112235689999999873

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.82  E-value=1.8e-21  Score=122.05  Aligned_cols=87  Identities=18%  Similarity=0.277  Sum_probs=69.2

Q ss_pred             ccCCccCceE-EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNV-EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK-EELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~   81 (126)
                      .+.||++... ..+.+++  +.+.+|||+|++.+..++..+++.++++++|+|++++.++..+. .|+..+....  +++
T Consensus        48 ~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~  125 (201)
T 2q3h_A           48 EYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC--PKA  125 (201)
T ss_dssp             ---CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSS
T ss_pred             CCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCC
Confidence            6789998444 4555655  57889999999999999999999999999999999999999987 5655554332  479


Q ss_pred             eEEEEEecCCCCC
Q psy6566          82 AVLIYANKQDIKN   94 (126)
Q Consensus        82 piilv~nK~D~~~   94 (126)
                      |+++++||+|+..
T Consensus       126 p~ilv~nK~Dl~~  138 (201)
T 2q3h_A          126 PIILVGTQSDLRE  138 (201)
T ss_dssp             CEEEEEECGGGGG
T ss_pred             CEEEEEECHhhhh
Confidence            9999999999864

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.81  E-value=7.1e-21  Score=119.67  Aligned_cols=117  Identities=18%  Similarity=0.261  Sum_probs=87.0

Q ss_pred             ccCCccCceEEE--EEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC---CC
Q psy6566           6 HTSPTIGSNVEE--VIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE---DL   78 (126)
Q Consensus         6 ~~~pTi~~~~~~--~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~---~~   78 (126)
                      .+.||++.....  +.++  ...+.+|||+|++.+...+..+++.+|++++|+|++++.++..+..|+..+....   ..
T Consensus        36 ~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~  115 (207)
T 1vg8_A           36 QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDP  115 (207)
T ss_dssp             SCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSG
T ss_pred             CCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccC
Confidence            678898855544  4443  3789999999999999999999999999999999999999988888777665432   12


Q ss_pred             CCCeEEEEEecCCCCCC-CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          79 SKAAVLIYANKQDIKNS-MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        79 ~~~piilv~nK~D~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .+.|+++++||+|+... ...++......    ...+++++++||++|.
T Consensus       116 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~  160 (207)
T 1vg8_A          116 ENFPFVVLGNKIDLENRQVATKRAQAWCY----SKNNIPYFETSAKEAI  160 (207)
T ss_dssp             GGSCEEEEEECTTSSCCCSCHHHHHHHHH----HTTSCCEEECBTTTTB
T ss_pred             CCCcEEEEEECCCCcccccCHHHHHHHHH----hcCCceEEEEeCCCCC
Confidence            47899999999999742 22222222111    1345679999999873

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.81  E-value=5.2e-20  Score=122.59  Aligned_cols=120  Identities=13%  Similarity=0.104  Sum_probs=88.3

Q ss_pred             ccCCccCceEEEEEE-CCEEEEEEEcCCCcch-----HHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCC-CCC
Q psy6566           6 HTSPTIGSNVEEVIW-KNIHFIMWDLGGQQSL-----RAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNH-EDL   78 (126)
Q Consensus         6 ~~~pTi~~~~~~~~~-~~~~~~i~Dt~G~~~~-----~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~-~~~   78 (126)
                      .+.||++.....+.+ ++..+.+|||||++.+     ...+..++++++++++|+|++++++++++..|...+... ...
T Consensus        34 ~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~  113 (307)
T 3r7w_A           34 RLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYS  113 (307)
T ss_dssp             GCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHC
T ss_pred             CcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhC
Confidence            578999998888888 7899999999999998     667888899999999999999999999886654333221 012


Q ss_pred             CCCeEEEEEecCCCCCCCCHH---HHHhhcCcCcccCCc---eEEEEeeeeeC
Q psy6566          79 SKAAVLIYANKQDIKNSMSPV---EISNLLDLTSIKKQQ---WHIQSCCALTG  125 (126)
Q Consensus        79 ~~~piilv~nK~D~~~~~~~~---~v~~~~~~~~~~~~~---~~~~~~Sa~~~  125 (126)
                      +++|+++++||+|+.......   ++.......+....+   ++++++||+++
T Consensus       114 ~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~~  166 (307)
T 3r7w_A          114 PDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDE  166 (307)
T ss_dssp             TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTSS
T ss_pred             CCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecCC
Confidence            579999999999987621111   022222223333333   78999999873

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.81  E-value=6e-21  Score=121.04  Aligned_cols=119  Identities=16%  Similarity=0.230  Sum_probs=69.2

Q ss_pred             ccCCccCce-EEEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSN-VEEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK-EELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~-~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~   81 (126)
                      .+.||++.. ...+.++  .+.+.+|||+|++.+...+..+++.++++++|+|++++.+++.+. .|+..+....  +++
T Consensus        62 ~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~  139 (214)
T 2j1l_A           62 SYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC--KKV  139 (214)
T ss_dssp             --CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSC
T ss_pred             CCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC--CCC
Confidence            677888844 3455664  458999999999999999999999999999999999999999986 4555553322  578


Q ss_pred             eEEEEEecCCCCCCCCHHHHH---------hhcCcCcccCCce-EEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPVEIS---------NLLDLTSIKKQQW-HIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~---------~~~~~~~~~~~~~-~~~~~Sa~~~~  126 (126)
                      |+++++||+|+.......+..         ......+++..+. +++++||++|.
T Consensus       140 piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~  194 (214)
T 2j1l_A          140 PIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHD  194 (214)
T ss_dssp             CEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTB
T ss_pred             CEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCC
Confidence            999999999997642111110         0001112223344 89999999873

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.81  E-value=9.1e-21  Score=119.07  Aligned_cols=119  Identities=13%  Similarity=0.244  Sum_probs=84.2

Q ss_pred             ccCCccCceE-EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNV-EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK-EELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~   81 (126)
                      .+.||++... ..+.+++  ..+.+|||+|++.+...+..+++.++++++|+|++++.++..+. .|+..+....  ++.
T Consensus        53 ~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~  130 (201)
T 2gco_A           53 VYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC--PNV  130 (201)
T ss_dssp             SCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTC
T ss_pred             ccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCC
Confidence            6789998554 4566644  68999999999999999999999999999999999999999884 4444443321  578


Q ss_pred             eEEEEEecCCCCCCCCHHH-HHh--------hcCcCcccCCce-EEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPVE-ISN--------LLDLTSIKKQQW-HIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~-v~~--------~~~~~~~~~~~~-~~~~~Sa~~~~  126 (126)
                      |+++++||+|+.......+ +..        .....+++..+. +++++||++|+
T Consensus       131 piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~  185 (201)
T 2gco_A          131 PIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKE  185 (201)
T ss_dssp             CEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCT
T ss_pred             CEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCC
Confidence            9999999999976411111 100        000111122334 79999999874

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.81  E-value=4e-21  Score=121.27  Aligned_cols=87  Identities=17%  Similarity=0.297  Sum_probs=71.1

Q ss_pred             ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHH-HHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT-KEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++... ..+.+  ..+.+.+|||+|++.+..++..+++.++++++|+|++++.+++.+ ..|+..+.+..  ++.
T Consensus        56 ~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~--~~~  133 (205)
T 1gwn_A           56 NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNT  133 (205)
T ss_dssp             SCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTC
T ss_pred             CcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCC
Confidence            6789998554 34455  457899999999999999999999999999999999999999988 55655553322  579


Q ss_pred             eEEEEEecCCCCC
Q psy6566          82 AVLIYANKQDIKN   94 (126)
Q Consensus        82 piilv~nK~D~~~   94 (126)
                      |+++++||+|+..
T Consensus       134 piilv~nK~Dl~~  146 (205)
T 1gwn_A          134 KMLLVGCKSDLRT  146 (205)
T ss_dssp             EEEEEEECGGGGG
T ss_pred             CEEEEEechhhcc
Confidence            9999999999864

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.81  E-value=3.6e-21  Score=119.02  Aligned_cols=119  Identities=17%  Similarity=0.298  Sum_probs=83.9

Q ss_pred             ccCCccCceE-EEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNV-EEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK-EELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~-~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~   81 (126)
                      .+.||++... ..+.++  .+.+.+|||||++.+...+..+++.++++++|+|++++.++..+. .|+..+....  ++.
T Consensus        33 ~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~  110 (186)
T 1mh1_A           33 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC--PNT  110 (186)
T ss_dssp             SCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTS
T ss_pred             CcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhC--CCC
Confidence            6788988443 455564  467889999999999999999999999999999999999999887 4555544322  478


Q ss_pred             eEEEEEecCCCCCCCCHHH-HHh--------hcCcCcccCCce-EEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPVE-ISN--------LLDLTSIKKQQW-HIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~-v~~--------~~~~~~~~~~~~-~~~~~Sa~~~~  126 (126)
                      |+++++||+|+.......+ +..        .....+.+..+. +++++||++|+
T Consensus       111 piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~  165 (186)
T 1mh1_A          111 PIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR  165 (186)
T ss_dssp             CEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCT
T ss_pred             CEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCcc
Confidence            9999999999865311110 000        000111222344 89999999874

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.81  E-value=1.4e-21  Score=120.59  Aligned_cols=119  Identities=14%  Similarity=0.221  Sum_probs=72.6

Q ss_pred             ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK-EELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~   81 (126)
                      .+.||++... ..+.+  ..+.+.+|||+|++++...+..+++.++++++|+|++++.+++.+. .|+..+....  ++.
T Consensus        36 ~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~  113 (182)
T 3bwd_D           36 DYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA--PGV  113 (182)
T ss_dssp             ---------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTC
T ss_pred             CCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCC
Confidence            6778887433 23334  4567889999999999999999999999999999999999999987 4555443322  478


Q ss_pred             eEEEEEecCCCCCCCCHHH-------HHhhcCcCcccCCce-EEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPVE-------ISNLLDLTSIKKQQW-HIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~-------v~~~~~~~~~~~~~~-~~~~~Sa~~~~  126 (126)
                      |+++++||+|+.+......       +.......+.+..+. +++++||++|+
T Consensus       114 piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  166 (182)
T 3bwd_D          114 PIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQE  166 (182)
T ss_dssp             CEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCT
T ss_pred             CEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCC
Confidence            9999999999865311000       000111112222343 89999999874

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.81  E-value=9.4e-21  Score=118.40  Aligned_cols=116  Identities=14%  Similarity=0.117  Sum_probs=85.6

Q ss_pred             ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC-CCCC
Q psy6566           6 HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED-LSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~   81 (126)
                      .+.||++... ..+.+  ....+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+..+.+... ..+.
T Consensus        36 ~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~  115 (199)
T 2gf0_A           36 TYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDI  115 (199)
T ss_dssp             TTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGS
T ss_pred             cccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            5778988554 33444  346899999999999999999999999999999999999999888877655544211 2478


Q ss_pred             eEEEEEecCCCCCC-CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS-MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+... ....+...     .....+++++++||++|.
T Consensus       116 piilv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~  156 (199)
T 2gf0_A          116 PVMLVGNKCDETQREVDTREAQA-----VAQEWKCAFMETSAKMNY  156 (199)
T ss_dssp             CEEEEEECTTCSSCSSCHHHHHH-----HHHHHTCEEEECBTTTTB
T ss_pred             CEEEEEECccCCccccCHHHHHH-----HHHHhCCeEEEEecCCCC
Confidence            99999999999752 22222221     112234689999999873

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.81  E-value=2.1e-20  Score=113.28  Aligned_cols=116  Identities=16%  Similarity=0.195  Sum_probs=87.2

Q ss_pred             ccCCccCce-EEEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           6 HTSPTIGSN-VEEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         6 ~~~pTi~~~-~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      .+.||++.. ...+.+.  ...+.+|||+|++.+...+..+++.++++++|+|++++.++..+..|+..+.......+.|
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p  110 (166)
T 2ce2_X           31 ECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP  110 (166)
T ss_dssp             CCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC
T ss_pred             ccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc
Confidence            567888744 3455553  4678999999999999999999999999999999999999999988887765543335799


Q ss_pred             EEEEEecCCCCCC-CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          83 VLIYANKQDIKNS-MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +++++||+|+... ....+....     .+..+++++++||++|.
T Consensus       111 ~iiv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~  150 (166)
T 2ce2_X          111 MVLVGNKSDLAARTVESRQAQDL-----ARSYGIPYIETSAKTRQ  150 (166)
T ss_dssp             EEEEEECTTCSCCCSCHHHHHHH-----HHHHTCCEEEECTTTCT
T ss_pred             EEEEEEchhhhhcccCHHHHHHH-----HHHcCCeEEEecCCCCC
Confidence            9999999998752 222222221     12234579999999874

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.81  E-value=2.7e-20  Score=115.66  Aligned_cols=116  Identities=16%  Similarity=0.185  Sum_probs=76.9

Q ss_pred             ccCCccCceE-EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           6 HTSPTIGSNV-EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         6 ~~~pTi~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      .+.||++... ..+.+.+  ..+.+|||+|++.+...+..+++.++++++|+|++++.++..+..|+..+.......++|
T Consensus        49 ~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p  128 (190)
T 3con_A           49 EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVP  128 (190)
T ss_dssp             CCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC
T ss_pred             ccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCe
Confidence            5677887443 4566644  679999999999999999999999999999999999999999888777665543335789


Q ss_pred             EEEEEecCCCCC-CCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          83 VLIYANKQDIKN-SMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +++++||+|+.. ....+++...     .+..+++++++||++|.
T Consensus       129 ~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~  168 (190)
T 3con_A          129 MVLVGNKCDLPTRTVDTKQAHEL-----AKSYGIPFIETSAKTRQ  168 (190)
T ss_dssp             EEEEEECTTCSCCCSCHHHHHHH-----HHHHTCCEEECCTTTCT
T ss_pred             EEEEEECCcCCcccCCHHHHHHH-----HHHcCCeEEEEeCCCCC
Confidence            999999999875 2232332222     12234579999999874

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.80  E-value=2.9e-20  Score=117.13  Aligned_cols=119  Identities=17%  Similarity=0.278  Sum_probs=82.7

Q ss_pred             ccCCccCce-EEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSN-VEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK-EELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~-~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~   81 (126)
                      .+.||++.. ...+.+  ..+.+.+|||+|++.+...+..+++.++++++|+|++++.+++.+. .|+..+... . ++.
T Consensus        58 ~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~  135 (204)
T 4gzl_A           58 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-C-PNT  135 (204)
T ss_dssp             -CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-C-SSC
T ss_pred             CcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-C-CCC
Confidence            677888733 344555  4466779999999999999999999999999999999999999987 454444333 2 679


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhh---------cCcCcccCCc-eEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNL---------LDLTSIKKQQ-WHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~---------~~~~~~~~~~-~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+.......+....         ....+.+..+ .+++++||++|+
T Consensus       136 piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~  190 (204)
T 4gzl_A          136 PIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR  190 (204)
T ss_dssp             CEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCT
T ss_pred             CEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCC
Confidence            99999999998754211111110         0011111222 369999999874

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.80  E-value=2.9e-20  Score=116.36  Aligned_cols=102  Identities=17%  Similarity=0.198  Sum_probs=75.1

Q ss_pred             CCEEEEEEEcCCCcchHHHH---HhhccCCcEEEEEEECCCc--ccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCC
Q psy6566          21 KNIHFIMWDLGGQQSLRAAW---STYYTNTEFVILVIDSTDR--ERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNS   95 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~---~~~~~~~~~~l~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~   95 (126)
                      ..+.+.+|||+|+++|....   ..++++++++++|+|++++  +++..+..|+......  .++.|+++|+||+|+.+.
T Consensus        67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~  144 (196)
T 3llu_A           67 SFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSD  144 (196)
T ss_dssp             TSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCH
T ss_pred             CeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCch
Confidence            45899999999999987765   7899999999999999987  6666666666665322  258999999999998652


Q ss_pred             C----CHHHHHhhcCcCccc----CCceEEEEeeeee
Q psy6566          96 M----SPVEISNLLDLTSIK----KQQWHIQSCCALT  124 (126)
Q Consensus        96 ~----~~~~v~~~~~~~~~~----~~~~~~~~~Sa~~  124 (126)
                      .    ....+.......+++    ..++++++|||++
T Consensus       145 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~  181 (196)
T 3llu_A          145 DHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD  181 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS
T ss_pred             hhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech
Confidence            1    112333322222332    6678999999986

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.80  E-value=1.8e-20  Score=117.15  Aligned_cols=117  Identities=12%  Similarity=0.105  Sum_probs=78.6

Q ss_pred             cccCCccCc--eEEEEEECC--EEEEEEEcCCCcc-hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCC
Q psy6566           5 VHTSPTIGS--NVEEVIWKN--IHFIMWDLGGQQS-LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLS   79 (126)
Q Consensus         5 ~~~~pTi~~--~~~~~~~~~--~~~~i~Dt~G~~~-~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~   79 (126)
                      ....||+|.  ....+.+++  +.+.+|||+|++. ++.++..+++.++++++|||++++++|+.+..|+..+.+.....
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~  113 (192)
T 2cjw_A           34 DSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTE  113 (192)
T ss_dssp             ----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTS
T ss_pred             CccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCC
Confidence            334455663  345666654  5678999999876 44567778899999999999999999999988877665432235


Q ss_pred             CCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          80 KAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        80 ~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +.|+++++||+|+...  ....+.     ..++...++++++|||++|.
T Consensus       114 ~~piilV~NK~Dl~~~r~v~~~~~-----~~~a~~~~~~~~e~SA~~g~  157 (192)
T 2cjw_A          114 DIPIILVGNKSDLVRXREVSVSEG-----RAXAVVFDXKFIETSAAVQH  157 (192)
T ss_dssp             CCCEEEEEECTTCGGGCCSCHHHH-----HHHHHHTTCEEEECBTTTTB
T ss_pred             CCeEEEEEechhhhccccccHHHH-----HHHHHHhCCceEEeccccCC
Confidence            7899999999998642  222211     11122335689999999873

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.79  E-value=3e-19  Score=112.59  Aligned_cols=119  Identities=15%  Similarity=0.256  Sum_probs=79.0

Q ss_pred             ccCCccCceE-EEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHH-HHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNV-EEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT-KEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++... ..+.+++  ..+.+|||+|++.+...+..+++.++++++|+|++++.++..+ ..|+..+....  ++.
T Consensus        53 ~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~  130 (207)
T 2fv8_A           53 VYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC--PNV  130 (207)
T ss_dssp             ------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTC
T ss_pred             cCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCC
Confidence            5678988554 4456644  6899999999999999999999999999999999999999988 44544443321  578


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhhcC---------cCcccCCce-EEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNLLD---------LTSIKKQQW-HIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~~~---------~~~~~~~~~-~~~~~Sa~~~~  126 (126)
                      |+++++||+|+.......+......         ..++...+. +++++||++|.
T Consensus       131 piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~  185 (207)
T 2fv8_A          131 PIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKE  185 (207)
T ss_dssp             CEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCT
T ss_pred             CEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCC
Confidence            9999999999865311111111100         111112233 79999999874

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.67  E-value=5.8e-21  Score=120.11  Aligned_cols=119  Identities=18%  Similarity=0.303  Sum_probs=85.0

Q ss_pred             ccCCccCce-EEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSN-VEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK-EELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~-~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~   81 (126)
                      .+.||++.. ...+.+  ..+.+.+|||+|++.+...+..+++.++++++|+|++++.++..+. .|+..+ .... +++
T Consensus        58 ~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l-~~~~-~~~  135 (204)
T 3th5_A           58 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHC-PNT  135 (204)
Confidence            567787733 334444  4567889999999999999999999999999999999999999887 444444 3322 478


Q ss_pred             eEEEEEecCCCCCCCCHH---------HHHhhcCcCcccCCce-EEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPV---------EISNLLDLTSIKKQQW-HIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~---------~v~~~~~~~~~~~~~~-~~~~~Sa~~~~  126 (126)
                      |+++++||+|+.......         .+.......+++..+. +++++||++|+
T Consensus       136 piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~  190 (204)
T 3th5_A          136 PIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR  190 (204)
Confidence            999999999997532110         2222223333444555 89999999874

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.74  E-value=3.8e-19  Score=118.89  Aligned_cols=119  Identities=16%  Similarity=0.274  Sum_probs=83.1

Q ss_pred             ccCCccCce-EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHH-HHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSN-VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK-EELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~   81 (126)
                      .+.||++.. ...+.+++  +.+.+|||+|++.+...+..+++.++++++|+|++++.++..+. .|+..+....  +++
T Consensus       183 ~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~  260 (332)
T 2wkq_A          183 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC--PNT  260 (332)
T ss_dssp             SCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTS
T ss_pred             ccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhC--CCC
Confidence            678888844 34556654  55669999999999999999999999999999999999999887 4444443322  479


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhh---------cCcCcccCCce-EEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNL---------LDLTSIKKQQW-HIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~---------~~~~~~~~~~~-~~~~~Sa~~~~  126 (126)
                      |+++++||+|+.......+....         ....+.+..+. +++++||++|.
T Consensus       261 p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  315 (332)
T 2wkq_A          261 PIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR  315 (332)
T ss_dssp             CEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCT
T ss_pred             cEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCc
Confidence            99999999998653110000000         00111222344 89999999874

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.74  E-value=5.1e-19  Score=117.53  Aligned_cols=112  Identities=16%  Similarity=0.106  Sum_probs=80.7

Q ss_pred             cccCCccCceEEEEEE-CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcc-cHHHHHHHHHHHhCCCCCCCCe
Q psy6566           5 VHTSPTIGSNVEEVIW-KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE-RISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         5 ~~~~pTi~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      .+|.||+|.... +.+ .+..+++|||  +++++.+++.+++++|++++|+|++++. ++..+..|+..+..    .++|
T Consensus        45 ~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~----~~~p  117 (301)
T 1u0l_A           45 QNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELE  117 (301)
T ss_dssp             TTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCE
T ss_pred             cCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCC
Confidence            368899995543 444 2237999999  9999999999999999999999999987 78878777765532    4789


Q ss_pred             EEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          83 VLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +++|+||+|+.+....++..+... . .... ++++++||++|.
T Consensus       118 iilv~NK~DL~~~~~v~~~~~~~~-~-~~~~-~~~~~~SAktg~  158 (301)
T 1u0l_A          118 TVMVINKMDLYDEDDLRKVRELEE-I-YSGL-YPIVKTSAKTGM  158 (301)
T ss_dssp             EEEEECCGGGCCHHHHHHHHHHHH-H-HTTT-SCEEECCTTTCT
T ss_pred             EEEEEeHHHcCCchhHHHHHHHHH-H-Hhhh-CcEEEEECCCCc
Confidence            999999999975311111111110 1 1111 679999999874

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.74  E-value=4.9e-18  Score=106.43  Aligned_cols=95  Identities=17%  Similarity=0.156  Sum_probs=71.8

Q ss_pred             cCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHH---HHHhCCCC-CCCCeEEEEEecC-CCCCCCCHHHHHhh
Q psy6566          30 LGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEEL---YKMLNHED-LSKAAVLIYANKQ-DIKNSMSPVEISNL  104 (126)
Q Consensus        30 t~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~---~~~~~~~~-~~~~piilv~nK~-D~~~~~~~~~v~~~  104 (126)
                      .+||+.++.+|+.|++++|++|||+|+++.+.++ .+..+   ..++.... ..++|++|++||. |+++..+..++.+.
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~  187 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE  187 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHH
Confidence            4589999999999999999999999999886554 55555   44454432 4789999999995 88888888999999


Q ss_pred             cCcCcccCCceEEEEeeeeeCC
Q psy6566         105 LDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus       105 ~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +.+... .+.+.++.|||++|+
T Consensus       188 L~L~~l-~R~W~Iq~csA~TGe  208 (227)
T 3l82_B          188 LHLNLL-NHPWLVQDTEAETLT  208 (227)
T ss_dssp             TTGGGG-CSCEEEEEEETTTCT
T ss_pred             cCCcCC-CCCEEEEEeECCCCc
Confidence            888776 489999999999985

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.73  E-value=2.8e-17  Score=100.85  Aligned_cols=114  Identities=16%  Similarity=0.122  Sum_probs=79.5

Q ss_pred             ccCCccC--ceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE
Q psy6566           6 HTSPTIG--SNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV   83 (126)
Q Consensus         6 ~~~pTi~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi   83 (126)
                      .+.|+++  +....+.+++..+.+|||||++.+...+..+++.+|++++|+|+++...... ...+.... .   .++|+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~l~~~~-~---~~~p~  110 (178)
T 2lkc_A           36 QEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQT-VEAINHAK-A---ANVPI  110 (178)
T ss_dssp             SSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHH-HHHHHHHG-G---GSCCE
T ss_pred             CCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHH-h---CCCCE
Confidence            3445554  5566778888999999999999999988889999999999999987433222 22333332 2   46899


Q ss_pred             EEEEecCCCCCCCCHHHHHhhcCc--CcccCC--ceEEEEeeeeeC
Q psy6566          84 LIYANKQDIKNSMSPVEISNLLDL--TSIKKQ--QWHIQSCCALTG  125 (126)
Q Consensus        84 ilv~nK~D~~~~~~~~~v~~~~~~--~~~~~~--~~~~~~~Sa~~~  125 (126)
                      ++++||+|+... ..+++...+..  ......  .++++++||++|
T Consensus       111 ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  155 (178)
T 2lkc_A          111 IVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTK  155 (178)
T ss_dssp             EEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSS
T ss_pred             EEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCC
Confidence            999999999763 23333332221  122222  378999999987

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.72  E-value=1.3e-19  Score=114.97  Aligned_cols=115  Identities=21%  Similarity=0.306  Sum_probs=77.8

Q ss_pred             ccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccC----CcEEEEEEECC-CcccHHHHHHHHHHHhCCC---C
Q psy6566           6 HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTN----TEFVILVIDST-DRERISLTKEELYKMLNHE---D   77 (126)
Q Consensus         6 ~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~----~~~~l~v~d~~-~~~~~~~~~~~~~~~~~~~---~   77 (126)
                      .+.||++...     ....+.+|||||++.++..+..+++.    ++++++|+|++ +++++.....|+..++...   .
T Consensus        43 ~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (218)
T 1nrj_B           43 SQEPLSAADY-----DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSC  117 (218)
T ss_dssp             CSSCEEETTG-----GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred             ecCceEEEEe-----eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccc
Confidence            3556655332     56789999999999999988888877    89999999999 8889999988888776532   1


Q ss_pred             CCCCeEEEEEecCCCCCCCCHHHHHhhcC---cCcccCCceEEEEeeeeeC
Q psy6566          78 LSKAAVLIYANKQDIKNSMSPVEISNLLD---LTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~~~~~~v~~~~~---~~~~~~~~~~~~~~Sa~~~  125 (126)
                      ..++|+++++||+|+.......++...+.   ..+....+.+++++||++|
T Consensus       118 ~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~  168 (218)
T 1nrj_B          118 ENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKIN  168 (218)
T ss_dssp             TTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             cCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence            25799999999999987654333221111   1122223445777777765

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.72  E-value=1e-17  Score=102.92  Aligned_cols=105  Identities=17%  Similarity=0.165  Sum_probs=73.9

Q ss_pred             ccCceEEEEEECCEEEEEEEcCCCcchH----H--H--HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566          10 TIGSNVEEVIWKNIHFIMWDLGGQQSLR----A--A--WSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus        10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~~----~--~--~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      |.++....+.+++..+.+|||||++.+.    .  .  ...+++.++++++|+|++++.++.. ..|+..+.+.. ..++
T Consensus        39 t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~-~~~~  116 (172)
T 2gj8_A           39 TRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARL-PAKL  116 (172)
T ss_dssp             CCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHS-CTTC
T ss_pred             eeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhc-ccCC
Confidence            3446667788888899999999986531    1  1  1235889999999999998877763 35555554332 2578


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+.+..          ..+......+++++||++|+
T Consensus       117 p~ilv~NK~Dl~~~~----------~~~~~~~~~~~~~~SA~~g~  151 (172)
T 2gj8_A          117 PITVVRNKADITGET----------LGMSEVNGHALIRLSARTGE  151 (172)
T ss_dssp             CEEEEEECHHHHCCC----------CEEEEETTEEEEECCTTTCT
T ss_pred             CEEEEEECccCCcch----------hhhhhccCCceEEEeCCCCC
Confidence            999999999985421          11222346789999999874

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.71  E-value=5.6e-17  Score=103.61  Aligned_cols=114  Identities=18%  Similarity=0.159  Sum_probs=72.0

Q ss_pred             ccCceEEEEEECCEEEEEEEcCCC------cc----hHHHHHhhccCCcEEEEEEECCCcccHH--HHHHHHHHHhCCCC
Q psy6566          10 TIGSNVEEVIWKNIHFIMWDLGGQ------QS----LRAAWSTYYTNTEFVILVIDSTDRERIS--LTKEELYKMLNHED   77 (126)
Q Consensus        10 Ti~~~~~~~~~~~~~~~i~Dt~G~------~~----~~~~~~~~~~~~~~~l~v~d~~~~~~~~--~~~~~~~~~~~~~~   77 (126)
                      |..+....+..++..+.+|||||+      +.    +.. +..++..++++++|+|++++.++.  ....|+..+...  
T Consensus        63 t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--  139 (228)
T 2qu8_A           63 TKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTT-ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--  139 (228)
T ss_dssp             --CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHH-HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--
T ss_pred             ceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHH-HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh--
Confidence            444556666678899999999999      54    222 344578899999999999887764  233455555433  


Q ss_pred             CCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCc--eEEEEeeeeeCC
Q psy6566          78 LSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQ--WHIQSCCALTGE  126 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~  126 (126)
                      .++.|+++|+||+|+................+....+  ++++++||++|+
T Consensus       140 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~  190 (228)
T 2qu8_A          140 FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGV  190 (228)
T ss_dssp             C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCT
T ss_pred             hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCC
Confidence            2478999999999997532211110011111222223  789999999874

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.69  E-value=7.1e-17  Score=97.47  Aligned_cols=102  Identities=15%  Similarity=0.089  Sum_probs=71.6

Q ss_pred             CceEEEEEECCEEEEEEEcCCCcc-------hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEE
Q psy6566          12 GSNVEEVIWKNIHFIMWDLGGQQS-------LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVL   84 (126)
Q Consensus        12 ~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii   84 (126)
                      ......+...+..+.+|||+|++.       +...+..+++.++++++|+|++++.+...  .++...++.   .+.|++
T Consensus        38 ~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~---~~~p~i  112 (161)
T 2dyk_A           38 DLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQAD--YEVAEYLRR---KGKPVI  112 (161)
T ss_dssp             CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHH--HHHHHHHHH---HTCCEE
T ss_pred             cceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhH--HHHHHHHHh---cCCCEE
Confidence            355666777888999999999887       45677788999999999999987543322  233344333   468999


Q ss_pred             EEEecCCCCCCCCHHHHHhhcCcCcccCCce-EEEEeeeeeCC
Q psy6566          85 IYANKQDIKNSMSPVEISNLLDLTSIKKQQW-HIQSCCALTGE  126 (126)
Q Consensus        85 lv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~  126 (126)
                      +++||+|+....  ++     ...+. ..++ +++++||++|.
T Consensus       113 lv~nK~Dl~~~~--~~-----~~~~~-~~~~~~~~~~Sa~~~~  147 (161)
T 2dyk_A          113 LVATKVDDPKHE--LY-----LGPLY-GLGFGDPIPTSSEHAR  147 (161)
T ss_dssp             EEEECCCSGGGG--GG-----CGGGG-GGSSCSCEECBTTTTB
T ss_pred             EEEECcccccch--Hh-----HHHHH-hCCCCCeEEEecccCC
Confidence            999999987531  11     11222 2233 68999999873

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.68  E-value=1.4e-17  Score=104.29  Aligned_cols=115  Identities=22%  Similarity=0.315  Sum_probs=83.0

Q ss_pred             ccCCccCce--EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||+|..  ...+.+++  +.+.+|||+|++.++..+..+++.++++++|+|+++..+++.+..|+..+... ...+.
T Consensus        33 ~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~  111 (199)
T 2f9l_A           33 ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH-ADSNI  111 (199)
T ss_dssp             ---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTC
T ss_pred             CCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCC
Confidence            567898854  45666755  57889999999999888888999999999999999988888887777655332 12568


Q ss_pred             eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+...  ....+..     ..+...++.++++||+++.
T Consensus       112 ~i~~v~nK~Dl~~~~~~~~~~a~-----~l~~~~~~~~~d~Sal~~~  153 (199)
T 2f9l_A          112 VIMLVGNKSDLRHLRAVPTDEAR-----AFAEKNNLSFIETSALDST  153 (199)
T ss_dssp             EEEEEEECTTCGGGCCSCHHHHH-----HHHHHTTCEEEECCTTTCT
T ss_pred             eEEEEEECcccccccCcCHHHHH-----HHHHHcCCeEEEEeCCCCC
Confidence            99999999999642  2222211     1223345689999999863

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.67  E-value=1.5e-16  Score=99.04  Aligned_cols=115  Identities=17%  Similarity=0.145  Sum_probs=71.0

Q ss_pred             ccCCccCceE--EEEEECCEEEEEEEcCC----------CcchHHHHHhhccCC---cEEEEEEECCCcccHHHHHHHHH
Q psy6566           6 HTSPTIGSNV--EEVIWKNIHFIMWDLGG----------QQSLRAAWSTYYTNT---EFVILVIDSTDRERISLTKEELY   70 (126)
Q Consensus         6 ~~~pTi~~~~--~~~~~~~~~~~i~Dt~G----------~~~~~~~~~~~~~~~---~~~l~v~d~~~~~~~~~~~~~~~   70 (126)
                      .+.||.+...  ....++. .+.+|||||          ++.+..++..+++.+   +++++|+|++++.++....  +.
T Consensus        51 ~~~~~~~~t~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~  127 (195)
T 1svi_A           51 RTSSKPGKTQTLNFYIIND-ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ--MY  127 (195)
T ss_dssp             ---------CCEEEEEETT-TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HH
T ss_pred             ccCCCCCceeeEEEEEECC-cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH--HH
Confidence            4556666332  3333433 699999999          788888888888777   9999999999877766542  11


Q ss_pred             HHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          71 KMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        71 ~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ..+..   .+.|+++++||+|+.......................+++++||++|+
T Consensus       128 ~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  180 (195)
T 1svi_A          128 EFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKK  180 (195)
T ss_dssp             HHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCT
T ss_pred             HHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCC
Confidence            22222   468999999999997643222211221111222346789999999874

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.65  E-value=4.4e-17  Score=99.31  Aligned_cols=105  Identities=19%  Similarity=0.234  Sum_probs=69.8

Q ss_pred             cCCcc--CceEEEEEECCEEEEEEEcCCCcchH------HHHHhhcc--CCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566           7 TSPTI--GSNVEEVIWKNIHFIMWDLGGQQSLR------AAWSTYYT--NTEFVILVIDSTDRERISLTKEELYKMLNHE   76 (126)
Q Consensus         7 ~~pTi--~~~~~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~~~--~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~   76 (126)
                      +.|++  ......+.+++..+.+|||||++.+.      .+...+++  .++++++|+|+++.+   ....|+..+.+  
T Consensus        32 ~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~---~~~~~~~~~~~--  106 (165)
T 2wji_A           32 NWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALE---RNLYLTLQLME--  106 (165)
T ss_dssp             -----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHH---HHHHHHHHHHH--
T ss_pred             CCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchh---HhHHHHHHHHh--
Confidence            34544  34556677788999999999998774      45566665  899999999998743   34445555543  


Q ss_pred             CCCCCeEEEEEecCCCCCC--C--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          77 DLSKAAVLIYANKQDIKNS--M--SPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~--~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                        .+.|+++++||+|+...  .  ...++...        .+++++++||++|+
T Consensus       107 --~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~--------~~~~~~~~SA~~~~  150 (165)
T 2wji_A          107 --MGANLLLALNKMDLAKSLGIEIDVDKLEKI--------LGVKVVPLSAAKKM  150 (165)
T ss_dssp             --TTCCEEEEEECHHHHHHTTCCCCHHHHHHH--------HTSCEEECBGGGTB
T ss_pred             --cCCCEEEEEEchHhccccChhhHHHHHHHH--------hCCCEEEEEcCCCC
Confidence              36899999999997531  1  11222222        23579999999874

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.65  E-value=8.9e-17  Score=105.12  Aligned_cols=95  Identities=18%  Similarity=0.159  Sum_probs=75.2

Q ss_pred             cCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHH---HHhCCCC-CCCCeEEEEEec-CCCCCCCCHHHHHhh
Q psy6566          30 LGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELY---KMLNHED-LSKAAVLIYANK-QDIKNSMSPVEISNL  104 (126)
Q Consensus        30 t~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~---~~~~~~~-~~~~piilv~nK-~D~~~~~~~~~v~~~  104 (126)
                      .+||+..+..|+.|++++|++|||+|+++.+.++ .+..+.   .++.... ..++|++|++|| .|+++..+..++.+.
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~  272 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE  272 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence            4789999999999999999999999999987655 444333   4444321 368999999997 699888888999999


Q ss_pred             cCcCcccCCceEEEEeeeeeCC
Q psy6566         105 LDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus       105 ~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +++... .+.+.++.|||++|+
T Consensus       273 L~L~~l-~r~W~Iq~csA~tGe  293 (312)
T 3l2o_B          273 LHLNLL-NHPWLVQDTEAETLT  293 (312)
T ss_dssp             TTGGGG-CSCEEEEEEETTTCT
T ss_pred             cCCccC-CCcEEEEecccCCCc
Confidence            887766 479999999999985

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.64  E-value=7.8e-18  Score=109.46  Aligned_cols=101  Identities=13%  Similarity=0.067  Sum_probs=72.3

Q ss_pred             CCEEEEEEE-----------------------cCCCcchHHHHHhhcc---------------------CCcEEEEEEEC
Q psy6566          21 KNIHFIMWD-----------------------LGGQQSLRAAWSTYYT---------------------NTEFVILVIDS   56 (126)
Q Consensus        21 ~~~~~~i~D-----------------------t~G~~~~~~~~~~~~~---------------------~~~~~l~v~d~   56 (126)
                      ..+.+++||                       ++|++++..++..+++                     +|+++++|+|+
T Consensus        93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~  172 (255)
T 3c5h_A           93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV  172 (255)
T ss_dssp             ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred             cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence            557899999                       7888888888888887                     79999999999


Q ss_pred             CCc--ccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccC-CceEEEEeeeeeCC
Q psy6566          57 TDR--ERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKK-QQWHIQSCCALTGE  126 (126)
Q Consensus        57 ~~~--~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~  126 (126)
                      +++  .+++.+..|+..+.+.....++|+++|+||+|+...   ..+..  ...+... .+++++++||++|.
T Consensus       173 t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~---~~v~~--~~~~~~~~~~~~~~e~SAk~g~  240 (255)
T 3c5h_A          173 SRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVE---RYIRD--AHTFALSKKNLQVVETSARSNV  240 (255)
T ss_dssp             BC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCH---HHHHH--HHHHHHTSSSCCEEECBTTTTB
T ss_pred             CCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccccc---HHHHH--HHHHHHhcCCCeEEEEECCCCC
Confidence            998  899999988877765322257899999999998653   22211  1111222 36789999999873

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.64  E-value=1.8e-16  Score=98.41  Aligned_cols=116  Identities=19%  Similarity=0.174  Sum_probs=73.0

Q ss_pred             CcccCCccCceEEEEEE-CCEEEEEEEcCC----------CcchHHHHHhhccCC---cEEEEEEECCCcccHHH--HHH
Q psy6566           4 VVHTSPTIGSNVEEVIW-KNIHFIMWDLGG----------QQSLRAAWSTYYTNT---EFVILVIDSTDRERISL--TKE   67 (126)
Q Consensus         4 ~~~~~pTi~~~~~~~~~-~~~~~~i~Dt~G----------~~~~~~~~~~~~~~~---~~~l~v~d~~~~~~~~~--~~~   67 (126)
                      +..+.||.+........ .+..+.+|||||          ++.+...+..+++.+   +++++|+|+++..+...  ...
T Consensus        48 ~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~  127 (195)
T 3pqc_A           48 IAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVE  127 (195)
T ss_dssp             CSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHH
T ss_pred             cccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHH
Confidence            34566777744322222 345688999999          777888888887766   99999999887543332  222


Q ss_pred             HHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          68 ELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        68 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+.    .   .+.|+++++||+|+......................++++++||++|+
T Consensus       128 ~~~----~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  179 (195)
T 3pqc_A          128 WMK----S---LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGE  179 (195)
T ss_dssp             HHH----H---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCT
T ss_pred             HHH----H---cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCC
Confidence            222    2   268999999999997643222222222111112244689999999874

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.64  E-value=6.2e-17  Score=100.92  Aligned_cols=115  Identities=22%  Similarity=0.313  Sum_probs=84.1

Q ss_pred             ccCCccCce--EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++..  ...+.+++  +.+.+||++|++++...+..+++.++++++|+|.++..+++.+..|+..+... ...+.
T Consensus        57 ~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~  135 (191)
T 1oix_A           57 ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH-ADSNI  135 (191)
T ss_dssp             SCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTC
T ss_pred             CCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCC
Confidence            677999954  45666765  45678999999999888888999999999999999988888887776654332 12568


Q ss_pred             eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+...  ..... ..    ..+...++.++++||+++.
T Consensus       136 ~i~~v~nK~Dl~~~~~~~~~~-a~----~l~~~~~~~~ld~Sald~~  177 (191)
T 1oix_A          136 VIMLVGNKSDLRHLRAVPTDE-AR----AFAEKNGLSFIETSALDST  177 (191)
T ss_dssp             EEEEEEECGGGGGGCCSCHHH-HH----HHHHHTTCEEEECCTTTCT
T ss_pred             cEEEEEECcccccccccCHHH-HH----HHHHHcCCEEEEEeCCCCC
Confidence            99999999998642  22222 11    1223345689999999863

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.61  E-value=1.2e-16  Score=113.28  Aligned_cols=111  Identities=23%  Similarity=0.309  Sum_probs=73.2

Q ss_pred             ccCCccCceEEEEE--------E----CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHh
Q psy6566           6 HTSPTIGSNVEEVI--------W----KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKML   73 (126)
Q Consensus         6 ~~~pTi~~~~~~~~--------~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~   73 (126)
                      .+.||+|.+..+..        +    ++..+.+|||||++.+...+..+++.++++++|+|+++.+   ....|+..+.
T Consensus        69 ~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~~---~~~~~~~~l~  145 (535)
T 3dpu_A           69 KESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDS---NKHYWLRHIE  145 (535)
T ss_dssp             ------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGGG---GHHHHHHHHH
T ss_pred             CCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCch---hHHHHHHHHH
Confidence            67799997776542        2    3689999999999999999999999999999999987654   4445555554


Q ss_pred             CCCCCCCCeEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          74 NHEDLSKAAVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        74 ~~~~~~~~piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ...  ++.|+++|+||+|+....  ..+++....     ...+.+++++||++|.
T Consensus       146 ~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~vSA~~g~  193 (535)
T 3dpu_A          146 KYG--GKSPVIVVMNKIDENPSYNIEQKKINERF-----PAIENRFHRISCKNGD  193 (535)
T ss_dssp             HHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHC-----GGGTTCEEECCC----
T ss_pred             HhC--CCCCEEEEEECCCcccccccCHHHHHHHH-----HhcCCceEEEecCccc
Confidence            332  468999999999997532  233333322     2234579999999874

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.61  E-value=5.9e-15  Score=102.37  Aligned_cols=112  Identities=16%  Similarity=0.136  Sum_probs=75.0

Q ss_pred             ccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEec
Q psy6566          10 TIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANK   89 (126)
Q Consensus        10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK   89 (126)
                      |+......+..++..+.+|||||++.|...+..+++.+|++++|+|+++... .....++..+...   ...|+++++||
T Consensus        91 Ti~~~~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~---~~~~iIvviNK  166 (434)
T 1zun_B           91 TIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL---GIKHIVVAINK  166 (434)
T ss_dssp             CCCCEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCEEEEEEEC
T ss_pred             EEEeeeeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEEc
Confidence            4455555566688999999999999999988889999999999999987542 3334444333222   22369999999


Q ss_pred             CCCCCCCC--HHHHHhhcCcCccc-----CCceEEEEeeeeeCC
Q psy6566          90 QDIKNSMS--PVEISNLLDLTSIK-----KQQWHIQSCCALTGE  126 (126)
Q Consensus        90 ~D~~~~~~--~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~  126 (126)
                      +|+.+...  ..++..... .+.+     ...++++++||++|+
T Consensus       167 ~Dl~~~~~~~~~~i~~~~~-~~~~~~g~~~~~~~~i~vSA~~g~  209 (434)
T 1zun_B          167 MDLNGFDERVFESIKADYL-KFAEGIAFKPTTMAFVPMSALKGD  209 (434)
T ss_dssp             TTTTTSCHHHHHHHHHHHH-HHHHTTTCCCSEEEEEECCTTTCT
T ss_pred             CcCCcccHHHHHHHHHHHH-HHHHHhCCCccCceEEEEeccCCC
Confidence            99976211  111211111 1111     234789999999874

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.61  E-value=1.1e-15  Score=106.00  Aligned_cols=115  Identities=16%  Similarity=0.207  Sum_probs=72.4

Q ss_pred             CCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHH-------HHHHHHHhCCCCCCC
Q psy6566           8 SPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT-------KEELYKMLNHEDLSK   80 (126)
Q Consensus         8 ~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~-------~~~~~~~~~~~~~~~   80 (126)
                      .+|++.....+..++..+.+|||||++.|...+..+++.+|++++|+|+++ .+|+..       ..++......   ..
T Consensus        69 giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~---~~  144 (435)
T 1jny_A           69 GVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM---GL  144 (435)
T ss_dssp             --------CEEECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT---TC
T ss_pred             CceeEeeEEEEecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc---CC
Confidence            367776666777788999999999999999999999999999999999988 556533       3333222111   22


Q ss_pred             CeEEEEEecCCCCCC-CCH---HH----HHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          81 AAVLIYANKQDIKNS-MSP---VE----ISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        81 ~piilv~nK~D~~~~-~~~---~~----v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .|+++++||+|+.+. ...   +.    +...+.........++++++||++|+
T Consensus       145 ~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~  198 (435)
T 1jny_A          145 DQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGD  198 (435)
T ss_dssp             TTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTB
T ss_pred             CeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCc
Confidence            468999999999762 111   11    11111111111224789999999873

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.59  E-value=2.1e-14  Score=95.38  Aligned_cols=100  Identities=15%  Similarity=0.109  Sum_probs=68.6

Q ss_pred             EEEECCEEEEEEEcCCCcc--------hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEe
Q psy6566          17 EVIWKNIHFIMWDLGGQQS--------LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYAN   88 (126)
Q Consensus        17 ~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n   88 (126)
                      .+..++.++.+|||||+..        +......+++.+|++++|+|+++..+..  ..++...++... ++.|+++++|
T Consensus        49 i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~N  125 (301)
T 1wf3_A           49 ILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGN  125 (301)
T ss_dssp             EEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEE
T ss_pred             EEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEE
Confidence            3444889999999999876        5666778899999999999998764443  234444444321 4789999999


Q ss_pred             cCCCCCCCC-HHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          89 KQDIKNSMS-PVEISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        89 K~D~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      |+|+..... ..+....+      ....+++++||++|
T Consensus       126 K~Dl~~~~~~~~~~~~~~------~~~~~~~~iSA~~g  157 (301)
T 1wf3_A          126 KLDAAKYPEEAMKAYHEL------LPEAEPRMLSALDE  157 (301)
T ss_dssp             CGGGCSSHHHHHHHHHHT------STTSEEEECCTTCH
T ss_pred             CcccCCchHHHHHHHHHh------cCcCcEEEEeCCCC
Confidence            999975421 11112221      12236899999875

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.59  E-value=8e-16  Score=106.74  Aligned_cols=112  Identities=17%  Similarity=0.067  Sum_probs=76.9

Q ss_pred             ccCceEEEEEECCEEEEEEEcCCC----------cchHHHHH-hhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566          10 TIGSNVEEVIWKNIHFIMWDLGGQ----------QSLRAAWS-TYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL   78 (126)
Q Consensus        10 Ti~~~~~~~~~~~~~~~i~Dt~G~----------~~~~~~~~-~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~   78 (126)
                      |.+.....+.+++..+.+|||||+          +.|...+. .+++.+|++++|+|+++..++++. .|+..+..    
T Consensus       210 T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----  284 (436)
T 2hjg_A          210 TRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----  284 (436)
T ss_dssp             ----CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----
T ss_pred             eeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----
Confidence            333445667778889999999997          66665544 478899999999999998877765 34444432    


Q ss_pred             CCCeEEEEEecCCCCCCCC--HHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          79 SKAAVLIYANKQDIKNSMS--PVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        79 ~~~piilv~nK~D~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .+.|+++++||+|+.+...  .+++...+...+......+++++||++|.
T Consensus       285 ~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~  334 (436)
T 2hjg_A          285 AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKK  334 (436)
T ss_dssp             TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCT
T ss_pred             cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCC
Confidence            4689999999999976432  23333333222223345689999999884

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.59  E-value=5.4e-15  Score=102.70  Aligned_cols=114  Identities=20%  Similarity=0.219  Sum_probs=75.7

Q ss_pred             CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCccc---H---HHHHHHHHHHhCCCCCCCCe
Q psy6566           9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER---I---SLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~p   82 (126)
                      .|+......+..++..+.+|||||+++|...+..+++.+|++++|+|+++...   +   ......+.....    .++|
T Consensus        81 iTid~~~~~~~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~  156 (439)
T 3j2k_7           81 KTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVK  156 (439)
T ss_pred             ceEEEeEEEEecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCC
Confidence            45566666677788999999999999999999999999999999999987432   1   123333332222    3456


Q ss_pred             -EEEEEecCCCCCCC----CHHHHHhhcC-----cCcccCCceEEEEeeeeeCC
Q psy6566          83 -VLIYANKQDIKNSM----SPVEISNLLD-----LTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        83 -iilv~nK~D~~~~~----~~~~v~~~~~-----~~~~~~~~~~~~~~Sa~~~~  126 (126)
                       +++++||+|+....    ..+++...+.     ..+.....++++++||++|+
T Consensus       157 ~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~  210 (439)
T 3j2k_7          157 HLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGA  210 (439)
T ss_pred             eEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCc
Confidence             99999999986421    1112222111     01111125789999999884

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.59  E-value=5.1e-15  Score=103.88  Aligned_cols=115  Identities=17%  Similarity=0.132  Sum_probs=74.8

Q ss_pred             CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccH------HHHHHHHHHHhCCCCCCCCe
Q psy6566           9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERI------SLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~p   82 (126)
                      .|+......+..++..+.+|||||+++|...+..+++.+|++++|+|+++..+.      ......+... ...  ...|
T Consensus        97 iTi~~~~~~~~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~-~~~--~~~~  173 (483)
T 3p26_A           97 VTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-SSL--GIHN  173 (483)
T ss_dssp             SSCCCCEEEEECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHH-HHT--TCCC
T ss_pred             cceEeeeEEEecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHH-HHc--CCCc
Confidence            455566666777889999999999999999999999999999999999875432      1222222222 221  2357


Q ss_pred             EEEEEecCCCCCCC--CHHHHHhhcCc----CcccCCceEEEEeeeeeCC
Q psy6566          83 VLIYANKQDIKNSM--SPVEISNLLDL----TSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~~~--~~~~v~~~~~~----~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +++++||+|+.+..  ..+++...+..    .-.....++++++||++|+
T Consensus       174 iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~  223 (483)
T 3p26_A          174 LIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGE  223 (483)
T ss_dssp             EEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCT
T ss_pred             EEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCC
Confidence            99999999997621  11222221110    0011235789999999874

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.59  E-value=1.6e-14  Score=101.23  Aligned_cols=105  Identities=23%  Similarity=0.279  Sum_probs=75.8

Q ss_pred             CccCceEEEEEECCEEEEEEEcCCCc-chH--------HHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCC
Q psy6566           9 PTIGSNVEEVIWKNIHFIMWDLGGQQ-SLR--------AAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLS   79 (126)
Q Consensus         9 pTi~~~~~~~~~~~~~~~i~Dt~G~~-~~~--------~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~   79 (126)
                      +|..+....+.+++..+.+|||||++ .+.        .....+++.+|++++|+|++++.++++. ..+. .+     .
T Consensus       277 TT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~-~il~-~l-----~  349 (482)
T 1xzp_A          277 TTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDR-KILE-RI-----K  349 (482)
T ss_dssp             CSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHH-HHHH-HH-----T
T ss_pred             eeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHH-HHHH-Hh-----c
Confidence            35557778888899999999999987 542        2234578899999999999988777654 2333 32     3


Q ss_pred             CCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          80 KAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        80 ~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +.|+++++||+|+......+++.....      .+.+++++||++|+
T Consensus       350 ~~piivV~NK~DL~~~~~~~~~~~~~~------~~~~~i~iSAktg~  390 (482)
T 1xzp_A          350 NKRYLVVINKVDVVEKINEEEIKNKLG------TDRHMVKISALKGE  390 (482)
T ss_dssp             TSSEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEEEEGGGTC
T ss_pred             CCCEEEEEECcccccccCHHHHHHHhc------CCCcEEEEECCCCC
Confidence            689999999999976544444433221      22468999999874

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.59  E-value=6.6e-16  Score=107.70  Aligned_cols=109  Identities=17%  Similarity=0.113  Sum_probs=74.6

Q ss_pred             ceEEEEEECCEEEEEEEcCC----------CcchHHHHH-hhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566          13 SNVEEVIWKNIHFIMWDLGG----------QQSLRAAWS-TYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus        13 ~~~~~~~~~~~~~~i~Dt~G----------~~~~~~~~~-~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .....+..++..+.+|||||          ++.+...+. .+++.++++++|+|+++.... ....++ ..+..   .+.
T Consensus       233 ~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~-~~~~~~-~~~~~---~~~  307 (456)
T 4dcu_A          233 AVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIE-QDKRIA-GYAHE---AGK  307 (456)
T ss_dssp             TTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCH-HHHHHH-HHHHH---TTC
T ss_pred             EEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCH-HHHHHH-HHHHH---cCC
Confidence            44567778889999999999          788887765 478999999999999875432 223333 33333   468


Q ss_pred             eEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+....  ..+++.+............+++++||++|.
T Consensus       308 ~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~  354 (456)
T 4dcu_A          308 AVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKK  354 (456)
T ss_dssp             EEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCT
T ss_pred             CEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCc
Confidence            999999999997532  223333332222222234689999999874

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.59  E-value=6e-15  Score=98.24  Aligned_cols=111  Identities=14%  Similarity=0.076  Sum_probs=74.7

Q ss_pred             ccCceEEEEEEC-CEEEEEEEcCCCcch----------HHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566          10 TIGSNVEEVIWK-NIHFIMWDLGGQQSL----------RAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL   78 (126)
Q Consensus        10 Ti~~~~~~~~~~-~~~~~i~Dt~G~~~~----------~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~   78 (126)
                      |.......+..+ +..+.+|||||+...          ...+..+++.+|++++|+|+++..+..+...|+..+ ..   
T Consensus        45 T~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l-~~---  120 (308)
T 3iev_A           45 TRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFI-KP---  120 (308)
T ss_dssp             CCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHT-GG---
T ss_pred             eeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHH-Hh---
Confidence            333444445556 999999999998543          356677899999999999999888877766545544 33   


Q ss_pred             CCCeEEEEEecCCCC-CCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          79 SKAAVLIYANKQDIK-NSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        79 ~~~piilv~nK~D~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .+.|+++++||+|+. ...........+....  ....+++++||++|.
T Consensus       121 ~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~--~~~~~i~~vSA~~g~  167 (308)
T 3iev_A          121 LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH--PELTEIVPISALKGA  167 (308)
T ss_dssp             GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC--TTCCCEEECBTTTTB
T ss_pred             cCCCEEEEEECccCCCCHHHHHHHHHHHHHhc--cCCCeEEEEeCCCCC
Confidence            468999999999987 3222222222111110  122469999999873

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.58  E-value=3.3e-16  Score=97.37  Aligned_cols=84  Identities=25%  Similarity=0.353  Sum_probs=67.1

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccC----CcEEEEEEECC-CcccHHHHHHHHHHHhCCC---CCCCCeEEEEEecCCC
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTN----TEFVILVIDST-DRERISLTKEELYKMLNHE---DLSKAAVLIYANKQDI   92 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~----~~~~l~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~piilv~nK~D~   92 (126)
                      ....+.+|||||++.+...+..+++.    ++++++|+|++ ++.++.....|+..++...   ...+.|+++++||+|+
T Consensus        89 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  168 (193)
T 2ged_A           89 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL  168 (193)
T ss_dssp             CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred             cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHh
Confidence            56789999999999988777777765    89999999999 8889998888887776432   1257999999999999


Q ss_pred             CCCCCHHHHHhh
Q psy6566          93 KNSMSPVEISNL  104 (126)
Q Consensus        93 ~~~~~~~~v~~~  104 (126)
                      .+.....++...
T Consensus       169 ~~~~~~~~~~~~  180 (193)
T 2ged_A          169 FTARPPSKIKDA  180 (193)
T ss_dssp             TTCCCHHHHHHH
T ss_pred             cCCCCHHHHHHH
Confidence            876555555443

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.58  E-value=9e-15  Score=102.37  Aligned_cols=103  Identities=17%  Similarity=0.138  Sum_probs=61.6

Q ss_pred             ccCceEEEEEECCEEEEEEEcCCCcchHHHH--------HhhccCCcEEEEEEECCCcccHHH---HHHHHHHHhCCCCC
Q psy6566          10 TIGSNVEEVIWKNIHFIMWDLGGQQSLRAAW--------STYYTNTEFVILVIDSTDRERISL---TKEELYKMLNHEDL   78 (126)
Q Consensus        10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------~~~~~~~~~~l~v~d~~~~~~~~~---~~~~~~~~~~~~~~   78 (126)
                      |..+....+.+++..+.+|||||++.+...+        ..+++.+|++++|+|++++.++..   ...++..+      
T Consensus       268 T~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l------  341 (476)
T 3gee_A          268 TRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH------  341 (476)
T ss_dssp             -----CEEEEETTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC------
T ss_pred             eEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc------
Confidence            3446667788899999999999998776544        336789999999999999877753   33333222      


Q ss_pred             CCCeEEEEEecCCCCCCCCHHH--HHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          79 SKAAVLIYANKQDIKNSMSPVE--ISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        79 ~~~piilv~nK~D~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .+.|+++|+||+|+........  +...        ...+++++||++|+
T Consensus       342 ~~~piIvV~NK~Dl~~~~~~~~~~l~~~--------~~~~~i~vSAktg~  383 (476)
T 3gee_A          342 PAAKFLTVANKLDRAANADALIRAIADG--------TGTEVIGISALNGD  383 (476)
T ss_dssp             TTSEEEEEEECTTSCTTTHHHHHHHHHH--------HTSCEEECBTTTTB
T ss_pred             CCCCEEEEEECcCCCCccchhHHHHHhc--------CCCceEEEEECCCC
Confidence            3689999999999976532211  1111        01368999999874

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.57  E-value=1.6e-16  Score=98.32  Aligned_cols=118  Identities=12%  Similarity=0.153  Sum_probs=73.1

Q ss_pred             ccCCccCceEEEEEECCEEEEEEEcCC-----------CcchHHHHHhhccC-CcEEEEEEECCCcccHHHH-HHHHHH-
Q psy6566           6 HTSPTIGSNVEEVIWKNIHFIMWDLGG-----------QQSLRAAWSTYYTN-TEFVILVIDSTDRERISLT-KEELYK-   71 (126)
Q Consensus         6 ~~~pTi~~~~~~~~~~~~~~~i~Dt~G-----------~~~~~~~~~~~~~~-~~~~l~v~d~~~~~~~~~~-~~~~~~-   71 (126)
                      .+.|++......+.+.  .+.+|||||           ++.+...+..+++. ++++++++++.+..++..+ ..|... 
T Consensus        29 ~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~  106 (190)
T 2cxx_A           29 GKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRG  106 (190)
T ss_dssp             SSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTT
T ss_pred             CCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccC
Confidence            5667777666666666  689999999           77888888888776 6666556665556677666 233221 


Q ss_pred             -------HhCCCCCCCCeEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          72 -------MLNHEDLSKAAVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        72 -------~~~~~~~~~~piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                             +.......++|+++++||+|+....  ...++...++..+. ....+++++||++|+
T Consensus       107 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~  169 (190)
T 2cxx_A          107 EIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLS-EIDKVFIPISAKFGD  169 (190)
T ss_dssp             CCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGG-GHHHHEEECCTTTCT
T ss_pred             ccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhhh-ccCCcEEEEecCCCC
Confidence                   1111111478999999999997642  11223333322110 012358999999874

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.57  E-value=5e-16  Score=96.09  Aligned_cols=104  Identities=18%  Similarity=0.247  Sum_probs=72.9

Q ss_pred             cCCccC--ceEEEEEECCEEEEEEEcCCCcchH------HHHHhhcc--CCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566           7 TSPTIG--SNVEEVIWKNIHFIMWDLGGQQSLR------AAWSTYYT--NTEFVILVIDSTDRERISLTKEELYKMLNHE   76 (126)
Q Consensus         7 ~~pTi~--~~~~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~~~--~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~   76 (126)
                      +.|++.  .....+.+++..+.+|||||++.+.      ..+..+++  .++++++++|.++   ++....|+..+..  
T Consensus        36 ~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~--  110 (188)
T 2wjg_A           36 NWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME--  110 (188)
T ss_dssp             ECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT--
T ss_pred             CCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh--
Confidence            445555  4455666789999999999998874      45666664  5999999999764   5566666666644  


Q ss_pred             CCCCCeEEEEEecCCCCCC----CCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          77 DLSKAAVLIYANKQDIKNS----MSPVEISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                        .+.|+++++||+|+...    ....++...        .+++++++||++|
T Consensus       111 --~~~piilv~nK~Dl~~~~~~~~~~~~~~~~--------~~~~~~~~Sa~~~  153 (188)
T 2wjg_A          111 --MGANLLLALNKMDLAKSLGIEIDVDKLEKI--------LGVKVVPLSAAKK  153 (188)
T ss_dssp             --TTCCEEEEEECHHHHHHTTCCCCHHHHHHH--------HTSCEEECBGGGT
T ss_pred             --cCCCEEEEEEhhhccccccchHHHHHHHHH--------hCCCeEEEEecCC
Confidence              46899999999997532    112222222        2357999999987

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.56  E-value=1.8e-15  Score=95.98  Aligned_cols=101  Identities=13%  Similarity=0.075  Sum_probs=64.5

Q ss_pred             CCEEEEEEEcCC----------CcchHHHHHhhccC---CcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEE
Q psy6566          21 KNIHFIMWDLGG----------QQSLRAAWSTYYTN---TEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYA   87 (126)
Q Consensus        21 ~~~~~~i~Dt~G----------~~~~~~~~~~~~~~---~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~   87 (126)
                      ++..+.+|||||          ++.+......+++.   ++++++|+|+++..+.. ...++ ..+..   .+.|+++|+
T Consensus        77 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~-~~l~~---~~~p~i~v~  151 (223)
T 4dhe_A           77 AEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMI-EWFAP---TGKPIHSLL  151 (223)
T ss_dssp             TSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHH-HHHGG---GCCCEEEEE
T ss_pred             CCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHH-HHHHh---cCCCEEEEE
Confidence            568899999999          45556666667665   78899999998753322 22233 33333   468999999


Q ss_pred             ecCCCCCCCCHHHHHhhcCcCccc------CCceEEEEeeeeeCC
Q psy6566          88 NKQDIKNSMSPVEISNLLDLTSIK------KQQWHIQSCCALTGE  126 (126)
Q Consensus        88 nK~D~~~~~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~~~  126 (126)
                      ||+|+...................      ....+++++||++|+
T Consensus       152 nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~  196 (223)
T 4dhe_A          152 TKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRT  196 (223)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTB
T ss_pred             eccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCc
Confidence            999987632211111111111111      356789999999873

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.56  E-value=3e-16  Score=109.67  Aligned_cols=116  Identities=18%  Similarity=0.168  Sum_probs=61.6

Q ss_pred             cCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcc---cHH---HHHHHHHHHhCCCCCCC
Q psy6566           7 TSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE---RIS---LTKEELYKMLNHEDLSK   80 (126)
Q Consensus         7 ~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~   80 (126)
                      ..+|++.....+..++..+.+|||||++.|......+++.+|++++|+|+++..   +|+   .....+.... .   .+
T Consensus       105 ~giTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~-~---~~  180 (467)
T 1r5b_A          105 KGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR-T---QG  180 (467)
T ss_dssp             --------CCEEECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH-H---TT
T ss_pred             cCceEEeeeEEEecCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH-H---cC
Confidence            457888777778888999999999999999998888899999999999998752   221   1222222221 1   35


Q ss_pred             Ce-EEEEEecCCCCCCC-CH---HH----HHhhcCcC-ccc-CCceEEEEeeeeeCC
Q psy6566          81 AA-VLIYANKQDIKNSM-SP---VE----ISNLLDLT-SIK-KQQWHIQSCCALTGE  126 (126)
Q Consensus        81 ~p-iilv~nK~D~~~~~-~~---~~----v~~~~~~~-~~~-~~~~~~~~~Sa~~~~  126 (126)
                      +| +++++||+|+.... +.   +.    +...+... -.. ...++++++||++|+
T Consensus       181 vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~  237 (467)
T 1r5b_A          181 INHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQ  237 (467)
T ss_dssp             CSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTB
T ss_pred             CCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccc
Confidence            66 99999999996421 11   11    11111100 000 125789999999873

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.56  E-value=5.1e-16  Score=101.01  Aligned_cols=100  Identities=19%  Similarity=0.124  Sum_probs=69.5

Q ss_pred             CceEEEEEECCEEEEEEEcCCCcchHH----------HHHhhc--cCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCC
Q psy6566          12 GSNVEEVIWKNIHFIMWDLGGQQSLRA----------AWSTYY--TNTEFVILVIDSTDRERISLTKEELYKMLNHEDLS   79 (126)
Q Consensus        12 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~~~--~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~   79 (126)
                      +.....+.+++..+.+|||||+..+..          ....++  +.+|++++|+|+++.++..   .+...+..    .
T Consensus        37 ~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~---~l~~~l~~----~  109 (256)
T 3iby_A           37 EKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHL---YLTSQLFE----L  109 (256)
T ss_dssp             EEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHH---HHHHHHTT----S
T ss_pred             EEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHH---HHHHHHHH----c
Confidence            345566677889999999999977653          556677  8999999999998754433   33333332    3


Q ss_pred             CCeEEEEEecCCCCCCC----CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          80 KAAVLIYANKQDIKNSM----SPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        80 ~~piilv~nK~D~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ++|+++++||+|+....    ....+...        .+++++++||++|.
T Consensus       110 ~~pvilv~NK~Dl~~~~~~~~~~~~l~~~--------lg~~vi~~SA~~g~  152 (256)
T 3iby_A          110 GKPVVVALNMMDIAEHRGISIDTEKLESL--------LGCSVIPIQAHKNI  152 (256)
T ss_dssp             CSCEEEEEECHHHHHHTTCEECHHHHHHH--------HCSCEEECBGGGTB
T ss_pred             CCCEEEEEEChhcCCcCCcHHHHHHHHHH--------cCCCEEEEECCCCC
Confidence            68999999999975421    12222222        24579999999873

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.54  E-value=8.7e-15  Score=100.67  Aligned_cols=99  Identities=18%  Similarity=0.119  Sum_probs=72.1

Q ss_pred             EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHH--
Q psy6566          23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVE--  100 (126)
Q Consensus        23 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--  100 (126)
                      ..+.+|||||++.|......++..+|++++|+|+++..++.....++..+...   ...|+++++||+|+.+.....+  
T Consensus        75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~  151 (403)
T 3sjy_A           75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQY  151 (403)
T ss_dssp             EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred             ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHH
Confidence            78999999999999999999999999999999999876677776666544322   2358999999999976321111  


Q ss_pred             --HHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566         101 --ISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus       101 --v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                        +...+...  ....++++++||++|+
T Consensus       152 ~~i~~~l~~~--~~~~~~ii~vSA~~g~  177 (403)
T 3sjy_A          152 RQIKQFTKGT--WAENVPIIPVSALHKI  177 (403)
T ss_dssp             HHHHHHHTTS--TTTTCCEEECBTTTTB
T ss_pred             HHHHHHHHhh--CCCCCEEEEEECCCCc
Confidence              22211111  1235689999999874

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.54  E-value=8.6e-15  Score=101.08  Aligned_cols=106  Identities=15%  Similarity=0.163  Sum_probs=72.0

Q ss_pred             CccCceEEEEEECCE-EEEEEEcCCCcchHHH-------HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCC
Q psy6566           9 PTIGSNVEEVIWKNI-HFIMWDLGGQQSLRAA-------WSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK   80 (126)
Q Consensus         9 pTi~~~~~~~~~~~~-~~~i~Dt~G~~~~~~~-------~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~   80 (126)
                      +|+......+.+.+. .+.+|||||++.+...       ...+++.+|++++|+|+...+   ....|+..+.+.    +
T Consensus        68 tT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~----~  140 (423)
T 3qq5_A           68 TTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTP---YEDDVVNLFKEM----E  140 (423)
T ss_dssp             --CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCCH---HHHHHHHHHHHT----T
T ss_pred             eeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCChH---HHHHHHHHHHhc----C
Confidence            455566777777554 9999999999776433       455789999999999983322   234444444332    6


Q ss_pred             CeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          81 AAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        81 ~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +|+++|+||+|+...... +....+    ....+++++++||++|.
T Consensus       141 ~piIvV~NK~Dl~~~~~~-~~~~~l----~~~~g~~v~~vSAktg~  181 (423)
T 3qq5_A          141 IPFVVVVNKIDVLGEKAE-ELKGLY----ESRYEAKVLLVSALQKK  181 (423)
T ss_dssp             CCEEEECCCCTTTTCCCT-HHHHHS----SCCTTCCCCCCSSCCTT
T ss_pred             CCEEEEEeCcCCCCccHH-HHHHHH----HHHcCCCEEEEECCCCC
Confidence            899999999999875432 222222    23445689999999874

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.53  E-value=4.4e-14  Score=97.29  Aligned_cols=99  Identities=20%  Similarity=0.133  Sum_probs=61.2

Q ss_pred             EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCC----H
Q psy6566          23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMS----P   98 (126)
Q Consensus        23 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----~   98 (126)
                      ..+.+|||||++.|.......+..+|++++|+|+++........+++..+...   ...|+++++||+|+.....    .
T Consensus        81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l---~~~~iivv~NK~Dl~~~~~~~~~~  157 (408)
T 1s0u_A           81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL---GIDKIIIVQNKIDLVDEKQAEENY  157 (408)
T ss_dssp             EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECTTSSCTTTTTTHH
T ss_pred             cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc---CCCeEEEEEEccCCCCHHHHHHHH
Confidence            78999999999999988888888999999999998642122222222222111   2358999999999976422    2


Q ss_pred             HHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          99 VEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        99 ~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +++...+...  ....++++++||++|+
T Consensus       158 ~~i~~~l~~~--~~~~~~~i~vSA~~g~  183 (408)
T 1s0u_A          158 EQIKEFVKGT--IAENAPIIPISAHHEA  183 (408)
T ss_dssp             HHHHHHHTTS--TTTTCCEEEC------
T ss_pred             HHHHHHHhhc--CCCCCeEEEeeCCCCC
Confidence            2333332211  1235689999999874

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.53  E-value=1.1e-14  Score=100.20  Aligned_cols=111  Identities=18%  Similarity=0.170  Sum_probs=74.4

Q ss_pred             ccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEe
Q psy6566          10 TIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLIYAN   88 (126)
Q Consensus        10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~n   88 (126)
                      |+......+..++..+.+|||||++.|......+++.+|++++|+|+++... .....++..+..    .++| +++++|
T Consensus        62 Ti~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~----~~ip~iivviN  136 (405)
T 2c78_A           62 TINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFMN  136 (405)
T ss_dssp             CCSCEEEEEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHH----TTCCCEEEEEE
T ss_pred             CEEeeeeEeccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEE
Confidence            4444444455577899999999999999988889999999999999987643 344555554432    3577 899999


Q ss_pred             cCCCCCCCC-HHH----HHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          89 KQDIKNSMS-PVE----ISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        89 K~D~~~~~~-~~~----v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      |+|+..... .+.    +...+..........+++++||++|
T Consensus       137 K~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g  178 (405)
T 2c78_A          137 KVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLA  178 (405)
T ss_dssp             CGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHH
T ss_pred             CccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHh
Confidence            999975211 111    1111111111122468999999876

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.52  E-value=8.1e-15  Score=102.28  Aligned_cols=115  Identities=17%  Similarity=0.102  Sum_probs=76.6

Q ss_pred             CCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcc---cHH---HHHHHHHHHhCCCCCCCC
Q psy6566           8 SPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE---RIS---LTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         8 ~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~   81 (126)
                      ..|++.....+..++..+.+|||||++.|...+..+++.+|++++|+|+++..   +|+   ....++.... .   .++
T Consensus        70 GiTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~-~---~~v  145 (458)
T 1f60_A           70 GITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAF-T---LGV  145 (458)
T ss_dssp             TCCCSCSCEEEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHH-H---TTC
T ss_pred             CcEEEEEEEEEecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHH-H---cCC
Confidence            46788777777778899999999999999999999999999999999998642   121   2333333222 2   345


Q ss_pred             e-EEEEEecCCCCCCC--CHHHHHhhcC----cCcccCCceEEEEeeeeeCC
Q psy6566          82 A-VLIYANKQDIKNSM--SPVEISNLLD----LTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 p-iilv~nK~D~~~~~--~~~~v~~~~~----~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      | +++++||+|+.+..  ..+++.....    ........++++++||++|+
T Consensus       146 ~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~  197 (458)
T 1f60_A          146 RQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGD  197 (458)
T ss_dssp             CEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCB
T ss_pred             CeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCc
Confidence            4 99999999997411  1111211111    00001124689999999873

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.51  E-value=5.3e-15  Score=96.30  Aligned_cols=99  Identities=22%  Similarity=0.274  Sum_probs=68.6

Q ss_pred             ceEEEEEECCEEEEEEEcCCCcchHH------HHHhhc--cCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEE
Q psy6566          13 SNVEEVIWKNIHFIMWDLGGQQSLRA------AWSTYY--TNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVL   84 (126)
Q Consensus        13 ~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~--~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii   84 (126)
                      .....+..++..+.+|||||+..+..      ....++  ..+|++++|+|+++.++   ...|+.++.+    .++|++
T Consensus        42 ~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~---~~~~~~~l~~----~~~pvi  114 (258)
T 3a1s_A           42 KKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQ---SLYLLLEILE----MEKKVI  114 (258)
T ss_dssp             EEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHH---HHHHHHHHHT----TTCCEE
T ss_pred             EEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhh---HHHHHHHHHh----cCCCEE
Confidence            34444555789999999999987753      334555  58999999999987654   3345555544    368999


Q ss_pred             EEEecCCCCCC----CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          85 IYANKQDIKNS----MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        85 lv~nK~D~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +++||+|+...    .....+...        .+++++++||++|.
T Consensus       115 lv~NK~Dl~~~~~i~~~~~~l~~~--------lg~~vi~~SA~~g~  152 (258)
T 3a1s_A          115 LAMTAIDEAKKTGMKIDRYELQKH--------LGIPVVFTSSVTGE  152 (258)
T ss_dssp             EEEECHHHHHHTTCCBCHHHHHHH--------HCSCEEECCTTTCT
T ss_pred             EEEECcCCCCccchHHHHHHHHHH--------cCCCEEEEEeeCCc
Confidence            99999997531    112223322        24679999999874

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.51  E-value=1.1e-14  Score=104.65  Aligned_cols=115  Identities=17%  Similarity=0.135  Sum_probs=75.2

Q ss_pred             CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcc---c---HHHHHHHHHHHhCCCCCCCCe
Q psy6566           9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE---R---ISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~---~---~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      .|+......+...+..+.+|||||++.|......+++.+|++|+|+|+++..   +   .......+... ...  ...|
T Consensus       231 iTid~~~~~~~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~-~~l--gi~~  307 (611)
T 3izq_1          231 VTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-SSL--GIHN  307 (611)
T ss_dssp             TCCSCSCCEEECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHH-HTT--TCCE
T ss_pred             eeEeeeeEEEecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHH-HHc--CCCe
Confidence            4666666777778899999999999999999999999999999999998631   0   01222222222 221  2346


Q ss_pred             EEEEEecCCCCCCC--CHHHHHhhcCc----CcccCCceEEEEeeeeeCC
Q psy6566          83 VLIYANKQDIKNSM--SPVEISNLLDL----TSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~~~--~~~~v~~~~~~----~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +++++||+|+.+..  ..+++...+..    .-.....++++++||++|+
T Consensus       308 iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~  357 (611)
T 3izq_1          308 LIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGE  357 (611)
T ss_dssp             EEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCT
T ss_pred             EEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCC
Confidence            99999999997621  11122211110    0011225689999999874

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.51  E-value=1.9e-13  Score=96.80  Aligned_cols=82  Identities=15%  Similarity=0.175  Sum_probs=66.5

Q ss_pred             CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEe
Q psy6566           9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYAN   88 (126)
Q Consensus         9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n   88 (126)
                      .|+......+..++..+.+|||||++.|...+..+++.+|++++|+|+++........ +|..+..    .++|+++++|
T Consensus        68 iTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~-~~~~~~~----~~iPiivviN  142 (528)
T 3tr5_A           68 ISVTTSVMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK-LMEVCRL----RHTPIMTFIN  142 (528)
T ss_dssp             CSSSSSEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH-HHHHHHT----TTCCEEEEEE
T ss_pred             eeEEEeEEEEEeCCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEe
Confidence            4556666777779999999999999999999999999999999999999866555443 4444433    3689999999


Q ss_pred             cCCCCCC
Q psy6566          89 KQDIKNS   95 (126)
Q Consensus        89 K~D~~~~   95 (126)
                      |+|+...
T Consensus       143 K~Dl~~~  149 (528)
T 3tr5_A          143 KMDRDTR  149 (528)
T ss_dssp             CTTSCCS
T ss_pred             CCCCccc
Confidence            9999764

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.51  E-value=2.3e-14  Score=98.39  Aligned_cols=112  Identities=24%  Similarity=0.169  Sum_probs=73.7

Q ss_pred             CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEE
Q psy6566           9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLIYA   87 (126)
Q Consensus         9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~   87 (126)
                      .|++.....+..++..+.+|||||++.|......+++.+|++++|+|+++.... ....++..+. .   .++| +++++
T Consensus        52 iTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~e~l~~~~-~---~~vp~iivvi  126 (397)
T 1d2e_A           52 ITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMP-QTREHLLLAR-Q---IGVEHVVVYV  126 (397)
T ss_dssp             EEEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCH-HHHHHHHHHH-H---TTCCCEEEEE
T ss_pred             cEEEeeeEEeccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCH-HHHHHHHHHH-H---cCCCeEEEEE
Confidence            455554444555778999999999999998888899999999999999875433 3334443332 2   3578 78999


Q ss_pred             ecCCCCCCCC-HH----HHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          88 NKQDIKNSMS-PV----EISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        88 nK~D~~~~~~-~~----~v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      ||+|+..... .+    ++.+.+.........++++++||++|
T Consensus       127 NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g  169 (397)
T 1d2e_A          127 NKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCA  169 (397)
T ss_dssp             ECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHH
T ss_pred             ECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhc
Confidence            9999975211 11    11111111111122468999999874

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.50  E-value=3.6e-15  Score=97.83  Aligned_cols=99  Identities=17%  Similarity=0.172  Sum_probs=66.5

Q ss_pred             CceEEEEEECCEEEEEEEcCCCcchH----------HHHHhhc--cCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCC
Q psy6566          12 GSNVEEVIWKNIHFIMWDLGGQQSLR----------AAWSTYY--TNTEFVILVIDSTDRERISLTKEELYKMLNHEDLS   79 (126)
Q Consensus        12 ~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~~--~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~   79 (126)
                      ......+...+..+.+|||||+..+.          ..+..++  +.+|++++|+|+++.++..   .+...+.+    .
T Consensus        39 ~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~---~~~~~l~~----~  111 (274)
T 3i8s_A           39 ERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNL---YLTLQLLE----L  111 (274)
T ss_dssp             EEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHH---HHHHHHHH----H
T ss_pred             EEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHH---HHHHHHHh----c
Confidence            34445566678899999999987765          2334443  7999999999998755443   33333332    2


Q ss_pred             CCeEEEEEecCCCCCCC----CHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          80 KAAVLIYANKQDIKNSM----SPVEISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        80 ~~piilv~nK~D~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      ++|+++++||+|+....    ....+...        .+++++++||++|
T Consensus       112 ~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~--------lg~~~i~~SA~~g  153 (274)
T 3i8s_A          112 GIPCIVALNMLDIAEKQNIRIEIDALSAR--------LGCPVIPLVSTRG  153 (274)
T ss_dssp             TCCEEEEEECHHHHHHTTEEECHHHHHHH--------HTSCEEECCCGGG
T ss_pred             CCCEEEEEECccchhhhhHHHHHHHHHHh--------cCCCEEEEEcCCC
Confidence            68999999999975421    11222222        2457999999987

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.50  E-value=1.5e-13  Score=98.50  Aligned_cols=98  Identities=16%  Similarity=0.149  Sum_probs=69.6

Q ss_pred             CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHH
Q psy6566          22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEI  101 (126)
Q Consensus        22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v  101 (126)
                      +..+.+|||||++.|...+..+++.+|++++|+|+++..+......|.. ...    .++|+++++||+|+.+.. .+++
T Consensus        70 ~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~-~~~----~~ipiIvViNKiDl~~a~-~~~v  143 (599)
T 3cb4_D           70 TYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYT-AME----MDLEVVPVLNKIDLPAAD-PERV  143 (599)
T ss_dssp             EEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHH-HHH----TTCEEEEEEECTTSTTCC-HHHH
T ss_pred             eEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH-HHH----CCCCEEEeeeccCccccc-HHHH
Confidence            3789999999999999999999999999999999998766665554433 332    368999999999997643 2322


Q ss_pred             HhhcCcCcccCCceEEEEeeeeeCC
Q psy6566         102 SNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ...+.... .....+++++||++|.
T Consensus       144 ~~ei~~~l-g~~~~~vi~vSAktg~  167 (599)
T 3cb4_D          144 AEEIEDIV-GIDATDAVRCSAKTGV  167 (599)
T ss_dssp             HHHHHHHT-CCCCTTCEEECTTTCT
T ss_pred             HHHHHHHh-CCCcceEEEeecccCC
Confidence            22211110 0111137999999873

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.50  E-value=2e-13  Score=97.78  Aligned_cols=97  Identities=12%  Similarity=0.071  Sum_probs=69.7

Q ss_pred             EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHH
Q psy6566          23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEIS  102 (126)
Q Consensus        23 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~  102 (126)
                      ..+.+|||||++.|...+..+++.+|++++|+|+++..+.+....|.. ...    .++|+++++||+|+.+.. .+++.
T Consensus        73 ~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~-a~~----~~ipiIvviNKiDl~~a~-~~~v~  146 (600)
T 2ywe_A           73 YKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWK-AVE----QDLVIIPVINKIDLPSAD-VDRVK  146 (600)
T ss_dssp             EEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHH-HHH----TTCEEEEEEECTTSTTCC-HHHHH
T ss_pred             EEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHH-HHH----CCCCEEEEEeccCccccC-HHHHH
Confidence            789999999999999999999999999999999998777666555433 332    468999999999997643 33322


Q ss_pred             hhcCcCcccCCceEEEEeeeeeCC
Q psy6566         103 NLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ..+.... .....+++++||++|.
T Consensus       147 ~el~~~l-g~~~~~vi~vSAktg~  169 (600)
T 2ywe_A          147 KQIEEVL-GLDPEEAILASAKEGI  169 (600)
T ss_dssp             HHHHHTS-CCCGGGCEECBTTTTB
T ss_pred             HHHHHhh-CCCcccEEEEEeecCC
Confidence            2221110 0111247999999873

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.50  E-value=1.3e-14  Score=101.73  Aligned_cols=114  Identities=16%  Similarity=0.177  Sum_probs=72.8

Q ss_pred             CCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEE
Q psy6566           8 SPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYA   87 (126)
Q Consensus         8 ~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~   87 (126)
                      ..|++.....+.+++..+.+|||||++.|......++..+|++++|+|+++... .....++..+ +.   .++|.++++
T Consensus        58 GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~-~qt~e~l~~~-~~---~~ip~Ivvi  132 (482)
T 1wb1_A           58 GITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPK-TQTGEHMLIL-DH---FNIPIIVVI  132 (482)
T ss_dssp             ------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSC-HHHHHHHHHH-HH---TTCCBCEEE
T ss_pred             ccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCcc-HHHHHHHHHH-HH---cCCCEEEEE
Confidence            357777777788889999999999999999998889999999999999987321 1222222222 22   357889999


Q ss_pred             ecCCCCCCCCHHHHHhhcCcCccc---CCceEEEEeeeeeCC
Q psy6566          88 NKQDIKNSMSPVEISNLLDLTSIK---KQQWHIQSCCALTGE  126 (126)
Q Consensus        88 nK~D~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~Sa~~~~  126 (126)
                      ||+|+.++...+++..........   ....+++++||++|+
T Consensus       133 NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~  174 (482)
T 1wb1_A          133 TKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGF  174 (482)
T ss_dssp             ECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCT
T ss_pred             ECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCC
Confidence            999997632112222211110000   115689999999874

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.50  E-value=2.9e-14  Score=97.05  Aligned_cols=110  Identities=10%  Similarity=-0.000  Sum_probs=76.6

Q ss_pred             ccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE-E
Q psy6566           6 HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV-L   84 (126)
Q Consensus         6 ~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi-i   84 (126)
                      ...+|++.....+..++..+.+|||||+++|.......++.+|++++|+| + ........+++..+..    .++|. +
T Consensus        43 ~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~-~g~~~qt~e~~~~~~~----~~i~~~i  116 (370)
T 2elf_A           43 KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-P-QGLDAHTGECIIALDL----LGFKHGI  116 (370)
T ss_dssp             EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T-TCCCHHHHHHHHHHHH----TTCCEEE
T ss_pred             hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C-CCCcHHHHHHHHHHHH----cCCCeEE
Confidence            34578888877777788899999999999998888888999999999999 4 3445556665554432    24666 8


Q ss_pred             EEEe-cCCCCCCCCHH----HHHhhcCcCcccCCceEEEE--eeeee
Q psy6566          85 IYAN-KQDIKNSMSPV----EISNLLDLTSIKKQQWHIQS--CCALT  124 (126)
Q Consensus        85 lv~n-K~D~~~~~~~~----~v~~~~~~~~~~~~~~~~~~--~Sa~~  124 (126)
                      +++| |+|+ +....+    ++.+.+...  ....+++++  +||++
T Consensus       117 vvvNNK~Dl-~~~~~~~~~~~i~~~l~~~--~~~~~~ii~~~~SA~~  160 (370)
T 2elf_A          117 IALTRSDST-HMHAIDELKAKLKVITSGT--VLQDWECISLNTNKSA  160 (370)
T ss_dssp             EEECCGGGS-CHHHHHHHHHHHHHHTTTS--TTTTCEEEECCCCTTS
T ss_pred             EEEEeccCC-CHHHHHHHHHHHHHHHHhc--CCCceEEEeccccccc
Confidence            8888 9999 421111    122222111  113478999  99998

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.49  E-value=1.4e-14  Score=97.67  Aligned_cols=112  Identities=21%  Similarity=0.196  Sum_probs=75.7

Q ss_pred             CccCceEEEEEECC-EEEEEEEcCCCcc----hHHHHHhh---ccCCcEEEEEEECCC---cccHHHHHHHHHHHhCCC-
Q psy6566           9 PTIGSNVEEVIWKN-IHFIMWDLGGQQS----LRAAWSTY---YTNTEFVILVIDSTD---RERISLTKEELYKMLNHE-   76 (126)
Q Consensus         9 pTi~~~~~~~~~~~-~~~~i~Dt~G~~~----~~~~~~~~---~~~~~~~l~v~d~~~---~~~~~~~~~~~~~~~~~~-   76 (126)
                      +|+..+...+.+.+ ..+.+|||||+..    +..+...+   ++.++++++|+|+++   ++++++...|+.++.... 
T Consensus       191 tTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~  270 (342)
T 1lnz_A          191 TTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNL  270 (342)
T ss_dssp             SCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCS
T ss_pred             cccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhh
Confidence            56666666677754 8999999999533    22233333   456999999999998   778888877776665432 


Q ss_pred             CCCCCeEEEEEecCCCCCCC-CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          77 DLSKAAVLIYANKQDIKNSM-SPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ...++|+++++||+|+.... ...++...+..      ..+++++||++++
T Consensus       271 ~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~------~~~v~~iSA~tg~  315 (342)
T 1lnz_A          271 RLTERPQIIVANKMDMPEAAENLEAFKEKLTD------DYPVFPISAVTRE  315 (342)
T ss_dssp             STTTSCBCBEEECTTSTTHHHHHHHHHHHCCS------CCCBCCCSSCCSS
T ss_pred             hhcCCCEEEEEECccCCCCHHHHHHHHHHhhc------CCCEEEEECCCCc
Confidence            23579999999999987531 01122222221      1568999999874

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.49  E-value=3e-14  Score=98.86  Aligned_cols=106  Identities=19%  Similarity=0.251  Sum_probs=63.4

Q ss_pred             CCccCceE----EEEEECCEEEEEEEcCCCc--------chHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCC
Q psy6566           8 SPTIGSNV----EEVIWKNIHFIMWDLGGQQ--------SLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNH   75 (126)
Q Consensus         8 ~pTi~~~~----~~~~~~~~~~~i~Dt~G~~--------~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~   75 (126)
                      .+|.|...    ..+.+++..+.+|||||++        .+..++..+++.||++++|+|+.+..+..+  .++...++.
T Consensus        32 ~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~~  109 (436)
T 2hjg_A           32 EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILYR  109 (436)
T ss_dssp             ---------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHTT
T ss_pred             cCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHHH
Confidence            44555432    3333377899999999986        677788889999999999999987655543  356666654


Q ss_pred             CCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCce-EEEEeeeeeCC
Q psy6566          76 EDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQW-HIQSCCALTGE  126 (126)
Q Consensus        76 ~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~  126 (126)
                         .+.|+++++||+|+....  .+     ...+. ..++ +++++||++|.
T Consensus       110 ---~~~pvilv~NK~D~~~~~--~~-----~~~~~-~lg~~~~~~iSA~~g~  150 (436)
T 2hjg_A          110 ---TKKPVVLAVNKLDNTEMR--AN-----IYDFY-SLGFGEPYPISGTHGL  150 (436)
T ss_dssp             ---CCSCEEEEEECCCC-------C-----CCSSG-GGSSCCCEECBTTTTB
T ss_pred             ---cCCCEEEEEECccCccch--hh-----HHHHH-HcCCCCeEEEeCcCCC
Confidence               578999999999986531  10     11111 1222 58999999873

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.49  E-value=1.5e-13  Score=95.52  Aligned_cols=103  Identities=17%  Similarity=0.218  Sum_probs=69.4

Q ss_pred             CceEEEEEECCEEEEEEEcCCCcc---------hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566          12 GSNVEEVIWKNIHFIMWDLGGQQS---------LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus        12 ~~~~~~~~~~~~~~~i~Dt~G~~~---------~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      ......+.+++..+.+|||||++.         +..++..+++.||++++|+|+.+..+..+  .++...++.   .++|
T Consensus        38 d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d--~~i~~~l~~---~~~p  112 (439)
T 1mky_A           38 DPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED--ESLADFLRK---STVD  112 (439)
T ss_dssp             CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH--HHHHHHHHH---HTCC
T ss_pred             ceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCC
Confidence            355567777899999999999764         45667888999999999999987544432  233333333   3689


Q ss_pred             EEEEEecCCCCCCCCHHHH-HhhcCcCcccCCce-EEEEeeeeeCC
Q psy6566          83 VLIYANKQDIKNSMSPVEI-SNLLDLTSIKKQQW-HIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~~~~~~~v-~~~~~~~~~~~~~~-~~~~~Sa~~~~  126 (126)
                      +++++||+|+.... ..+. .+.     . ..++ +++++||++|.
T Consensus       113 ~ilv~NK~D~~~~~-~~~~~~~~-----~-~lg~~~~~~iSA~~g~  151 (439)
T 1mky_A          113 TILVANKAENLREF-EREVKPEL-----Y-SLGFGEPIPVSAEHNI  151 (439)
T ss_dssp             EEEEEESCCSHHHH-HHHTHHHH-----G-GGSSCSCEECBTTTTB
T ss_pred             EEEEEeCCCCcccc-HHHHHHHH-----H-hcCCCCEEEEeccCCC
Confidence            99999999975310 0111 111     1 1222 47899999873

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.47  E-value=1.4e-14  Score=94.76  Aligned_cols=106  Identities=18%  Similarity=0.218  Sum_probs=73.1

Q ss_pred             cCCccC--ceEEEEEECCEEEEEEEcCCCcchHH------HHHhhc--cCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566           7 TSPTIG--SNVEEVIWKNIHFIMWDLGGQQSLRA------AWSTYY--TNTEFVILVIDSTDRERISLTKEELYKMLNHE   76 (126)
Q Consensus         7 ~~pTi~--~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~--~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~   76 (126)
                      ..|+++  .....+.+++..+.+|||||+..+..      .+..++  ..+|++++|+|+++.   +....++.++... 
T Consensus        32 ~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~---~~~~~~~~~~~~~-  107 (271)
T 3k53_A           32 NWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL---MRNLFLTLELFEM-  107 (271)
T ss_dssp             ECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH---HHHHHHHHHHHHT-
T ss_pred             CCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc---hhhHHHHHHHHhc-
Confidence            345555  44455666888999999999987765      566666  789999999998764   3445556666544 


Q ss_pred             CCCCCeEEEEEecCCCCC----CCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          77 DLSKAAVLIYANKQDIKN----SMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                        ...|+++++||+|+..    ......+.+.+        +++++++||++|.
T Consensus       108 --~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~~~~~Sa~~g~  151 (271)
T 3k53_A          108 --EVKNIILVLNKFDLLKKKGAKIDIKKMRKEL--------GVPVIPTNAKKGE  151 (271)
T ss_dssp             --TCCSEEEEEECHHHHHHHTCCCCHHHHHHHH--------SSCEEECBGGGTB
T ss_pred             --CCCCEEEEEEChhcCcccccHHHHHHHHHHc--------CCcEEEEEeCCCC
Confidence              3389999999999643    11222333322        4579999999873

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.46  E-value=7.8e-14  Score=96.11  Aligned_cols=99  Identities=19%  Similarity=0.183  Sum_probs=64.6

Q ss_pred             EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCC----H
Q psy6566          23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMS----P   98 (126)
Q Consensus        23 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----~   98 (126)
                      ..+.+|||||++.|.......+..+|++++|+|+++..........+..+...   ...|+++++||+|+.....    .
T Consensus        83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~  159 (410)
T 1kk1_A           83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENY  159 (410)
T ss_dssp             EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred             cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHHHHHHHH
Confidence            78999999999999888877888999999999998542122222222222111   2358999999999976321    1


Q ss_pred             HHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          99 VEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        99 ~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +++...+...  ....++++++||++|+
T Consensus       160 ~~i~~~l~~~--~~~~~~~i~vSA~~g~  185 (410)
T 1kk1_A          160 RQIKEFIEGT--VAENAPIIPISALHGA  185 (410)
T ss_dssp             HHHHHHHTTS--TTTTCCEEECBTTTTB
T ss_pred             HHHHHHHHhc--CcCCCeEEEeeCCCCC
Confidence            1222222211  1235789999999873

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.46  E-value=6.2e-15  Score=96.64  Aligned_cols=103  Identities=19%  Similarity=0.213  Sum_probs=68.7

Q ss_pred             CccCceEEEEEEC-CEEEEEEEcCCCcchH------HHHHhhcc--CCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCC
Q psy6566           9 PTIGSNVEEVIWK-NIHFIMWDLGGQQSLR------AAWSTYYT--NTEFVILVIDSTDRERISLTKEELYKMLNHEDLS   79 (126)
Q Consensus         9 pTi~~~~~~~~~~-~~~~~i~Dt~G~~~~~------~~~~~~~~--~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~   79 (126)
                      |.+.+......+. +..+.+|||||++.+.      ..+..++.  .+|++++|+|+++.++   ...|..++.+    .
T Consensus        34 pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~---~~~~~~~l~~----~  106 (272)
T 3b1v_A           34 PGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLER---NLYLTTQLIE----T  106 (272)
T ss_dssp             SCCCCSCEEEECTTCTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHH---HHHHHHHHHH----T
T ss_pred             CCCcEEEEEEEEecCCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHh---HHHHHHHHHh----c
Confidence            4333333344443 6789999999998875      45666665  6999999999987543   3445555543    4


Q ss_pred             CCeEEEEEecCCCCCC----CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          80 KAAVLIYANKQDIKNS----MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        80 ~~piilv~nK~D~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ++|+++++||+|+...    .....+...        .+++++++||++|+
T Consensus       107 ~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~--------lg~~vi~~SA~~g~  149 (272)
T 3b1v_A          107 GIPVTIALNMIDVLDGQGKKINVDKLSYH--------LGVPVVATSALKQT  149 (272)
T ss_dssp             CSCEEEEEECHHHHHHTTCCCCHHHHHHH--------HTSCEEECBTTTTB
T ss_pred             CCCEEEEEEChhhCCcCCcHHHHHHHHHH--------cCCCEEEEEccCCC
Confidence            6899999999997531    112223222        24579999999873

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.45  E-value=2.6e-13  Score=92.00  Aligned_cols=111  Identities=15%  Similarity=0.157  Sum_probs=75.5

Q ss_pred             CccCceEEEEEECCEEEEEEEcCCCcchH---------HHHHhhccCCcEEEEEEECCCcc--cHHHHHHHHHHHhCCCC
Q psy6566           9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLR---------AAWSTYYTNTEFVILVIDSTDRE--RISLTKEELYKMLNHED   77 (126)
Q Consensus         9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~~~~~~~~l~v~d~~~~~--~~~~~~~~~~~~~~~~~   77 (126)
                      +|.+.....+..++..+.+|||+|.....         .....+...++++++|+|+++..  +++....|+..+.... 
T Consensus       200 ~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-  278 (357)
T 2e87_A          200 TTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-  278 (357)
T ss_dssp             CSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-
T ss_pred             eeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-
Confidence            45556666666688999999999985431         12223456799999999988776  6777777777665532 


Q ss_pred             CCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          78 LSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                       .+.|+++++||+|+......++....     +...+++++++||++|+
T Consensus       279 -~~~piilV~NK~Dl~~~~~~~~~~~~-----~~~~~~~~~~iSA~~g~  321 (357)
T 2e87_A          279 -KDLPFLVVINKIDVADEENIKRLEKF-----VKEKGLNPIKISALKGT  321 (357)
T ss_dssp             -TTSCEEEEECCTTTCCHHHHHHHHHH-----HHHTTCCCEECBTTTTB
T ss_pred             -CCCCEEEEEECcccCChHHHHHHHHH-----HHhcCCCeEEEeCCCCc
Confidence             27899999999999763211111111     11235679999999874

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.44  E-value=2.9e-13  Score=94.51  Aligned_cols=100  Identities=15%  Similarity=0.141  Sum_probs=61.5

Q ss_pred             ceEEEEEECCEEEEEEEcCCCcchHHHHH--------hhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEE
Q psy6566          13 SNVEEVIWKNIHFIMWDLGGQQSLRAAWS--------TYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVL   84 (126)
Q Consensus        13 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~--------~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii   84 (126)
                      +....+.+++..+.+|||+|.+.+...++        .+++.+|++++|+|.+++.+... ..++..+      ...|++
T Consensus       262 ~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~pii  334 (462)
T 3geh_A          262 VVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLI  334 (462)
T ss_dssp             HHHHEEEETTEEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEE
T ss_pred             EEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEE
Confidence            55577888999999999999876654433        35788999999999998766554 3334433      236999


Q ss_pred             EEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          85 IYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        85 lv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +|+||+|+.....   +. .. ..+  ....+++++||++|+
T Consensus       335 vV~NK~Dl~~~~~---~~-~~-~~~--~~~~~~i~iSAktg~  369 (462)
T 3geh_A          335 LVMNKIDLVEKQL---IT-SL-EYP--ENITQIVHTAAAQKQ  369 (462)
T ss_dssp             EEEECTTSSCGGG---ST-TC-CCC--TTCCCEEEEBTTTTB
T ss_pred             EEEECCCCCcchh---hH-HH-HHh--ccCCcEEEEECCCCC
Confidence            9999999976321   11 11 111  134579999999873

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.43  E-value=2.5e-14  Score=100.50  Aligned_cols=108  Identities=18%  Similarity=0.158  Sum_probs=72.0

Q ss_pred             ccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCc---ccHHHHHHHHHHHhCCCCCCCCeEEEE
Q psy6566          10 TIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR---ERISLTKEELYKMLNHEDLSKAAVLIY   86 (126)
Q Consensus        10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~piilv   86 (126)
                      |+.+....+..++..+.+|||||++.|..++...+..+|++++|+|+++.   .+.+.    +.... .   .++|++++
T Consensus        38 T~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~----l~~~~-~---~~vPiIVv  109 (501)
T 1zo1_I           38 TQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEA----IQHAK-A---AQVPVVVA  109 (501)
T ss_dssp             CCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHH----HHHHH-H---TTCCEEEE
T ss_pred             eEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHH----HHHHH-h---cCceEEEE
Confidence            33344444455677899999999999999988889999999999998873   33332    32222 1   46899999


Q ss_pred             EecCCCCCCCCHHHHHhhcCcC--cccC--CceEEEEeeeeeCC
Q psy6566          87 ANKQDIKNSMSPVEISNLLDLT--SIKK--QQWHIQSCCALTGE  126 (126)
Q Consensus        87 ~nK~D~~~~~~~~~v~~~~~~~--~~~~--~~~~~~~~Sa~~~~  126 (126)
                      +||+|+.+... +.+...+...  ....  ..++++++||++|.
T Consensus       110 iNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~  152 (501)
T 1zo1_I          110 VNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVSAKAGT  152 (501)
T ss_dssp             EECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECCTTTCT
T ss_pred             EEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEeeeecc
Confidence            99999975311 1222221110  1111  23789999999874

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.43  E-value=1e-14  Score=103.18  Aligned_cols=111  Identities=18%  Similarity=0.113  Sum_probs=75.1

Q ss_pred             cCceEEEEEE-CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEec
Q psy6566          11 IGSNVEEVIW-KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANK   89 (126)
Q Consensus        11 i~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK   89 (126)
                      ..+....+.+ ++..+.+|||||++.|..++..+++.+|++++|+|+++...... ..++..+..    .++|+++++||
T Consensus        39 ~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt-~e~l~~~~~----~~vPiIVViNK  113 (537)
T 3izy_P           39 QHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQT-VESIQHAKD----AHVPIVLAINK  113 (537)
T ss_dssp             CCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHH-HHHHHHHHT----TTCCEEECCBS
T ss_pred             EEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHH-HHHHHHHHH----cCCcEEEEEec
Confidence            3344555555 56789999999999999999999999999999999988554433 334444432    46899999999


Q ss_pred             CCCCCCCC---HHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          90 QDIKNSMS---PVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        90 ~D~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +|+.+...   ..++.............++++++||++|+
T Consensus       114 iDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~  153 (537)
T 3izy_P          114 CDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGE  153 (537)
T ss_dssp             GGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSC
T ss_pred             ccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCC
Confidence            99875211   11222111101111235789999999884

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.41  E-value=2.2e-13  Score=94.59  Aligned_cols=109  Identities=15%  Similarity=0.099  Sum_probs=68.7

Q ss_pred             ceEEEEEECCEEEEEEEcCCCcchHHHH------------HhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCC
Q psy6566          13 SNVEEVIWKNIHFIMWDLGGQQSLRAAW------------STYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK   80 (126)
Q Consensus        13 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~------------~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~   80 (126)
                      .....+.+++..+.+|||+|+++.....            ..+++.++++++++|+++..+..+.  .+...+..   .+
T Consensus       218 ~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~---~~  292 (439)
T 1mky_A          218 PVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMER---RG  292 (439)
T ss_dssp             -CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH---TT
T ss_pred             ceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cC
Confidence            4456777888899999999986543321            3457789999999999876665543  23333333   46


Q ss_pred             CeEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          81 AAVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        81 ~piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .|+++++||+|+....  ...++...+...+......+++++||++|.
T Consensus       293 ~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~  340 (439)
T 1mky_A          293 RASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGW  340 (439)
T ss_dssp             CEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTB
T ss_pred             CCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCC
Confidence            8999999999986532  123333222222222334579999999874

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.41  E-value=3.9e-13  Score=101.55  Aligned_cols=104  Identities=20%  Similarity=0.181  Sum_probs=70.2

Q ss_pred             EEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEecCCCCCC
Q psy6566          17 EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLIYANKQDIKNS   95 (126)
Q Consensus        17 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~   95 (126)
                      .+..++..+.+|||||++.|......+++.+|++++|+|+++... .+...++..+..    .++| +++++||+|+.+.
T Consensus       353 ~f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~-~QTrEhL~ll~~----lgIP~IIVVINKiDLv~d  427 (1289)
T 3avx_A          353 EYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLGRQ----VGVPYIIVFLNKCDMVDD  427 (1289)
T ss_dssp             EEECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSC-TTHHHHHHHHHH----HTCSCEEEEEECCTTCCC
T ss_pred             EEcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCc-HHHHHHHHHHHH----cCCCeEEEEEeecccccc
Confidence            344477899999999999999988889999999999999987532 233444433322    3577 7899999999752


Q ss_pred             CC-HH----HHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          96 MS-PV----EISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        96 ~~-~~----~v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      .. .+    ++...+.........++++++||++|
T Consensus       428 ~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG  462 (1289)
T 3avx_A          428 EELLELVEMEVRELLSQYDFPGDDTPIVRGSALKA  462 (1289)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTT
T ss_pred             hhhHHHHHHHHHHHHHhccccccceeEEEEEeccC
Confidence            11 11    11111111111123568999999987

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.40  E-value=3.4e-13  Score=96.61  Aligned_cols=63  Identities=14%  Similarity=0.194  Sum_probs=51.5

Q ss_pred             EEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCC---cccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566          24 HFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD---RERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        24 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~   94 (126)
                      .+.+|||||++.|..++..+++.+|++++|+|+++   +.+++.+.    .+. .   .++|+++++||+|+..
T Consensus        71 ~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~-~---~~vPiIVViNKiDl~~  136 (594)
T 1g7s_A           71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILR-M---YRTPFVVAANKIDRIH  136 (594)
T ss_dssp             EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHH-H---TTCCEEEEEECGGGST
T ss_pred             CEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHH-H---cCCeEEEEeccccccc
Confidence            69999999999999998888999999999999998   45554333    222 2   4689999999999864

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.37  E-value=2.3e-12  Score=87.56  Aligned_cols=116  Identities=21%  Similarity=0.182  Sum_probs=72.0

Q ss_pred             cCCccCceEEEEEECCEEEEEEEcCCC---------cchHHHHHhhccCCcEEEEEEECCCcc--cHHHHHHHHHHHhCC
Q psy6566           7 TSPTIGSNVEEVIWKNIHFIMWDLGGQ---------QSLRAAWSTYYTNTEFVILVIDSTDRE--RISLTKEELYKMLNH   75 (126)
Q Consensus         7 ~~pTi~~~~~~~~~~~~~~~i~Dt~G~---------~~~~~~~~~~~~~~~~~l~v~d~~~~~--~~~~~~~~~~~~~~~   75 (126)
                      +.+|.+.....+.+.+..+.+|||+|.         +.|...+. .+..+|++++|+|++++.  ..+.... +...++.
T Consensus       210 ~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~~~~~~~~~~~~-~~~~L~~  287 (364)
T 2qtf_A          210 LFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTFSENLLIETLQS-SFEILRE  287 (364)
T ss_dssp             ----CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTSCHHHHHHHHHH-HHHHHHH
T ss_pred             cccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCcchHHHHHHH-HHHHHHH
Confidence            456777888889998899999999996         33444444 478899999999998875  3433322 3333332


Q ss_pred             CCCCCCeEEEEEecCCCCCCCCHHH---HHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          76 EDLSKAAVLIYANKQDIKNSMSPVE---ISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        76 ~~~~~~piilv~nK~D~~~~~~~~~---v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ....+.|+++|+||+|+.... ...   ....+.... .....+++++||++|+
T Consensus       288 l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l-~~~~~~~~~~SA~~g~  339 (364)
T 2qtf_A          288 IGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKEL-YSPIFDVIPISALKRT  339 (364)
T ss_dssp             HTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHH-CSCEEEEEECBTTTTB
T ss_pred             hCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHh-cCCCCcEEEEECCCCc
Confidence            223578999999999987532 111   110000000 0123468999999873

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.37  E-value=4.1e-12  Score=90.06  Aligned_cols=82  Identities=16%  Similarity=0.189  Sum_probs=61.9

Q ss_pred             ccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEec
Q psy6566          10 TIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANK   89 (126)
Q Consensus        10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK   89 (126)
                      |+......+..++..+.+|||||++.|......+++.+|++++|+|+++.... ....++..+ ..   .++|+++++||
T Consensus        69 Ti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-~t~~~~~~~-~~---~~ipiivviNK  143 (529)
T 2h5e_A           69 SITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVED-RTRKLMEVT-RL---RDTPILTFMNK  143 (529)
T ss_dssp             -CCTTEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-HHHHHHHHH-TT---TTCCEEEEEEC
T ss_pred             ceeeeEEEEEECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchH-HHHHHHHHH-HH---cCCCEEEEEcC
Confidence            33344456667899999999999999998888899999999999999875432 233334333 22   46899999999


Q ss_pred             CCCCCCC
Q psy6566          90 QDIKNSM   96 (126)
Q Consensus        90 ~D~~~~~   96 (126)
                      +|+....
T Consensus       144 ~Dl~~~~  150 (529)
T 2h5e_A          144 LDRDIRD  150 (529)
T ss_dssp             TTSCCSC
T ss_pred             cCCcccc
Confidence            9997643

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.35  E-value=7.4e-13  Score=92.38  Aligned_cols=94  Identities=19%  Similarity=0.265  Sum_probs=62.5

Q ss_pred             CCEEEEEEEcCC--------CcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCC
Q psy6566          21 KNIHFIMWDLGG--------QQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDI   92 (126)
Q Consensus        21 ~~~~~~i~Dt~G--------~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~   92 (126)
                      .+..+.+|||||        ++.+...+..+++.+|++++|+|..+.  +.....++...++.   .+.|+++++||+|+
T Consensus        69 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~--~~~~d~~l~~~l~~---~~~pvilV~NK~D~  143 (456)
T 4dcu_A           69 LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREG--VTAADEEVAKILYR---TKKPVVLAVNKLDN  143 (456)
T ss_dssp             CSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSC--SCHHHHHHHHHHTT---CCSCEEEEEECC--
T ss_pred             CCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCC--CChHHHHHHHHHHH---cCCCEEEEEECccc
Confidence            678999999999        777888889999999999999997653  33344556666665   57899999999998


Q ss_pred             CCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          93 KNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        93 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ....  ....+..    . ...-..+.+||++|.
T Consensus       144 ~~~~--~~~~e~~----~-lg~~~~~~iSA~~g~  170 (456)
T 4dcu_A          144 TEMR--ANIYDFY----S-LGFGEPYPISGTHGL  170 (456)
T ss_dssp             ---------CCSG----G-GSSSSEEECCTTTCT
T ss_pred             hhhh--hhHHHHH----H-cCCCceEEeeccccc
Confidence            6421  1111111    1 111135689998873

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.34  E-value=1.2e-11  Score=90.04  Aligned_cols=85  Identities=19%  Similarity=0.200  Sum_probs=65.4

Q ss_pred             ccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEE
Q psy6566           6 HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLI   85 (126)
Q Consensus         6 ~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piil   85 (126)
                      .+.+|++.....+..++..+.+|||||+..|...+..+++.+|++++|+|+++..+...... |..+..    .++|+++
T Consensus        60 ~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~-~~~~~~----~~~p~iv  134 (691)
T 1dar_A           60 ERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETV-WRQAEK----YKVPRIA  134 (691)
T ss_dssp             -------CCEEEEEETTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH-HHHHHH----TTCCEEE
T ss_pred             hcccccccceEEEEECCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHH-HHHHHH----cCCCEEE
Confidence            34678887777888899999999999999999999999999999999999998776665543 444432    3689999


Q ss_pred             EEecCCCCCC
Q psy6566          86 YANKQDIKNS   95 (126)
Q Consensus        86 v~nK~D~~~~   95 (126)
                      ++||+|+...
T Consensus       135 viNKiD~~~~  144 (691)
T 1dar_A          135 FANKMDKTGA  144 (691)
T ss_dssp             EEECTTSTTC
T ss_pred             EEECCCcccC
Confidence            9999999764

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.33  E-value=1.1e-13  Score=93.98  Aligned_cols=110  Identities=14%  Similarity=0.141  Sum_probs=55.3

Q ss_pred             CCccCceEEEEEE--CC--EEEEEEEcCCC-------cchHHHHH-------hhccCC-------------cEEEEEEEC
Q psy6566           8 SPTIGSNVEEVIW--KN--IHFIMWDLGGQ-------QSLRAAWS-------TYYTNT-------------EFVILVIDS   56 (126)
Q Consensus         8 ~pTi~~~~~~~~~--~~--~~~~i~Dt~G~-------~~~~~~~~-------~~~~~~-------------~~~l~v~d~   56 (126)
                      .||+++....+.+  .+  ..+.+|||+|.       +.+..++.       .|++.+             ++++|+++.
T Consensus        76 ~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~  155 (361)
T 2qag_A           76 ERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISP  155 (361)
T ss_dssp             --CEEEEEEEEC----CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECS
T ss_pred             CCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEec
Confidence            3677766555444  33  47999999999       66666554       555433             456666654


Q ss_pred             CCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHh--hcCcCcccCCceEEEEeeeeeC
Q psy6566          57 TDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISN--LLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~--~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      + ..++......+...+.    .++|+++|+||+|+...   .++..  ......+...+++++++||++|
T Consensus       156 ~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~~~---~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~  218 (361)
T 2qag_A          156 F-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTLTL---KERERLKKRILDEIEEHNIKIYHLPDAES  218 (361)
T ss_dssp             S-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSSCH---HHHHHHHHHHHHHTTCC-CCSCCCC----
T ss_pred             C-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCCCH---HHHHHHHHHHHHHHHHCCCCEEeCCCcCC
Confidence            2 3345444433333332    57899999999998753   33322  1122334455788999999876

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.33  E-value=3.8e-12  Score=84.54  Aligned_cols=101  Identities=23%  Similarity=0.206  Sum_probs=63.5

Q ss_pred             EEEECCEEEEEEEcCCCc-chHH--------HHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEE
Q psy6566          17 EVIWKNIHFIMWDLGGQQ-SLRA--------AWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYA   87 (126)
Q Consensus        17 ~~~~~~~~~~i~Dt~G~~-~~~~--------~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~   87 (126)
                      .+..++..+.+|||||.. ....        ....+++.+|++++|+|+++   +.....++...+..   .+.|+++++
T Consensus        50 i~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvl  123 (301)
T 1ega_A           50 IHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAV  123 (301)
T ss_dssp             EEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEE
T ss_pred             EEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEE
Confidence            344478899999999997 3221        22455788999999999876   22333344444443   468999999


Q ss_pred             ecCCCCCCCCHHHHHhhcCcCcccCCce-EEEEeeeeeCC
Q psy6566          88 NKQDIKNSMSPVEISNLLDLTSIKKQQW-HIQSCCALTGE  126 (126)
Q Consensus        88 nK~D~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~  126 (126)
                      ||+|+...  ...+..... .+.+..++ .++.+||++|.
T Consensus       124 NK~D~~~~--~~~~~~~l~-~l~~~~~~~~~i~iSA~~g~  160 (301)
T 1ega_A          124 NKVDNVQE--KADLLPHLQ-FLASQMNFLDIVPISAETGL  160 (301)
T ss_dssp             ESTTTCCC--HHHHHHHHH-HHHTTSCCSEEEECCTTTTT
T ss_pred             ECcccCcc--HHHHHHHHH-HHHHhcCcCceEEEECCCCC
Confidence            99998762  122211111 11112233 68999998763

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.32  E-value=3.2e-14  Score=101.96  Aligned_cols=114  Identities=18%  Similarity=0.265  Sum_probs=53.9

Q ss_pred             CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcc---c---HHHHHHHHHHHhCCCCCCCCe
Q psy6566           9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE---R---ISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~---~---~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      .|+......+..++..+.||||||++.|......+++.+|++|+|+|+++..   .   ......++..+..    .++|
T Consensus       241 iTid~~~~~~~~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----lgip  316 (592)
T 3mca_A          241 VTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----LGIS  316 (592)
T ss_dssp             ------------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----SSCC
T ss_pred             eeEEeeEEEEEeCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH----cCCC
Confidence            3555555666667889999999999999888888889999999999987531   0   1112222222221    2455


Q ss_pred             -EEEEEecCCCCCCC--CHHH----HHhhc-CcCcccCCceEEEEeeeeeCC
Q psy6566          83 -VLIYANKQDIKNSM--SPVE----ISNLL-DLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        83 -iilv~nK~D~~~~~--~~~~----v~~~~-~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                       +++++||+|+.+..  ....    +...+ ...-.....++++++||++|.
T Consensus       317 ~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~  368 (592)
T 3mca_A          317 EIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGT  368 (592)
T ss_dssp             CEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCS
T ss_pred             eEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCc
Confidence             99999999987521  1111    22222 111112235689999999884

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.30  E-value=2.3e-12  Score=84.43  Aligned_cols=112  Identities=12%  Similarity=0.156  Sum_probs=60.2

Q ss_pred             CCccCceEEEEEE--CC--EEEEEEEcCCC-------cchHHHH-------Hhhcc-------------CCcEEEEEEEC
Q psy6566           8 SPTIGSNVEEVIW--KN--IHFIMWDLGGQ-------QSLRAAW-------STYYT-------------NTEFVILVIDS   56 (126)
Q Consensus         8 ~pTi~~~~~~~~~--~~--~~~~i~Dt~G~-------~~~~~~~-------~~~~~-------------~~~~~l~v~d~   56 (126)
                      .||+++......+  ++  ..+.+|||||.       +.+..+.       ..|++             .+|+++++++.
T Consensus        46 ~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~  125 (274)
T 3t5d_A           46 KKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAP  125 (274)
T ss_dssp             ---CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECS
T ss_pred             CCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecC
Confidence            7888877777666  33  59999999997       3344444       33433             37899999977


Q ss_pred             CCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          57 TDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      +..........++..+ ..    ++|+++|+||+|+.............. ......+++++.+||+++
T Consensus       126 ~~~~~~~~d~~~l~~l-~~----~~pvi~V~nK~D~~~~~e~~~~~~~i~-~~l~~~~i~v~~~sa~~~  188 (274)
T 3t5d_A          126 SGHGLKPLDIEFMKRL-HE----KVNIIPLIAKADTLTPEECQQFKKQIM-KEIQEHKIKIYEFPETDD  188 (274)
T ss_dssp             CCSSCCHHHHHHHHHH-TT----TSCEEEEESSGGGSCHHHHHHHHHHHH-HHHHHTTCCCCCC-----
T ss_pred             CCCCCCHHHHHHHHHH-hc----cCCEEEEEeccCCCCHHHHHHHHHHHH-HHHHHcCCeEEcCCCCCC
Confidence            6533222223334433 32    689999999999865311111111111 111234556777888765

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.30  E-value=9.2e-12  Score=82.15  Aligned_cols=100  Identities=11%  Similarity=0.095  Sum_probs=63.5

Q ss_pred             CEEEEEEEcCCCc-------------chHHHHHhhccCCcEEE-EEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEE
Q psy6566          22 NIHFIMWDLGGQQ-------------SLRAAWSTYYTNTEFVI-LVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYA   87 (126)
Q Consensus        22 ~~~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~~l-~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~   87 (126)
                      ...+.+|||||..             .+..+...|++.++.++ +|+|+++..+..+...++..+ ..   .+.|+++|+
T Consensus       124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~-~~---~~~~~i~V~  199 (299)
T 2aka_B          124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV-DP---QGQRTIGVI  199 (299)
T ss_dssp             CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHH-CT---TCSSEEEEE
T ss_pred             CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHh-CC---CCCeEEEEE
Confidence            4789999999953             45667788898888776 789988754443333333333 32   468999999


Q ss_pred             ecCCCCCCCC-HHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          88 NKQDIKNSMS-PVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        88 nK~D~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ||+|+..... ..+..... .........+++++||++|+
T Consensus       200 NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~v~~~SA~~~~  238 (299)
T 2aka_B          200 TKLDLMDEGTDARDVLENK-LLPLRRGYIGVVNRSQKDID  238 (299)
T ss_dssp             ECGGGSCTTCCCHHHHTTC-SSCCTTCEEECCCCCCBCTT
T ss_pred             EccccCCCCchHHHHHhCC-cCcCCCCcEEEECCChhhcc
Confidence            9999875322 12221110 00111122478999999874

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.29  E-value=1.9e-11  Score=89.15  Aligned_cols=84  Identities=13%  Similarity=0.139  Sum_probs=65.1

Q ss_pred             cCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEE
Q psy6566           7 TSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIY   86 (126)
Q Consensus         7 ~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv   86 (126)
                      ..+|+......+.+++..+.+|||||+..|...+..+++.+|++++|+|+++..+..... .|..+..    .++|++++
T Consensus        59 ~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~-~~~~~~~----~~~p~ilv  133 (693)
T 2xex_A           59 RGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTET-VWRQATT----YGVPRIVF  133 (693)
T ss_dssp             -----CCSEEEEEETTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHH-HHHHHHH----TTCCEEEE
T ss_pred             cCceEeeeeEEEEECCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHH-HHHHHHH----cCCCEEEE
Confidence            346777667777889999999999999999999999999999999999999876665543 3444433    36899999


Q ss_pred             EecCCCCCC
Q psy6566          87 ANKQDIKNS   95 (126)
Q Consensus        87 ~nK~D~~~~   95 (126)
                      +||+|+...
T Consensus       134 iNK~Dl~~~  142 (693)
T 2xex_A          134 VNKMDKLGA  142 (693)
T ss_dssp             EECTTSTTC
T ss_pred             EECCCcccc
Confidence            999999764

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.26  E-value=1.2e-12  Score=86.98  Aligned_cols=89  Identities=20%  Similarity=0.143  Sum_probs=62.7

Q ss_pred             CCcchHHHHHhhccCCcEEEEEEECCCcc-cHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcc
Q psy6566          32 GQQSLRAAWSTYYTNTEFVILVIDSTDRE-RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSI  110 (126)
Q Consensus        32 G~~~~~~~~~~~~~~~~~~l~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~  110 (126)
                      .++++..+.+.+++++|++++|+|+++++ ++..+..|+..+- .   .++|+++|+||+|+.+........+.  ....
T Consensus        65 i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~-~---~~~~~ilV~NK~DL~~~~~v~~~~~~--~~~~  138 (302)
T 2yv5_A           65 VEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYE-Y---FKVEPVIVFNKIDLLNEEEKKELERW--ISIY  138 (302)
T ss_dssp             ECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHH-H---TTCEEEEEECCGGGCCHHHHHHHHHH--HHHH
T ss_pred             eCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHH-h---CCCCEEEEEEcccCCCccccHHHHHH--HHHH
Confidence            37778777788999999999999999886 8887777776543 2   57899999999999753100001111  1111


Q ss_pred             cCCceEEEEeeeeeCC
Q psy6566         111 KKQQWHIQSCCALTGE  126 (126)
Q Consensus       111 ~~~~~~~~~~Sa~~~~  126 (126)
                      +..+++++++||++|+
T Consensus       139 ~~~g~~~~~~SA~~g~  154 (302)
T 2yv5_A          139 RDAGYDVLKVSAKTGE  154 (302)
T ss_dssp             HHTTCEEEECCTTTCT
T ss_pred             HHCCCeEEEEECCCCC
Confidence            2235689999999874

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.23  E-value=1.2e-10  Score=85.04  Aligned_cols=83  Identities=13%  Similarity=0.110  Sum_probs=64.2

Q ss_pred             CCccCceEEEEEECC-------EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCC
Q psy6566           8 SPTIGSNVEEVIWKN-------IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK   80 (126)
Q Consensus         8 ~pTi~~~~~~~~~~~-------~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~   80 (126)
                      .+|+......+.+++       ..+.+|||||+..|...+..+++.+|++++|+|+++....... ..|.....    .+
T Consensus        60 giTi~~~~~~~~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~~~~~~----~~  134 (704)
T 2rdo_7           60 GITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVWRQANK----YK  134 (704)
T ss_pred             CceeeeceEEEEECCccccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHHHHHHH----cC
Confidence            346665556666666       8999999999999999999999999999999999876544333 34444432    46


Q ss_pred             CeEEEEEecCCCCCC
Q psy6566          81 AAVLIYANKQDIKNS   95 (126)
Q Consensus        81 ~piilv~nK~D~~~~   95 (126)
                      +|+++++||+|+...
T Consensus       135 ip~ilviNKiD~~~~  149 (704)
T 2rdo_7          135 VPRIAFVNKMDRMGA  149 (704)
T ss_pred             CCEEEEEeCCCcccc
Confidence            899999999998764

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.22  E-value=3.1e-11  Score=89.58  Aligned_cols=80  Identities=16%  Similarity=0.165  Sum_probs=64.4

Q ss_pred             CccCceEEEEEEC----------------CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHH
Q psy6566           9 PTIGSNVEEVIWK----------------NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKM   72 (126)
Q Consensus         9 pTi~~~~~~~~~~----------------~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~   72 (126)
                      .|++.....+.++                +..+.+|||||+..|...+..+++.+|++++|+|+++..++..... |...
T Consensus        68 iTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~-~~~~  146 (842)
T 1n0u_A           68 ITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETV-LRQA  146 (842)
T ss_dssp             CCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHH-HHHH
T ss_pred             eeEeeceeEEEecccccccccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHHH
Confidence            4676555555553                6899999999999999999999999999999999998877766543 4444


Q ss_pred             hCCCCCCCCeEEEEEecCCCC
Q psy6566          73 LNHEDLSKAAVLIYANKQDIK   93 (126)
Q Consensus        73 ~~~~~~~~~piilv~nK~D~~   93 (126)
                      ..    .++|+++++||+|+.
T Consensus       147 ~~----~~~p~ilviNK~D~~  163 (842)
T 1n0u_A          147 LG----ERIKPVVVINKVDRA  163 (842)
T ss_dssp             HH----TTCEEEEEEECHHHH
T ss_pred             HH----cCCCeEEEEECCCcc
Confidence            32    368999999999986

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.22  E-value=9.2e-11  Score=76.11  Aligned_cols=84  Identities=11%  Similarity=0.185  Sum_probs=53.2

Q ss_pred             ccCceEEEEEECCEEEEEEEcCCCcch-----------HHHHHhhccCCcEEEEEEECCCcccH-HHHHHHHHHHhCCCC
Q psy6566          10 TIGSNVEEVIWKNIHFIMWDLGGQQSL-----------RAAWSTYYTNTEFVILVIDSTDRERI-SLTKEELYKMLNHED   77 (126)
Q Consensus        10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~~~~~~~~~~~~~l~v~d~~~~~~~-~~~~~~~~~~~~~~~   77 (126)
                      |.......+..++..+.+|||||+..+           ......+++.+|++++|+|+++.... ..+..++....... 
T Consensus        58 t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-  136 (260)
T 2xtp_A           58 TKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-  136 (260)
T ss_dssp             CCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-
T ss_pred             eeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-
Confidence            444566677779999999999997654           22233468899999999999863222 22333344433211 


Q ss_pred             CCCCeEEEEEe-cCCCCCC
Q psy6566          78 LSKAAVLIYAN-KQDIKNS   95 (126)
Q Consensus        78 ~~~~piilv~n-K~D~~~~   95 (126)
                       ...|.++++| |+|+...
T Consensus       137 -~~~~~i~vv~nK~Dl~~~  154 (260)
T 2xtp_A          137 -AMGHTIVLFTHKEDLNGG  154 (260)
T ss_dssp             -GGGGEEEEEECGGGGTTC
T ss_pred             -hhccEEEEEEcccccCCc
Confidence             1345555555 9999753

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.21  E-value=3.9e-11  Score=78.12  Aligned_cols=83  Identities=6%  Similarity=-0.040  Sum_probs=54.1

Q ss_pred             ccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhc---------cCCcEEEEEEECCCcccHHHH-HHHHHHHhCCCC-C
Q psy6566          10 TIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYY---------TNTEFVILVIDSTDRERISLT-KEELYKMLNHED-L   78 (126)
Q Consensus        10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~---------~~~~~~l~v~d~~~~~~~~~~-~~~~~~~~~~~~-~   78 (126)
                      |.......+..++..+.+|||||++.+....+.++         ..++++++|++++... +... ..++..+.+... .
T Consensus        71 t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~  149 (262)
T 3def_A           71 GLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKE  149 (262)
T ss_dssp             CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGG
T ss_pred             ceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchh
Confidence            44466667777999999999999987654332222         2789999999887644 3222 233333322211 0


Q ss_pred             CCCeEEEEEecCCCC
Q psy6566          79 SKAAVLIYANKQDIK   93 (126)
Q Consensus        79 ~~~piilv~nK~D~~   93 (126)
                      ...|+++++||+|+.
T Consensus       150 ~~~~~ivv~nK~Dl~  164 (262)
T 3def_A          150 IWCKTLLVLTHAQFS  164 (262)
T ss_dssp             GGGGEEEEEECTTCC
T ss_pred             hhcCEEEEEeCcccC
Confidence            124999999999985

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.18  E-value=2.9e-10  Score=82.60  Aligned_cols=79  Identities=9%  Similarity=0.148  Sum_probs=60.9

Q ss_pred             ccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEec
Q psy6566          10 TIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANK   89 (126)
Q Consensus        10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK   89 (126)
                      |+......+..++..+.+|||+|++.|...+..+++.+|++++|+|+++..... ...++..+..    .++|+++++||
T Consensus        61 ti~~~~~~~~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~----~~ip~ilv~NK  135 (665)
T 2dy1_A           61 TVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER----LGLPRMVVVTK  135 (665)
T ss_dssp             CCSCEEEEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEEC
T ss_pred             eEEecceEEeeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH----ccCCEEEEecC
Confidence            344444455558899999999999999999999999999999999987653332 3344544433    36899999999


Q ss_pred             CCCC
Q psy6566          90 QDIK   93 (126)
Q Consensus        90 ~D~~   93 (126)
                      +|+.
T Consensus       136 iD~~  139 (665)
T 2dy1_A          136 LDKG  139 (665)
T ss_dssp             GGGC
T ss_pred             Cchh
Confidence            9987

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.14  E-value=2.7e-11  Score=82.14  Aligned_cols=97  Identities=14%  Similarity=0.165  Sum_probs=63.0

Q ss_pred             CCEEEEEEEcCCCcch-------------HHHHHhhccCCcEEEEEEECCCcccHH-HHHHHHHHHhCCCCCCCCeEEEE
Q psy6566          21 KNIHFIMWDLGGQQSL-------------RAAWSTYYTNTEFVILVIDSTDRERIS-LTKEELYKMLNHEDLSKAAVLIY   86 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~l~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~piilv   86 (126)
                      ....+.+|||||...+             ..+...|++.++++++++|..+.+... ....+...+ .   ..+.|+++|
T Consensus       134 ~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~-~---~~~~~~i~V  209 (360)
T 3t34_A          134 NVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREV-D---PSGDRTFGV  209 (360)
T ss_dssp             TSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHS-C---TTCTTEEEE
T ss_pred             CCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHh-c---ccCCCEEEE
Confidence            4568999999998776             667888999999999999876543332 222222222 2   246799999


Q ss_pred             EecCCCCCCCC-HHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          87 ANKQDIKNSMS-PVEISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        87 ~nK~D~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      +||+|+..... ..+...    ......+++|+.+|++++
T Consensus       210 ~nK~Dl~~~~~~~~~~~~----~~~~~~~~~~~~v~~~s~  245 (360)
T 3t34_A          210 LTKIDLMDKGTDAVEILE----GRSFKLKYPWVGVVNRSQ  245 (360)
T ss_dssp             EECGGGCCTTCCSHHHHT----TSSSCCSSCCEEECCCCH
T ss_pred             EeCCccCCCcccHHHHHc----CccccccCCeEEEEECCh
Confidence            99999875321 112111    122344567888888753

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.12  E-value=3.2e-10  Score=72.70  Aligned_cols=84  Identities=12%  Similarity=0.143  Sum_probs=54.8

Q ss_pred             ccCceEEEEEECCEEEEEEEcCCC-----------cchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC-
Q psy6566          10 TIGSNVEEVIWKNIHFIMWDLGGQ-----------QSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED-   77 (126)
Q Consensus        10 Ti~~~~~~~~~~~~~~~i~Dt~G~-----------~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~-   77 (126)
                      |..+....+.+++..+.+|||||.           +.+...+..++++++++++|+|+++....  ...++..+.+... 
T Consensus        65 t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~  142 (239)
T 3lxx_A           65 TKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGE  142 (239)
T ss_dssp             CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHH
T ss_pred             eeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhh
Confidence            444556677779999999999994           34555556667889999999998764331  1222322221100 


Q ss_pred             CCCCeEEEEEecCCCCCC
Q psy6566          78 LSKAAVLIYANKQDIKNS   95 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~   95 (126)
                      ....|+++++||+|+...
T Consensus       143 ~~~~~~iiv~nK~D~~~~  160 (239)
T 3lxx_A          143 RARSFMILIFTRKDDLGD  160 (239)
T ss_dssp             HHGGGEEEEEECGGGC--
T ss_pred             hccceEEEEEeCCccCCc
Confidence            024599999999998653

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.12  E-value=2.7e-10  Score=75.74  Aligned_cols=71  Identities=15%  Similarity=0.235  Sum_probs=49.2

Q ss_pred             CCEEEEEEEcCCCcc-------------hHHHHHhhccCCcEEEEEEECCCcccH-HHHHHHHHHHhCCCCCCCCeEEEE
Q psy6566          21 KNIHFIMWDLGGQQS-------------LRAAWSTYYTNTEFVILVIDSTDRERI-SLTKEELYKMLNHEDLSKAAVLIY   86 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~l~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~piilv   86 (126)
                      .+..+.+|||||...             +...+..+++.+|++++|+|.++.... ..... +...+..   .+.|+++|
T Consensus       129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~-i~~~~~~---~~~~~i~v  204 (315)
T 1jwy_B          129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQ-LAKEVDP---EGKRTIGV  204 (315)
T ss_dssp             TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHH-HHHHHCS---SCSSEEEE
T ss_pred             CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHH-HHHHhCC---CCCcEEEE
Confidence            557899999999754             556677889999999999997443211 11112 2223333   46899999


Q ss_pred             EecCCCCCC
Q psy6566          87 ANKQDIKNS   95 (126)
Q Consensus        87 ~nK~D~~~~   95 (126)
                      +||+|+...
T Consensus       205 ~NK~Dl~~~  213 (315)
T 1jwy_B          205 ITKLDLMDK  213 (315)
T ss_dssp             EECTTSSCS
T ss_pred             EcCcccCCc
Confidence            999998754

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.03  E-value=2.3e-09  Score=76.44  Aligned_cols=81  Identities=16%  Similarity=0.204  Sum_probs=64.9

Q ss_pred             ccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEec
Q psy6566          10 TIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANK   89 (126)
Q Consensus        10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK   89 (126)
                      ||....-++.+++..+.++||||+..|.......++-+|++|+|+|+.+--.. .....|..+.+    .++|.++++||
T Consensus        87 TI~s~~~~~~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~-qT~~v~~~a~~----~~lp~i~fINK  161 (548)
T 3vqt_A           87 SVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEA-QTRKLMDVCRM----RATPVMTFVNK  161 (548)
T ss_dssp             -CTTTEEEEEETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCH-HHHHHHHHHHH----TTCCEEEEEEC
T ss_pred             cEeeceEEEEECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCccc-ccHHHHHHHHH----hCCceEEEEec
Confidence            55555667778999999999999999999999999999999999999874332 33445666654    36899999999


Q ss_pred             CCCCCC
Q psy6566          90 QDIKNS   95 (126)
Q Consensus        90 ~D~~~~   95 (126)
                      +|....
T Consensus       162 ~Dr~~a  167 (548)
T 3vqt_A          162 MDREAL  167 (548)
T ss_dssp             TTSCCC
T ss_pred             ccchhc
Confidence            999774

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=98.97  E-value=2.9e-09  Score=69.54  Aligned_cols=79  Identities=6%  Similarity=-0.044  Sum_probs=50.2

Q ss_pred             EEEEEECCEEEEEEEcCCCcchHH-------HHHhh--ccCCcEEEEEEECCCcccHHHH-HHHHHHHhCCCC-CCCCeE
Q psy6566          15 VEEVIWKNIHFIMWDLGGQQSLRA-------AWSTY--YTNTEFVILVIDSTDRERISLT-KEELYKMLNHED-LSKAAV   83 (126)
Q Consensus        15 ~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~--~~~~~~~l~v~d~~~~~~~~~~-~~~~~~~~~~~~-~~~~pi   83 (126)
                      ...+..++..+.+|||||++.+..       .+..+  .+.+|++++|+|++.. ++... ..++..+.+... ....|+
T Consensus        79 ~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~i  157 (270)
T 1h65_A           79 MVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKA  157 (270)
T ss_dssp             EEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGE
T ss_pred             EEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCE
Confidence            344555889999999999976542       12222  3479999999998653 23322 234444332211 012699


Q ss_pred             EEEEecCCCCC
Q psy6566          84 LIYANKQDIKN   94 (126)
Q Consensus        84 ilv~nK~D~~~   94 (126)
                      ++++||+|+..
T Consensus       158 ivV~nK~Dl~~  168 (270)
T 1h65_A          158 IVALTHAQFSP  168 (270)
T ss_dssp             EEEEECCSCCC
T ss_pred             EEEEECcccCC
Confidence            99999999864

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=98.94  E-value=7.8e-10  Score=80.74  Aligned_cols=68  Identities=13%  Similarity=0.124  Sum_probs=51.3

Q ss_pred             EEEEEEEcCCCcc---hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566          23 IHFIMWDLGGQQS---LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        23 ~~~~i~Dt~G~~~---~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~   94 (126)
                      ..+.+|||||...   .......+++.+|++++|+|++++.+..+... +...+..   .+.|+++|+||+|+..
T Consensus       174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~-l~~~l~~---~~~~iiiVlNK~Dl~~  244 (695)
T 2j69_A          174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRY-LENYIKG---RGLTVFFLVNAWDQVR  244 (695)
T ss_dssp             TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHH-HHHHTTT---SCCCEEEEEECGGGGG
T ss_pred             CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHH-HHHHHHh---hCCCEEEEEECccccc
Confidence            3599999999655   34566678899999999999988777666544 3333333   3678999999999864

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.90  E-value=3.6e-09  Score=66.23  Aligned_cols=114  Identities=16%  Similarity=0.125  Sum_probs=58.8

Q ss_pred             ccCCccCce--EEEEEECCEEEEEEEcCCCcc----------hHHHHHhhc---cCCcEEEEEEECCCcccHHHHHHHHH
Q psy6566           6 HTSPTIGSN--VEEVIWKNIHFIMWDLGGQQS----------LRAAWSTYY---TNTEFVILVIDSTDRERISLTKEELY   70 (126)
Q Consensus         6 ~~~pTi~~~--~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~---~~~~~~l~v~d~~~~~~~~~~~~~~~   70 (126)
                      .+.||.|..  ...+.+++ .+.+|||+|...          ++.....++   +.++++++++|++...+.... . +.
T Consensus        54 ~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~-~~  130 (210)
T 1pui_A           54 RTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQ-Q-MI  130 (210)
T ss_dssp             ---------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH-H-HH
T ss_pred             cccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHH-H-HH
Confidence            346777733  23344434 688999999842          333333444   578999999999876554321 1 11


Q ss_pred             HHhCCCCCCCCeEEEEEecCCCCCCCCHHH-HHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          71 KMLNHEDLSKAAVLIYANKQDIKNSMSPVE-ISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        71 ~~~~~~~~~~~piilv~nK~D~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      ..+..   .+.|+++++||+|+........ +.............+.++++||+++
T Consensus       131 ~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~  183 (210)
T 1pui_A          131 EWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKK  183 (210)
T ss_dssp             HHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTT
T ss_pred             HHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCC
Confidence            22222   4689999999999765211001 1111000000123467899999876

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=98.88  E-value=1.7e-09  Score=77.15  Aligned_cols=68  Identities=18%  Similarity=0.232  Sum_probs=53.0

Q ss_pred             EEEEEEcCCCcc-----------hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCC
Q psy6566          24 HFIMWDLGGQQS-----------LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDI   92 (126)
Q Consensus        24 ~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~   92 (126)
                      .+.+|||||...           +...+..+++.+|++++|+|+++.........++..+ ..   .+.|+++|+||+|+
T Consensus       155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l-~~---~~~pvilVlNK~Dl  230 (550)
T 2qpt_A          155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGAL-RG---HEDKIRVVLNKADM  230 (550)
T ss_dssp             HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHT-TT---CGGGEEEEEECGGG
T ss_pred             CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHH-Hh---cCCCEEEEEECCCc
Confidence            589999999865           5667777889999999999998765555555555544 32   35799999999998


Q ss_pred             CCC
Q psy6566          93 KNS   95 (126)
Q Consensus        93 ~~~   95 (126)
                      ...
T Consensus       231 ~~~  233 (550)
T 2qpt_A          231 VET  233 (550)
T ss_dssp             SCH
T ss_pred             cCH
Confidence            753

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=98.87  E-value=2.9e-09  Score=72.10  Aligned_cols=98  Identities=11%  Similarity=0.079  Sum_probs=56.7

Q ss_pred             CEEEEEEEcCCCc-------------chHHHHHhhccCCcEEEE-EEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEE
Q psy6566          22 NIHFIMWDLGGQQ-------------SLRAAWSTYYTNTEFVIL-VIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYA   87 (126)
Q Consensus        22 ~~~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~~l~-v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~   87 (126)
                      ...+.+|||||..             .+..+...|++.++.+++ +.|.+..-.-.+...++..+ ..   .+.|+++|+
T Consensus       129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~-~~---~~~~~i~V~  204 (353)
T 2x2e_A          129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEV-DP---QGQRTIGVI  204 (353)
T ss_dssp             CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHH-CT---TCTTEEEEE
T ss_pred             CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHh-Cc---CCCceEEEe
Confidence            5789999999952             455677778876665555 55655422212222233333 22   478999999


Q ss_pred             ecCCCCCCCC-HHHHHhhcCcCcccCCc-eEEEEeeeeeC
Q psy6566          88 NKQDIKNSMS-PVEISNLLDLTSIKKQQ-WHIQSCCALTG  125 (126)
Q Consensus        88 nK~D~~~~~~-~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~  125 (126)
                      ||+|+.+... ...+..  ........+ ..++.+||++|
T Consensus       205 NK~Dl~~~~~~~~~~~~--~~~~~l~~~~~~v~~~SA~~~  242 (353)
T 2x2e_A          205 TKLDLMDEGTDARDVLE--NKLLPLRRGYIGVVNRSQKDI  242 (353)
T ss_dssp             ECGGGSCTTCCCHHHHT--TCSSCCTTCEEECCCCCHHHH
T ss_pred             ccccccCcchhHHHHHh--CCcccccCCceEEEeCCcccc
Confidence            9999875322 122221  111111123 46889999875

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.83  E-value=1.4e-08  Score=70.11  Aligned_cols=111  Identities=17%  Similarity=0.202  Sum_probs=68.9

Q ss_pred             ccCceEEEEEECC-EEEEEEEcCCCcch-------HHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCC-CCCCC
Q psy6566          10 TIGSNVEEVIWKN-IHFIMWDLGGQQSL-------RAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNH-EDLSK   80 (126)
Q Consensus        10 Ti~~~~~~~~~~~-~~~~i~Dt~G~~~~-------~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~   80 (126)
                      |+..+...+.+.+ ..+.+||++|....       ........+.++.+++++|++ ...+.++..+..++... ..+..
T Consensus       191 Tl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~  269 (416)
T 1udx_A          191 TLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLR  269 (416)
T ss_dssp             SSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHH
T ss_pred             eecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhc
Confidence            3444444555654 88999999997431       112223356899999999998 55666666655554432 11235


Q ss_pred             CeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          81 AAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        81 ~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .|.++++||+|+........+...     .+..+.+++.+||++++
T Consensus       270 ~P~ILVlNKlDl~~~~~~~~l~~~-----l~~~g~~vi~iSA~~g~  310 (416)
T 1udx_A          270 RPSLVALNKVDLLEEEAVKALADA-----LAREGLAVLPVSALTGA  310 (416)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHH-----HHTTTSCEEECCTTTCT
T ss_pred             CCEEEEEECCChhhHHHHHHHHHH-----HHhcCCeEEEEECCCcc
Confidence            789999999998763111122221     12335678999999864

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.82  E-value=7.6e-10  Score=75.38  Aligned_cols=88  Identities=15%  Similarity=0.137  Sum_probs=55.2

Q ss_pred             CCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCC-CHHHHHhhcCcCc
Q psy6566          31 GGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSM-SPVEISNLLDLTS  109 (126)
Q Consensus        31 ~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~~~~v~~~~~~~~  109 (126)
                      ..++.|+..+..+.+.++++++|+|++++.     ..|...+.+.  ..+.|+++|+||+|+.... ..+.+.+... ..
T Consensus        54 ~~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~--~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~-~~  125 (368)
T 3h2y_A           54 LTDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRF--VGNNKVLLVGNKADLIPKSVKHDKVKHWMR-YS  125 (368)
T ss_dssp             --CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHH--SSSSCEEEEEECGGGSCTTSCHHHHHHHHH-HH
T ss_pred             CCHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHH--hCCCcEEEEEEChhcCCcccCHHHHHHHHH-HH
Confidence            357889999999999999999999998753     1222222111  1478999999999996532 2222222211 01


Q ss_pred             ccCCce---EEEEeeeeeCC
Q psy6566         110 IKKQQW---HIQSCCALTGE  126 (126)
Q Consensus       110 ~~~~~~---~~~~~Sa~~~~  126 (126)
                      .+..++   .++.+||++|+
T Consensus       126 ~~~~g~~~~~v~~iSA~~g~  145 (368)
T 3h2y_A          126 AKQLGLKPEDVFLISAAKGQ  145 (368)
T ss_dssp             HHHTTCCCSEEEECCTTTCT
T ss_pred             HHHcCCCcccEEEEeCCCCc
Confidence            112233   78999999874

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=98.79  E-value=1.2e-09  Score=75.01  Aligned_cols=37  Identities=24%  Similarity=0.225  Sum_probs=23.7

Q ss_pred             EEEEEEEcCCCcch----HHHHH---hhccCCcEEEEEEECCCc
Q psy6566          23 IHFIMWDLGGQQSL----RAAWS---TYYTNTEFVILVIDSTDR   59 (126)
Q Consensus        23 ~~~~i~Dt~G~~~~----~~~~~---~~~~~~~~~l~v~d~~~~   59 (126)
                      ..+.+|||||+...    +.+..   .+++.+|++++|+|+++.
T Consensus        71 ~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           71 IPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             EEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred             EEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            68999999998542    22333   347899999999999875

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.74  E-value=1.6e-09  Score=73.79  Aligned_cols=89  Identities=11%  Similarity=0.084  Sum_probs=55.4

Q ss_pred             cCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCC-CHHHHHhhcCcC
Q psy6566          30 LGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSM-SPVEISNLLDLT  108 (126)
Q Consensus        30 t~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~~~~v~~~~~~~  108 (126)
                      ...++.|+....++++.++++++|+|+.++++  .....+...+     .+.|+++|+||+|+.... ..+.+.+... .
T Consensus        55 ~~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~-~  126 (369)
T 3ec1_A           55 PLDDDDFLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMR-R  126 (369)
T ss_dssp             ----CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHH-H
T ss_pred             cCCHHHHHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHH-H
Confidence            34589999999999999999999999998753  1111122222     468999999999996532 2222222211 1


Q ss_pred             cccCCce---EEEEeeeeeCC
Q psy6566         109 SIKKQQW---HIQSCCALTGE  126 (126)
Q Consensus       109 ~~~~~~~---~~~~~Sa~~~~  126 (126)
                      ..+..++   .++.+||++|+
T Consensus       127 ~~~~~g~~~~~v~~iSA~~g~  147 (369)
T 3ec1_A          127 MAEELGLCPVDVCLVSAAKGI  147 (369)
T ss_dssp             HHHTTTCCCSEEEECBTTTTB
T ss_pred             HHHHcCCCcccEEEEECCCCC
Confidence            1122233   68999999873

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=98.74  E-value=6.1e-10  Score=75.46  Aligned_cols=94  Identities=11%  Similarity=0.065  Sum_probs=56.7

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHH
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVE  100 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~  100 (126)
                      .+..+.+|||+|....   .....+.+|.+++|+|....+....+        . ......|+++++||+|+.+......
T Consensus       170 ~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l--------~-~~~~~~p~ivVlNK~Dl~~~~~~~~  237 (355)
T 3p32_A          170 AGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGI--------K-KGVLELADIVVVNKADGEHHKEARL  237 (355)
T ss_dssp             TTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTC--------C-TTSGGGCSEEEEECCCGGGHHHHHH
T ss_pred             CCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHH--------H-HhHhhcCCEEEEECCCCcChhHHHH
Confidence            5688999999996442   22345889999999997654433211        1 1123569999999999865311111


Q ss_pred             HHhhcCcC----ccc--CCceEEEEeeeeeCC
Q psy6566         101 ISNLLDLT----SIK--KQQWHIQSCCALTGE  126 (126)
Q Consensus       101 v~~~~~~~----~~~--~~~~~~~~~Sa~~~~  126 (126)
                      ....+...    ...  ..+.+++.+||++|+
T Consensus       238 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~  269 (355)
T 3p32_A          238 AARELSAAIRLIYPREALWRPPVLTMSAVEGR  269 (355)
T ss_dssp             HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTB
T ss_pred             HHHHHHHHHhhccccccCCCCceEEEEcCCCC
Confidence            11111100    000  123579999999874

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=98.72  E-value=1.6e-09  Score=70.17  Aligned_cols=68  Identities=13%  Similarity=0.012  Sum_probs=42.6

Q ss_pred             EEEEEEEcCCCcchHHHHH------hhccCCcEEEEEEECCCcccHHHHHHHH---HHHhCCCCCCCCeEEEEEecCCCC
Q psy6566          23 IHFIMWDLGGQQSLRAAWS------TYYTNTEFVILVIDSTDRERISLTKEEL---YKMLNHEDLSKAAVLIYANKQDIK   93 (126)
Q Consensus        23 ~~~~i~Dt~G~~~~~~~~~------~~~~~~~~~l~v~d~~~~~~~~~~~~~~---~~~~~~~~~~~~piilv~nK~D~~   93 (126)
                      ..+.+|||||+........      ..+.. +.+++++|........+....+   ......   .+.|+++++||+|+.
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~---~~~p~~iv~NK~D~~  184 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR---LGATTIPALNKVDLL  184 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH---HTSCEEEEECCGGGC
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc---cCCCeEEEEeccccc
Confidence            4799999999977644321      24556 8899999875433332222111   111111   367999999999986


Q ss_pred             C
Q psy6566          94 N   94 (126)
Q Consensus        94 ~   94 (126)
                      .
T Consensus       185 ~  185 (262)
T 1yrb_A          185 S  185 (262)
T ss_dssp             C
T ss_pred             c
Confidence            5

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=98.67  E-value=2.3e-07  Score=68.00  Aligned_cols=69  Identities=13%  Similarity=0.097  Sum_probs=56.2

Q ss_pred             CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCC
Q psy6566          22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNS   95 (126)
Q Consensus        22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~   95 (126)
                      +..++++||||+-.|.......++-+|++|+|+|+.+--.. .....|+++.+.    ++|.++++||+|....
T Consensus        84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~-qT~~v~~~a~~~----~lp~i~~iNKiDr~~a  152 (709)
T 4fn5_A           84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEP-QSETVWRQANKY----GVPRIVYVNKMDRQGA  152 (709)
T ss_dssp             CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCH-HHHHHHHHHHHH----TCCEEEEEECSSSTTC
T ss_pred             CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCch-hHHHHHHHHHHc----CCCeEEEEccccccCc
Confidence            57899999999999999999999999999999999864322 234456666543    6899999999998764

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=98.66  E-value=1.7e-08  Score=73.13  Aligned_cols=82  Identities=18%  Similarity=0.216  Sum_probs=62.6

Q ss_pred             ccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEec
Q psy6566          10 TIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANK   89 (126)
Q Consensus        10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK   89 (126)
                      ||....-++.+++..+.+.||||+..|.......++-+|++|+|+|+.+--.. .....|..+.+.    ++|.+++.||
T Consensus        54 TI~s~~~~~~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~-qT~~v~~~a~~~----~lp~i~~INK  128 (638)
T 3j25_A           54 TIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQA-QTRILFHALRKM----GIPTIFFINK  128 (638)
T ss_dssp             CSSCCCCCCBCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCS-HHHHHHHHHHHH----TCSCEECCEE
T ss_pred             cEEeeeEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcH-HHHHHHHHHHHc----CCCeEEEEec
Confidence            44444445566889999999999999999999999999999999998864222 234445555443    6888999999


Q ss_pred             CCCCCCC
Q psy6566          90 QDIKNSM   96 (126)
Q Consensus        90 ~D~~~~~   96 (126)
                      +|.....
T Consensus       129 mDr~~a~  135 (638)
T 3j25_A          129 IDQNGID  135 (638)
T ss_dssp             CCSSSCC
T ss_pred             cccccCC
Confidence            9987643

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=98.62  E-value=2.2e-07  Score=68.39  Aligned_cols=101  Identities=9%  Similarity=0.095  Sum_probs=60.3

Q ss_pred             CCEEEEEEEcCCCcc-------------hHHHHHhhc-cCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEE
Q psy6566          21 KNIHFIMWDLGGQQS-------------LRAAWSTYY-TNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIY   86 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~-------------~~~~~~~~~-~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv   86 (126)
                      ....+.++||||...             ...+...|+ +.+|.+++|+|++......+.......+ ..   .+.|+++|
T Consensus       148 ~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L-~~---~g~pvIlV  223 (772)
T 3zvr_A          148 HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV-DP---QGQRTIGV  223 (772)
T ss_dssp             TCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHH-CT---TCSSEEEE
T ss_pred             CCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHH-Hh---cCCCEEEE
Confidence            456799999999533             333444555 5789999999988643333332233333 32   46899999


Q ss_pred             EecCCCCCCCC-HHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          87 ANKQDIKNSMS-PVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        87 ~nK~D~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +||+|+..... ...+... ..........+++.+||++|.
T Consensus       224 lNKiDlv~~~~~~~~il~~-~~~~l~lg~~~VV~iSA~~G~  263 (772)
T 3zvr_A          224 ITKLDLMDEGTDARDVLEN-KLLPLRRGYIGVVNRSQKDID  263 (772)
T ss_dssp             EECTTSSCTTCCSHHHHTT-CSSCCSSCEEECCCCCCEESS
T ss_pred             EeCcccCCcchhhHHHHHH-HhhhhhccCCceEEecccccc
Confidence            99999875322 1222221 001111123468889999874

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=98.61  E-value=2.6e-07  Score=62.78  Aligned_cols=50  Identities=16%  Similarity=0.121  Sum_probs=37.0

Q ss_pred             CccCceEEEEEECC-----------------EEEEEEEcCCCcchHH-------HHHhhccCCcEEEEEEECCC
Q psy6566           9 PTIGSNVEEVIWKN-----------------IHFIMWDLGGQQSLRA-------AWSTYYTNTEFVILVIDSTD   58 (126)
Q Consensus         9 pTi~~~~~~~~~~~-----------------~~~~i~Dt~G~~~~~~-------~~~~~~~~~~~~l~v~d~~~   58 (126)
                      +|++.+...+.+.+                 ..+.+|||||+..+..       ....+++.+|++++|+|+++
T Consensus        35 tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           35 CTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             CCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             ceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence            46666555566643                 6899999999987642       22345789999999999986

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.56  E-value=4e-08  Score=64.66  Aligned_cols=87  Identities=13%  Similarity=0.105  Sum_probs=53.2

Q ss_pred             EEEcCCCc-chHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhc
Q psy6566          27 MWDLGGQQ-SLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLL  105 (126)
Q Consensus        27 i~Dt~G~~-~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~  105 (126)
                      |-..||+. .........++.+|+++.|+|+.++.+....  .+.+++     .+.|.++++||+|+......+...+++
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~--~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~   75 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNP--MIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF   75 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCH--HHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCH--HHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence            44578875 4455566679999999999999988665421  133333     468999999999997631112222222


Q ss_pred             CcCcccCCceEEEEeeeeeC
Q psy6566         106 DLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus       106 ~~~~~~~~~~~~~~~Sa~~~  125 (126)
                           +..+++++.+||++|
T Consensus        76 -----~~~g~~~i~iSA~~~   90 (282)
T 1puj_A           76 -----ENQGIRSLSINSVNG   90 (282)
T ss_dssp             -----HTTTCCEEECCTTTC
T ss_pred             -----HhcCCcEEEEECCCc
Confidence                 123457889999876

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.53  E-value=1.7e-08  Score=68.10  Aligned_cols=94  Identities=16%  Similarity=0.141  Sum_probs=53.3

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHH
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVE  100 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~  100 (126)
                      ++..+.+|||+|.......   ..+.+|++++|+|....+.+.....   ..      .+.|.++++||+|+.+......
T Consensus       147 ~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv~NK~Dl~~~~~~~~  214 (341)
T 2p67_A          147 AGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIVINKDDGDNHTNVAI  214 (341)
T ss_dssp             TTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH------HHHCSEEEECCCCTTCHHHHHH
T ss_pred             cCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEEEECCCCCChHHHHH
Confidence            5778999999997655433   4689999999999865432111100   00      1468899999999875311111


Q ss_pred             ----HHhhcCcCc--ccCCceEEEEeeeeeCC
Q psy6566         101 ----ISNLLDLTS--IKKQQWHIQSCCALTGE  126 (126)
Q Consensus       101 ----v~~~~~~~~--~~~~~~~~~~~Sa~~~~  126 (126)
                          +...+....  ......+++.+||++|+
T Consensus       215 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~  246 (341)
T 2p67_A          215 ARHMYESALHILRRKYDEWQPRVLTCSALEKR  246 (341)
T ss_dssp             HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTB
T ss_pred             HHHHHHHHHHhccccccCCCCcEEEeeCCCCC
Confidence                111110000  01113478999999874

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.50  E-value=1.7e-08  Score=66.94  Aligned_cols=108  Identities=13%  Similarity=0.117  Sum_probs=50.4

Q ss_pred             CccCceEEEEEE----CCEEEEEEEcCCC-------cchHHHHH-------hhccC-------------CcEEEEEEECC
Q psy6566           9 PTIGSNVEEVIW----KNIHFIMWDLGGQ-------QSLRAAWS-------TYYTN-------------TEFVILVIDST   57 (126)
Q Consensus         9 pTi~~~~~~~~~----~~~~~~i~Dt~G~-------~~~~~~~~-------~~~~~-------------~~~~l~v~d~~   57 (126)
                      +|++.....+.+    ....+.+|||+|.       +.+..+..       .+++.             +++++|+.+.+
T Consensus        58 ~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt  137 (301)
T 2qnr_A           58 RTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF  137 (301)
T ss_dssp             -------CEEEEC---CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSS
T ss_pred             CcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCc
Confidence            455543333333    2468999999998       55555443       44332             34466655543


Q ss_pred             CcccHHHHH-HHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHH--hhcCcCcccCCceEEEEeeeeeC
Q psy6566          58 DRERISLTK-EELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEIS--NLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        58 ~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~--~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      . .+++... ..+..+ .    ...|+++|+||.|+...   .++.  ......++...+++++++||++|
T Consensus       138 ~-~~Ld~~~~~~l~~l-~----~~~~iilV~~K~Dl~~~---~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~  199 (301)
T 2qnr_A          138 G-HGLKPLDVAFMKAI-H----NKVNIVPVIAKADTLTL---KERERLKKRILDEIEEHNIKIYHLPDAES  199 (301)
T ss_dssp             S-SSCCHHHHHHHHHH-T----TTSCEEEEECCGGGSCH---HHHHHHHHHHHHHHHHTTCCCCCCC----
T ss_pred             c-cCCCHHHHHHHHHH-H----hcCCEEEEEEeCCCCCH---HHHHHHHHHHHHHHHHcCCeEEecCCccc
Confidence            2 1233322 223332 1    35799999999998652   2221  11222333445678999999876

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.40  E-value=9.4e-08  Score=66.08  Aligned_cols=94  Identities=11%  Similarity=0.109  Sum_probs=43.3

Q ss_pred             EEEEEEEcCCCcchH-------HH------------------HHhhccCCc--EEEEEEECCCcccHHHHH-HHHHHHhC
Q psy6566          23 IHFIMWDLGGQQSLR-------AA------------------WSTYYTNTE--FVILVIDSTDRERISLTK-EELYKMLN   74 (126)
Q Consensus        23 ~~~~i~Dt~G~~~~~-------~~------------------~~~~~~~~~--~~l~v~d~~~~~~~~~~~-~~~~~~~~   74 (126)
                      ..+.+|||+|.....       .+                  .+.+++.++  +++|+.+.+. .++.... .++..+ .
T Consensus        88 ~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L-~  165 (418)
T 2qag_C           88 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRL-H  165 (418)
T ss_dssp             EEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHH-T
T ss_pred             cceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHH-h
Confidence            478999999986541       11                  112234444  4555444331 2333333 344444 2


Q ss_pred             CCCCCCCeEEEEEecCCCCCCCCHHHHHh--hcCcCcccCCceEEEEeeeeeC
Q psy6566          75 HEDLSKAAVLIYANKQDIKNSMSPVEISN--LLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        75 ~~~~~~~piilv~nK~D~~~~~~~~~v~~--~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                          .+.|+++|+||+|+...   .++..  ......+...+++++++||+++
T Consensus       166 ----~~v~iIlVinK~Dll~~---~ev~~~k~~i~~~~~~~~i~~~~~sa~~~  211 (418)
T 2qag_C          166 ----EKVNIIPLIAKADTLTP---EECQQFKKQIMKEIQEHKIKIYEFPETDD  211 (418)
T ss_dssp             ----TTSEEEEEEESTTSSCH---HHHHHHHHHHHHHHHHHTCCCCCCC----
T ss_pred             ----ccCcEEEEEEcccCccH---HHHHHHHHHHHHHHHHcCCeEEeCCCCCC
Confidence                36899999999998652   23222  1111222233556777787764

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.30  E-value=2.8e-07  Score=62.38  Aligned_cols=94  Identities=15%  Similarity=0.114  Sum_probs=50.7

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCH--
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSP--   98 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~--   98 (126)
                      .+..+.++||+|....   .....+.+|.+++|+|+..........   ..+      ...|.++++||+|+.+....  
T Consensus       165 ~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~---~~i------l~~~~ivVlNK~Dl~~~~~~~~  232 (349)
T 2www_A          165 AGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIK---RGI------IEMADLVAVTKSDGDLIVPARR  232 (349)
T ss_dssp             TTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHHHH
T ss_pred             CCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhH---HHH------HhcCCEEEEeeecCCCchhHHH
Confidence            5678899999996322   233467899999999987643222111   111      24578999999998642110  


Q ss_pred             --HHHHhhcCcCcc--cCCceEEEEeeeeeCC
Q psy6566          99 --VEISNLLDLTSI--KKQQWHIQSCCALTGE  126 (126)
Q Consensus        99 --~~v~~~~~~~~~--~~~~~~~~~~Sa~~~~  126 (126)
                        ..+...+.....  .....+++.+||++|+
T Consensus       233 ~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~  264 (349)
T 2www_A          233 IQAEYVSALKLLRKRSQVWKPKVIRISARSGE  264 (349)
T ss_dssp             HHHHHHHHHTTCC-----CCCEEEECCTTTCT
T ss_pred             HHHHHHHHHHhcCccccCCCceEEEEecCCCC
Confidence              112211111100  0113478899999874

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=98.23  E-value=1e-07  Score=60.11  Aligned_cols=90  Identities=12%  Similarity=0.188  Sum_probs=52.4

Q ss_pred             CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCC--CCHH
Q psy6566          22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNS--MSPV   99 (126)
Q Consensus        22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~   99 (126)
                      +..+.+|||+|+-...   ..+...++.+++|+|+++....  ...+. ..      .+.|+++++||+|+.+.  ....
T Consensus       108 ~~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~~~~-~~------~~~~~iiv~NK~Dl~~~~~~~~~  175 (221)
T 2wsm_A          108 DCDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VEKHP-EI------FRVADLIVINKVALAEAVGADVE  175 (221)
T ss_dssp             TCSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HHHCH-HH------HHTCSEEEEECGGGHHHHTCCHH
T ss_pred             CCCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--hhhhh-hh------hhcCCEEEEecccCCcchhhHHH
Confidence            4578999999951111   1122367889999998764321  11111 11      24688999999998542  2333


Q ss_pred             HHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566         100 EISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus       100 ~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ++...+...   ....+++++||++|+
T Consensus       176 ~~~~~~~~~---~~~~~i~~~Sa~~g~  199 (221)
T 2wsm_A          176 KMKADAKLI---NPRAKIIEMDLKTGK  199 (221)
T ss_dssp             HHHHHHHHH---CTTSEEEECBTTTTB
T ss_pred             HHHHHHHHh---CCCCeEEEeecCCCC
Confidence            333322110   124589999999873

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=98.08  E-value=4.5e-06  Score=56.85  Aligned_cols=37  Identities=11%  Similarity=0.072  Sum_probs=29.1

Q ss_pred             CEEEEEEEcCCCcch-------HHHHHhhccCCcEEEEEEECCC
Q psy6566          22 NIHFIMWDLGGQQSL-------RAAWSTYYTNTEFVILVIDSTD   58 (126)
Q Consensus        22 ~~~~~i~Dt~G~~~~-------~~~~~~~~~~~~~~l~v~d~~~   58 (126)
                      +..+.+|||||+...       ......+++.+|++++|+|+++
T Consensus        68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            467999999998664       2234446899999999999975

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=98.07  E-value=1.9e-05  Score=53.98  Aligned_cols=84  Identities=15%  Similarity=0.133  Sum_probs=56.4

Q ss_pred             CCccCceEEEEEECCEEEEEEEcCCCcch-------HHHHHhhccCCcEEEEEEECCCcccH-HHHHHHHHHHhCCCCCC
Q psy6566           8 SPTIGSNVEEVIWKNIHFIMWDLGGQQSL-------RAAWSTYYTNTEFVILVIDSTDRERI-SLTKEELYKMLNHEDLS   79 (126)
Q Consensus         8 ~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~~~~~l~v~d~~~~~~~-~~~~~~~~~~~~~~~~~   79 (126)
                      -+|+......+.+.+..+++.||||...-       .......++.||++++|+|..++..- +.+...+...  .....
T Consensus       104 ftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~--~~~l~  181 (376)
T 4a9a_A          104 FTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHHKQIIEKELEGV--GIRLN  181 (376)
T ss_dssp             SSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHHHHHHHHHHHHT--TEEET
T ss_pred             CceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHHHHHHHHHHHHHh--hHhhc
Confidence            46777788888899999999999995321       12233457889999999999876322 2222222222  11224


Q ss_pred             CCeEEEEEecCCCC
Q psy6566          80 KAAVLIYANKQDIK   93 (126)
Q Consensus        80 ~~piilv~nK~D~~   93 (126)
                      ..|..++.||+|..
T Consensus       182 ~k~~~i~~nK~d~~  195 (376)
T 4a9a_A          182 KTPPDILIKKKEKG  195 (376)
T ss_dssp             CCCCCEEEEECSSS
T ss_pred             cCChhhhhhHhhhh
Confidence            56788899999964

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.94  E-value=4.7e-06  Score=55.45  Aligned_cols=78  Identities=10%  Similarity=0.081  Sum_probs=46.7

Q ss_pred             HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCC----HHHHHhhcCcCcccCCce
Q psy6566          40 WSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMS----PVEISNLLDLTSIKKQQW  115 (126)
Q Consensus        40 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----~~~v~~~~~~~~~~~~~~  115 (126)
                      .+..+.++|.+++|+|+.++..-...   +..++......++|.+++.||+|+.....    ...+...+     ...++
T Consensus        80 ~R~~~anvD~v~~V~~~~~p~~~~~~---i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y-----~~~g~  151 (307)
T 1t9h_A           80 IRPPICNVDQAVLVFSAVQPSFSTAL---LDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDY-----RNIGY  151 (307)
T ss_dssp             TTTTEECCCEEEEEEESTTTTCCHHH---HHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHH-----HHHTC
T ss_pred             hHHHHHhCCEEEEEEeCCCCCCCHHH---HHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHH-----HhCCC
Confidence            34468899999999999876543332   22332111115789999999999976421    12222222     11234


Q ss_pred             EEEEeeeeeC
Q psy6566         116 HIQSCCALTG  125 (126)
Q Consensus       116 ~~~~~Sa~~~  125 (126)
                      +++.+||++|
T Consensus       152 ~v~~~sa~~~  161 (307)
T 1t9h_A          152 DVYLTSSKDQ  161 (307)
T ss_dssp             CEEECCHHHH
T ss_pred             eEEEEecCCC
Confidence            6788887654

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=97.67  E-value=5.1e-06  Score=54.08  Aligned_cols=82  Identities=15%  Similarity=0.092  Sum_probs=46.9

Q ss_pred             cCCCcch-HHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcC
Q psy6566          30 LGGQQSL-RAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLT  108 (126)
Q Consensus        30 t~G~~~~-~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~  108 (126)
                      .||+... .......++.+|.++.|+|+.++.+.....  +. +     . ++|.+++.||+|+......+.+...+.  
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~--   72 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFK--   72 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHH--
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHH--
Confidence            3565432 234455689999999999998876543210  11 1     1 789999999999976311122222221  


Q ss_pred             cccCCceEEEEeeeeeCC
Q psy6566         109 SIKKQQWHIQSCCALTGE  126 (126)
Q Consensus       109 ~~~~~~~~~~~~Sa~~~~  126 (126)
                         ..++++ .+||++|.
T Consensus        73 ---~~g~~v-~iSa~~~~   86 (262)
T 3cnl_A           73 ---KQGKRV-ITTHKGEP   86 (262)
T ss_dssp             ---HTTCCE-EECCTTSC
T ss_pred             ---HcCCeE-EEECCCCc
Confidence               123456 88888763

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.62  E-value=5.8e-05  Score=51.87  Aligned_cols=52  Identities=13%  Similarity=0.057  Sum_probs=31.2

Q ss_pred             CCccCceEEEEEEC-----------------CEEEEEEEcCCCcchHH-------HHHhhccCCcEEEEEEECCCc
Q psy6566           8 SPTIGSNVEEVIWK-----------------NIHFIMWDLGGQQSLRA-------AWSTYYTNTEFVILVIDSTDR   59 (126)
Q Consensus         8 ~pTi~~~~~~~~~~-----------------~~~~~i~Dt~G~~~~~~-------~~~~~~~~~~~~l~v~d~~~~   59 (126)
                      .+|++.+...+.+.                 ...+.+|||||+.....       .+..+++.+|++++|+|+++.
T Consensus        54 ~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~  129 (396)
T 2ohf_A           54 FCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFED  129 (396)
T ss_dssp             ----CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC---
T ss_pred             ccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence            35666666666653                 23599999999877554       466778999999999998754

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.55  E-value=0.00011  Score=49.46  Aligned_cols=62  Identities=15%  Similarity=0.175  Sum_probs=38.1

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~   94 (126)
                      .+..+.++||+|...-..   ...+.+|.+++++|....+..+.+        .. .....+.+++.||+|+..
T Consensus       146 ~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i--------~~-~i~~~~~ivvlNK~Dl~~  207 (337)
T 2qm8_A          146 AGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGI--------KK-GIFELADMIAVNKADDGD  207 (337)
T ss_dssp             TTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------C--------CT-THHHHCSEEEEECCSTTC
T ss_pred             CCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHH--------HH-HHhccccEEEEEchhccC
Confidence            578899999999754332   235789999999997543221111        00 001345577789999753

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.29  E-value=0.00022  Score=48.39  Aligned_cols=76  Identities=14%  Similarity=0.142  Sum_probs=42.2

Q ss_pred             hccCCcEEEEEEECCCccc-HHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEee
Q psy6566          43 YYTNTEFVILVIDSTDRER-ISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC  121 (126)
Q Consensus        43 ~~~~~~~~l~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~S  121 (126)
                      ...++|.+++|... .|.. ...+..++... ..   .++|.++|+||+|+........+.....  .....+++++.+|
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a-~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~--~y~~~G~~v~~~S  199 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGC-ET---LQVEPLIVLNKIDLLDDEGMDFVNEQMD--IYRNIGYRVLMVS  199 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHH-HH---HTCEEEEEEECGGGCCHHHHHHHHHHHH--HHHTTTCCEEECB
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHH-Hh---cCCCEEEEEECccCCCchhHHHHHHHHH--HHHhCCCcEEEEe
Confidence            36789999987654 4543 33222222211 11   4678899999999976321011111111  1123456788999


Q ss_pred             eeeC
Q psy6566         122 ALTG  125 (126)
Q Consensus       122 a~~~  125 (126)
                      |++|
T Consensus       200 a~~~  203 (358)
T 2rcn_A          200 SHTQ  203 (358)
T ss_dssp             TTTT
T ss_pred             cCCC
Confidence            8875

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.73  E-value=0.0056  Score=43.44  Aligned_cols=67  Identities=15%  Similarity=0.224  Sum_probs=41.0

Q ss_pred             CCEEEEEEEcCCCcchH-HHHH---hh--ccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE-EEEEecCCCC
Q psy6566          21 KNIHFIMWDLGGQQSLR-AAWS---TY--YTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV-LIYANKQDIK   93 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~-~~~~---~~--~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~D~~   93 (126)
                      ++..+.|+||||..... ..+.   ..  ...++.+++|+|+.........   ...+.+     ..|+ .++.||+|..
T Consensus       182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~---a~~~~~-----~~~i~gvVlNK~D~~  253 (504)
T 2j37_W          182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ---AKAFKD-----KVDVASVIVTKLDGH  253 (504)
T ss_dssp             TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH---HHHHHH-----HHCCCCEEEECTTSC
T ss_pred             CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH---HHHHHh-----hcCceEEEEeCCccc
Confidence            56789999999976421 1111   11  2278999999998764332222   222211     2564 8899999986


Q ss_pred             CC
Q psy6566          94 NS   95 (126)
Q Consensus        94 ~~   95 (126)
                      ..
T Consensus       254 ~~  255 (504)
T 2j37_W          254 AK  255 (504)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.06  E-value=0.00073  Score=42.39  Aligned_cols=43  Identities=21%  Similarity=0.092  Sum_probs=26.3

Q ss_pred             CeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          81 AAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        81 ~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .|.++++||+|+...  ....++......   .....+++++||++|+
T Consensus       165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~g~  209 (226)
T 2hf9_A          165 TADLIVINKIDLADAVGADIKKMENDAKR---INPDAEVVLLSLKTME  209 (226)
T ss_dssp             TCSEEEEECGGGHHHHTCCHHHHHHHHHH---HCTTSEEEECCTTTCT
T ss_pred             cCCEEEEeccccCchhHHHHHHHHHHHHH---hCCCCeEEEEEecCCC
Confidence            577999999998542  223333222211   0224589999999874

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=95.10  E-value=0.056  Score=37.19  Aligned_cols=49  Identities=18%  Similarity=0.285  Sum_probs=36.6

Q ss_pred             ccCceEEEEEECC-----------------EEEEEEEcCCC-------cchHHHHHhhccCCcEEEEEEECCC
Q psy6566          10 TIGSNVEEVIWKN-----------------IHFIMWDLGGQ-------QSLRAAWSTYYTNTEFVILVIDSTD   58 (126)
Q Consensus        10 Ti~~~~~~~~~~~-----------------~~~~i~Dt~G~-------~~~~~~~~~~~~~~~~~l~v~d~~~   58 (126)
                      |+..+...+.+.+                 ..+.+||++|.       +.+.......++.+|++++|+|+.+
T Consensus        55 Ti~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           55 TIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             eecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            6667777777754                 57899999994       3344455667889999999999864

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=95.03  E-value=0.088  Score=32.18  Aligned_cols=69  Identities=13%  Similarity=0.114  Sum_probs=45.1

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC-CCCCeEEEEEecCCCC
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED-LSKAAVLIYANKQDIK   93 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~D~~   93 (126)
                      +...+.++|+++...  ......+..+|.+++++..+.. + ..+...+..+.+... .++.++.++.|+.|..
T Consensus        74 ~~yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~  143 (206)
T 4dzz_A           74 ADYDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM  143 (206)
T ss_dssp             TTSSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred             CCCCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence            346789999998753  2334456679999999986543 4 555554444433211 2456889999999854

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=94.75  E-value=0.21  Score=34.83  Aligned_cols=66  Identities=21%  Similarity=0.210  Sum_probs=40.7

Q ss_pred             CCEEEEEEEcCCCcchHHH-HH---h--hccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC-e-EEEEEecCCC
Q psy6566          21 KNIHFIMWDLGGQQSLRAA-WS---T--YYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA-A-VLIYANKQDI   92 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~-~~---~--~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-p-iilv~nK~D~   92 (126)
                      ++..+.++||+|....... ..   .  .+..++.+++|+|+.....   .......+ .    ... | ..++.||.|.
T Consensus       179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~-~----~~~~~i~gvVlnK~D~  250 (432)
T 2v3c_C          179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF-K----EAVGEIGSIIVTKLDG  250 (432)
T ss_dssp             SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH-H----TTSCSCEEEEEECSSS
T ss_pred             hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH-h----hcccCCeEEEEeCCCC
Confidence            5678999999997654221 11   1  1236899999999865432   22222222 1    124 5 7899999997


Q ss_pred             CC
Q psy6566          93 KN   94 (126)
Q Consensus        93 ~~   94 (126)
                      ..
T Consensus       251 ~~  252 (432)
T 2v3c_C          251 SA  252 (432)
T ss_dssp             CS
T ss_pred             cc
Confidence            54

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=94.60  E-value=0.46  Score=29.76  Aligned_cols=81  Identities=12%  Similarity=0.158  Sum_probs=52.8

Q ss_pred             CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHH
Q psy6566          22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEI  101 (126)
Q Consensus        22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v  101 (126)
                      ...+.++|+++....  .....+..+|.+++++... ..+...+...+..+.+. ..+...+-++.|+.+.......+++
T Consensus       118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~-~~~~~~~~~v~N~~~~~~~~~~~~~  193 (245)
T 3ea0_A          118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEF-EKPISRIEIILNRADTNSRITSDEI  193 (245)
T ss_dssp             HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTC-SSCCSCEEEEEESTTSCTTSCHHHH
T ss_pred             hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHh-CCCccceEEEEecCCCCCCCCHHHH
Confidence            356889999876433  3344577899999998754 55666676655555333 2234567899999987655455555


Q ss_pred             HhhcC
Q psy6566         102 SNLLD  106 (126)
Q Consensus       102 ~~~~~  106 (126)
                      .+.++
T Consensus       194 ~~~~~  198 (245)
T 3ea0_A          194 EKVIG  198 (245)
T ss_dssp             HHHHT
T ss_pred             HHHhC
Confidence            55544

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=93.93  E-value=0.14  Score=35.79  Aligned_cols=67  Identities=21%  Similarity=0.155  Sum_probs=39.5

Q ss_pred             CCEEEEEEEcCCCcchHH-----HHH-hhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566          21 KNIHFIMWDLGGQQSLRA-----AWS-TYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~-----~~~-~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~   94 (126)
                      ++..+.++||+|......     +.. .....++.+++|+|++......+.   ...+.+.    -.+..++.||.|...
T Consensus       181 ~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~---a~~f~~~----~~i~gVIlTKlD~~~  253 (443)
T 3dm5_A          181 KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ---ALAFKEA----TPIGSIIVTKLDGSA  253 (443)
T ss_dssp             TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH---HHHHHHS----CTTEEEEEECCSSCS
T ss_pred             CCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH---HHHHHhh----CCCeEEEEECCCCcc
Confidence            357899999999643211     111 113358999999998754332222   2222222    124568999999764

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=93.77  E-value=0.18  Score=33.29  Aligned_cols=66  Identities=20%  Similarity=0.149  Sum_probs=40.2

Q ss_pred             CCEEEEEEEcCCCcc--hHH-HHH-----hhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEecCC
Q psy6566          21 KNIHFIMWDLGGQQS--LRA-AWS-----TYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLIYANKQD   91 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~--~~~-~~~-----~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D   91 (126)
                      ++..+.+.||||...  ... +..     .....++.+++|+|.....   +.......+..     ..| ..++.||.|
T Consensus       179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~-----~~~i~gvVlnk~D  250 (297)
T 1j8m_F          179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ-----ASKIGTIIITKMD  250 (297)
T ss_dssp             TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH-----TCTTEEEEEECGG
T ss_pred             CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh-----hCCCCEEEEeCCC
Confidence            456799999999876  322 111     1244689999999976432   22222222221     244 678899999


Q ss_pred             CCC
Q psy6566          92 IKN   94 (126)
Q Consensus        92 ~~~   94 (126)
                      ...
T Consensus       251 ~~~  253 (297)
T 1j8m_F          251 GTA  253 (297)
T ss_dssp             GCT
T ss_pred             CCc
Confidence            754

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=92.84  E-value=0.77  Score=29.34  Aligned_cols=67  Identities=10%  Similarity=0.093  Sum_probs=41.7

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEE-EEEecCCC
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVL-IYANKQDI   92 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~D~   92 (126)
                      +...+.+.|+|+..............+|.++++.... ..+...+...+..+ +.   .+.+++ ++.|+.|.
T Consensus       127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l-~~---~~~~~~gvV~N~~~~  194 (262)
T 2ph1_A          127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQ-ELTAVIVEKAINMA-EE---TNTSVLGLVENMSYF  194 (262)
T ss_dssp             CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSS-SCCHHHHHHHHHHH-HT---TTCCEEEEEETTCCE
T ss_pred             cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCc-cchHHHHHHHHHHH-Hh---CCCCEEEEEECCCcc
Confidence            3567899999986543222222223689999998755 44566665555444 33   245666 89999873

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=92.61  E-value=0.82  Score=29.19  Aligned_cols=66  Identities=6%  Similarity=0.091  Sum_probs=43.9

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCC
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQD   91 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D   91 (126)
                      +...+.++|+++....  .....+..+|.+++++... ..+...+......+.+..  .+.++.++.|+.+
T Consensus       143 ~~yD~viiD~pp~~~~--~~~~~l~~aD~vivv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~~vv~N~~~  208 (267)
T 3k9g_A          143 YKYDYIVIDTNPSLDV--TLKNALLCSDYVIIPMTAE-KWAVESLDLFNFFVRKLN--LFLPIFLIITRFK  208 (267)
T ss_dssp             TTCSEEEEEECSSCSH--HHHHHHTTCSEEEEEEESC-TTHHHHHHHHHHHHHTTT--CCCCEEEEEEEEC
T ss_pred             cCCCEEEEECcCCccH--HHHHHHHHCCeEEEEeCCC-hHHHHHHHHHHHHHHHHh--ccCCEEEEEeccc
Confidence            4467899999986533  3444566799999999864 455665655444443331  3567789999984

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=91.69  E-value=0.71  Score=28.53  Aligned_cols=68  Identities=4%  Similarity=-0.017  Sum_probs=44.8

Q ss_pred             CCEEEEEEEcCCC-cchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566          21 KNIHFIMWDLGGQ-QSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        21 ~~~~~~i~Dt~G~-~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~   94 (126)
                      +...+.+.|+++. ....  ....+..+|.+++++..+ ..+...+...+..+.+.   .+.++.++.|+.|...
T Consensus        66 ~~yD~viiD~p~~~~~~~--~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~  134 (209)
T 3cwq_A           66 PKYQNIVIDTQARPEDED--LEALADGCDLLVIPSTPD-ALALDALMLTIETLQKL---GNNRFRILLTIIPPYP  134 (209)
T ss_dssp             GGCSEEEEEEECCCSSSH--HHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHT---CSSSEEEEECSBCCTT
T ss_pred             hcCCEEEEeCCCCcCcHH--HHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhc---cCCCEEEEEEecCCcc
Confidence            3456889999987 4432  333567899999998754 45566565555444332   1456889999998654

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=91.63  E-value=0.86  Score=31.82  Aligned_cols=67  Identities=16%  Similarity=0.154  Sum_probs=39.7

Q ss_pred             CCEEEEEEEcCCCcc--h--H--HHHHh--hccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCC
Q psy6566          21 KNIHFIMWDLGGQQS--L--R--AAWST--YYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDI   92 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~--~--~--~~~~~--~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~   92 (126)
                      ++..+.+.||||...  .  .  .....  ..-..+.+++|+|+.......+....+.+.+       .+..++.||.|.
T Consensus       178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~~-------~~~gVIlTKlD~  250 (433)
T 3kl4_A          178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQAS-------PIGSVIITKMDG  250 (433)
T ss_dssp             TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHHC-------SSEEEEEECGGG
T ss_pred             cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhccc-------CCcEEEEecccc
Confidence            367788999999644  1  1  11111  1225789999999876433333333333221       346789999997


Q ss_pred             CC
Q psy6566          93 KN   94 (126)
Q Consensus        93 ~~   94 (126)
                      ..
T Consensus       251 ~a  252 (433)
T 3kl4_A          251 TA  252 (433)
T ss_dssp             CS
T ss_pred             cc
Confidence            54

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=89.68  E-value=2.4  Score=26.26  Aligned_cols=79  Identities=13%  Similarity=0.099  Sum_probs=48.9

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCC-CCHH
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNS-MSPV   99 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~-~~~~   99 (126)
                      +...+.+.|+++...  ......+..+|.+++++... ..+...+...+..+.+.   ....+-++.|+.+.... ....
T Consensus       110 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~~~~~~~  183 (237)
T 1g3q_A          110 DKFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA---GLAILGFVLNRYGRSDRDIPPE  183 (237)
T ss_dssp             GGCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT---TCEEEEEEEEEETSCTTCCCHH
T ss_pred             hcCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCC-cccHHHHHHHHHHHHhC---CCceEEEEEecCCcccchhHHH
Confidence            345688999988644  33444678899999998754 45566665555444332   22456789999986432 2344


Q ss_pred             HHHhhc
Q psy6566         100 EISNLL  105 (126)
Q Consensus       100 ~v~~~~  105 (126)
                      ++.+.+
T Consensus       184 ~~~~~~  189 (237)
T 1g3q_A          184 AAEDVM  189 (237)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            454443

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=89.39  E-value=1.1  Score=28.36  Aligned_cols=68  Identities=7%  Similarity=0.018  Sum_probs=44.7

Q ss_pred             CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC-----CCCCCeEEEEEecCCC
Q psy6566          22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE-----DLSKAAVLIYANKQDI   92 (126)
Q Consensus        22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~piilv~nK~D~   92 (126)
                      ...+.++|+++....  .....+..+|.++++++. +..+...+...+..+....     .....++-++.|+.+.
T Consensus       113 ~yD~viiD~p~~~~~--~~~~~l~~ad~vi~v~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~  185 (260)
T 3q9l_A          113 DFEFIVCDSPAGIET--GALMALYFADEAIITTNP-EVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP  185 (260)
T ss_dssp             TCSEEEEECCSSSSH--HHHHHHHTCSEEEEEECS-SHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred             CCCEEEEcCCCCCCH--HHHHHHHhCCEEEEEecC-ChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence            677999999986443  444557789999999975 4556666665444443221     0022577899999874

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=88.93  E-value=1.6  Score=27.75  Aligned_cols=70  Identities=11%  Similarity=0.026  Sum_probs=42.3

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHH---HHHHHhCCCCCCCCeEE-EEEecCCCCC
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKE---ELYKMLNHEDLSKAAVL-IYANKQDIKN   94 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~pii-lv~nK~D~~~   94 (126)
                      +...+.+.|+++.....  ....+..+|.+++++.... .+...+..   .+..+.+. ..++.+++ ++.|+.|...
T Consensus       110 ~~yD~iiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~-~~~~~~~~gvv~N~~~~~~  183 (257)
T 1wcv_1          110 EGYDLVLLDAPPSLSPL--TLNALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRAG-LNPRLRLLGILVTMYDGRT  183 (257)
T ss_dssp             TTCSEEEEECCSSCCHH--HHHHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHHH-TCTTCEEEEEEEESBCTTC
T ss_pred             cCCCEEEEeCCCCCCHH--HHHHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHHH-hCCCceEEEEEEEeECCCc
Confidence            45678999999865432  2334566999999998653 34444433   23322111 11456764 8999998643

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=88.80  E-value=3.3  Score=27.04  Aligned_cols=67  Identities=6%  Similarity=-0.011  Sum_probs=41.9

Q ss_pred             EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566          23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        23 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~   94 (126)
                      ..+.|+|+|....... .....+.+|++++|+.... .+...+...+..+.+.   ....+-+|.|+.|...
T Consensus       202 yD~VIIDtpp~~~~~d-a~~l~~~aD~vllVv~~~~-~~~~~~~~~~~~l~~~---g~~~~GvVlN~v~~~~  268 (286)
T 3la6_A          202 YDLVLIDTPPILAVTD-AAIVGRHVGTTLMVARYAV-NTLKEVETSLSRFEQN---GIPVKGVILNSIFRRA  268 (286)
T ss_dssp             CSEEEEECCCTTTCTH-HHHHTTTCSEEEEEEETTT-SBHHHHHHHHHHHHHT---TCCCCEEEEEEECCCC
T ss_pred             CCEEEEcCCCCcchHH-HHHHHHHCCeEEEEEeCCC-CcHHHHHHHHHHHHhC---CCCEEEEEEcCccccc
Confidence            4588999997643321 2334677999999998653 4555555544444332   2234567889998654

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=88.68  E-value=0.76  Score=28.75  Aligned_cols=65  Identities=14%  Similarity=0.068  Sum_probs=41.8

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCC
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQD   91 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D   91 (126)
                      +...+.++|+++....  .....+..+|.+++++..+ ..++..+..... .+...  .-..+.++.|+.+
T Consensus       130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~-~~~~~--~~~~~~~v~N~~~  194 (254)
T 3kjh_A          130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPN-LNSIKTGLNIEK-LAGDL--GIKKVRYVINKVR  194 (254)
T ss_dssp             TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSS-HHHHHHHHHHHH-HHHHH--TCSCEEEEEEEEC
T ss_pred             CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCC-HHHHHHHHHHHH-HHHHc--CCccEEEEEeCCC
Confidence            4567899999875433  2333568899999999754 455555554333 32322  2245788999987

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=88.42  E-value=1.8  Score=30.18  Aligned_cols=66  Identities=15%  Similarity=0.099  Sum_probs=38.7

Q ss_pred             CCEEEEEEEcCCCcchH-HHHH-----hhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEecCCCC
Q psy6566          21 KNIHFIMWDLGGQQSLR-AAWS-----TYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLIYANKQDIK   93 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~-~~~~-----~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~   93 (126)
                      ++..+.+.||||..... ....     .....++.+++|+|+.........   ...+..     ..+ .-++.||.|..
T Consensus       182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~---~~~f~~-----~l~i~gvVlnK~D~~  253 (433)
T 2xxa_A          182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANT---AKAFNE-----ALPLTGVVLTKVDGD  253 (433)
T ss_dssp             TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHH---HHHHHH-----HSCCCCEEEECTTSS
T ss_pred             CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHH---HHHHhc-----cCCCeEEEEecCCCC
Confidence            46789999999975431 1111     124478999999998754322222   222211     233 34689999975


Q ss_pred             C
Q psy6566          94 N   94 (126)
Q Consensus        94 ~   94 (126)
                      .
T Consensus       254 ~  254 (433)
T 2xxa_A          254 A  254 (433)
T ss_dssp             S
T ss_pred             c
Confidence            4

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=87.76  E-value=1.4  Score=28.01  Aligned_cols=68  Identities=7%  Similarity=0.031  Sum_probs=42.8

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~   94 (126)
                      +...+.++|+++...  ......+..+|.+++++... ..+...+...+..+.+.   ...++-++.|+.+...
T Consensus       109 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~  176 (263)
T 1hyq_A          109 ESTDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERL---GTKVLGVVVNRITTLG  176 (263)
T ss_dssp             HTCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHH---TCEEEEEEEEEECTTT
T ss_pred             hhCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCC-hhHHHHHHHHHHHHHhc---CCCeeEEEEccCCccc
Confidence            346789999997644  23334566799999998753 44555555544433222   2245668999998543

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=87.69  E-value=2.2  Score=27.58  Aligned_cols=67  Identities=16%  Similarity=0.191  Sum_probs=40.6

Q ss_pred             CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEE-EEEecCCCCC
Q psy6566          22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVL-IYANKQDIKN   94 (126)
Q Consensus        22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~D~~~   94 (126)
                      ...+.|+|+|+...... .......+|++++|+... ..+...+......+ +.   .+.+++ +|.|+.|...
T Consensus       191 ~yD~VIIDtpp~~~~~d-~~~l~~~aD~vilVv~~~-~~~~~~~~~~~~~l-~~---~~~~~~GvVlN~~~~~~  258 (271)
T 3bfv_A          191 NYNFVIIDTPPVNTVTD-AQLFSKFTGNVVYVVNSE-NNNKDEVKKGKELI-EA---TGAKLLGVVLNRMPKDK  258 (271)
T ss_dssp             HCSEEEEECCCTTTCSH-HHHHHHHHCEEEEEEETT-SCCHHHHHHHHHHH-HT---TTCEEEEEEEEEECC--
T ss_pred             CCCEEEEeCCCCchHHH-HHHHHHHCCEEEEEEeCC-CCcHHHHHHHHHHH-Hh---CCCCEEEEEEeCCcCCC
Confidence            34688999997543211 122345689999999864 34556665544444 33   345655 8999998643

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=87.41  E-value=0.049  Score=37.07  Aligned_cols=65  Identities=5%  Similarity=0.032  Sum_probs=38.5

Q ss_pred             EEEEEcCCCcchHH--------HHHhhc--cCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566          25 FIMWDLGGQQSLRA--------AWSTYY--TNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        25 ~~i~Dt~G~~~~~~--------~~~~~~--~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~   94 (126)
                      +.++||||......        ....++  +..+.++|+++......+..+..  ...+..   .+.|++++.||.|...
T Consensus       214 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~--l~~l~~---~~~~~~~v~~k~d~~~  288 (369)
T 3ec1_A          214 ATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR--LDYIKG---GRRSFVCYMANELTVH  288 (369)
T ss_dssp             CEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE--EEEEES---SSEEEEEEECTTSCEE
T ss_pred             eEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE--EEEccC---CCceEEEEecCCcccc
Confidence            79999999643221        112222  67899999998743211111110  111222   4689999999999754

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=85.65  E-value=1.3  Score=32.28  Aligned_cols=71  Identities=13%  Similarity=0.163  Sum_probs=38.0

Q ss_pred             CCEEEEEEEcCCCc-------------chHHHHHhhccCCcEE-EEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEE
Q psy6566          21 KNIHFIMWDLGGQQ-------------SLRAAWSTYYTNTEFV-ILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIY   86 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~~-l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv   86 (126)
                      ..-.+.+.|.||..             ....+...++.....+ +.+...+..-.-..+......+ ..   .+.+.++|
T Consensus       145 ~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v-~~---~g~rtI~V  220 (608)
T 3szr_A          145 DVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEV-DP---EGDRTIGI  220 (608)
T ss_dssp             SSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHH-CS---SCCSEEEE
T ss_pred             CCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHH-hh---cCCceEEE
Confidence            34568999998632             2233455656555444 4444432211111223333333 22   46789999


Q ss_pred             EecCCCCCC
Q psy6566          87 ANKQDIKNS   95 (126)
Q Consensus        87 ~nK~D~~~~   95 (126)
                      .||.|+...
T Consensus       221 lTK~Dlv~~  229 (608)
T 3szr_A          221 LTKPDLVDK  229 (608)
T ss_dssp             EECGGGSSS
T ss_pred             ecchhhcCc
Confidence            999998754

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=80.46  E-value=9.3  Score=24.63  Aligned_cols=71  Identities=8%  Similarity=0.096  Sum_probs=41.6

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCC--CCCCCCe-EEEEEecCCCCC
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNH--EDLSKAA-VLIYANKQDIKN   94 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~p-iilv~nK~D~~~   94 (126)
                      +...+.+.|+|+........  .+..+|.+++++... ..+...+...+..+.+.  ....+.+ +-++.|+.|...
T Consensus       153 ~~yD~IiiD~pp~~~~~~~~--~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~  226 (298)
T 2oze_A          153 SDYDLIIIDTVPTPSVYTNN--AIVASDYVMIPLQAE-EESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS  226 (298)
T ss_dssp             GGCSEEEEEECSSCSHHHHH--HHHHCSEEEEEECGG-GCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC
T ss_pred             cCCCEEEEECCCCccHHHHH--HHHHCCeEEEEecCc-HHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc
Confidence            34578999999875543222  344599999998754 34455544433332210  0013566 458999998644

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=80.25  E-value=4.2  Score=25.79  Aligned_cols=71  Identities=7%  Similarity=0.073  Sum_probs=40.2

Q ss_pred             CCEEEEEEEcCCCcchHHH-HHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEecCCC
Q psy6566          21 KNIHFIMWDLGGQQSLRAA-WSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLIYANKQDI   92 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~-~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~   92 (126)
                      +...+.++|++|....... .......+|.+++++... ..+...+...+..+.+.....+.+ +-++.|+.+.
T Consensus       114 ~~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~  186 (269)
T 1cp2_A          114 DDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKV  186 (269)
T ss_dssp             TTCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSS
T ss_pred             cCCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCc-hhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCc
Confidence            3467999999986432211 112235799999998754 445555544333332211113455 4688999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	126
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-16
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	7e-16
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	6e-14
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-13
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-13
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	5e-12
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	3e-11
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	8e-11
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	2e-09
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	9e-09
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	1e-08
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	1e-08
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	2e-08
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	7e-08
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	1e-07
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	5e-07
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	8e-07
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	9e-07
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	1e-06
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-06
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	2e-06
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	3e-06
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	4e-06
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	6e-06
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	1e-04
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	3e-04
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	0.002

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 68.4 bits (166), Expect = 3e-16
 Identities = 54/125 (43%), Positives = 84/125 (67%)

Query: 2   NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER 61
            + V T PT+G NVE V +KN+ F +WD+GGQ  +R  W  YYT T+ +I V+D  DR+R
Sbjct: 35  GQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR 94

Query: 62  ISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC 121
           I   ++EL++++N  ++  A +LI+ANKQD+ ++M P EI   L LT I+ + W++Q  C
Sbjct: 95  IDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSC 154

Query: 122 ALTGE 126
           A +G+
Sbjct: 155 ATSGD 159

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 67.7 bits (164), Expect = 7e-16
 Identities = 59/125 (47%), Positives = 83/125 (66%)

Query: 2   NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER 61
            EVV T PTIG NVE + +KN+   +WDLGGQ S+R  W  YY +T  VI V+DSTD++R
Sbjct: 40  GEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDR 99

Query: 62  ISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC 121
           +S   +EL+ ML  E+L  AA+L++ANKQD   ++S  E+S  L+L  +K + W I +  
Sbjct: 100 MSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASS 159

Query: 122 ALTGE 126
           A+ GE
Sbjct: 160 AIKGE 164

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 62.7 bits (151), Expect = 6e-14
 Identities = 92/125 (73%), Positives = 109/125 (87%)

Query: 2   NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER 61
           NEVVHTSPTIGSNVEE++  N  F+MWD+GGQ+SLR++W+TYYTNTEFVI+V+DSTDRER
Sbjct: 38  NEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRER 97

Query: 62  ISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC 121
           IS+T+EELYKML HEDL KA +LI+ANKQD+K  M+  EIS  L LTSIK  QWHIQ+CC
Sbjct: 98  ISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACC 157

Query: 122 ALTGE 126
           ALTGE
Sbjct: 158 ALTGE 162

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 61.6 bits (148), Expect = 1e-13
 Identities = 59/125 (47%), Positives = 89/125 (71%)

Query: 2   NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER 61
            E+V T PTIG NVE V +KNI F +WD+GGQ  +R  W  Y+ NT+ +I V+DS DRER
Sbjct: 23  GEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER 82

Query: 62  ISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC 121
           ++  +EEL +ML  ++L  A +L++ANKQD+ N+M+  EI++ L L S++ + W+IQ+ C
Sbjct: 83  VNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATC 142

Query: 122 ALTGE 126
           A +G+
Sbjct: 143 ATSGD 147

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 61.1 bits (147), Expect = 2e-13
 Identities = 54/125 (43%), Positives = 80/125 (64%)

Query: 2   NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER 61
            ++ H +PT G N++ V  +     +WD+GGQ+ +R  W +Y+ NT+ +I VIDS DR+R
Sbjct: 39  EDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKR 98

Query: 62  ISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC 121
              T +EL ++L  E LS   VLI+ANKQD+  +    EI+  L+L +I+ + W IQSC 
Sbjct: 99  FEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCS 158

Query: 122 ALTGE 126
           ALTGE
Sbjct: 159 ALTGE 163

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.2 bits (140), Expect = 5e-12
 Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 10/111 (9%)

Query: 6   HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDST-------- 57
           H   T G    +     ++F M+D+GGQ+  R  W   + +   +I V+ S+        
Sbjct: 30  HVVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIRE 89

Query: 58  --DRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLD 106
                R+         + N+  L   +V+++ NKQD+         S + D
Sbjct: 90  DNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIED 140

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 55.4 bits (132), Expect = 3e-11
 Identities = 51/125 (40%), Positives = 79/125 (63%)

Query: 2   NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER 61
            +V   SPT+G N++ +  +     +WD+GGQ+SLR+ W  Y+ +T+ +I V+DS DR+R
Sbjct: 25  EDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQR 84

Query: 62  ISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC 121
           +   + EL  +L  E L+ A +LI+ANKQD+  ++S   I   L+L SI+   W IQ C 
Sbjct: 85  MQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCS 144

Query: 122 ALTGE 126
           A+TGE
Sbjct: 145 AVTGE 149

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.3 bits (129), Expect = 8e-11
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 7/132 (5%)

Query: 2   NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER 61
           + +    PT     EE+   NI F  +DLGG    R  W  Y+     ++ ++D+ D ER
Sbjct: 23  DRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPER 82

Query: 62  ISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQW------ 115
               + EL  + N  +L     +I  NK D  N++S  E+ + L L +    Q       
Sbjct: 83  FDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRP 142

Query: 116 -HIQSCCALTGE 126
             +  C  +   
Sbjct: 143 VEVFMCSVVMRN 154

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.8 bits (120), Expect = 2e-09
 Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 7/131 (5%)

Query: 2   NEVVHTSPTIGSNVEEVIWKN----IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDST 57
            +   T  +I  +       N       ++   G +         + ++   V+ V+DS 
Sbjct: 23  GQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSA 82

Query: 58  DRER-ISLTKEELYKMLNHEDLSKAA--VLIYANKQDIKNSMSPVEISNLLDLTSIKKQQ 114
             +R +    E LY++L      K +  +LI  NKQDI  + S   I   L+      + 
Sbjct: 83  AFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRV 142

Query: 115 WHIQSCCALTG 125
               +   L  
Sbjct: 143 TRSAAPSTLDS 153

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 48.9 bits (115), Expect = 9e-09
 Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 12/137 (8%)

Query: 2   NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER 61
           + +    PT+    EE+    + F  +DLGG    R  W  Y      ++ ++D  D ER
Sbjct: 36  DRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHER 95

Query: 62  ISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDL------------TS 109
           +  +KEEL  ++  E ++   +LI  NK D   ++S   +  +  L              
Sbjct: 96  LLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKE 155

Query: 110 IKKQQWHIQSCCALTGE 126
           +  +   +  C  L  +
Sbjct: 156 LNARPLEVFMCSVLKRQ 172

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.2 bits (114), Expect = 1e-08
 Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 9/125 (7%)

Query: 6   HTSPTIGSNVE----EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER 61
               TIG + +    ++  K +   +WD  GQ+  R   + YY     +ILV D TD   
Sbjct: 30  SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERT 89

Query: 62  ISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC 121
            +   ++ +K +N     +A +L+  NK D++  +   +          K+         
Sbjct: 90  FT-NIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGE----ALAKELGIPFIESS 144

Query: 122 ALTGE 126
           A   +
Sbjct: 145 AKNDD 149

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 1e-08
 Identities = 25/125 (20%), Positives = 40/125 (32%), Gaps = 4/125 (3%)

Query: 2   NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER 61
                           V        +WD  GQ+  R    +YY   + VILV D T R+ 
Sbjct: 35  ELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDT 94

Query: 62  ISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC 121
                  L ++  +   +    ++  NK D +N     E+     L   +K         
Sbjct: 95  FVKLDNWLNELETYCTRNDIVNMLVGNKIDKENR----EVDRNEGLKFARKHSMLFIEAS 150

Query: 122 ALTGE 126
           A T +
Sbjct: 151 AKTCD 155

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (114), Expect = 2e-08
 Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 8/125 (6%)

Query: 6   HTSPTIGSNVE----EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER 61
               TIG + +    E+  K +   +WD  GQ+  R   S+YY  +  +I+V D TD+E 
Sbjct: 34  DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQES 93

Query: 62  ISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC 121
            +  K  L ++  +   +   +L+          +   +++           +       
Sbjct: 94  FNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAK----EFADANKMPFLETS 149

Query: 122 ALTGE 126
           AL   
Sbjct: 150 ALDST 154

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.3 bits (109), Expect = 7e-08
 Identities = 20/127 (15%), Positives = 36/127 (28%), Gaps = 8/127 (6%)

Query: 4   VVHTSPTIGSNVE----EVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR 59
                 TIG + +    E+  K I   +WD  GQ+  R   + YY     ++LV D T+ 
Sbjct: 32  NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNE 91

Query: 60  ERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQS 119
           +     +  +  +  H       +++              E                   
Sbjct: 92  KSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGE----KLALDYGIKFME 147

Query: 120 CCALTGE 126
             A    
Sbjct: 148 TSAKANI 154

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.4 bits (109), Expect = 1e-07
 Identities = 22/102 (21%), Positives = 49/102 (48%), Gaps = 10/102 (9%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
           M  +    PT G +  +   KN+ F M D+GGQ+S R  W   + +   ++ ++ S++ +
Sbjct: 22  MRIIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFD 81

Query: 61  ----------RISLTKEELYKMLNHEDLSKAAVLIYANKQDI 92
                     R++ +      ++N+   S  +++++ NK D+
Sbjct: 82  QVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 123

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 5e-07
 Identities = 22/126 (17%), Positives = 42/126 (33%), Gaps = 4/126 (3%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
              +        + V +V    +   MWD  GQ+  R+    YY +   ++L+ D T++ 
Sbjct: 34  GTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKA 93

Query: 61  RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSC 120
                +  L ++  +     A +L+          +   E    L     K+        
Sbjct: 94  SFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKL----AKEYGLPFMET 149

Query: 121 CALTGE 126
            A TG 
Sbjct: 150 SAKTGL 155

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.8 bits (102), Expect = 8e-07
 Identities = 23/159 (14%), Positives = 54/159 (33%), Gaps = 33/159 (20%)

Query: 1   MNEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE 60
                   PT G        +++ F M D+GGQ+S R  W   + N   ++ ++  ++ +
Sbjct: 23  RIIHGSGVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYD 82

Query: 61  RISL----------TKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVE---------- 100
           ++ +          +K     ++ +     ++V+++ NK+D+                  
Sbjct: 83  QVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYD 142

Query: 101 -------------ISNLLDLTSIKKQQWHIQSCCALTGE 126
                        +   +DL     +  +    CA   E
Sbjct: 143 GPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTE 181

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 9e-07
 Identities = 31/121 (25%), Positives = 64/121 (52%)

Query: 6   HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLT 65
              PT+G N+ ++   N+   +WD+GGQ   R+ W  Y      ++ ++D+ D+E+I  +
Sbjct: 30  DMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEAS 89

Query: 66  KEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTG 125
           K EL+ +L+   L    VL+  NK+D+  ++   E+   ++L++I+ ++    S      
Sbjct: 90  KNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEK 149

Query: 126 E 126
           +
Sbjct: 150 D 150

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.9 bits (100), Expect = 1e-06
 Identities = 21/109 (19%), Positives = 35/109 (32%), Gaps = 4/109 (3%)

Query: 18  VIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED 77
              K I   +WD  GQ+  R   + YY      IL+ D T+ E  +   ++    +    
Sbjct: 49  RNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFN-AVQDWSTQIKTYS 107

Query: 78  LSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126
              A VL+  NK D+++                    +      A    
Sbjct: 108 WDNAQVLLVGNKCDMEDERVVSSERG---RQLADHLGFEFFEASAKDNI 153

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 1e-06
 Identities = 60/125 (48%), Positives = 85/125 (68%)

Query: 2   NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER 61
            EVV T PTIG NVE V +KN+ F +WDLGG  S+R  W  YY+NT+ VI V+DS DR+R
Sbjct: 28  GEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDR 87

Query: 62  ISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC 121
           I ++K EL  ML  E+L KA ++++ANKQD++ +M+  E++N L L ++K ++W I    
Sbjct: 88  IGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTS 147

Query: 122 ALTGE 126
           A  G 
Sbjct: 148 ATKGT 152

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 2e-06
 Identities = 18/113 (15%), Positives = 41/113 (36%), Gaps = 3/113 (2%)

Query: 14  NVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKML 73
           N        +H  +WD  GQ+  R+  + ++ +    +L+ D T ++     +  + ++ 
Sbjct: 55  NGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQ 114

Query: 74  NHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126
            +       +++  NK D+ +     E           K         A TG+
Sbjct: 115 ANAYCENPDIVLIGNKADLPDQREVNERQA---RELADKYGIPYFETSAATGQ 164

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 3e-06
 Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 4/125 (3%)

Query: 2   NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER 61
            +             E+  + +   +WD  GQ+  R+   +YY +   +IL  D T  E 
Sbjct: 33  GQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEES 92

Query: 62  ISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC 121
                E L ++  +       VL+       +      + +        + Q  +     
Sbjct: 93  FRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAE----EFSEAQDMYYLETS 148

Query: 122 ALTGE 126
           A   +
Sbjct: 149 AKESD 153

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 4e-06
 Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 4/125 (3%)

Query: 2   NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER 61
           +         GS +  V  K +   +WD  GQ+  R+   +YY      +LV D T RE 
Sbjct: 33  DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRET 92

Query: 62  ISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC 121
            +     L         +   +L    K    +       ++       ++ +       
Sbjct: 93  YNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRF----AQENELMFLETS 148

Query: 122 ALTGE 126
           ALTGE
Sbjct: 149 ALTGE 153

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.2 bits (95), Expect = 6e-06
 Identities = 18/107 (16%), Positives = 41/107 (38%), Gaps = 1/107 (0%)

Query: 20  WKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLS 79
              + F +WD  GQ+   +    YY N +  ++V D T  +     +  + ++ + +   
Sbjct: 49  EHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKEL-HEQASK 107

Query: 80  KAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126
              + +  NK D+       +++        +++        A TGE
Sbjct: 108 DIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGE 154

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.2 bits (85), Expect = 1e-04
 Identities = 18/98 (18%), Positives = 42/98 (42%), Gaps = 10/98 (10%)

Query: 7   TSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTK 66
                G       +K++HF M+D+GGQ+S R  W   +     +I  +  +D + +    
Sbjct: 26  HEAGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAED 85

Query: 67  ----------EELYKMLNHEDLSKAAVLIYANKQDIKN 94
                     +    + N++  +  +++++ NK+D+  
Sbjct: 86  EEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFE 123

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 3e-04
 Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 4/106 (3%)

Query: 21  KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK 80
           K I   +WD  GQ+  R   S YY      +LV D          +  L ++ +H D S 
Sbjct: 51  KTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SN 109

Query: 81  AAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126
             +++  NK D+++  +             +K         AL   
Sbjct: 110 IVIMLVGNKSDLRHLRAVPTD---EARAFAEKNNLSFIETSALDST 152

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (76), Expect = 0.002
 Identities = 16/109 (14%), Positives = 34/109 (31%), Gaps = 4/109 (3%)

Query: 18  VIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED 77
           +    + F +WD  GQ+   +    YY   +  I+V D T+ E  +  K  + ++     
Sbjct: 50  LDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS 109

Query: 78  LSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE 126
            +    L      +  +  +   +      +             A T  
Sbjct: 110 PNIVIALS----GNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSM 154

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	126
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.95
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.95
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.94
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.94
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.94
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.92
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.91
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.91
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.91
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.9
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.9
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.9
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.9
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.9
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.89
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.88
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.87
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.87
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.87
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.86
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.86
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.86
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.86
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.85
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.84
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.84
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.83
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.82
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.8
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.78
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.77
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.76
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.76
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.73
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.68
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.62
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.57
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.37
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.36
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.35
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.34
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.32
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.31
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.29
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.26
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.24
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.23
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.22
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.19
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.16
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.12
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.09
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.08
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.06
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.03
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.0
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	98.98
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	98.81
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	98.69
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	98.21
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.11
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.93
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.75
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	97.64
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	97.6
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.32
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.0
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	96.91
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	96.66
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	95.87
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	95.78
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	92.61
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	90.86
d1ls1a2	207	GTPase domain of the signal sequence recognition p	90.0
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	89.26
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	88.87
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	84.12

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.95  E-value=6.6e-27  Score=141.70  Aligned_cols=124  Identities=25%  Similarity=0.531  Sum_probs=112.5

Q ss_pred             CCc-ccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           3 EVV-HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         3 ~~~-~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      ++. .+.||+|+....+..+++.+.+||++|++.+...|..++..++++++|+|++++.++.....++..+++....+++
T Consensus        26 ~~~~~~~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (164)
T d1zd9a1          26 QFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGI  105 (164)
T ss_dssp             CCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTC
T ss_pred             CCCCcccccceeeeeeeeeeeEEEEEeeccccccccccccccccccchhhcccccccccccchhhhhhhhhhhhhcccCC
Confidence            444 6889999999999999999999999999999999999999999999999999999999999999999887766789


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+.+.....++.+.++...+..+.++++++||++|+
T Consensus       106 pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~  150 (164)
T d1zd9a1         106 PVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKD  150 (164)
T ss_dssp             CEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred             cEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCc
Confidence            999999999998777778888888877778889999999999874

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.95  E-value=5.6e-27  Score=144.14  Aligned_cols=125  Identities=47%  Similarity=0.806  Sum_probs=109.0

Q ss_pred             CCCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         2 ~~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      +++..+.||.+.....+..+++.+.+||++|++.++..+..+++.++++++|+|++++.++.+...|+...++.....+.
T Consensus        40 ~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~  119 (182)
T d1moza_          40 GEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDA  119 (182)
T ss_dssp             SEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSC
T ss_pred             CCCCccccccceEEEEEeeCCEEEEEEecccccccchhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCc
Confidence            34557789999999999999999999999999999999999999999999999999999999999999888887766789


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+....+.+++...++...+..+++++++|||++|+
T Consensus       120 piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~  164 (182)
T d1moza_         120 ALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGE  164 (182)
T ss_dssp             EEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTB
T ss_pred             ceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEEEEEECCCCC
Confidence            999999999998877778888888877777888999999999884

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.94  E-value=4.2e-26  Score=138.12  Aligned_cols=124  Identities=41%  Similarity=0.747  Sum_probs=109.9

Q ss_pred             CCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           3 EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         3 ~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      .+..+.||+|+....+..+++.+.+||++|++.++..+..+++.++++++++|+++..++.+...++...+......+.|
T Consensus        26 ~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p  105 (165)
T d1ksha_          26 DVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT  105 (165)
T ss_dssp             CCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE
T ss_pred             CCCcccceEeeeeeeccccccceeeeecCcchhhhhHHHhhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCc
Confidence            45678899999999999999999999999999999999999999999999999999999999999998888776667899


Q ss_pred             EEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          83 VLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +++++||+|+.+.....+....+.......+++++++|||++|+
T Consensus       106 ~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  149 (165)
T d1ksha_         106 LLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGE  149 (165)
T ss_dssp             EEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred             eEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEECCCCC
Confidence            99999999998877777777766666666778899999999984

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.94  E-value=3.7e-26  Score=139.43  Aligned_cols=125  Identities=43%  Similarity=0.844  Sum_probs=113.1

Q ss_pred             CCCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         2 ~~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      +++.++.||.++.........+.+.+||++|++.++..+..+++.++++++|+|+++.+++..+.+|+...++.....+.
T Consensus        35 ~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~  114 (173)
T d1e0sa_          35 GQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA  114 (173)
T ss_dssp             CCCEEEEEETTEEEEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTC
T ss_pred             CCCCCccceeeeeEEEeeccceeeEEecCCCcchhhhHHHhhhcccceEEEEEecccchhHHHHHHHHHHHhhhcccccc
Confidence            45667789999998888889999999999999999999999999999999999999999999999999998887666789


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+.+.....++...++...+..+++++++|||++|+
T Consensus       115 piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~  159 (173)
T d1e0sa_         115 IILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGD  159 (173)
T ss_dssp             EEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTB
T ss_pred             eeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCc
Confidence            999999999998877778888888877778889999999999984

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.94  E-value=4.4e-26  Score=139.29  Aligned_cols=125  Identities=43%  Similarity=0.779  Sum_probs=112.0

Q ss_pred             CCCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         2 ~~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      +++..+.||+|+....+..+++.+.+||++|++.++..+..+++.++++++++|++++.++.++..++..........++
T Consensus        39 ~~~~~~~~~~~~~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~  118 (176)
T d1fzqa_          39 EDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCV  118 (176)
T ss_dssp             SCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTC
T ss_pred             CCCCcceeeeeeeEEEeccCCeeEeEeeccccccchhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhccCCC
Confidence            45667889999999999999999999999999999999999999999999999999999999999999888777666789


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+........+.+.+....++.+.+++++|||++|+
T Consensus       119 pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  163 (176)
T d1fzqa_         119 PVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGE  163 (176)
T ss_dssp             CEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred             eEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence            999999999998877777777777777777788999999999985

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6.9e-27  Score=142.17  Aligned_cols=118  Identities=13%  Similarity=0.091  Sum_probs=79.4

Q ss_pred             CcccCCccCce-EEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCC
Q psy6566           4 VVHTSPTIGSN-VEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK   80 (126)
Q Consensus         4 ~~~~~pTi~~~-~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~   80 (126)
                      +..+.||.+.. .+.+.+  +.+.+.+||++|++.+..++..+++++|++++|||++++.+++.+..|+..+.......+
T Consensus        26 ~~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~  105 (168)
T d2gjsa1          26 DGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDD  105 (168)
T ss_dssp             --------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--C
T ss_pred             cCCcCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceeccccccccccccccccchhhccccccc
Confidence            34556676633 456667  447899999999999999999999999999999999999999999999888766544467


Q ss_pred             CeEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          81 AAVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        81 ~piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +|+++++||+|+....  +..+.     ..+++..+++|++|||++|.
T Consensus       106 ~piilvgnK~Dl~~~~~v~~~~~-----~~~~~~~~~~~~e~Sak~~~  148 (168)
T d2gjsa1         106 VPIILVGNKSDLVRSREVSVDEG-----RACAVVFDCKFIETSAALHH  148 (168)
T ss_dssp             CCEEEEEECTTCGGGCCSCHHHH-----HHHHHHHTSEEEECBTTTTB
T ss_pred             ceEEEeecccchhhhcchhHHHH-----HHHHHhcCCEEEEEeCCCCc
Confidence            8999999999987532  22222     22334456789999999873

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.7e-26  Score=139.18  Aligned_cols=117  Identities=20%  Similarity=0.316  Sum_probs=94.2

Q ss_pred             CCc-ccCCccCceEEEEEE----CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566           3 EVV-HTSPTIGSNVEEVIW----KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED   77 (126)
Q Consensus         3 ~~~-~~~pTi~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~   77 (126)
                      +|. .+.||+|.......+    +.+.+.+|||+|++.+..+++.++++++++++|+|++++++|+.+.+|+....+.. 
T Consensus        27 ~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-  105 (170)
T d1i2ma_          27 EFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-  105 (170)
T ss_dssp             ---CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHH-
T ss_pred             CCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhccccccccccchhHHHHHHHhhcc-
Confidence            344 788999977655555    56899999999999999999999999999999999999999999999998876643 


Q ss_pred             CCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          78 LSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                       +++|+++++||+|+.......     ....++...+++|++|||++|.
T Consensus       106 -~~~piilvgnK~Dl~~~~~~~-----~~~~~~~~~~~~~~e~Sak~~~  148 (170)
T d1i2ma_         106 -ENIPIVLCGNKVDIKDRKVKA-----KSIVFHRKKNLQYYDISAKSNY  148 (170)
T ss_dssp             -CSCCEEEEEECCCCSCSCCTT-----TSHHHHSSCSSEEEEEBTTTTB
T ss_pred             -CCCceeeecchhhhhhhhhhh-----HHHHHHHHcCCEEEEEeCCCCC
Confidence             589999999999997643221     1223445667899999999874

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=4.7e-26  Score=138.59  Aligned_cols=118  Identities=17%  Similarity=0.138  Sum_probs=94.0

Q ss_pred             CCc-ccCCccCc-eEEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566           3 EVV-HTSPTIGS-NVEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL   78 (126)
Q Consensus         3 ~~~-~~~pTi~~-~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~   78 (126)
                      ++. .+.||++. ....+.+  +.+.+.+||++|++.+..+++.++++++++++|||++++++|..+..|+..+.+....
T Consensus        28 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~  107 (169)
T d1x1ra1          28 IFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR  107 (169)
T ss_dssp             SCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS
T ss_pred             CCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEEecccccchhhhccchhhHHHHhhccc
Confidence            444 78899984 3455566  5578999999999999999999999999999999999999999999999888765444


Q ss_pred             CCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          79 SKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        79 ~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      .+.|+++++||+|+...  .+.++.     ..+++..+++|++||||+|
T Consensus       108 ~~~p~ilvgnK~Dl~~~~~v~~e~~-----~~~~~~~~~~~~e~Sak~~  151 (169)
T d1x1ra1         108 ESFPMILVANKVDLMHLRKVTRDQG-----KEMATKYNIPYIETSAKDP  151 (169)
T ss_dssp             SCCCEEEEEECTTCSTTCCSCHHHH-----HHHHHHHTCCEEEEBCSSS
T ss_pred             cCccEEEEecccchhhhceeehhhH-----HHHHHHcCCEEEEEcCCCC
Confidence            68999999999998764  233332     2333445678999999976

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.91  E-value=8e-26  Score=137.45  Aligned_cols=120  Identities=20%  Similarity=0.274  Sum_probs=92.3

Q ss_pred             CCCc-ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566           2 NEVV-HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED   77 (126)
Q Consensus         2 ~~~~-~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~   77 (126)
                      |+|. +|.||++... ..+.+  +.+.+.+||++|++.+..++..+++.++++++|+|++++++++.+..|+..+.+...
T Consensus        27 ~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~  106 (168)
T d1u8za_          27 DEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE  106 (168)
T ss_dssp             SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhC
Confidence            3454 7899999553 55566  447889999999999999999999999999999999999999999999888876544


Q ss_pred             CCCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          78 LSKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .+++|+++|+||+|+...  .+.++..     .+++..++++++|||++|.
T Consensus       107 ~~~~piiivgnK~Dl~~~~~v~~~~~~-----~~~~~~~~~~~e~Sak~g~  152 (168)
T d1u8za_         107 DENVPFLLVGNKSDLEDKRQVSVEEAK-----NRADQWNVNYVETSAKTRA  152 (168)
T ss_dssp             CTTSCEEEEEECGGGGGGCCSCHHHHH-----HHHHHHTCEEEECCTTTCT
T ss_pred             CCCCcEEEEeccccccccccccHHHHH-----HHHHHcCCeEEEEcCCCCc
Confidence            578999999999998653  2333322     2333456789999999984

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.6e-24  Score=132.59  Aligned_cols=124  Identities=15%  Similarity=0.296  Sum_probs=91.6

Q ss_pred             CCCc-ccCCccCce-EEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566           2 NEVV-HTSPTIGSN-VEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED   77 (126)
Q Consensus         2 ~~~~-~~~pTi~~~-~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~   77 (126)
                      |.|. .+.||++.. ...+.+  +.+.+.+||++|++.+..+++.++++++++++|||++++++|+++..||...++...
T Consensus        25 ~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~  104 (177)
T d1kmqa_          25 DQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC  104 (177)
T ss_dssp             SCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS
T ss_pred             CCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHhC
Confidence            3455 788999843 344555  557899999999999999999999999999999999999999999888877766543


Q ss_pred             CCCCeEEEEEecCCCCCCCCHHH-HH--------hhcCcCcccCC-ceEEEEeeeeeCC
Q psy6566          78 LSKAAVLIYANKQDIKNSMSPVE-IS--------NLLDLTSIKKQ-QWHIQSCCALTGE  126 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~~~~~~-v~--------~~~~~~~~~~~-~~~~~~~Sa~~~~  126 (126)
                       +++|+++++||+|+........ ..        ...+..+++.. ..+|++|||++|.
T Consensus       105 -~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt~~  162 (177)
T d1kmqa_         105 -PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD  162 (177)
T ss_dssp             -TTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCT
T ss_pred             -CCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCCCc
Confidence             6799999999999976321111 10        00111122222 3589999999884

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=5.2e-25  Score=133.88  Aligned_cols=118  Identities=20%  Similarity=0.289  Sum_probs=90.8

Q ss_pred             CCc-ccCCccCceEEE--EEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566           3 EVV-HTSPTIGSNVEE--VIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED   77 (126)
Q Consensus         3 ~~~-~~~pTi~~~~~~--~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~   77 (126)
                      ++. .+.||++.....  +..  ..+.+++|||||++.+..+++.++++|+++++|+|+++++++.....|+...... .
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~-~  107 (169)
T d3raba_          29 SFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTY-S  107 (169)
T ss_dssp             CCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH-C
T ss_pred             CCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcc-c
Confidence            444 678888866544  444  4478999999999999999999999999999999999999999998888766443 2


Q ss_pred             CCCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          78 LSKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .++.|+++++||+|+.+.  .+.++..     .+++..++++++|||++|.
T Consensus       108 ~~~~~iivv~nK~D~~~~~~v~~~~~~-----~~~~~~~~~~~e~Sak~g~  153 (169)
T d3raba_         108 WDNAQVLLVGNKCDMEDERVVSSERGR-----QLADHLGFEFFEASAKDNI  153 (169)
T ss_dssp             CSCCEEEEEEECTTCGGGCCSCHHHHH-----HHHHHHTCEEEECBTTTTB
T ss_pred             CCcceEEEEEeecccccccccchhhhH-----HHHHHcCCEEEEecCCCCc
Confidence            367899999999998763  2223322     2233446789999999874

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.5e-25  Score=135.95  Aligned_cols=119  Identities=19%  Similarity=0.172  Sum_probs=94.6

Q ss_pred             CCCc-ccCCccCce-EEEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566           2 NEVV-HTSPTIGSN-VEEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED   77 (126)
Q Consensus         2 ~~~~-~~~pTi~~~-~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~   77 (126)
                      |.|. .+.||++.. ...+.++  .+.+.+||++|.+.+..++..+++.++++++|||++++++++.+..|+..+.+...
T Consensus        27 ~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~  106 (167)
T d1xtqa1          27 GQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG  106 (167)
T ss_dssp             SCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhccc
Confidence            3445 788999965 4566664  46888999999999999999999999999999999999999999999988876544


Q ss_pred             CCCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          78 LSKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      ..++|+++++||+|+...  .+.++.     +.+++..+++|++|||++|
T Consensus       107 ~~~~piilvgnK~Dl~~~r~v~~~~~-----~~~a~~~~~~~~e~Sak~~  151 (167)
T d1xtqa1         107 KVQIPIMLVGNKKDLHMERVISYEEG-----KALAESWNAAFLESSAKEN  151 (167)
T ss_dssp             SSCCCEEEEEECTTCGGGCCSCHHHH-----HHHHHHHTCEEEECCTTCH
T ss_pred             ccccceeeeccccccccccchhHHHH-----HHHHHHcCCEEEEEecCCC
Confidence            468999999999998653  333332     2233445678999999987

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.7e-25  Score=135.95  Aligned_cols=119  Identities=20%  Similarity=0.200  Sum_probs=88.4

Q ss_pred             CCCc-ccCCccCceEEE-EEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566           2 NEVV-HTSPTIGSNVEE-VIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED   77 (126)
Q Consensus         2 ~~~~-~~~pTi~~~~~~-~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~   77 (126)
                      ++|. +|.||++..... +..  +.+.+.+||++|++.+. ....++++++++++|+|+++++++..+..|+........
T Consensus        25 ~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~  103 (168)
T d2atva1          25 KRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK  103 (168)
T ss_dssp             SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT
T ss_pred             CCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeecccCCccchhhhhhhccccccccc
Confidence            3454 889999976543 334  44789999999999885 456688999999999999999999999887655444333


Q ss_pred             CCCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          78 LSKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .++.|+++|+||+|+..+  .+.++.     ..+++..+++|++|||++|.
T Consensus       104 ~~~~piilvgnK~Dl~~~r~V~~~e~-----~~~a~~~~~~~~e~Saktg~  149 (168)
T d2atva1         104 PKNVTLILVGNKADLDHSRQVSTEEG-----EKLATELACAFYECSACTGE  149 (168)
T ss_dssp             TSCCCEEEEEECGGGGGGCCSCHHHH-----HHHHHHHTSEEEECCTTTCT
T ss_pred             ccCcceeeeccchhhhhhccCcHHHH-----HHHHHHhCCeEEEEccccCC
Confidence            468999999999998653  333332     22233446789999999873

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.2e-25  Score=134.46  Aligned_cols=118  Identities=21%  Similarity=0.287  Sum_probs=91.1

Q ss_pred             CCc-ccCCccCce--EEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566           3 EVV-HTSPTIGSN--VEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED   77 (126)
Q Consensus         3 ~~~-~~~pTi~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~   77 (126)
                      +|. .+.||++..  ...+.+  +.+.+.+|||+|++.+..+++.++++++++++|+|++++.++....+|+..+.+.. 
T Consensus        29 ~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-  107 (171)
T d2ew1a1          29 LFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-  107 (171)
T ss_dssp             SCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-
T ss_pred             CCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEeeecccchhhhhhhhhhhhhcccc-
Confidence            444 677777744  455666  44778999999999999999999999999999999999999999999888776543 


Q ss_pred             CCCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          78 LSKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ....|+++++||+|+...  ...++..     .+++..++++++|||++|.
T Consensus       108 ~~~~~~ilvgnK~D~~~~~~v~~~~~~-----~~~~~~~~~~~~~SAktg~  153 (171)
T d2ew1a1         108 SNKVITVLVGNKIDLAERREVSQQRAE-----EFSEAQDMYYLETSAKESD  153 (171)
T ss_dssp             CTTCEEEEEEECGGGGGGCSSCHHHHH-----HHHHHHTCCEEECCTTTCT
T ss_pred             cccccEEEEEeecccccccchhhhHHH-----HHHHhCCCEEEEEccCCCC
Confidence            257899999999998653  2222222     2233445689999999984

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2e-25  Score=137.60  Aligned_cols=124  Identities=16%  Similarity=0.195  Sum_probs=90.6

Q ss_pred             CCCc-ccCCccCce-EEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566           2 NEVV-HTSPTIGSN-VEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED   77 (126)
Q Consensus         2 ~~~~-~~~pTi~~~-~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~   77 (126)
                      |.|. ++.||++.. ...+..  ..+.+.+||++|++.+..++..+++.++++++|||++++++|++...|+...++.. 
T Consensus        32 ~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~-  110 (185)
T d2atxa1          32 DAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-  110 (185)
T ss_dssp             SSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-
T ss_pred             CCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhc-
Confidence            3444 788999843 444444  45789999999999999999999999999999999999999999888887777653 


Q ss_pred             CCCCeEEEEEecCCCCCCCCHHHH---------HhhcCcCcccC-CceEEEEeeeeeCC
Q psy6566          78 LSKAAVLIYANKQDIKNSMSPVEI---------SNLLDLTSIKK-QQWHIQSCCALTGE  126 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~~~~~~v---------~~~~~~~~~~~-~~~~~~~~Sa~~~~  126 (126)
                      .+++|+++|+||+|+.........         ....+..+++. ..++|++|||++|.
T Consensus       111 ~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~SAk~~~  169 (185)
T d2atxa1         111 APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQK  169 (185)
T ss_dssp             STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCT
T ss_pred             CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEecCCCCc
Confidence            368999999999998753111110         00011111112 23579999999884

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.8e-25  Score=136.07  Aligned_cols=120  Identities=15%  Similarity=0.137  Sum_probs=91.3

Q ss_pred             CCCc-ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC-
Q psy6566           2 NEVV-HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE-   76 (126)
Q Consensus         2 ~~~~-~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~-   76 (126)
                      +.|. +|.||++... ....+  +.+.+.+||++|++.+...+..+++.++++++|||++++++++.+..|+..+.+.. 
T Consensus        25 ~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~  104 (171)
T d2erxa1          25 GTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKG  104 (171)
T ss_dssp             CCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC
T ss_pred             CCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEEeecccccchhcccchhhhhhhhhc
Confidence            3444 7889999554 34445  34678899999999999999999999999999999999999999999987775532 


Q ss_pred             CCCCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          77 DLSKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ...++|+++|+||+|+...  .+.++..     .+++..++++++|||++|.
T Consensus       105 ~~~~~piilVgnK~Dl~~~~~v~~~e~~-----~~~~~~~~~~~e~Sak~~~  151 (171)
T d2erxa1         105 DVESIPIMLVGNKCDESPSREVQSSEAE-----ALARTWKCAFMETSAKLNH  151 (171)
T ss_dssp             ---CCCEEEEEECGGGGGGCCSCHHHHH-----HHHHHHTCEEEECBTTTTB
T ss_pred             cCCCCcEEEEeecccccccccccHHHHH-----HHHHHcCCeEEEEcCCCCc
Confidence            2367899999999998643  2323322     2334456789999999874

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=8.9e-26  Score=136.67  Aligned_cols=118  Identities=19%  Similarity=0.280  Sum_probs=92.8

Q ss_pred             CCCc-ccCCccCceEEEEEE----CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566           2 NEVV-HTSPTIGSNVEEVIW----KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE   76 (126)
Q Consensus         2 ~~~~-~~~pTi~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~   76 (126)
                      |++. ++.||++........    ..+.+.+|||+|++.+..+++.+++.++++++|+|++++++++++..|+..+.+..
T Consensus        25 ~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~  104 (164)
T d1z2aa1          25 GIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV  104 (164)
T ss_dssp             CCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH
T ss_pred             CCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEEEeccchhhhhhcccccccccccC
Confidence            3454 788999966554444    34789999999999999999999999999999999999999999999888876543


Q ss_pred             CCCCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          77 DLSKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                        +++|+++|+||+|+...  ...++.     ..+++..++++++|||++|.
T Consensus       105 --~~~~iilVgnK~Dl~~~~~v~~~~~-----~~~~~~~~~~~~e~Sak~g~  149 (164)
T d1z2aa1         105 --GDIPTALVQNKIDLLDDSCIKNEEA-----EGLAKRLKLRFYRTSVKEDL  149 (164)
T ss_dssp             --CSCCEEEEEECGGGGGGCSSCHHHH-----HHHHHHHTCEEEECBTTTTB
T ss_pred             --CCceEEEeeccCCcccceeeeehhh-----HHHHHHcCCEEEEeccCCCc
Confidence              57999999999998653  222332     22334456789999999873

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.6e-25  Score=134.31  Aligned_cols=121  Identities=17%  Similarity=0.176  Sum_probs=94.4

Q ss_pred             CCCc-ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566           2 NEVV-HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED   77 (126)
Q Consensus         2 ~~~~-~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~   77 (126)
                      |+|. +|.||++... ..+.+  +.+.+.+||++|++.+..+++.+++.++++++|+|++++++|+++..|+..+.+...
T Consensus        26 ~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~  105 (167)
T d1c1ya_          26 GIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD  105 (167)
T ss_dssp             CCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC
T ss_pred             CCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEEeeeccchhhhHhHHHHHHHHHHhcC
Confidence            4555 7889999444 34444  668899999999999999999999999999999999999999999999988876544


Q ss_pred             CCCCeEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          78 LSKAAVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .+++|+++++||+|+....  ..++.... .   ....++++++|||++|.
T Consensus       106 ~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~-~---~~~~~~~~~e~Sak~g~  152 (167)
T d1c1ya_         106 TEDVPMILVGNKCDLEDERVVGKEQGQNL-A---RQWCNCAFLESSAKSKI  152 (167)
T ss_dssp             CSCCCEEEEEECTTCGGGCCSCHHHHHHH-H---HHTTSCEEEECBTTTTB
T ss_pred             CCCCeEEEEEEecCcccccccchhHHHHH-H---HHhCCCEEEEEcCCCCc
Confidence            5789999999999997532  22222111 1   11246789999999884

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.4e-24  Score=131.18  Aligned_cols=118  Identities=19%  Similarity=0.275  Sum_probs=93.5

Q ss_pred             CCc-ccCCccCceEEEEEE----CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566           3 EVV-HTSPTIGSNVEEVIW----KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED   77 (126)
Q Consensus         3 ~~~-~~~pTi~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~   77 (126)
                      ++. .+.||++........    ..+.+.+||++|++.+...+..+++.++++++++|.+++.+++.+.+|+....+...
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~  103 (164)
T d1yzqa1          24 SFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG  103 (164)
T ss_dssp             CCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT
T ss_pred             CCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEeeccccccchhhhHhhHHHHHHhcC
Confidence            445 788999976655444    457899999999999999999999999999999999999999999999988765432


Q ss_pred             CCCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          78 LSKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                       .++|+++|+||+|+...  ...++.     ..+++..++++++|||++|+
T Consensus       104 -~~~~iilvgnK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~e~SAk~g~  148 (164)
T d1yzqa1         104 -SDVIIMLVGNKTDLADKRQVSIEEG-----ERKAKELNVMFIETSAKAGY  148 (164)
T ss_dssp             -TSSEEEEEEECTTCGGGCCSCHHHH-----HHHHHHTTCEEEECCTTTCT
T ss_pred             -CCceEEEEecccchhhhhhhhHHHH-----HHHHHHcCCEEEEecCCCCc
Confidence             67999999999998652  222222     12234456789999999984

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5.4e-25  Score=133.50  Aligned_cols=118  Identities=17%  Similarity=0.177  Sum_probs=92.4

Q ss_pred             CCc-ccCCccC-ceEEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566           3 EVV-HTSPTIG-SNVEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL   78 (126)
Q Consensus         3 ~~~-~~~pTi~-~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~   78 (126)
                      +|. ++.||++ .....+.+  ..+.+.+||++|++.+...+..+++.++++++|+|++++.++.++..|+..+......
T Consensus        27 ~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~  106 (167)
T d1kaoa_          27 TFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY  106 (167)
T ss_dssp             CCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT
T ss_pred             CCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhccC
Confidence            444 7889998 44455556  4478999999999999999999999999999999999999999999999887665445


Q ss_pred             CCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          79 SKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        79 ~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      +++|+++|+||+|+...  ...++.     ..+++..++++++|||++|
T Consensus       107 ~~~piilvgnK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~e~Sak~g  150 (167)
T d1kaoa_         107 EKVPVILVGNKVDLESEREVSSSEG-----RALAEEWGCPFMETSAKSK  150 (167)
T ss_dssp             SCCCEEEEEECGGGGGGCCSCHHHH-----HHHHHHHTSCEEEECTTCH
T ss_pred             CCCCEEEEEEccchhhcccchHHHH-----HHHHHHcCCeEEEECCCCC
Confidence            78999999999998653  222221     1222334567999999987

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.4e-24  Score=132.03  Aligned_cols=124  Identities=19%  Similarity=0.325  Sum_probs=94.9

Q ss_pred             CCCc-ccCCccCceE--EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566           2 NEVV-HTSPTIGSNV--EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE   76 (126)
Q Consensus         2 ~~~~-~~~pTi~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~   76 (126)
                      |+|. .+.||+|...  +.+..  +.+.+.+||++|++.+..+++.+++.++++++|||.+++.+++.+..|+....+..
T Consensus        26 ~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~  105 (170)
T d1ek0a_          26 NDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA  105 (170)
T ss_dssp             SCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEEEeCCcccchhhhhhhhhhhcccc
Confidence            4555 7889999654  45555  44789999999999999999999999999999999999999999999887665543


Q ss_pred             CCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          77 DLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      . ...|+++++||+|+........+.......+++..+++|++|||++|.
T Consensus       106 ~-~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~  154 (170)
T d1ek0a_         106 S-KDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGE  154 (170)
T ss_dssp             C-TTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred             c-cccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCc
Confidence            2 678999999999986432222222222233444567899999999884

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=2e-24  Score=130.96  Aligned_cols=119  Identities=22%  Similarity=0.279  Sum_probs=92.7

Q ss_pred             CCCc-ccCCccCceEEEEEE----CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566           2 NEVV-HTSPTIGSNVEEVIW----KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE   76 (126)
Q Consensus         2 ~~~~-~~~pTi~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~   76 (126)
                      ++|. ++.||++........    ....+.+||++|++.+..++..+++.++++++|+|++++++++.+..|+....+..
T Consensus        27 ~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~  106 (167)
T d1z0ja1          27 DSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHG  106 (167)
T ss_dssp             SCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEEEeeechhhhhhhHHHhhhhhhhcc
Confidence            3455 788999966644444    44678899999999999999999999999999999999999999999887765443


Q ss_pred             CCCCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          77 DLSKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                       ..+.|+++|+||+|+...  ...++.     +.+++..+++|++|||++|.
T Consensus       107 -~~~~~iilvgnK~Dl~~~~~v~~~~~-----~~~~~~~~~~~~e~SAk~~~  152 (167)
T d1z0ja1         107 -PPSIVVAIAGNKCDLTDVREVMERDA-----KDYADSIHAIFVETSAKNAI  152 (167)
T ss_dssp             -CTTSEEEEEEECTTCGGGCCSCHHHH-----HHHHHHTTCEEEECBTTTTB
T ss_pred             -CCcceEEEecccchhccccchhHHHH-----HHHHHHcCCEEEEEecCCCC
Confidence             368999999999999653  222222     22334456789999999874

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6.8e-25  Score=133.08  Aligned_cols=119  Identities=21%  Similarity=0.266  Sum_probs=86.4

Q ss_pred             CCCc-ccCCccCceEEEEEE----CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566           2 NEVV-HTSPTIGSNVEEVIW----KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE   76 (126)
Q Consensus         2 ~~~~-~~~pTi~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~   76 (126)
                      |.|. .+.||++.......+    ....+.+||++|++.+..+++.++++++++++|+|++++++|+.+..|+.......
T Consensus        26 ~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~  105 (167)
T d1z08a1          26 NKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML  105 (167)
T ss_dssp             CCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEEEEeCCchhHHHhhhhhhhhccccc
Confidence            3455 788999966555444    45889999999999999999999999999999999999999999999887664432


Q ss_pred             CCCCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          77 DLSKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                       ....|+++++||+|+...  .+.++..     .+++..++++++|||++|.
T Consensus       106 -~~~~~~ilvgnK~Dl~~~~~v~~~e~~-----~~a~~~~~~~~e~Sak~~~  151 (167)
T d1z08a1         106 -GNEICLCIVGNKIDLEKERHVSIQEAE-----SYAESVGAKHYHTSAKQNK  151 (167)
T ss_dssp             -GGGSEEEEEEECGGGGGGCCSCHHHHH-----HHHHHTTCEEEEEBTTTTB
T ss_pred             -ccccceeeeccccccccccccchHHHH-----HHHHHcCCeEEEEecCCCc
Confidence             257899999999998653  2333322     2334456789999999874

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.2e-25  Score=134.79  Aligned_cols=120  Identities=18%  Similarity=0.173  Sum_probs=93.6

Q ss_pred             CCCc-ccCCccC-ceEEEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566           2 NEVV-HTSPTIG-SNVEEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED   77 (126)
Q Consensus         2 ~~~~-~~~pTi~-~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~   77 (126)
                      |.|. ++.||.+ ...+.+.++  .+.+.+||++|++.+...+..+++.++++++|||++++.++..+..|+..+.+...
T Consensus        29 ~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~  108 (173)
T d2fn4a1          29 SYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD  108 (173)
T ss_dssp             SSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceeeeeecccccccccchhhhhhHHHHHHhc
Confidence            3445 6778876 445667674  47888999999999999999999999999999999999999999999888766544


Q ss_pred             CCCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          78 LSKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ..++|+++|+||+|+...  ...++.     ..+++..+++|++|||++|.
T Consensus       109 ~~~~p~ilvgnK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~e~Sak~g~  154 (173)
T d2fn4a1         109 RDDFPVVLVGNKADLESQRQVPRSEA-----SAFGASHHVAYFEASAKLRL  154 (173)
T ss_dssp             SSCCCEEEEEECGGGGGGCCSCHHHH-----HHHHHHTTCEEEECBTTTTB
T ss_pred             cCCCceEEEEEeechhhccccchhhh-----hHHHHhcCCEEEEEeCCCCc
Confidence            468999999999998653  222222     22333456789999999884

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.8e-24  Score=130.70  Aligned_cols=119  Identities=19%  Similarity=0.282  Sum_probs=93.7

Q ss_pred             CCCc-ccCCccCceEEEEEE----CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCC
Q psy6566           2 NEVV-HTSPTIGSNVEEVIW----KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHE   76 (126)
Q Consensus         2 ~~~~-~~~pTi~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~   76 (126)
                      |.+. .+.||.+.......+    ..+.+.+||++|++.+..+++.+++.++++++++|.+++++++....|+..+.+..
T Consensus        29 ~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~  108 (170)
T d1r2qa_          29 GQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA  108 (170)
T ss_dssp             SCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhcc
Confidence            3455 778999976655444    45789999999999999999999999999999999999999999999888776543


Q ss_pred             CCCCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          77 DLSKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                       .+++|+++++||+|+...  .+.++.     ..+++..+++|++|||++|.
T Consensus       109 -~~~~~iilvgnK~Dl~~~~~v~~e~~-----~~~~~~~~~~~~e~SAk~g~  154 (170)
T d1r2qa_         109 -SPNIVIALSGNKADLANKRAVDFQEA-----QSYADDNSLLFMETSAKTSM  154 (170)
T ss_dssp             -CTTCEEEEEEECGGGGGGCCSCHHHH-----HHHHHHTTCEEEECCTTTCT
T ss_pred             -CCCceEEeecccccccccccccHHHH-----HHHHHhcCCEEEEeeCCCCC
Confidence             368999999999998653  222222     22334456789999999884

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2e-24  Score=131.45  Aligned_cols=120  Identities=19%  Similarity=0.228  Sum_probs=91.9

Q ss_pred             CCCc-ccCCccC-ceEEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566           2 NEVV-HTSPTIG-SNVEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED   77 (126)
Q Consensus         2 ~~~~-~~~pTi~-~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~   77 (126)
                      |+|. ++.||.+ .....+.+  ..+.+.+||++|++.+...+..+++.++++++|+|.+++++++.+..|+..+++...
T Consensus        28 ~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~  107 (171)
T d2erya1          28 SYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKD  107 (171)
T ss_dssp             SCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT
T ss_pred             CCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEEeeccccccchhhHHHHhHHHHhhcc
Confidence            3444 7889998 55566666  446899999999999999999999999999999999999999999999988776554


Q ss_pred             CCCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          78 LSKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ....|+++++||+|+...  ...++..     .+++..+++|++|||++|.
T Consensus       108 ~~~~p~ilvgnK~Dl~~~~~v~~~~~~-----~~~~~~~~~~~e~Sak~~~  153 (171)
T d2erya1         108 RDEFPMILIGNKADLDHQRQVTQEEGQ-----QLARQLKVTYMEASAKIRM  153 (171)
T ss_dssp             SSCCSEEEEEECTTCTTSCSSCHHHHH-----HHHHHTTCEEEECBTTTTB
T ss_pred             cCCCCEEEEEeccchhhhccchHHHHH-----HHHHHcCCEEEEEcCCCCc
Confidence            468899999999998754  2333322     2334556789999999873

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=4e-24  Score=132.54  Aligned_cols=118  Identities=25%  Similarity=0.303  Sum_probs=91.5

Q ss_pred             CCc-ccCCccCceEE--EEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566           3 EVV-HTSPTIGSNVE--EVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED   77 (126)
Q Consensus         3 ~~~-~~~pTi~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~   77 (126)
                      .+. .+.||++....  .+.+  ..+.+.+|||+|++++..+|..+++.|+++++|+|.++++++.....++..+.+.. 
T Consensus        30 ~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~-  108 (194)
T d2bcgy1          30 TYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-  108 (194)
T ss_dssp             CCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-
T ss_pred             CCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcc-
Confidence            344 78899996554  4555  45789999999999999999999999999999999999999999998887775433 


Q ss_pred             CCCCeEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          78 LSKAAVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ..+.|+++++||+|+....  ..++..     ......++.+++|||++|.
T Consensus       109 ~~~~~iilv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~e~SAk~g~  154 (194)
T d2bcgy1         109 TSTVLKLLVGNKCDLKDKRVVEYDVAK-----EFADANKMPFLETSALDST  154 (194)
T ss_dssp             CTTCEEEEEEECTTCTTTCCSCHHHHH-----HHHHHTTCCEEECCTTTCT
T ss_pred             cCCceEEEEEeccccccccchhHHHHh-----hhhhccCcceEEEecCcCc
Confidence            3789999999999997632  222221     1123345679999999874

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.8e-24  Score=128.82  Aligned_cols=118  Identities=22%  Similarity=0.316  Sum_probs=90.1

Q ss_pred             CCc-ccCCccCce--EEEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566           3 EVV-HTSPTIGSN--VEEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED   77 (126)
Q Consensus         3 ~~~-~~~pTi~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~   77 (126)
                      ++. ++.||++..  ...+.++  .+.+.+||++|++.+..++..+++.++++++|+|++++++++.+..|+..+.+.. 
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~-  106 (166)
T d1z0fa1          28 KFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-  106 (166)
T ss_dssp             CCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-
T ss_pred             CCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhc-
Confidence            344 566777744  4455554  4689999999999999999999999999999999999999999999887775433 


Q ss_pred             CCCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          78 LSKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ....|+++++||+|+...  ...++..     ..++..++++++|||++|.
T Consensus       107 ~~~~~iilvgnK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~e~Saktg~  152 (166)
T d1z0fa1         107 NPNTVIILIGNKADLEAQRDVTYEEAK-----QFAEENGLLFLEASAKTGE  152 (166)
T ss_dssp             CTTCEEEEEEECTTCGGGCCSCHHHHH-----HHHHHTTCEEEECCTTTCT
T ss_pred             cccceEEEEcccccchhhcccHHHHHH-----HHHHHcCCEEEEEeCCCCC
Confidence            367899999999998653  2222222     2233456789999999984

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.3e-24  Score=131.99  Aligned_cols=99  Identities=16%  Similarity=0.312  Sum_probs=81.4

Q ss_pred             EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCC--CCHHH
Q psy6566          23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNS--MSPVE  100 (126)
Q Consensus        23 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~  100 (126)
                      +.+.+|||+|++.++.+++.++++++++++|||++++.+++.+..|+..+.........|+++++||+|+...  ...++
T Consensus        64 ~~~~i~dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e  143 (186)
T d2f7sa1          64 VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQ  143 (186)
T ss_dssp             EEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHH
T ss_pred             EEeccccCCcchhhHHHHHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHH
Confidence            6799999999999999999999999999999999999999999998887766655577899999999999653  22222


Q ss_pred             HHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566         101 ISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus       101 v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .     ..+++..++++++|||++|+
T Consensus       144 ~-----~~~~~~~~~~~~e~Sak~~~  164 (186)
T d2f7sa1         144 A-----RELADKYGIPYFETSAATGQ  164 (186)
T ss_dssp             H-----HHHHHHTTCCEEEEBTTTTB
T ss_pred             H-----HHHHHHcCCEEEEEeCCCCC
Confidence            2     22334456789999999874

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=7.5e-24  Score=129.16  Aligned_cols=118  Identities=25%  Similarity=0.364  Sum_probs=91.9

Q ss_pred             CCc-ccCCccCceEEEEEE----CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566           3 EVV-HTSPTIGSNVEEVIW----KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED   77 (126)
Q Consensus         3 ~~~-~~~pTi~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~   77 (126)
                      ++. .+.||.+.......+    ....+.+|||+|++++..+++.+++.++++++|+|.++++++..+..|+..+.+...
T Consensus        29 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~  108 (174)
T d2bmea1          29 KFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS  108 (174)
T ss_dssp             SCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC
T ss_pred             CCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEEEecccchhHHHHhhhhcccccccC
Confidence            444 678888866554444    456899999999999999999999999999999999999999999998888765433


Q ss_pred             CCCCeEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          78 LSKAAVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                       .++|+++++||+|+....  ......     .+++..++++++|||++|.
T Consensus       109 -~~~piivv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~e~Sak~~~  153 (174)
T d2bmea1         109 -QNIVIILCGNKKDLDADREVTFLEAS-----RFAQENELMFLETSALTGE  153 (174)
T ss_dssp             -TTCEEEEEEECGGGGGGCCSCHHHHH-----HHHHHTTCEEEECCTTTCT
T ss_pred             -CceEEEEEEecccccchhchhhhHHH-----HHHHhCCCEEEEeeCCCCc
Confidence             689999999999986532  122211     2233456789999999874

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.6e-23  Score=129.52  Aligned_cols=124  Identities=19%  Similarity=0.269  Sum_probs=91.1

Q ss_pred             CCCc-ccCCccCceE-EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566           2 NEVV-HTSPTIGSNV-EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED   77 (126)
Q Consensus         2 ~~~~-~~~pTi~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~   77 (126)
                      |.|. ++.||++... ....+  +...+.+||++|++++..++..+++.++++++|||++++++|+++..||...+....
T Consensus        26 ~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~  105 (191)
T d2ngra_          26 NKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC  105 (191)
T ss_dssp             SCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC
T ss_pred             CCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecccccchHHHHHHHHHHHHHHHhhcC
Confidence            3444 8899999554 44444  446899999999999999999999999999999999999999999888777665432


Q ss_pred             CCCCeEEEEEecCCCCCCCCHHH---------HHhhcCcCcccC-CceEEEEeeeeeCC
Q psy6566          78 LSKAAVLIYANKQDIKNSMSPVE---------ISNLLDLTSIKK-QQWHIQSCCALTGE  126 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~~~~~~---------v~~~~~~~~~~~-~~~~~~~~Sa~~~~  126 (126)
                       .++|+++++||+|+.......+         +....+..+++. ...+|++|||++|.
T Consensus       106 -~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~  163 (191)
T d2ngra_         106 -PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQK  163 (191)
T ss_dssp             -TTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTTCT
T ss_pred             -CCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCCCCc
Confidence             6799999999999865311000         011111112222 34679999999874

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.7e-23  Score=127.67  Aligned_cols=124  Identities=17%  Similarity=0.294  Sum_probs=90.7

Q ss_pred             CCCc-ccCCccCce-EEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566           2 NEVV-HTSPTIGSN-VEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED   77 (126)
Q Consensus         2 ~~~~-~~~pTi~~~-~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~   77 (126)
                      ++|. .+.||++.. ...+..  +...+.+||++|++.+..++..+++.++++++|||++++++|+++..||...++...
T Consensus        28 ~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~  107 (183)
T d1mh1a_          28 NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC  107 (183)
T ss_dssp             SSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS
T ss_pred             CCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHhC
Confidence            3444 789999944 345555  557889999999999999999999999999999999999999999887777666433


Q ss_pred             CCCCeEEEEEecCCCCCCCCH-HHHHhhcC--------cCcc-cCCceEEEEeeeeeCC
Q psy6566          78 LSKAAVLIYANKQDIKNSMSP-VEISNLLD--------LTSI-KKQQWHIQSCCALTGE  126 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~~~~-~~v~~~~~--------~~~~-~~~~~~~~~~Sa~~~~  126 (126)
                       .++|+++|+||+|+...... ........        ..++ +...++|++|||++|.
T Consensus       108 -~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SAk~~~  165 (183)
T d1mh1a_         108 -PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR  165 (183)
T ss_dssp             -TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCT
T ss_pred             -CCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCCCCCc
Confidence             67999999999998653111 11111110        1111 1233689999999884

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=7.5e-23  Score=125.34  Aligned_cols=123  Identities=16%  Similarity=0.244  Sum_probs=90.4

Q ss_pred             CCCc-ccCCccC-ceEEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566           2 NEVV-HTSPTIG-SNVEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED   77 (126)
Q Consensus         2 ~~~~-~~~pTi~-~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~   77 (126)
                      |.|. +|.||++ .....+.+  +.+.+.+||++|++.+...++.++++++++++|||+++++||+.+..||...+....
T Consensus        25 ~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~  104 (179)
T d1m7ba_          25 DCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC  104 (179)
T ss_dssp             SCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC
T ss_pred             CCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheeeecccCCCHHHHHHHHHHHHhccC
Confidence            4455 7899998 44555666  557899999999999999999999999999999999999999999888877765433


Q ss_pred             CCCCeEEEEEecCCCCCCCCHH-H--------HHhhcCcCcccC-CceEEEEeeeeeC
Q psy6566          78 LSKAAVLIYANKQDIKNSMSPV-E--------ISNLLDLTSIKK-QQWHIQSCCALTG  125 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~~~~~-~--------v~~~~~~~~~~~-~~~~~~~~Sa~~~  125 (126)
                       +++|+++||||+|+....... .        +.......+++. ...+|+||||++|
T Consensus       105 -~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~~  161 (179)
T d1m7ba_         105 -PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQS  161 (179)
T ss_dssp             -TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTB
T ss_pred             -CcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCCC
Confidence             689999999999986421100 0        000011112222 2347999999987

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.6e-23  Score=126.34  Aligned_cols=115  Identities=19%  Similarity=0.320  Sum_probs=81.7

Q ss_pred             ccCCccCceEEEEEE--CC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNVEEVIW--KN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~~~~~~--~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++.......+  ++  +.+.+|||||++.+..++..++++++++++|+|.++++++..+..|+....+... ...
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~  113 (170)
T d2g6ba1          35 TFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDV  113 (170)
T ss_dssp             CCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTC
T ss_pred             cccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccC-CCc
Confidence            456778866655444  33  6889999999999999999999999999999999999999999998887765432 578


Q ss_pred             eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+...  ...++..     .+++..++++++|||++|.
T Consensus       114 ~iilv~~k~d~~~~~~v~~~~~~-----~~~~~~~~~~~e~Sak~g~  155 (170)
T d2g6ba1         114 ALMLLGNKVDSAHERVVKREDGE-----KLAKEYGLPFMETSAKTGL  155 (170)
T ss_dssp             EEEEEEECCSTTSCCCSCHHHHH-----HHHHHHTCCEEECCTTTCT
T ss_pred             eEEEEEeeechhhcccccHHHHH-----HHHHHcCCEEEEEeCCCCc
Confidence            99999999998764  2222222     2223445789999999884

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=4e-23  Score=124.81  Aligned_cols=119  Identities=19%  Similarity=0.257  Sum_probs=91.0

Q ss_pred             CCCc-ccCCccCceE--EEEEE--CCEEEEEEEcCCCcchHH-HHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCC
Q psy6566           2 NEVV-HTSPTIGSNV--EEVIW--KNIHFIMWDLGGQQSLRA-AWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNH   75 (126)
Q Consensus         2 ~~~~-~~~pTi~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~-~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~   75 (126)
                      |++. .+.||++...  ....+  ....+.+||++|.+.+.. .++.++++++++++|||++++++++.+..|+..+.+.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~  104 (165)
T d1z06a1          25 GRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQH  104 (165)
T ss_dssp             SSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred             CCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEEEEEeehhhhhhhhhhhhHHHHhh
Confidence            3445 6778888444  44444  557899999999888765 5788999999999999999999999999999888765


Q ss_pred             CCCCCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          76 EDLSKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        76 ~~~~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      ...+++|+++++||+|+.+.  .+.++..     .+++..++++++||||+|
T Consensus       105 ~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~-----~~~~~~~~~~~e~SAkt~  151 (165)
T d1z06a1         105 LLANDIPRILVGNKCDLRSAIQVPTDLAQ-----KFADTHSMPLFETSAKNP  151 (165)
T ss_dssp             CCCSCCCEEEEEECTTCGGGCCSCHHHHH-----HHHHHTTCCEEECCSSSG
T ss_pred             ccCCCCeEEEEeccccchhccchhHHHHH-----HHHHHCCCEEEEEecccC
Confidence            44578999999999998653  3333322     233445678999999975

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.7e-23  Score=127.55  Aligned_cols=115  Identities=18%  Similarity=0.273  Sum_probs=76.2

Q ss_pred             ccCCccCce--EEEEEEC--CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSN--VEEVIWK--NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.||++..  ...+.++  .+.+.+|||+|++.+..++..++++++++++|+|++++.++..+..|+..+.... ..+.
T Consensus        34 ~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~  112 (173)
T d2fu5c1          34 TFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHA-SADV  112 (173)
T ss_dssp             CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTC
T ss_pred             ccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhc-cCCc
Confidence            667888844  4556664  4678899999999999999999999999999999999999999998887775433 3679


Q ss_pred             eEEEEEecCCCCCCCC--HHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMS--PVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+.....  .++..     ..+...++++++|||++|+
T Consensus       113 ~iilv~~k~D~~~~~~~~~~~~~-----~~~~~~~~~~~e~Sa~~g~  154 (173)
T d2fu5c1         113 EKMILGNKCDVNDKRQVSKERGE-----KLALDYGIKFMETSAKANI  154 (173)
T ss_dssp             EEEEEEEC--CCSCCCSCHHHHH-----HHHHHHTCEEEECCC---C
T ss_pred             eEEEEEecccchhhcccHHHHHH-----HHHHhcCCEEEEEeCCCCC
Confidence            9999999999876422  22221     1223446789999999874

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4.7e-23  Score=124.76  Aligned_cols=119  Identities=15%  Similarity=0.162  Sum_probs=92.6

Q ss_pred             CCc-ccCCccCceEEE-EEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566           3 EVV-HTSPTIGSNVEE-VIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL   78 (126)
Q Consensus         3 ~~~-~~~pTi~~~~~~-~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~   78 (126)
                      .+. .+.||++..... +..  +.+.+.+||++|++.+...++.+++.++++++|+|++++.+++.+..|+..+.+....
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~  106 (166)
T d1ctqa_          27 HFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS  106 (166)
T ss_dssp             CCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTC
T ss_pred             CCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhcccccceeecccccccHHHHHHHHHHHHHhcCC
Confidence            344 678999955433 333  5578999999999999999999999999999999999999999999988877665444


Q ss_pred             CCCeEEEEEecCCCCCCC-CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          79 SKAAVLIYANKQDIKNSM-SPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        79 ~~~piilv~nK~D~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .++|+++++||+|+.... ..++..     .+++..++++++|||++|+
T Consensus       107 ~~~piilv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~~e~Sak~g~  150 (166)
T d1ctqa_         107 DDVPMVLVGNKCDLAARTVESRQAQ-----DLARSYGIPYIETSAKTRQ  150 (166)
T ss_dssp             SSCCEEEEEECTTCSCCCSCHHHHH-----HHHHHHTCCEEECCTTTCT
T ss_pred             CCCeEEEEecccccccccccHHHHH-----HHHHHhCCeEEEEcCCCCc
Confidence            679999999999987532 222222     2223445689999999984

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.86  E-value=1.8e-20  Score=112.05  Aligned_cols=124  Identities=48%  Similarity=0.882  Sum_probs=107.2

Q ss_pred             CCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           3 EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         3 ~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      ++....++............+.+.+||++|.+.+...+..+++.++++++++|..++.++..+..++.+.+........|
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (160)
T d1r8sa_          24 EIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV  103 (160)
T ss_dssp             CSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE
T ss_pred             CCCccccceeeEEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCce
Confidence            44445555566666677799999999999999999999999999999999999999999999999999998877667899


Q ss_pred             EEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          83 VLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +++++||+|+.......++........++..++++++|||++|+
T Consensus       104 i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~  147 (160)
T d1r8sa_         104 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGD  147 (160)
T ss_dssp             EEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTB
T ss_pred             EEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCC
Confidence            99999999998877777787777777777788999999999984

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=6.4e-23  Score=125.15  Aligned_cols=115  Identities=23%  Similarity=0.338  Sum_probs=87.0

Q ss_pred             ccCCccCce--EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSN--VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.|+.+..  ...+.+++  +.+.+||++|++.+...+..+++.++++++|+|.++++++....+|+..+.+... +++
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~-~~~  110 (175)
T d2f9la1          32 ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNI  110 (175)
T ss_dssp             ---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTC
T ss_pred             cccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcC-CCC
Confidence            677788744  45555544  6899999999999999999999999999999999999999999999888765433 679


Q ss_pred             eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++|+||+|+.+.  ...+....     .......++++|||++|+
T Consensus       111 piilvgnK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~e~Sa~~g~  152 (175)
T d2f9la1         111 VIMLVGNKSDLRHLRAVPTDEARA-----FAEKNNLSFIETSALDST  152 (175)
T ss_dssp             EEEEEEECTTCGGGCCSCHHHHHH-----HHHHTTCEEEECCTTTCT
T ss_pred             cEEEEEeeecccccccchHHHHHH-----hhcccCceEEEEecCCCc
Confidence            99999999998753  22122111     122345689999999884

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=5.5e-23  Score=125.20  Aligned_cols=114  Identities=13%  Similarity=0.167  Sum_probs=83.2

Q ss_pred             ccCCccCce--EEEEEE--CCEEEEEEEcC---CCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCC
Q psy6566           6 HTSPTIGSN--VEEVIW--KNIHFIMWDLG---GQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDL   78 (126)
Q Consensus         6 ~~~pTi~~~--~~~~~~--~~~~~~i~Dt~---G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~   78 (126)
                      .+.||++..  .+.+.+  +...+.+||++   |++++  ++..+++.++++++|||++++.+++.+.+|+..+.+....
T Consensus        32 ~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~  109 (172)
T d2g3ya1          32 SDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT  109 (172)
T ss_dssp             CC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGG
T ss_pred             ccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccceeeeeecccccchhhhhhhhhhhhhhcccc
Confidence            455777744  455556  44667889865   45544  6778899999999999999999999999999888776555


Q ss_pred             CCCeEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          79 SKAAVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        79 ~~~piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +++|+++++||+|+...  .+.++.     ..++...+++|++|||++|.
T Consensus       110 ~~~piilvgnK~Dl~~~~~v~~~~~-----~~~a~~~~~~~~e~Sak~g~  154 (172)
T d2g3ya1         110 EDIPIILVGNKSDLVRCREVSVSEG-----RACAVVFDCKFIETSAAVQH  154 (172)
T ss_dssp             TTSCEEEEEECTTCGGGCCSCHHHH-----HHHHHHHTCEEEECBTTTTB
T ss_pred             CCceEEEEeccccccccccccHHHH-----HHHHHHcCCeEEEEeCCCCc
Confidence            78999999999998653  333332     22233456789999999873

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.9e-22  Score=121.82  Aligned_cols=116  Identities=23%  Similarity=0.296  Sum_probs=91.8

Q ss_pred             ccCCccCc--eEEEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGS--NVEEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~--~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      ++.|+.+.  ....+.+  ....+.+|||+|++.+..+++.+++.++++++|+|++++.+++.+..|+.++.+.......
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~  114 (177)
T d1x3sa1          35 ELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDI  114 (177)
T ss_dssp             TCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCC
T ss_pred             ccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCccccccchhhhhhhcccccccce
Confidence            66677774  4455666  4467999999999999999999999999999999999999999999999988776555678


Q ss_pred             eEEEEEecCCCCC-CCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKN-SMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||.|... .....+..     .+++..++++++|||++|+
T Consensus       115 ~i~~~~nk~d~~~~~v~~~~~~-----~~~~~~~~~~~e~Sa~tg~  155 (177)
T d1x3sa1         115 VNMLVGNKIDKENREVDRNEGL-----KFARKHSMLFIEASAKTCD  155 (177)
T ss_dssp             EEEEEEECTTSSSCCSCHHHHH-----HHHHHTTCEEEECCTTTCT
T ss_pred             eeEEEeeccccccccccHHHHH-----HHHHHCCCEEEEEeCCCCC
Confidence            9999999999765 22222222     2334456789999999984

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=5.1e-23  Score=125.39  Aligned_cols=115  Identities=25%  Similarity=0.320  Sum_probs=85.5

Q ss_pred             ccCCccCceE--EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           6 HTSPTIGSNV--EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         6 ~~~pTi~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .+.|+.+...  .....  +...+.+||++|++.+..+++.+++.+|++++|+|++++.+++.+.+|+..+.+.. ..++
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~-~~~~  109 (173)
T d2a5ja1          31 VHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-SSNM  109 (173)
T ss_dssp             -----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTC
T ss_pred             CcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhC-CCCC
Confidence            5667777444  33444  45789999999999999999999999999999999999999999999998876543 2689


Q ss_pred             eEEEEEecCCCCCC--CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNS--MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+...  ...++..     .+++..++++++|||++|.
T Consensus       110 piilv~nK~D~~~~~~~~~~~~~-----~~a~~~~~~~~e~Sa~tg~  151 (173)
T d2a5ja1         110 VIMLIGNKSDLESRRDVKREEGE-----AFAREHGLIFMETSAKTAC  151 (173)
T ss_dssp             EEEEEEECTTCGGGCCSCHHHHH-----HHHHHHTCEEEEECTTTCT
T ss_pred             eEEEEecCCchhhhhhhHHHHHH-----HHHHHcCCEEEEecCCCCC
Confidence            99999999998652  2222221     2223445689999999984

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=4.3e-21  Score=117.06  Aligned_cols=119  Identities=12%  Similarity=0.110  Sum_probs=84.0

Q ss_pred             CCCcccCCccCce-EEEEEECC--EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHh--CCC
Q psy6566           2 NEVVHTSPTIGSN-VEEVIWKN--IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKML--NHE   76 (126)
Q Consensus         2 ~~~~~~~pTi~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~--~~~   76 (126)
                      +++..+.||.+.. .+.+.+++  +.+.+|||+|++.+.     +++.+|++++|||++++++|+.+..|+..+.  +..
T Consensus        28 ~~f~~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~~-----~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~  102 (175)
T d2bmja1          28 GSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGE  102 (175)
T ss_dssp             SCCCCCCCSSCEEEEEEEEETTEEEEEEEEECSSCCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC-
T ss_pred             CCCCCcCCccceeEEEEeecCceEEEEEEeecccccccc-----cccccceeEEEeecccchhhhhhHHHHHHHHHHhhc
Confidence            4566777887743 45677744  779999999998764     7888999999999999999999988877653  333


Q ss_pred             CCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCc-ccCCceEEEEeeeeeCC
Q psy6566          77 DLSKAAVLIYANKQDIKNSMSPVEISNLLDLTS-IKKQQWHIQSCCALTGE  126 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~Sa~~~~  126 (126)
                      ...++|+++|+||.|+..... ..+.......+ .....++|++|||++|.
T Consensus       103 ~~~~~pi~lV~~k~d~d~~~~-~~v~~~~~~~~~~~~~~~~~~e~SAk~~~  152 (175)
T d2bmja1         103 GRGGLALALVGTQDRISASSP-RVVGDARARALCADMKRCSYYETCATYGL  152 (175)
T ss_dssp             -CCCCEEEEEEECTTCCSSSC-CCSCHHHHHHHHHTSTTEEEEEEBTTTTB
T ss_pred             ccCCccEEEEeeecCcchhhh-cchhHHHHHHHHHHhCCCeEEEeCCCCCc
Confidence            346789999999999854211 11111111122 23456799999999873

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=7.2e-22  Score=120.27  Aligned_cols=120  Identities=19%  Similarity=0.199  Sum_probs=76.9

Q ss_pred             CCc-ccCCccCceEEEEEE-----CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhC--
Q psy6566           3 EVV-HTSPTIGSNVEEVIW-----KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLN--   74 (126)
Q Consensus         3 ~~~-~~~pTi~~~~~~~~~-----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~--   74 (126)
                      ++. .+.||.+........     ....+.+|||+|++.+...+..+++.++++++|+|++++.+++.+..|+.++.+  
T Consensus        26 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~  105 (175)
T d1ky3a_          26 KYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHA  105 (175)
T ss_dssp             CCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH
T ss_pred             CCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEEEeecccccccchhhhcchhhhhhh
Confidence            444 678888855544444     447799999999999999999999999999999999999999999988877643  


Q ss_pred             -CCCCCCCeEEEEEecCCCCCC---CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          75 -HEDLSKAAVLIYANKQDIKNS---MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        75 -~~~~~~~piilv~nK~D~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                       .....++|+++++||+|+...   .+.++. ..+..   +...+++++|||++|.
T Consensus       106 ~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~-~~~~~---~~~~~~~~e~SA~~g~  157 (175)
T d1ky3a_         106 NVNSPETFPFVILGNKIDAEESKKIVSEKSA-QELAK---SLGDIPLFLTSAKNAI  157 (175)
T ss_dssp             CCSCTTTCCEEEEEECTTSCGGGCCSCHHHH-HHHHH---HTTSCCEEEEBTTTTB
T ss_pred             hhcccccCcEEEEecccchhhhhcchhHHHH-HHHHH---HcCCCeEEEEeCCCCc
Confidence             233357899999999998753   222222 11111   1234679999999873

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=2.2e-22  Score=121.74  Aligned_cols=119  Identities=23%  Similarity=0.327  Sum_probs=84.2

Q ss_pred             CCc-ccCCccCceE--EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCC
Q psy6566           3 EVV-HTSPTIGSNV--EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHED   77 (126)
Q Consensus         3 ~~~-~~~pTi~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~   77 (126)
                      ++. .+.||++...  ..+.+  +.+.+.+|||||++.+..++..++++++++++|+|.+++++++.+..|+....... 
T Consensus        26 ~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-  104 (166)
T d1g16a_          26 KFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA-  104 (166)
T ss_dssp             CCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHS-
T ss_pred             CCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccc-
Confidence            444 6789999555  44555  44778899999999999999999999999999999999999999888776665543 


Q ss_pred             CCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          78 LSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ....|+++++||.|+.......+....    ++...++++++|||++|+
T Consensus       105 ~~~~~~i~~~~k~d~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~~~  149 (166)
T d1g16a_         105 NDEAQLLLVGNKSDMETRVVTADQGEA----LAKELGIPFIESSAKNDD  149 (166)
T ss_dssp             CTTCEEEEEEECTTCTTCCSCHHHHHH----HHHHHTCCEEECBTTTTB
T ss_pred             cCcceeeeecchhhhhhhhhhHHHHHH----HHHhcCCeEEEECCCCCC
Confidence            267899999999998764322222222    223346789999999874

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=3.9e-21  Score=117.94  Aligned_cols=120  Identities=17%  Similarity=0.245  Sum_probs=91.4

Q ss_pred             CCc-ccCCccCceEEEEEE----CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCC--
Q psy6566           3 EVV-HTSPTIGSNVEEVIW----KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNH--   75 (126)
Q Consensus         3 ~~~-~~~pTi~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~--   75 (126)
                      .+. +|.||++.......+    ....+.+||++|++.+...++.++..++++++++|.+++.++..+..|+..+.+.  
T Consensus        26 ~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~  105 (184)
T d1vg8a_          26 KFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQAS  105 (184)
T ss_dssp             CCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC
T ss_pred             CCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEeecccchhhhhcchhhHHHHHHHhc
Confidence            444 788999976655555    4578999999999999999999999999999999999999999998887766443  


Q ss_pred             -CCCCCCeEEEEEecCCCCCC-CCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          76 -EDLSKAAVLIYANKQDIKNS-MSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        76 -~~~~~~piilv~nK~D~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                       ....++|+++|+||+|+.+. ...++....    ......+++++|||++|.
T Consensus       106 ~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~~e~Sak~~~  154 (184)
T d1vg8a_         106 PRDPENFPFVVLGNKIDLENRQVATKRAQAW----CYSKNNIPYFETSAKEAI  154 (184)
T ss_dssp             CSSGGGSCEEEEEECTTSSCCCSCHHHHHHH----HHHTTSCCEEECBTTTTB
T ss_pred             cccccCCCEEEEEEeecccccchhHHHHHHH----HHHhcCCeEEEEcCCCCc
Confidence             22346899999999998763 222222221    112346789999999874

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.3e-20  Score=114.60  Aligned_cols=120  Identities=16%  Similarity=0.258  Sum_probs=86.7

Q ss_pred             CCc-ccCCccCceE--EEEEE--CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhC---
Q psy6566           3 EVV-HTSPTIGSNV--EEVIW--KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLN---   74 (126)
Q Consensus         3 ~~~-~~~pTi~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~---   74 (126)
                      .+. ++.||++...  ..+..  ....+.+||++|+......+..++..++++++++|.+++.+++.+..|+..+.+   
T Consensus        30 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~  109 (174)
T d1wmsa_          30 KFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYAD  109 (174)
T ss_dssp             CCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT
T ss_pred             CCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhc
Confidence            445 7889998554  44444  347789999999999999999999999999999999999999999888766543   


Q ss_pred             CCCCCCCeEEEEEecCCCCC-CCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          75 HEDLSKAAVLIYANKQDIKN-SMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        75 ~~~~~~~piilv~nK~D~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .....+.|+++|+||+|+.+ ....++......    +...++|++|||++|.
T Consensus       110 ~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~----~~~~~~~~e~Sak~~~  158 (174)
T d1wmsa_         110 VKEPESFPFVILGNKIDISERQVSTEEAQAWCR----DNGDYPYFETSAKDAT  158 (174)
T ss_dssp             CSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTCCCEEECCTTTCT
T ss_pred             cccCCCceEEEeccccchhhccCcHHHHHHHHH----HcCCCeEEEEcCCCCc
Confidence            33345789999999999865 333333322211    1234679999999884

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.82  E-value=1.5e-19  Score=109.79  Aligned_cols=125  Identities=74%  Similarity=1.202  Sum_probs=105.5

Q ss_pred             CCCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         2 ~~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      +++....||.+.....+...+..+.+||++|++..+..+..++..++++++++|.++..++.....++..........+.
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~  117 (177)
T d1zj6a1          38 NEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKA  117 (177)
T ss_dssp             TSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTC
T ss_pred             CCCCccccccceeEEEEeecceEEEEeccccccccccchhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccce
Confidence            34556778888888888889999999999999999999999999999999999999999999888777777666655789


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||+|+.......++...+....+..+++++++|||++|+
T Consensus       118 p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~  162 (177)
T d1zj6a1         118 GLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGE  162 (177)
T ss_dssp             EEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred             EEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEeCCCCC
Confidence            999999999998877777888888777777888999999999984

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=3.7e-20  Score=114.33  Aligned_cols=120  Identities=19%  Similarity=0.321  Sum_probs=93.4

Q ss_pred             ccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcc----------cHHHHHHHHHHHhCC
Q psy6566           6 HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRE----------RISLTKEELYKMLNH   75 (126)
Q Consensus         6 ~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~----------~~~~~~~~~~~~~~~   75 (126)
                      +|.||+|+....+..+.+.+++||++|++.++..|..+++.++++++++|.++..          .+.+...+|..++..
T Consensus        28 ~~~pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~  107 (200)
T d2bcjq2          28 SGVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITY  107 (200)
T ss_dssp             SCCCCCSCEEEEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHC
T ss_pred             CCCceeeEEEEEEeccceeeeeccccccccccccccccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhh
Confidence            5889999999999999999999999999999999999999999999999987643          455566778788777


Q ss_pred             CCCCCCeEEEEEecCCCCCC----C--------------CHHHH-----HhhcCcCcccCCceEEEEeeeeeC
Q psy6566          76 EDLSKAAVLIYANKQDIKNS----M--------------SPVEI-----SNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        76 ~~~~~~piilv~nK~D~~~~----~--------------~~~~v-----~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      ....+.|+++++||+|+...    .              .....     ...........+.+.+++|||++|
T Consensus       108 ~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~  180 (200)
T d2bcjq2         108 PWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDT  180 (200)
T ss_dssp             GGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCH
T ss_pred             hhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcC
Confidence            66689999999999996421    0              01111     112223334556788999999986

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=1.1e-17  Score=99.81  Aligned_cols=125  Identities=26%  Similarity=0.469  Sum_probs=106.2

Q ss_pred             CCCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         2 ~~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      +++..+.||++.........+..+.+||++|...+...++.+++.++++++++|.++..++.....++..........+.
T Consensus        23 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (166)
T d2qtvb1          23 DRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDV  102 (166)
T ss_dssp             SCCCCCCCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTC
T ss_pred             CCCCeeeceeeEeEEEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccccchhhhhhhhHHHHhhhhhhccCCc
Confidence            45667899999999988889999999999999999999999999999999999999999999998888888777767889


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhhcCcCc-------ccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNLLDLTS-------IKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~~~~~~-------~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||.|+.......++.+.+....       ...+.+.+++|||++|+
T Consensus       103 ~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  154 (166)
T d2qtvb1         103 PFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN  154 (166)
T ss_dssp             CEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTB
T ss_pred             eEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCC
Confidence            9999999999988766666655543221       23456789999999985

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.77  E-value=2.2e-17  Score=98.98  Aligned_cols=125  Identities=48%  Similarity=0.838  Sum_probs=109.2

Q ss_pred             CCCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566           2 NEVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         2 ~~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      +++..+.||.+........+++.+.+||.+|.+.....+..++..++++++++|+.+..++.....++............
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (169)
T d1upta_          28 GEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKA  107 (169)
T ss_dssp             SSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTC
T ss_pred             CCCcceecccceeeeeeccCceEEEEeeccccccccccchhhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccc
Confidence            45677789999888888889999999999999999999999999999999999999988888888877777776666789


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |+++++||.|+.......++........+....+++++|||++|+
T Consensus       108 ~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~  152 (169)
T d1upta_         108 ILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGT  152 (169)
T ss_dssp             EEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCT
T ss_pred             eEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCC
Confidence            999999999998877777787777777777788999999999984

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=8.8e-19  Score=108.24  Aligned_cols=88  Identities=24%  Similarity=0.463  Sum_probs=72.0

Q ss_pred             ccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCc----------ccHHHHHHHHHHHhCC
Q psy6566           6 HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDR----------ERISLTKEELYKMLNH   75 (126)
Q Consensus         6 ~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~----------~~~~~~~~~~~~~~~~   75 (126)
                      .+.||+|+...++.++...+.+||++|++.++..|..+++.++++++++|.++.          ..+.....++..++..
T Consensus        27 ~~~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  106 (200)
T d1zcba2          27 GQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNN  106 (200)
T ss_dssp             SCCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred             CCCCeeeeEEEEEeeeeeeeeeecccceeeecccccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhC
Confidence            688999999999999999999999999999999999999999999999998863          4466777788888887


Q ss_pred             CCCCCCeEEEEEecCCCC
Q psy6566          76 EDLSKAAVLIYANKQDIK   93 (126)
Q Consensus        76 ~~~~~~piilv~nK~D~~   93 (126)
                      ....++|+++++||+|+.
T Consensus       107 ~~~~~~piilv~NK~Dl~  124 (200)
T d1zcba2         107 RVFSNVSIILFLNKTDLL  124 (200)
T ss_dssp             GGGTTSEEEEEEECHHHH
T ss_pred             hhhcCceEEEEeccchhh
Confidence            766899999999999964

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=1.5e-18  Score=106.60  Aligned_cols=86  Identities=21%  Similarity=0.467  Sum_probs=74.7

Q ss_pred             cCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccH----------HHHHHHHHHHhCCC
Q psy6566           7 TSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERI----------SLTKEELYKMLNHE   76 (126)
Q Consensus         7 ~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~----------~~~~~~~~~~~~~~   76 (126)
                      ..||+|+....+......+++|||+|+++++..|..|++.++++++++|+++.+++          .+...+|..++...
T Consensus        26 ~~~t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~  105 (195)
T d1svsa1          26 HEAGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK  105 (195)
T ss_dssp             HSCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCG
T ss_pred             CCCCccEEEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhccc
Confidence            46899988888889999999999999999999999999999999999999876654          34556677777776


Q ss_pred             CCCCCeEEEEEecCCC
Q psy6566          77 DLSKAAVLIYANKQDI   92 (126)
Q Consensus        77 ~~~~~piilv~nK~D~   92 (126)
                      ...+.|+++++||+|+
T Consensus       106 ~~~~~~~~lv~Nk~d~  121 (195)
T d1svsa1         106 WFTDTSIILFLNKKDL  121 (195)
T ss_dssp             GGTTSEEEEEEECHHH
T ss_pred             ccCCCCEEEEeccchh
Confidence            6678999999999985

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.73  E-value=6.6e-18  Score=106.23  Aligned_cols=89  Identities=25%  Similarity=0.437  Sum_probs=79.9

Q ss_pred             ccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCC----------cccHHHHHHHHHHHhCC
Q psy6566           6 HTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTD----------RERISLTKEELYKMLNH   75 (126)
Q Consensus         6 ~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~----------~~~~~~~~~~~~~~~~~   75 (126)
                      ++.||+|+....+.++++.+++||++|++.++..|..+++.++++++++|.++          .....+...+|..++..
T Consensus        30 ~~~pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~  109 (221)
T d1azta2          30 HVVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN  109 (221)
T ss_dssp             HCCCCCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred             CcCCCCCeEEEEEEECcEEEEEEecCccceeccchhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcC
Confidence            56799999999999999999999999999999999999999999999999875          24567777888889888


Q ss_pred             CCCCCCeEEEEEecCCCCC
Q psy6566          76 EDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        76 ~~~~~~piilv~nK~D~~~   94 (126)
                      +...++|+++++||+|+..
T Consensus       110 ~~~~~~~iil~~NK~Dl~~  128 (221)
T d1azta2         110 RWLRTISVILFLNKQDLLA  128 (221)
T ss_dssp             GGGSSCEEEEEEECHHHHH
T ss_pred             hhhCCCcEEEEechhhhhh
Confidence            7778999999999999753

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.68  E-value=6.5e-16  Score=93.74  Aligned_cols=124  Identities=24%  Similarity=0.491  Sum_probs=95.0

Q ss_pred             CCcccCCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe
Q psy6566           3 EVVHTSPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         3 ~~~~~~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      .+..+.||.+.+...+..++..+.+||+.|+..+...+..+.+.++++++++|.++...+.....++..........+.|
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~  116 (186)
T d1f6ba_          37 RLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVP  116 (186)
T ss_dssp             ------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSC
T ss_pred             CCcceecccccceeEEEecccccccccccchhhhhhHHhhhhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCc
Confidence            45567799999999999999999999999999999999999999999999999999999998888777777766667899


Q ss_pred             EEEEEecCCCCCCCCHHHHHhhcCcC------------cccCCceEEEEeeeeeCC
Q psy6566          83 VLIYANKQDIKNSMSPVEISNLLDLT------------SIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        83 iilv~nK~D~~~~~~~~~v~~~~~~~------------~~~~~~~~~~~~Sa~~~~  126 (126)
                      +++++||.|+.......++...+...            ....+++++++|||++|+
T Consensus       117 ~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  172 (186)
T d1f6ba_         117 ILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQ  172 (186)
T ss_dssp             EEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTB
T ss_pred             eEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEEEeCCCCC
Confidence            99999999998866666555443311            224456789999999985

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=5.7e-15  Score=91.54  Aligned_cols=100  Identities=26%  Similarity=0.312  Sum_probs=75.1

Q ss_pred             CCCcccCCccCceEEEEEE---CCEEEEEEEcCCCcchH-HHHHhhccCCcEEEEEEECCCccc-HHHHHHHHHHHhCC-
Q psy6566           2 NEVVHTSPTIGSNVEEVIW---KNIHFIMWDLGGQQSLR-AAWSTYYTNTEFVILVIDSTDRER-ISLTKEELYKMLNH-   75 (126)
Q Consensus         2 ~~~~~~~pTi~~~~~~~~~---~~~~~~i~Dt~G~~~~~-~~~~~~~~~~~~~l~v~d~~~~~~-~~~~~~~~~~~~~~-   75 (126)
                      +++....||++.+...+.+   .++.+.+||++|++.++ ..+..+++.++++++|+|+++..+ +.+...++..++.. 
T Consensus        23 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~  102 (207)
T d2fh5b1          23 GQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDS  102 (207)
T ss_dssp             SCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcccCCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEEcccccccHHHHHHHHHHHHHhH
Confidence            3455667999988888777   67899999999999886 567888999999999999998654 44555555544332 


Q ss_pred             -CCCCCCeEEEEEecCCCCCCCCHHHH
Q psy6566          76 -EDLSKAAVLIYANKQDIKNSMSPVEI  101 (126)
Q Consensus        76 -~~~~~~piilv~nK~D~~~~~~~~~v  101 (126)
                       ....++|+++++||+|+.++...+++
T Consensus       103 ~~~~~~~pilvv~NK~Dl~~a~~~~~i  129 (207)
T d2fh5b1         103 MALKNSPSLLIACNKQDIAMAKSAKLI  129 (207)
T ss_dssp             HTSTTCCEEEEEEECTTSTTCCCHHHH
T ss_pred             HHhhcCCcEEEEEECcccCCCCCHHHH
Confidence             11256899999999999876554443

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.57  E-value=3.5e-14  Score=86.03  Aligned_cols=108  Identities=15%  Similarity=0.040  Sum_probs=69.9

Q ss_pred             ccCceEEEEEECCEEEEEEEcCCCcch--------HHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC
Q psy6566          10 TIGSNVEEVIWKNIHFIMWDLGGQQSL--------RAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus        10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
                      |...........+..+.+|||+|....        ......+++.||++++|+|++++....  ..++...++... .+.
T Consensus        40 t~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~--~~~i~~~l~~~~-~~~  116 (178)
T d1wf3a1          40 TRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKV  116 (178)
T ss_dssp             CCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTS
T ss_pred             ccccccceeeeeeeeeeecccccccccccccchhcccccccccccccceeeeechhhhhccc--ccchhhheeccc-cch
Confidence            444555566668899999999997443        223345578999999999998764433  334444544322 578


Q ss_pred             eEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeC
Q psy6566          82 AVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        82 piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      |+++|+||+|+....  ++........   .....++++||++|
T Consensus       117 piilv~NK~Dl~~~~--~~~~~~~~~~---~~~~~~~~iSA~~~  155 (178)
T d1wf3a1         117 PILLVGNKLDAAKYP--EEAMKAYHEL---LPEAEPRMLSALDE  155 (178)
T ss_dssp             CEEEEEECGGGCSSH--HHHHHHHHHT---STTSEEEECCTTCH
T ss_pred             hhhhhhcccccccCH--HHHHHHHHhh---cccCceEEEecCCC
Confidence            999999999986531  2222211111   11346788999976

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=9.2e-13  Score=78.24  Aligned_cols=102  Identities=15%  Similarity=0.142  Sum_probs=70.0

Q ss_pred             ceEEEEEECCEEEEEEEcCCCcchHH--------HHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEE
Q psy6566          13 SNVEEVIWKNIHFIMWDLGGQQSLRA--------AWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVL   84 (126)
Q Consensus        13 ~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii   84 (126)
                      .....+...+..+.+||++|......        ....+++.++++++++|..+..++.....|. ..++... .+.|++
T Consensus        39 ~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~~~~~-~~~~ii  116 (161)
T d2gj8a1          39 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWP-EFIARLP-AKLPIT  116 (161)
T ss_dssp             CEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCH-HHHHHSC-TTCCEE
T ss_pred             eEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHhccccceeeccccccchhhhhhhh-hhhhhcc-ccccee
Confidence            44455666899999999999644321        2345578999999999999887766665433 3333222 478999


Q ss_pred             EEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          85 IYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        85 lv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      +|+||+|+.....          ........+++++||++|+
T Consensus       117 lv~NK~Dl~~~~~----------~~~~~~~~~~~~iSAk~~~  148 (161)
T d2gj8a1         117 VVRNKADITGETL----------GMSEVNGHALIRLSARTGE  148 (161)
T ss_dssp             EEEECHHHHCCCC----------EEEEETTEEEEECCTTTCT
T ss_pred             eccchhhhhhhHH----------HHHHhCCCcEEEEECCCCC
Confidence            9999999855311          1112346789999999874

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.36  E-value=6.5e-13  Score=80.41  Aligned_cols=110  Identities=20%  Similarity=0.275  Sum_probs=65.8

Q ss_pred             ccCceEEEEEE-CCEEEEEEEcCCCcc-------hHHHHHhhccCCcEEEEEEECCCcc--cHHHHHHHHHHHhCCCCCC
Q psy6566          10 TIGSNVEEVIW-KNIHFIMWDLGGQQS-------LRAAWSTYYTNTEFVILVIDSTDRE--RISLTKEELYKMLNHEDLS   79 (126)
Q Consensus        10 Ti~~~~~~~~~-~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~~~~l~v~d~~~~~--~~~~~~~~~~~~~~~~~~~   79 (126)
                      |.......... .+..+.+|||||...       ........+..++.+++++|.....  .......++....  ....
T Consensus        35 t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~--~~~~  112 (180)
T d1udxa2          35 TLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYD--PALL  112 (180)
T ss_dssp             SSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHC--HHHH
T ss_pred             ceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhhhhhhcccccccccchhhhhhhhhccc--cccc
Confidence            33344433334 677899999999532       1223344578899999999986532  2222222222211  1113


Q ss_pred             CCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          80 KAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        80 ~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ++|+++++||+|+.......++.+.+     ...+.+++.+||++|+
T Consensus       113 ~~p~iiv~NK~D~~~~~~~~~~~~~~-----~~~~~~~~~iSA~tg~  154 (180)
T d1udxa2         113 RRPSLVALNKVDLLEEEAVKALADAL-----AREGLAVLPVSALTGA  154 (180)
T ss_dssp             HSCEEEEEECCTTSCHHHHHHHHHHH-----HTTTSCEEECCTTTCT
T ss_pred             hhhhhhhhhhhhhhhHHHHHHHHHHH-----HhcCCeEEEEEcCCCC
Confidence            57999999999997642222222222     2346689999999984

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.35  E-value=6.9e-13  Score=80.42  Aligned_cols=107  Identities=16%  Similarity=0.181  Sum_probs=72.2

Q ss_pred             EEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566          15 VEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        15 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~   94 (126)
                      ...+...+..+.++|++|+..|.......+..+|++++++|+.+....+ ....+..+ ..   .++|+++++||+|+.+
T Consensus        51 ~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~~d~~ilv~d~~~g~~~~-~~~~~~~~-~~---~~~p~iiv~NKiD~~~  125 (179)
T d1wb1a4          51 FSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQ-TGEHMLIL-DH---FNIPIIVVITKSDNAG  125 (179)
T ss_dssp             CCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHH-HHHHHHHH-HH---TTCCBCEEEECTTSSC
T ss_pred             ccccccCCccccccccccccccccchhhhhhhccccccccccccccchh-hhhhhhhh-hh---cCCcceeccccccccC
Confidence            3445558899999999999999998888999999999999998754332 23333333 22   4689999999999976


Q ss_pred             CCCHH---HHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          95 SMSPV---EISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        95 ~~~~~---~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .....   +...............+++++||++|+
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~  160 (179)
T d1wb1a4         126 TEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGF  160 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCT
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccCCc
Confidence            32111   111111111112234578999999985

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.34  E-value=2.7e-11  Score=75.65  Aligned_cols=113  Identities=16%  Similarity=0.166  Sum_probs=75.1

Q ss_pred             CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCC-eEEEEE
Q psy6566           9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKA-AVLIYA   87 (126)
Q Consensus         9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-piilv~   87 (126)
                      .|+......+...+..+.+.|+||++.|-.....-...+|++++|+|+.+.-.- +..+.+..+ ..   .++ .++++.
T Consensus        75 ~ti~~~~~~~~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~-Qt~e~~~~~-~~---~gv~~iiv~v  149 (222)
T d1zunb3          75 ITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIA-SL---LGIKHIVVAI  149 (222)
T ss_dssp             CCCCCEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHH-HH---TTCCEEEEEE
T ss_pred             CCceeeEEEEeccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCccc-chHHHHHHH-HH---cCCCEEEEEE
Confidence            344444555556889999999999999999888889999999999998864322 233333322 22   344 589999


Q ss_pred             ecCCCCCCCCH--HH----HHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          88 NKQDIKNSMSP--VE----ISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        88 nK~D~~~~~~~--~~----v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ||+|+.+....  .+    +...+.....+...++++.+||++|+
T Consensus       150 NK~D~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~  194 (222)
T d1zunb3         150 NKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGD  194 (222)
T ss_dssp             ECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCT
T ss_pred             EccccccccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCc
Confidence            99999763211  11    11222222223456889999999884

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.32  E-value=5.1e-12  Score=78.10  Aligned_cols=113  Identities=18%  Similarity=0.152  Sum_probs=76.1

Q ss_pred             CCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCe-EEEE
Q psy6566           8 SPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAA-VLIY   86 (126)
Q Consensus         8 ~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv   86 (126)
                      .-|+......+..++.++.++||||++.|.......++.+|++|+|+|+.+--.. +..+.|..+..    .++| ++++
T Consensus        52 giTi~~~~~~~~~~~~~i~iiDtPGh~df~~~~~~~~~~aD~avlVvda~~Gv~~-qt~~~~~~~~~----~gi~~iiv~  126 (204)
T d2c78a3          52 GITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ----VGVPYIVVF  126 (204)
T ss_dssp             TCCCSCEEEEEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH----TTCCCEEEE
T ss_pred             CeEEEeeEEEEEeCCeEEEEEeCCCchhhHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCeEEEE
Confidence            3466666677778999999999999999999888889999999999999865433 33444444433    2555 7788


Q ss_pred             EecCCCCCCCC-HHHH----HhhcCcCcccCCceEEEEeeeeeC
Q psy6566          87 ANKQDIKNSMS-PVEI----SNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        87 ~nK~D~~~~~~-~~~v----~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      .||+|+.+... .+++    ...+.........++++..||..+
T Consensus       127 iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~i~~sa~~~  170 (204)
T d2c78a3         127 MNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLA  170 (204)
T ss_dssp             EECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHH
T ss_pred             EEecccCCCHHHHHHHHHHHHHHHHhcCCCcccceeeeeechhh
Confidence            99999865311 1222    222221112334567888888643

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.31  E-value=2.4e-12  Score=79.10  Aligned_cols=107  Identities=21%  Similarity=0.156  Sum_probs=71.6

Q ss_pred             EEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566          15 VEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        15 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~   94 (126)
                      ...+...+..+.+.||||+..|.......+..+|++++|+|+.+.- ..+.++.+..+...   ...|++++.||+|+..
T Consensus        58 ~~~~~~~~~~~~~iDtPGh~~f~~~~~~~~~~aD~allVVda~~G~-~~QT~~~~~~a~~~---~~~~iIv~iNK~D~~~  133 (196)
T d1d2ea3          58 HVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGP-MPQTREHLLLARQI---GVEHVVVYVNKADAVQ  133 (196)
T ss_dssp             EEEEECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCS-CHHHHHHHHHHHHT---TCCCEEEEEECGGGCS
T ss_pred             eEEEEeceeeEEeecCcchHHHHHHHHHHHhhcCeEEEEEEcCCCC-chhHHHHHHHHHHh---cCCcEEEEEecccccc
Confidence            3444448899999999999999988888899999999999998643 23344444444332   3468999999999865


Q ss_pred             CCC-HHHHH----hhcCcCcccCCceEEEEeeeeeC
Q psy6566          95 SMS-PVEIS----NLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        95 ~~~-~~~v~----~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      ... .+.+.    ..+...-.....++++.+||++|
T Consensus       134 ~~~~~~~i~~~i~~~l~~~~~~~~~~pii~iSa~~g  169 (196)
T d1d2ea3         134 DSEMVELVELEIRELLTEFGYKGEETPIIVGSALCA  169 (196)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhCCCcccCEEEEEEcccc
Confidence            311 12222    22211111234578999999875

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.29  E-value=1.3e-10  Score=68.61  Aligned_cols=101  Identities=25%  Similarity=0.312  Sum_probs=69.8

Q ss_pred             ceEEEEEECCEEEEEEEcCCCc--------ch-HHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeE
Q psy6566          13 SNVEEVIWKNIHFIMWDLGGQQ--------SL-RAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAV   83 (126)
Q Consensus        13 ~~~~~~~~~~~~~~i~Dt~G~~--------~~-~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi   83 (126)
                      .....+...+..+.+|||+|..        .. .......++.+|++++|+|++++....... .+...      ...++
T Consensus        38 ~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~d~~~~~~~~~~~-~~~~~------~~~~~  110 (160)
T d1xzpa2          38 VISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRK-ILERI------KNKRY  110 (160)
T ss_dssp             SCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHH-HHHHH------TTSSE
T ss_pred             ceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCcchhhhh-hhhhc------ccccc
Confidence            4445566699999999999942        11 112233467899999999999876655432 22222      35688


Q ss_pred             EEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          84 LIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        84 ilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ++++||+|+.+....+++...+..      ..+++++||++|+
T Consensus       111 i~~~~k~d~~~~~~~~~~~~~~~~------~~~~~~vSA~~g~  147 (160)
T d1xzpa2         111 LVVINKVDVVEKINEEEIKNKLGT------DRHMVKISALKGE  147 (160)
T ss_dssp             EEEEEECSSCCCCCHHHHHHHHTC------STTEEEEEGGGTC
T ss_pred             eeeeeeccccchhhhHHHHHHhCC------CCcEEEEECCCCC
Confidence            999999999887666666655542      2358999999984

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.26  E-value=3.6e-12  Score=78.78  Aligned_cols=99  Identities=17%  Similarity=0.125  Sum_probs=65.5

Q ss_pred             EEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHH--
Q psy6566          23 IHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVE--  100 (126)
Q Consensus        23 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--  100 (126)
                      ..+.+.||||+..|.......+..+|++++|+|+.+.-.-...+..+..+...   .-.|++++.||+|+........  
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~---~i~~iIV~vNK~Dl~~~~~~~~~~  162 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQY  162 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred             EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc---CCceeeeccccCCCccchHHHHHH
Confidence            46899999999999888888899999999999987742222333333333222   2348899999999976321111  


Q ss_pred             --HHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566         101 --ISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus       101 --v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                        +.....  .....+++++.+||++|.
T Consensus       163 ~~~~~~l~--~~~~~~~p~ipiSA~~g~  188 (205)
T d2qn6a3         163 RQIKQFTK--GTWAENVPIIPVSALHKI  188 (205)
T ss_dssp             HHHHHHHT--TSTTTTCCEEECBTTTTB
T ss_pred             HHHHHHhc--cccCCCCeEEEEeCCCCC
Confidence              111111  112345789999999873

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.24  E-value=9.4e-12  Score=78.01  Aligned_cols=69  Identities=17%  Similarity=0.187  Sum_probs=52.8

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~   94 (126)
                      ++..+.++||||++.|.......+..+|++++|+|+.+.-... ....+..+..    .++|+++++||+|+..
T Consensus        68 ~~~~~~~iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~----~~~p~iivlNK~D~~~  136 (227)
T d1g7sa4          68 TLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQ-TQEALNILRM----YRTPFVVAANKIDRIH  136 (227)
T ss_dssp             TCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHH-HHHHHHHHHH----TTCCEEEEEECGGGST
T ss_pred             cccccccccccceecccccchhcccccceEEEEEecccCcccc-hhHHHHHhhc----CCCeEEEEEECccCCC
Confidence            5678999999999999887777789999999999998643322 2233333332    4689999999999865

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.23  E-value=1.4e-11  Score=77.82  Aligned_cols=114  Identities=17%  Similarity=0.109  Sum_probs=75.7

Q ss_pred             CCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCccc------HHHHHHHHHHHhCCCCCCCC
Q psy6566           8 SPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER------ISLTKEELYKMLNHEDLSKA   81 (126)
Q Consensus         8 ~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~   81 (126)
                      .-|+......+...+.++.+.||||+..|......-...+|++|+|+|+++...      ..+.++.+.....    -++
T Consensus        69 GiTi~~~~~~~~~~~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~----~gv  144 (239)
T d1f60a3          69 GITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGV  144 (239)
T ss_dssp             TCCCSCSCEEEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTC
T ss_pred             eeccccceeEeccCCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHH----cCC
Confidence            357777778888899999999999999999998888999999999999875210      0123333333322    244


Q ss_pred             -eEEEEEecCCCCCCCC--HHHH----HhhcCcCcccCCceEEEEeeeeeC
Q psy6566          82 -AVLIYANKQDIKNSMS--PVEI----SNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        82 -piilv~nK~D~~~~~~--~~~v----~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                       +++++.||+|+.+...  ..++    ...+.....+...++++.+||.+|
T Consensus       145 ~~iiv~iNKmD~~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G  195 (239)
T d1f60a3         145 RQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNG  195 (239)
T ss_dssp             CEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTC
T ss_pred             CeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCC
Confidence             5889999999876321  1111    121111111233567889998876

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.22  E-value=1.2e-11  Score=74.06  Aligned_cols=108  Identities=16%  Similarity=0.131  Sum_probs=64.8

Q ss_pred             CccCceEEEEEECCEEEEEEEcCCCcc---------hHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCC
Q psy6566           9 PTIGSNVEEVIWKNIHFIMWDLGGQQS---------LRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLS   79 (126)
Q Consensus         9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~---------~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~   79 (126)
                      +|.......+......+.+||++|...         .......++..+|+++++.|..+...... .. +...++.   .
T Consensus        34 ~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ad~i~~~~~~~~~~~~~~-~~-~~~~l~~---~  108 (171)
T d1mkya1          34 VTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED-ES-LADFLRK---S  108 (171)
T ss_dssp             ---CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH-HH-HHHHHHH---H
T ss_pred             eeeccccccccccccccccccccceeeeeccccccccccccccccccCcEEEEeecccccccccc-cc-ccccccc---c
Confidence            344455566777899999999999422         22234455789999999999876543332 22 3333333   4


Q ss_pred             CCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          80 KAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        80 ~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ++|+++++||+|+..+...+...+..     +.....++++||++|.
T Consensus       109 ~~pviiv~NK~Dl~~~~~~~~~~~~~-----~~~~~~~i~iSAk~g~  150 (171)
T d1mkya1         109 TVDTILVANKAENLREFEREVKPELY-----SLGFGEPIPVSAEHNI  150 (171)
T ss_dssp             TCCEEEEEESCCSHHHHHHHTHHHHG-----GGSSCSCEECBTTTTB
T ss_pred             cccccccchhhhhhhhhhhHHHHHHH-----hcCCCCeEEEecCCCC
Confidence            68999999999986431111111111     1122246889999873

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.19  E-value=5.1e-12  Score=77.46  Aligned_cols=100  Identities=18%  Similarity=0.188  Sum_probs=65.3

Q ss_pred             CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHH--
Q psy6566          22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPV--   99 (126)
Q Consensus        22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~--   99 (126)
                      ...+.++||||++.|.......+..+|++++|+|+.+........+.+..+...   .-.+++++.||+|+.+.....  
T Consensus        77 ~~~~~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~---~~~~iiv~inK~D~~d~~~~~~~  153 (195)
T d1kk1a3          77 VRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALEN  153 (195)
T ss_dssp             EEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHH
T ss_pred             ceeEeeeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh---cCccceeeeecccchhhHHHHHH
Confidence            356899999999999998888889999999999988753223333333322221   224588899999987632111  


Q ss_pred             --HHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566         100 --EISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus       100 --~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                        .+.+.+..  .....++++++||++|+
T Consensus       154 ~~~~~~~~~~--~~~~~~~iIpiSA~~G~  180 (195)
T d1kk1a3         154 YRQIKEFIEG--TVAENAPIIPISALHGA  180 (195)
T ss_dssp             HHHHHHHHTT--STTTTCCEEECBTTTTB
T ss_pred             HHHHHHHhcc--ccCCCCeEEEEECCCCC
Confidence              11222111  12235689999999884

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.16  E-value=5.1e-11  Score=74.50  Aligned_cols=114  Identities=18%  Similarity=0.204  Sum_probs=69.9

Q ss_pred             CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCccc------HHHHHHHHHHHhCCCCCCCCe
Q psy6566           9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER------ISLTKEELYKMLNHEDLSKAA   82 (126)
Q Consensus         9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~p   82 (126)
                      -|+......++.++..+.+.||||+..|........+-+|++++|+|+.+-..      ....++.+......   ...+
T Consensus        67 ~ti~~~~~~~~~~~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~---~~~~  143 (224)
T d1jnya3          67 VTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM---GLDQ  143 (224)
T ss_dssp             -------CEEECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT---TCTT
T ss_pred             ccccceEEEEecCCceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh---CCCc
Confidence            34445555666788999999999999999999889999999999999986311      11222222222111   3346


Q ss_pred             EEEEEecCCCCCCC-CHH---HH----HhhcCcCcccCCceEEEEeeeeeC
Q psy6566          83 VLIYANKQDIKNSM-SPV---EI----SNLLDLTSIKKQQWHIQSCCALTG  125 (126)
Q Consensus        83 iilv~nK~D~~~~~-~~~---~v----~~~~~~~~~~~~~~~~~~~Sa~~~  125 (126)
                      ++++.||+|+.... ...   .+    ...+.........++++.+||.+|
T Consensus       144 iIv~iNK~D~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G  194 (224)
T d1jnya3         144 LIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSG  194 (224)
T ss_dssp             CEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTT
T ss_pred             eEEEEEcccCCCccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCC
Confidence            88899999987522 211   11    111111112345678999999876

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.12  E-value=4.6e-11  Score=73.41  Aligned_cols=85  Identities=21%  Similarity=0.270  Sum_probs=59.5

Q ss_pred             ceEEEEEECCEEEEEEEcCCCcchHHHHHhhc----cCCcEEEEEEECCC-cccHHHHHHHHHHHh---CCCCCCCCeEE
Q psy6566          13 SNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYY----TNTEFVILVIDSTD-RERISLTKEELYKML---NHEDLSKAAVL   84 (126)
Q Consensus        13 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~----~~~~~~l~v~d~~~-~~~~~~~~~~~~~~~---~~~~~~~~pii   84 (126)
                      .....+..++..+.+|||||++.++..+..++    ..++.+++++|+.+ ..+++....|+...+   +.....+.|++
T Consensus        36 ~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~pii  115 (209)
T d1nrjb_          36 EPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL  115 (209)
T ss_dssp             SCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEE
T ss_pred             ceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeE
Confidence            33444445888899999999998877665553    45688999999764 556666666554332   22223679999


Q ss_pred             EEEecCCCCCCCC
Q psy6566          85 IYANKQDIKNSMS   97 (126)
Q Consensus        85 lv~nK~D~~~~~~   97 (126)
                      +++||+|+.+...
T Consensus       116 iv~NK~D~~~~~~  128 (209)
T d1nrjb_         116 IACNKSELFTARP  128 (209)
T ss_dssp             EEEECTTSTTCCC
T ss_pred             EEEEeecccccCc
Confidence            9999999987544

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.09  E-value=6.5e-11  Score=71.65  Aligned_cols=112  Identities=21%  Similarity=0.185  Sum_probs=64.5

Q ss_pred             CccCceEEEEEE-CCEEEEEEEcCCCcc-------hHHHHHhhccCCcEEEEEEECCCcccHHH--HHH--HHHHHhCCC
Q psy6566           9 PTIGSNVEEVIW-KNIHFIMWDLGGQQS-------LRAAWSTYYTNTEFVILVIDSTDRERISL--TKE--ELYKMLNHE   76 (126)
Q Consensus         9 pTi~~~~~~~~~-~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~--~~~~~~~~~   76 (126)
                      +|.........+ .+..+.+|||||...       ........+..++.++++++.........  ...  .........
T Consensus        34 ~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (185)
T d1lnza2          34 TTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNL  113 (185)
T ss_dssp             SCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCS
T ss_pred             ceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhhhhhheeeecccccchhhhhhhhhhhccchhhh
Confidence            455555656666 567899999999521       11112223566888888887664322111  111  112222333


Q ss_pred             CCCCCeEEEEEecCCCCCCCC-HHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          77 DLSKAAVLIYANKQDIKNSMS-PVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        77 ~~~~~piilv~nK~D~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ...++|+++++||+|+..... .+.+...+      ..+.+++.+||++|+
T Consensus       114 ~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~------~~~~~v~~iSA~~g~  158 (185)
T d1lnza2         114 RLTERPQIIVANKMDMPEAAENLEAFKEKL------TDDYPVFPISAVTRE  158 (185)
T ss_dssp             STTTSCBCBEEECTTSTTHHHHHHHHHHHC------CSCCCBCCCSSCCSS
T ss_pred             hccCCcchhhccccchHhHHHHHHHHHHHh------ccCCcEEEEECCCCC
Confidence            445789999999999976321 11222222      234578999999984

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.08  E-value=4.8e-10  Score=71.87  Aligned_cols=83  Identities=19%  Similarity=0.223  Sum_probs=67.4

Q ss_pred             CCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEE
Q psy6566           8 SPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYA   87 (126)
Q Consensus         8 ~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~   87 (126)
                      .-||......+.+++.++.+.||||...|.......++-+|++|+|+|+.+.-... ....|....+    .++|.++++
T Consensus        56 ~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~e~~~~l~~~D~avlVvda~~Gv~~~-T~~~w~~a~~----~~lP~i~fI  130 (276)
T d2bv3a2          56 GITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQ-SETVWRQAEK----YKVPRIAFA  130 (276)
T ss_dssp             CCCCCCSEEEEEETTEEEEEECCCSSSSCSTTHHHHHHHCCEEEEEEETTTSSCHH-HHHHHHHHHT----TTCCEEEEE
T ss_pred             CCccccceeeeccCCeEEEEecCCchhhhHHHHHHHHHhhhheEEeccccCCcchh-HHHHHHHHHH----cCCCEEEEE
Confidence            45666777888889999999999999999998888899999999999998753333 3445665543    479999999


Q ss_pred             ecCCCCCC
Q psy6566          88 NKQDIKNS   95 (126)
Q Consensus        88 nK~D~~~~   95 (126)
                      ||+|..+.
T Consensus       131 NKmDr~~a  138 (276)
T d2bv3a2         131 NKMDKTGA  138 (276)
T ss_dssp             ECTTSTTC
T ss_pred             eccccccc
Confidence            99998774

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.06  E-value=1.2e-10  Score=70.38  Aligned_cols=109  Identities=15%  Similarity=0.101  Sum_probs=65.5

Q ss_pred             ceEEEEEECCEEEEEEEcCCCcchHH------------HHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCC
Q psy6566          13 SNVEEVIWKNIHFIMWDLGGQQSLRA------------AWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSK   80 (126)
Q Consensus        13 ~~~~~~~~~~~~~~i~Dt~G~~~~~~------------~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~   80 (126)
                      .....+.+++..+.++|++|......            .....++.+|++++|+|+...... ....+. ..++.   .+
T Consensus        46 ~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dvii~v~d~~~~~~~-~~~~~~-~~~~~---~~  120 (186)
T d1mkya2          46 PVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITR-QDQRMA-GLMER---RG  120 (186)
T ss_dssp             -CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCH-HHHHHH-HHHHH---TT
T ss_pred             cceeeeccCCceeeeeccCCccccccccccccccchhHHHHHHHhcCCEEEEeecccccchh-hHHHHH-HHHHH---cC
Confidence            44456677889999999999754332            234446789999999998765332 222223 23333   46


Q ss_pred             CeEEEEEecCCCCCCC--CHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          81 AAVLIYANKQDIKNSM--SPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        81 ~piilv~nK~D~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      .|+++++||+|+....  ...++.+.+..........+++.+||++|.
T Consensus       121 ~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSa~~g~  168 (186)
T d1mkya2         121 RASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGW  168 (186)
T ss_dssp             CEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTB
T ss_pred             CceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEEEEeCCCCC
Confidence            8999999999986432  223333332222222223478999999873

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.03  E-value=2.8e-10  Score=71.97  Aligned_cols=114  Identities=18%  Similarity=0.129  Sum_probs=59.5

Q ss_pred             CccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCccc------HHHHHHHHHHHhCCCCCCCC-
Q psy6566           9 PTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRER------ISLTKEELYKMLNHEDLSKA-   81 (126)
Q Consensus         9 pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~-   81 (126)
                      .|+......+..++..+.+.||||+..|-.....-...+|++++|+|+.+...      ....+..+..+ ..   .++ 
T Consensus        88 ~ti~~~~~~~~~~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~-~~---~~i~  163 (245)
T d1r5ba3          88 KTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA-RT---QGIN  163 (245)
T ss_dssp             ------CCEEECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH-HH---TTCS
T ss_pred             ccccccccccccccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHH-HH---cCCC
Confidence            44444455566688899999999999999988888899999999999976310      00222222222 11   234 


Q ss_pred             eEEEEEecCCCCCCC-CH---HHHHhhcCcC------cccCCceEEEEeeeeeCC
Q psy6566          82 AVLIYANKQDIKNSM-SP---VEISNLLDLT------SIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        82 piilv~nK~D~~~~~-~~---~~v~~~~~~~------~~~~~~~~~~~~Sa~~~~  126 (126)
                      +++++.||+|+.... ..   .++...+...      +.....++++.+||++|+
T Consensus       164 ~iiv~iNKmD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~  218 (245)
T d1r5ba3         164 HLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQ  218 (245)
T ss_dssp             SEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTB
T ss_pred             eEEEEEEcCCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCC
Confidence            488999999987532 11   2222222111      111225789999999884

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.00  E-value=3.1e-09  Score=67.81  Aligned_cols=81  Identities=9%  Similarity=0.144  Sum_probs=65.2

Q ss_pred             CCccCceEEEEEECCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEE
Q psy6566           8 SPTIGSNVEEVIWKNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYA   87 (126)
Q Consensus         8 ~pTi~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~   87 (126)
                      ..|+......+.+++.++.++||||+..|.......++.+|++++|+|+.+.-... ....|....+    .++|.+++.
T Consensus        52 ~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e~~~al~~~D~avlvvda~~Gv~~~-t~~~~~~~~~----~~~p~~i~i  126 (267)
T d2dy1a2          52 RTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER----LGLPRMVVV  126 (267)
T ss_dssp             TSCCSCEEEEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEE
T ss_pred             CCeEEeecccccccccceeEEccCchhhhhhhhhhhhcccCceEEEeeccCCccch-hHHHHHhhhh----ccccccccc
Confidence            35777777788889999999999999999999988999999999999998653333 3344554543    368999999


Q ss_pred             ecCCCC
Q psy6566          88 NKQDIK   93 (126)
Q Consensus        88 nK~D~~   93 (126)
                      ||+|..
T Consensus       127 Nk~D~~  132 (267)
T d2dy1a2         127 TKLDKG  132 (267)
T ss_dssp             ECGGGC
T ss_pred             cccccc
Confidence            999974

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.98  E-value=6.7e-11  Score=71.36  Aligned_cols=99  Identities=15%  Similarity=0.203  Sum_probs=53.9

Q ss_pred             EEEEEEcCCCc-----------chH----HHHHhhccCCcEEEEEEECCCcccHHHH---------HHHHHHHhCCCCCC
Q psy6566          24 HFIMWDLGGQQ-----------SLR----AAWSTYYTNTEFVILVIDSTDRERISLT---------KEELYKMLNHEDLS   79 (126)
Q Consensus        24 ~~~i~Dt~G~~-----------~~~----~~~~~~~~~~~~~l~v~d~~~~~~~~~~---------~~~~~~~~~~~~~~   79 (126)
                      .+.+|||||..           .+.    .......+.+|++++|+|...+......         ...+...+..   .
T Consensus        44 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~  120 (184)
T d2cxxa1          44 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---L  120 (184)
T ss_dssp             TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---T
T ss_pred             cceecccCCceeccccccccccccchhhhhhhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH---c
Confidence            36789999941           111    1233446789999999998643211111         0011122222   3


Q ss_pred             CCeEEEEEecCCCCCCCC--HHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          80 KAAVLIYANKQDIKNSMS--PVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        80 ~~piilv~nK~D~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      ++|+++|+||+|+.+...  ............ ......++++||++|+
T Consensus       121 ~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~vSA~~g~  168 (184)
T d2cxxa1         121 DIPTIVAVNKLDKIKNVQEVINFLAEKFEVPL-SEIDKVFIPISAKFGD  168 (184)
T ss_dssp             TCCEEEEEECGGGCSCHHHHHHHHHHHHTCCG-GGHHHHEEECCTTTCT
T ss_pred             CCCEEEEEeeeehhhhHHHHHHHHHHHhcccc-cccCCeEEEEECCCCC
Confidence            689999999999765311  111222222211 1223357889999874

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.81  E-value=4.2e-09  Score=64.01  Aligned_cols=80  Identities=13%  Similarity=-0.013  Sum_probs=49.1

Q ss_pred             hhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEee
Q psy6566          42 TYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCC  121 (126)
Q Consensus        42 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~S  121 (126)
                      ..+..++++++++|+.++..- ...+++. .++.   .++|+++|+||+|+.+.....+..+............+++.+|
T Consensus       101 ~~~~~~~~vi~viD~~~~~~~-~~~~~~~-~l~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S  175 (195)
T d1svia_         101 TTREELKAVVQIVDLRHAPSN-DDVQMYE-FLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFS  175 (195)
T ss_dssp             HHCTTEEEEEEEEETTSCCCH-HHHHHHH-HHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECC
T ss_pred             ccccchhhhhhhhhccccccc-ccccccc-cccc---ccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCEEEEe
Confidence            445678999999998765322 1222232 3333   4689999999999865433333333222222234556899999


Q ss_pred             eeeCC
Q psy6566         122 ALTGE  126 (126)
Q Consensus       122 a~~~~  126 (126)
                      |++|+
T Consensus       176 A~~~~  180 (195)
T d1svia_         176 SETKK  180 (195)
T ss_dssp             TTTCT
T ss_pred             CCCCC
Confidence            99874

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.69  E-value=5.5e-08  Score=63.94  Aligned_cols=68  Identities=16%  Similarity=0.211  Sum_probs=54.2

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCC
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIK   93 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~   93 (126)
                      ++..+.+.||||+..|.......++-+|++++|+|+.+.-... ....|..+.+    .+.|++++.||+|..
T Consensus        94 ~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~q-T~~~~~~a~~----~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          94 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQ-TETVLRQALG----ERIKPVVVINKVDRA  161 (341)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHH-HHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred             cceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchh-HHHHHHHHHH----cCCCeEEEEECcccc
Confidence            3467999999999999999988999999999999998754433 3344555544    368999999999964

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.21  E-value=1.7e-05  Score=46.68  Aligned_cols=99  Identities=21%  Similarity=0.153  Sum_probs=56.4

Q ss_pred             ECCEEEEEEEcCCCcchHHH--HHh-------hccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecC
Q psy6566          20 WKNIHFIMWDLGGQQSLRAA--WST-------YYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQ   90 (126)
Q Consensus        20 ~~~~~~~i~Dt~G~~~~~~~--~~~-------~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~   90 (126)
                      .+...+..||++|.......  ...       ....++.++++.|..+...  ....++..+.+    ...|.++++||.
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~--~~~~~~~~l~~----~~~~~i~v~~k~  123 (179)
T d1egaa1          50 EGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTP--DDEMVLNKLRE----GKAPVILAVNKV  123 (179)
T ss_dssp             ETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCCH--HHHHHHHHHHS----SSSCEEEEEEST
T ss_pred             cCCceeEeecCCCceecchhhhhhhhhhccccchhhcceeEEEEecCccch--hHHHHHHHhhh----ccCceeeeeeee
Confidence            37788888999987544322  111       1335677888888765432  22222333332    356889999999


Q ss_pred             CCCCCCCHHHHHhhcCcCcccCCceEEEEeeeeeCC
Q psy6566          91 DIKNSMSPVEISNLLDLTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus        91 D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  126 (126)
                      |.....  .++..............+++++||++|+
T Consensus       124 d~~~~~--~~~~~~~~~~~~~~~~~~~~~vSA~~g~  157 (179)
T d1egaa1         124 DNVQEK--ADLLPHLQFLASQMNFLDIVPISAETGL  157 (179)
T ss_dssp             TTCCCH--HHHHHHHHHHHTTSCCSEEEECCTTTTT
T ss_pred             eccchh--hhhhhHhhhhhhhcCCCCEEEEeCcCCC
Confidence            976542  2222211111112234579999999874

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.11  E-value=7.7e-07  Score=56.70  Aligned_cols=75  Identities=12%  Similarity=0.110  Sum_probs=48.8

Q ss_pred             HHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEE
Q psy6566          39 AWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQ  118 (126)
Q Consensus        39 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~  118 (126)
                      .....++.+|.+++|+|+-.+.+..+-  .+.++++     +.|.++|.||+|+.+......+..++.     ......+
T Consensus         8 ~i~~~i~~~DvIl~V~DaR~P~ss~~~--~l~~~~~-----~Kp~IlVlNK~DLv~~~~~~~w~~~f~-----~~~~~~i   75 (273)
T d1puja_           8 EVTEKLKLIDIVYELVDARIPMSSRNP--MIEDILK-----NKPRIMLLNKADKADAAVTQQWKEHFE-----NQGIRSL   75 (273)
T ss_dssp             HHHHHGGGCSEEEEEEETTSTTTTSCH--HHHHHCS-----SSCEEEEEECGGGSCHHHHHHHHHHHH-----TTTCCEE
T ss_pred             HHHHHHHhCCEEEEEEECCCCCCCCCH--HHHHHHc-----CCCeEEEEECccCCchHHHHHHHHHHH-----hcCCccc
Confidence            345569999999999998776544322  3455543     579999999999987432333333332     2334567


Q ss_pred             EeeeeeC
Q psy6566         119 SCCALTG  125 (126)
Q Consensus       119 ~~Sa~~~  125 (126)
                      .+||+++
T Consensus        76 ~isa~~~   82 (273)
T d1puja_          76 SINSVNG   82 (273)
T ss_dssp             ECCTTTC
T ss_pred             eeecccC
Confidence            7787654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.93  E-value=2.1e-06  Score=53.06  Aligned_cols=76  Identities=21%  Similarity=0.206  Sum_probs=46.3

Q ss_pred             ccCCcEEEEEEECCCcc-cHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeee
Q psy6566          44 YTNTEFVILVIDSTDRE-RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCA  122 (126)
Q Consensus        44 ~~~~~~~l~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa  122 (126)
                      +.+.|.+++|+.+.+|+ +...+.+++-... .   .++|.++++||+||.++.....+.....   .....++++.+||
T Consensus         8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~-~---~~i~pvIvlnK~DL~~~~~~~~~~~~~~---~~~~~~~v~~vSa   80 (225)
T d1u0la2           8 VANVDQVILVVTVKMPETSTYIIDKFLVLAE-K---NELETVMVINKMDLYDEDDLRKVRELEE---IYSGLYPIVKTSA   80 (225)
T ss_dssp             EESCCEEEEEECSSTTCCCHHHHHHHHHHHH-H---TTCEEEEEECCGGGCCHHHHHHHHHHHH---HHTTTSCEEECCT
T ss_pred             cccCCEEEEEEeCCCCCCCHHHHHHHHHHHH-H---cCCCEEEEEeCcccCCHHHHHHHHHhhc---ccccceeEEEecc
Confidence            56789999999887765 3444444443332 2   5789999999999976321111211111   1122356889999


Q ss_pred             eeCC
Q psy6566         123 LTGE  126 (126)
Q Consensus       123 ~~~~  126 (126)
                      ++++
T Consensus        81 ~~~~   84 (225)
T d1u0la2          81 KTGM   84 (225)
T ss_dssp             TTCT
T ss_pred             ccch
Confidence            8763

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.75  E-value=4.7e-06  Score=51.67  Aligned_cols=77  Identities=10%  Similarity=0.107  Sum_probs=46.9

Q ss_pred             ccCCcEEEEEEECCCcc-cHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCcccCCceEEEEeee
Q psy6566          44 YTNTEFVILVIDSTDRE-RISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTSIKKQQWHIQSCCA  122 (126)
Q Consensus        44 ~~~~~~~l~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa  122 (126)
                      +.+.|.+++|+.+.+|+ +...+.+++-..- .   .+++.++++||+||.......+........ -...+++++.+||
T Consensus         8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~-~---~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~-y~~~g~~v~~~Sa   82 (231)
T d1t9ha2           8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVE-A---NDIQPIICITKMDLIEDQDTEDTIQAYAED-YRNIGYDVYLTSS   82 (231)
T ss_dssp             EECCCEEEEEEESTTTTCCHHHHHHHHHHHH-T---TTCEEEEEEECGGGCCCHHHHHHHHHHHHH-HHHHTCCEEECCH
T ss_pred             ccccCEEEEEEECCCCCCCHHHHHHHHHHHH-H---cCCCEEEEEecccccccHHHHHHHHHHHHH-Hhhccccceeeec
Confidence            56889999999987764 4454544444332 2   578999999999997642211111111101 1123567889998


Q ss_pred             eeC
Q psy6566         123 LTG  125 (126)
Q Consensus       123 ~~~  125 (126)
                      +++
T Consensus        83 ~~~   85 (231)
T d1t9ha2          83 KDQ   85 (231)
T ss_dssp             HHH
T ss_pred             CCh
Confidence            765

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.64  E-value=0.00025  Score=44.37  Aligned_cols=83  Identities=5%  Similarity=-0.035  Sum_probs=49.4

Q ss_pred             ccCceEEEEEECCEEEEEEEcCCCcch-------HHHHHhh--ccCCcEEEEEEECCCcc---cHHHHHHHHHHHhCCCC
Q psy6566          10 TIGSNVEEVIWKNIHFIMWDLGGQQSL-------RAAWSTY--YTNTEFVILVIDSTDRE---RISLTKEELYKMLNHED   77 (126)
Q Consensus        10 Ti~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~--~~~~~~~l~v~d~~~~~---~~~~~~~~~~~~~~~~~   77 (126)
                      |...........+..+.++||||....       ......+  ....++++||++++...   .-......+...+... 
T Consensus        67 T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~-  145 (257)
T d1h65a_          67 GPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKG-  145 (257)
T ss_dssp             CSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGG-
T ss_pred             ceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchh-
Confidence            334556667779999999999995321       1122222  23568899998876532   1122223333333221 


Q ss_pred             CCCCeEEEEEecCCCCC
Q psy6566          78 LSKAAVLIYANKQDIKN   94 (126)
Q Consensus        78 ~~~~piilv~nK~D~~~   94 (126)
                       --.+++++.||+|...
T Consensus       146 -~~~~~ivv~t~~D~~~  161 (257)
T d1h65a_         146 -IWNKAIVALTHAQFSP  161 (257)
T ss_dssp             -GGGGEEEEEECCSCCC
T ss_pred             -hhhCEEEEEECcccCC
Confidence             1247899999999864

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.60  E-value=7.5e-05  Score=49.79  Aligned_cols=65  Identities=15%  Similarity=0.194  Sum_probs=39.9

Q ss_pred             CCEEEEEEEcCCCcchHH-----HHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCC
Q psy6566          21 KNIHFIMWDLGGQQSLRA-----AWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDI   92 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~-----~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~   92 (126)
                      +...+.+|||||......     +....+..+|.++++.|..-  +-. ....+..+ +.   .+.|+++|.||+|.
T Consensus       105 ~~~~~~l~DtPG~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~--~~~-d~~l~~~l-~~---~~k~~~~V~nK~D~  174 (400)
T d1tq4a_         105 NIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRF--KKN-DIDIAKAI-SM---MKKEFYFVRTKVDS  174 (400)
T ss_dssp             SCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCC--CHH-HHHHHHHH-HH---TTCEEEEEECCHHH
T ss_pred             CCCeEEEEeCCCcccccccHHHHHHHhhhhcceEEEEecCCCC--CHH-HHHHHHHH-HH---cCCCEEEEEeCccc
Confidence            445688999999644321     23334667888888876422  211 22223333 33   36899999999995

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.32  E-value=6.2e-06  Score=50.92  Aligned_cols=70  Identities=13%  Similarity=0.038  Sum_probs=41.0

Q ss_pred             EEEEEEEcCCCcchHHHHHh---h--ccCCcEEEEEEECCCc---ccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566          23 IHFIMWDLGGQQSLRAAWST---Y--YTNTEFVILVIDSTDR---ERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        23 ~~~~i~Dt~G~~~~~~~~~~---~--~~~~~~~l~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~   94 (126)
                      ..+.+.|++|+..+......   .  ....+.+++++|+...   ................   -..|.+++.||+|+..
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~---~~~~~ivvinK~D~~~  171 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR---LGATTIPALNKVDLLS  171 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH---HTSCEEEEECCGGGCC
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH---hCCCceeeeecccccc
Confidence            45889999999776443211   1  2245688999987532   2222221111111111   3579999999999876


Q ss_pred             C
Q psy6566          95 S   95 (126)
Q Consensus        95 ~   95 (126)
                      .
T Consensus       172 ~  172 (244)
T d1yrba1         172 E  172 (244)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=0.002  Score=37.43  Aligned_cols=77  Identities=13%  Similarity=0.101  Sum_probs=41.2

Q ss_pred             cCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHHHHhhcCcCc-ccCCceEEEEeeee
Q psy6566          45 TNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVEISNLLDLTS-IKKQQWHIQSCCAL  123 (126)
Q Consensus        45 ~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~Sa~  123 (126)
                      ..+..++.+.+......... ..++.....    ...++++++||+|+............+.... ......+++.+||+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~vSA~  171 (188)
T d1puia_          97 QSLQGLVVLMDIRHPLKDLD-QQMIEWAVD----SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSL  171 (188)
T ss_dssp             TTEEEEEEEEETTSCCCHHH-HHHHHHHHH----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTT
T ss_pred             hheeEEEEeecccccchhHH-HHHHHHhhh----ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEEeCC
Confidence            34556666666655433322 233333322    3578899999999876322222111111111 12234689999999


Q ss_pred             eCC
Q psy6566         124 TGE  126 (126)
Q Consensus       124 ~~~  126 (126)
                      +|.
T Consensus       172 ~g~  174 (188)
T d1puia_         172 KKQ  174 (188)
T ss_dssp             TTB
T ss_pred             CCC
Confidence            884

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.91  E-value=0.0016  Score=41.41  Aligned_cols=70  Identities=13%  Similarity=0.158  Sum_probs=43.8

Q ss_pred             CEEEEEEEcCCCcc-------------hHHHHHhhccCCcEEEEEE-ECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEE
Q psy6566          22 NIHFIMWDLGGQQS-------------LRAAWSTYYTNTEFVILVI-DSTDRERISLTKEELYKMLNHEDLSKAAVLIYA   87 (126)
Q Consensus        22 ~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~l~v~-d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~   87 (126)
                      -..+.++||||...             ...++..|+..++.+++++ +....-.-.....+.+.+ ..   ...++++|.
T Consensus       130 ~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~-~~---~~~r~i~Vi  205 (306)
T d1jwyb_         130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV-DP---EGKRTIGVI  205 (306)
T ss_dssp             SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH-CS---SCSSEEEEE
T ss_pred             CCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHh-Cc---CCCeEEEEE
Confidence            35689999999533             2356778899999866665 443322222233334433 22   356899999


Q ss_pred             ecCCCCCC
Q psy6566          88 NKQDIKNS   95 (126)
Q Consensus        88 nK~D~~~~   95 (126)
                      ||+|....
T Consensus       206 tk~D~~~~  213 (306)
T d1jwyb_         206 TKLDLMDK  213 (306)
T ss_dssp             ECTTSSCS
T ss_pred             eccccccc
Confidence            99998653

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.66  E-value=0.0033  Score=39.70  Aligned_cols=70  Identities=13%  Similarity=0.140  Sum_probs=44.3

Q ss_pred             CEEEEEEEcCCCcc-------------hHHHHHhhccCCcEE-EEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEE
Q psy6566          22 NIHFIMWDLGGQQS-------------LRAAWSTYYTNTEFV-ILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYA   87 (126)
Q Consensus        22 ~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~-l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~   87 (126)
                      ...+.++||||...             ...+...|+..++.+ ++|.+++..-+-.....+.+.+ ..   ...++++|.
T Consensus       124 ~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~-~~---~~~r~i~Vl  199 (299)
T d2akab1         124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV-DP---QGQRTIGVI  199 (299)
T ss_dssp             CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHH-CT---TCSSEEEEE
T ss_pred             CCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHh-Cc---CCCceeeEE
Confidence            34589999999421             235567778777754 5555665444444444444443 22   356899999


Q ss_pred             ecCCCCCC
Q psy6566          88 NKQDIKNS   95 (126)
Q Consensus        88 nK~D~~~~   95 (126)
                      ||+|....
T Consensus       200 tk~D~~~~  207 (299)
T d2akab1         200 TKLDLMDE  207 (299)
T ss_dssp             ECGGGSCT
T ss_pred             eccccccc
Confidence            99998754

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=95.87  E-value=0.0028  Score=40.92  Aligned_cols=93  Identities=16%  Similarity=0.146  Sum_probs=47.3

Q ss_pred             CEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHHH-
Q psy6566          22 NIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPVE-  100 (126)
Q Consensus        22 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~-  100 (126)
                      +..+.+.+|.|.-.-..   .+...+|.+++|.+...-+..+..+..   +++      ++-++|.||+|+........ 
T Consensus       146 g~d~iliEtvG~gq~e~---~i~~~aD~~l~v~~P~~Gd~iq~~k~g---i~e------~aDi~VvNKaD~~~~~~~~~~  213 (327)
T d2p67a1         146 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKG---LME------VADLIVINKDDGDNHTNVAIA  213 (327)
T ss_dssp             TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHH---HHH------HCSEEEECCCCTTCHHHHHHH
T ss_pred             CCCeEEEeeccccccch---hhhhccceEEEEecCCCchhhhhhchh---hhc------cccEEEEEeecccchHHHHHH
Confidence            34567777776533321   245679999998875433222211111   221      23378899999876321111 


Q ss_pred             ---HHhhcC--cCcccCCceEEEEeeeeeCC
Q psy6566         101 ---ISNLLD--LTSIKKQQWHIQSCCALTGE  126 (126)
Q Consensus       101 ---v~~~~~--~~~~~~~~~~~~~~Sa~~~~  126 (126)
                         ......  .........+++.|||++|+
T Consensus       214 ~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~  244 (327)
T d2p67a1         214 RHMYESALHILRRKYDEWQPRVLTCSALEKR  244 (327)
T ss_dssp             HHHHHHHHHHSCCSBTTBCCEEEECBGGGTB
T ss_pred             HHHHHHHhhhcccCCCCCcceeEEEEeeCCC
Confidence               111111  01112334579999999874

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.78  E-value=0.0036  Score=40.33  Aligned_cols=94  Identities=14%  Similarity=0.143  Sum_probs=51.7

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCCCCHH-
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNSMSPV-   99 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~-   99 (126)
                      .+..+.|..|.|.-.-...   ....+|..++|......+..+..         ....-.++-+++.||+|+.+..... 
T Consensus       142 ~g~d~iiiETVG~gq~e~~---~~~~~D~~v~v~~p~~GD~iQ~~---------k~gilE~aDi~vvNKaD~~~~~~~~~  209 (323)
T d2qm8a1         142 AGFDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQGI---------KKGIFELADMIAVNKADDGDGERRAS  209 (323)
T ss_dssp             TTCCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC------C---------CTTHHHHCSEEEEECCSTTCCHHHHH
T ss_pred             CCCCeEEEeehhhhhhhhh---hhcccceEEEEeeccchhhhhhh---------hhhHhhhhheeeEeccccccchHHHH
Confidence            4567888888886444333   34559999999987654432211         1111134558999999987642211 


Q ss_pred             HH----HhhcCcCc--ccCCceEEEEeeeeeCC
Q psy6566         100 EI----SNLLDLTS--IKKQQWHIQSCCALTGE  126 (126)
Q Consensus       100 ~v----~~~~~~~~--~~~~~~~~~~~Sa~~~~  126 (126)
                      ..    ...+....  .....-+++.+||++|+
T Consensus       210 ~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~  242 (323)
T d2qm8a1         210 AAASEYRAALHILTPPSATWTPPVVTISGLHGK  242 (323)
T ss_dssp             HHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTB
T ss_pred             HHHHHHHHHhhcccccccCCCCceEEEEecCCC
Confidence            11    11111111  12234579999999874

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.61  E-value=0.47  Score=27.96  Aligned_cols=67  Identities=16%  Similarity=0.156  Sum_probs=45.0

Q ss_pred             CCEEEEEEEcCCCcchHHHHHhhccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEE-EEEecCCCCC
Q psy6566          21 KNIHFIMWDLGGQQSLRAAWSTYYTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVL-IYANKQDIKN   94 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~D~~~   94 (126)
                      +...+.++|+++.....  ....+..+|.++++... +..++....+....+ +.   .+.|++ ++.|+.+..+
T Consensus       110 ~~~d~IiiD~~~~~~~~--~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~~-~~---~~~~~~giv~N~~~~~~  177 (237)
T d1g3qa_         110 DKFDFILIDCPAGLQLD--AMSAMLSGEEALLVTNP-EISCLTDTMKVGIVL-KK---AGLAILGFVLNRYGRSD  177 (237)
T ss_dssp             GGCSEEEEECCSSSSHH--HHHHHTTCSEEEEEECS-CHHHHHHHHHHHHHH-HH---TTCEEEEEEEEEETSCT
T ss_pred             hcCCEEEEccccccccc--chhhhhhhhcccccccc-cceecchhhHHHHHH-hh---hhhhhhhhhhccccccc
Confidence            34578999999875433  33356779999999875 355666666655434 33   456655 7899998654

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=90.86  E-value=0.83  Score=28.38  Aligned_cols=36  Identities=17%  Similarity=0.320  Sum_probs=26.8

Q ss_pred             EEEEEEEcCCCc-------chHHHHHhhccCCcEEEEEEECCC
Q psy6566          23 IHFIMWDLGGQQ-------SLRAAWSTYYTNTEFVILVIDSTD   58 (126)
Q Consensus        23 ~~~~i~Dt~G~~-------~~~~~~~~~~~~~~~~l~v~d~~~   58 (126)
                      ..+.+.|+||.-       .........++.||+++.|+|+.+
T Consensus        75 ~~i~~~DvaGLv~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          75 AFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             EEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccceeeeccccccccccccccHHHHHHHhhccceeEEEEeccC
Confidence            578999999832       223345556899999999999765

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=90.00  E-value=0.28  Score=29.16  Aligned_cols=67  Identities=13%  Similarity=0.160  Sum_probs=37.6

Q ss_pred             CCEEEEEEEcCCCcchHHH----HHhh--ccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCC
Q psy6566          21 KNIHFIMWDLGGQQSLRAA----WSTY--YTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKN   94 (126)
Q Consensus        21 ~~~~~~i~Dt~G~~~~~~~----~~~~--~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~   94 (126)
                      ++..+.++||+|.......    +..+  ....+-+++|.|.+....-.+....+.+.+      ++ -=++.+|.|-..
T Consensus        91 ~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~------~~-~~~I~TKlDe~~  163 (207)
T d1ls1a2          91 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV------GV-TGLVLTKLDGDA  163 (207)
T ss_dssp             HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHT------CC-CEEEEECGGGCS
T ss_pred             ccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhC------CC-CeeEEeecCccc
Confidence            4567899999996544321    1111  335788999999865432222222222222      11 136789999544

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=89.26  E-value=0.16  Score=31.46  Aligned_cols=35  Identities=11%  Similarity=0.095  Sum_probs=25.5

Q ss_pred             EEEEEEEcCCCcchHH-------HHHhhccCCcEEEEEEECC
Q psy6566          23 IHFIMWDLGGQQSLRA-------AWSTYYTNTEFVILVIDST   57 (126)
Q Consensus        23 ~~~~i~Dt~G~~~~~~-------~~~~~~~~~~~~l~v~d~~   57 (126)
                      ..+.+.|+||.-.-.+       .....++.||+++.|+|+.
T Consensus        66 a~i~~~Di~GLi~ga~~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          66 TTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             CEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             eeEEEEEccccCCCcccCCCccHHHHHHHHhccceEEEeecc
Confidence            3588999999633222       3345688999999999863

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=88.87  E-value=0.17  Score=31.87  Aligned_cols=36  Identities=22%  Similarity=0.196  Sum_probs=22.4

Q ss_pred             EEEEEEEcCCCcch-------HHHHHhhccCCcEEEEEEECCC
Q psy6566          23 IHFIMWDLGGQQSL-------RAAWSTYYTNTEFVILVIDSTD   58 (126)
Q Consensus        23 ~~~~i~Dt~G~~~~-------~~~~~~~~~~~~~~l~v~d~~~   58 (126)
                      ..++++|+||.-.-       .......++.+|++++|+|+.+
T Consensus        71 ~~i~~~D~pGli~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          71 IPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             EEEEEEECC---------------CCCSSTTCSEEEEEEETTC
T ss_pred             ccEEEEECCCcccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            57999999995321       1122234678999999999863

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.12  E-value=1  Score=26.75  Aligned_cols=65  Identities=12%  Similarity=0.077  Sum_probs=34.1

Q ss_pred             EEEEEcCCCcchHHHHHhh--------ccCCcEEEEEEECCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEecCCCCCC
Q psy6566          25 FIMWDLGGQQSLRAAWSTY--------YTNTEFVILVIDSTDRERISLTKEELYKMLNHEDLSKAAVLIYANKQDIKNS   95 (126)
Q Consensus        25 ~~i~Dt~G~~~~~~~~~~~--------~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~   95 (126)
                      ..+..+.|...-.......        .-..++++.++|+............+...++.   .+   +++.||+|+..+
T Consensus        92 ~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~---AD---~ivlNK~Dl~~~  164 (222)
T d1nija1          92 RLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY---AD---RILLTKTDVAGE  164 (222)
T ss_dssp             EEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHT---CS---EEEEECTTTCSC
T ss_pred             eeEEeecccchhhHHHHHHHhhhcccccccccchhhhhhhhhhhhhhhhhHHHHHHHHh---CC---cccccccccccH
Confidence            3566677764433332211        12357889999987643221111112222222   22   678999999764