Psyllid ID: psy6615

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------
MISPYYEHYKIREQSGFHKFSNCVWYIYGALLQQGGGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLTFPMMDTPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVNVCQGKPEYKWTVAMSLFSMHTHYRKKSVPNTLVVDLWTAGVKGLFSPMRGSINKHYYYSPTEFQDNPKLKGAIR
cccccccccccccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccccccHHHHHHccccEEEEEEcccHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHcccHHccccccccEEEEcccccccccccccccccccccEEEcccccccccccccccc
cccccccccccccccccccHHHHHHHHHHHHHHcccccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcccEEEEEcccccHHHHHHHccHccHHHHHHHHHHHHHHHccccccccccEEEcccHHHHHHHHHccccHHHHHHHHHHHccHHHHHHcccccccEEEEEcccccEEEccccccccccHHHEEHEEHHHccccccccc
mispyyehykireqsgfhkfsnCVWYIYGALLqqgggklpeadsgrlviGTWWLFVLVIVTTYCGNLVafltfpmmdtpvtNVNELLENKwrlswgmsefsTLHTTLQTarskgssvhsiCWQYKIVGVVNVLPAIvglnvvhpdipmisavnvcqgkpeyKWTVAMSLFSMHthyrkksvpntLVVDLWTAgvkglfspmrgsinkhyyysptefqdnpklkgair
MISPYYEHYKIREQSGFHKFSNCVWYIYGALLQQGGGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLTFPMMDTPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVNVCQGKPEYKWTVAMSLFSMHTHYRKKSVPNTLVVDLWTAGVKGLFSPMRGSINKHyyysptefqdnpklkgair
MISPYYEHYKIREQSGFHKFSNCVWYIYGALLQQGGGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLTFPMMDTPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVNVCQGKPEYKWTVAMSLFSMHTHYRKKSVPNTLVVDLWTAGVKGLFSPMRGSINKHYYYSPTEFQDNPKLKGAIR
****YYEHYKIREQSGFHKFSNCVWYIYGALLQQGGGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLTFPMMDTPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVNVCQGKPEYKWTVAMSLFSMHTHYRKKSVPNTLVVDLWTAGVKGLFSPMRGSINKHYYYS***************
MISPYY************KFSNCVWYIYGALLQQGGGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLTFPM*****TNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVNVCQGKPEYKWTVAMSLFSMHTHYRKKSVPNTLVVDLWTAGVKGLFSPMRGSINKHYYYSPTEFQDNP*******
MISPYYEHYKIREQSGFHKFSNCVWYIYGALLQQGGGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLTFPMMDTPVTNVNELLENKWRLSWGMSEFSTLHT*************SICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVNVCQGKPEYKWTVAMSLFSMHTHYRKKSVPNTLVVDLWTAGVKGLFSPMRGSINKHYYYSPTEFQDNPKLKGAIR
*ISPYYEHYKIREQSGFHKFSNCVWYIYGALLQQGGGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLTFPMMDTPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVNVCQGKPEYKWTVAMSLFSMHTHYRKKSVPNTLVVDLWTAGVKGLFSPMRGSINKHYYYSPTEFQDNPK******
ooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MISPYYEHYKIREQSGFHKFSNCVWYIYGALLQQGGGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLTFPMMDTPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVNVCQGKPEYKWTVAMSLFSMHTHYRKKSVPNTLVVDLWTAGVKGLFSPMRGSINKHYYYSPTEFQDNPKLKGAIR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query227 2.2.26 [Sep-21-2011]
P34299 962 Glutamate receptor 1 OS=C no N/A 0.418 0.098 0.356 8e-13
Q10914 977 Glutamate receptor 2 OS=C no N/A 0.427 0.099 0.382 3e-12
Q62640 1009 Glutamate receptor ionotr yes N/A 0.400 0.090 0.357 3e-12
P42260908 Glutamate receptor ionotr no N/A 0.392 0.098 0.355 4e-12
P39087908 Glutamate receptor ionotr yes N/A 0.392 0.098 0.355 4e-12
Q13002908 Glutamate receptor ionotr yes N/A 0.392 0.098 0.355 4e-12
Q61627 1009 Glutamate receptor ionotr yes N/A 0.400 0.090 0.347 7e-12
P22756 949 Glutamate receptor ionotr no N/A 0.286 0.068 0.446 7e-12
Q60934836 Glutamate receptor ionotr no N/A 0.286 0.077 0.446 8e-12
Q9ULK0 1009 Glutamate receptor ionotr no N/A 0.400 0.090 0.347 9e-12
>sp|P34299|GLR1_CAEEL Glutamate receptor 1 OS=Caenorhabditis elegans GN=glr-1 PE=1 SV=2 Back     alignment and function desciption
 Score = 73.9 bits (180), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 6/101 (5%)

Query: 2   ISPYYEHYKIREQSGF---HKFS--NCVWYIYGALLQQGGGKLPEADSGRLVIGTWWLFV 56
            SPY    +   + GF   + FS  NC+W+   A +QQG   LP + SGR+    WW F 
Sbjct: 615 FSPYEWRVEETSRGGFTISNDFSVYNCLWFTLAAFMQQGTDILPRSISGRIASSAWWFFT 674

Query: 57  LVIVTTYCGNLVAFLTFPMMDTPVTNVNELLENKWRLSWGM 97
           ++IV++Y  NL AFLT   M  P+ +V +L +   ++ +G+
Sbjct: 675 MIIVSSYTANLAAFLTLEKMQAPIESVEDLAKQS-KIKYGI 714
Non-NMDA (N-methyl-D-aspartate) ionotropic glutamate receptor. L-glutamate acts as an excitatory neurotransmitter at many synapses in the central nervous system. The postsynaptic actions of glutamate are mediated by a variety of receptors that are named according to their selective agonists. May contribute to a sensory discrimination between mechanical and chemical stimuli.
Caenorhabditis elegans (taxid: 6239)
>sp|Q10914|GLR2_CAEEL Glutamate receptor 2 OS=Caenorhabditis elegans GN=glr-2 PE=1 SV=3 Back     alignment and function description
>sp|Q62640|GRID1_RAT Glutamate receptor ionotropic, delta-1 OS=Rattus norvegicus GN=Grid1 PE=2 SV=1 Back     alignment and function description
>sp|P42260|GRIK2_RAT Glutamate receptor ionotropic, kainate 2 OS=Rattus norvegicus GN=Grik2 PE=1 SV=2 Back     alignment and function description
>sp|P39087|GRIK2_MOUSE Glutamate receptor ionotropic, kainate 2 OS=Mus musculus GN=Grik2 PE=1 SV=4 Back     alignment and function description
>sp|Q13002|GRIK2_HUMAN Glutamate receptor ionotropic, kainate 2 OS=Homo sapiens GN=GRIK2 PE=1 SV=1 Back     alignment and function description
>sp|Q61627|GRID1_MOUSE Glutamate receptor ionotropic, delta-1 OS=Mus musculus GN=Grid1 PE=1 SV=2 Back     alignment and function description
>sp|P22756|GRIK1_RAT Glutamate receptor ionotropic, kainate 1 OS=Rattus norvegicus GN=Grik1 PE=1 SV=3 Back     alignment and function description
>sp|Q60934|GRIK1_MOUSE Glutamate receptor ionotropic, kainate 1 OS=Mus musculus GN=Grik1 PE=2 SV=2 Back     alignment and function description
>sp|Q9ULK0|GRID1_HUMAN Glutamate receptor ionotropic, delta-1 OS=Homo sapiens GN=GRID1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query227
328718807 786 PREDICTED: glutamate receptor delta-2 su 0.480 0.138 0.609 2e-31
157108302 830 hypothetical protein AaeL_AAEL005012 [Ae 0.471 0.128 0.598 6e-30
242021389 861 glutamate receptor delta-1 subunit precu 0.466 0.123 0.566 2e-29
170046685 840 conserved hypothetical protein [Culex qu 0.471 0.127 0.551 8e-29
270001532 834 hypothetical protein TcasGA2_TC000374 [T 0.462 0.125 0.556 7e-28
189234767 848 PREDICTED: similar to conserved hypothet 0.462 0.123 0.556 7e-28
347963482 857 AGAP000256-PA [Anopheles gambiae str. PE 0.453 0.120 0.586 3e-26
307187134 801 Glutamate receptor delta-2 subunit [Camp 0.436 0.123 0.535 2e-23
345491042 908 PREDICTED: glutamate receptor, ionotropi 0.392 0.098 0.561 7e-23
328780359 803 PREDICTED: hypothetical protein LOC41062 0.440 0.124 0.53 1e-22
>gi|328718807|ref|XP_003246584.1| PREDICTED: glutamate receptor delta-2 subunit-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/110 (60%), Positives = 85/110 (77%), Gaps = 1/110 (0%)

Query: 1   MISPYYEHYKIREQSGFHKFSNCVWYIYGALLQQGGGKLPEADSGRLVIGTWWLFVLVIV 60
           ++SPYYE++ I  + G +   NC WY+YGALLQQGG  LP+ADSGRLV+GTWWLFVLVIV
Sbjct: 508 VLSPYYEYHNIPRKGGLNSPLNCFWYVYGALLQQGGAHLPDADSGRLVVGTWWLFVLVIV 567

Query: 61  TTYCGNLVAFLTFPMMDTPVTNVNELLENKWR-LSWGMSEFSTLHTTLQT 109
           TTY GNLVA+LTFP MD+ V+NV +L+  K +  SWG+ + S LH+ L T
Sbjct: 568 TTYSGNLVAYLTFPQMDSMVSNVADLMARKPQGYSWGIPKTSNLHSLLTT 617

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|157108302|ref|XP_001650166.1| hypothetical protein AaeL_AAEL005012 [Aedes aegypti] gi|108879339|gb|EAT43564.1| AAEL005012-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|242021389|ref|XP_002431127.1| glutamate receptor delta-1 subunit precursor, putative [Pediculus humanus corporis] gi|212516376|gb|EEB18389.1| glutamate receptor delta-1 subunit precursor, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|170046685|ref|XP_001850884.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167869380|gb|EDS32763.1| conserved hypothetical protein [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|270001532|gb|EEZ97979.1| hypothetical protein TcasGA2_TC000374 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|189234767|ref|XP_974691.2| PREDICTED: similar to conserved hypothetical protein [Tribolium castaneum] Back     alignment and taxonomy information
>gi|347963482|ref|XP_310862.5| AGAP000256-PA [Anopheles gambiae str. PEST] gi|333467178|gb|EAA06694.5| AGAP000256-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|307187134|gb|EFN72378.1| Glutamate receptor delta-2 subunit [Camponotus floridanus] Back     alignment and taxonomy information
>gi|345491042|ref|XP_001604783.2| PREDICTED: glutamate receptor, ionotropic kainate 2-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|328780359|ref|XP_394100.3| PREDICTED: hypothetical protein LOC410623 [Apis mellifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query227
FB|FBgn0259215838 Ir93a "Ionotropic receptor 93a 0.361 0.097 0.573 4.9e-21
WB|WBGene00001618 671 glr-7 [Caenorhabditis elegans 0.449 0.152 0.361 8.7e-15
FB|FBgn0038840 956 CG5621 [Drosophila melanogaste 0.339 0.080 0.441 3.3e-14
FB|FBgn0031634 934 Ir25a "Ionotropic receptor 25a 0.370 0.089 0.438 6.7e-14
UNIPROTKB|E1C2Q1869 GRIK4 "Uncharacterized protein 0.453 0.118 0.327 2.7e-13
FB|FBgn0036937 636 Ir76b "Ionotropic receptor 76b 0.387 0.138 0.391 2.7e-13
FB|FBgn0038837853 CG3822 [Drosophila melanogaste 0.325 0.086 0.426 3.3e-13
UNIPROTKB|F1MCW8751 F1MCW8 "Uncharacterized protei 0.453 0.137 0.327 3.7e-13
WB|WBGene00001612 962 glr-1 [Caenorhabditis elegans 0.511 0.120 0.317 6.4e-13
UNIPROTKB|F1S9S0 932 GRIK4 "Uncharacterized protein 0.453 0.110 0.327 6.7e-13
FB|FBgn0259215 Ir93a "Ionotropic receptor 93a" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 258 (95.9 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 47/82 (57%), Positives = 60/82 (73%)

Query:    16 GFHKFSNCVWYIYGALLQQGGGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLTFPM 75
             G     +C WYI+GALLQQGG  LP ADSGRLV+G WW+ V+V+VTTYCGNLVAFLTFP 
Sbjct:   578 GLSTVKSCFWYIFGALLQQGGMYLPTADSGRLVVGFWWIVVIVLVTTYCGNLVAFLTFPK 637

Query:    76 MDTPVTNVNELLENKWRLSWGM 97
                 V  +N+L ++K  + +G+
Sbjct:   638 FQPGVDYLNQLEDHKDIVQYGL 659
GO:0005886 "plasma membrane" evidence=ISS
GO:0005234 "extracellular-glutamate-gated ion channel activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA
GO:0004970 "ionotropic glutamate receptor activity" evidence=IEA
GO:0015276 "ligand-gated ion channel activity" evidence=ISM
GO:0050907 "detection of chemical stimulus involved in sensory perception" evidence=IEP
GO:0016021 "integral to membrane" evidence=ISM
WB|WBGene00001618 glr-7 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
FB|FBgn0038840 CG5621 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0031634 Ir25a "Ionotropic receptor 25a" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E1C2Q1 GRIK4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0036937 Ir76b "Ionotropic receptor 76b" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0038837 CG3822 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1MCW8 F1MCW8 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
WB|WBGene00001612 glr-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|F1S9S0 GRIK4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query227
pfam00060268 pfam00060, Lig_chan, Ligand-gated ion channel 2e-25
>gnl|CDD|215685 pfam00060, Lig_chan, Ligand-gated ion channel Back     alignment and domain information 
 Score = 99.7 bits (249), Expect = 2e-25
 Identities = 35/101 (34%), Positives = 60/101 (59%), Gaps = 2/101 (1%)

Query: 2   ISPYYEHYKIREQSGFHKFSNCVWYIYGALLQQGGGKLPEADSGRLVIGTWWLFVLVIVT 61
            SPY E     E+      SN +W+ +GAL+QQG  +LP + SGR+++G WW F L++++
Sbjct: 23  FSPY-EWRGPPEEPNQFTLSNSLWFSFGALVQQGHRELPRSLSGRILVGVWWFFALILLS 81

Query: 62  TYCGNLVAFLTFPMMDTPVTNVNELLENKWRLSWGMSEFST 102
           +Y  NL AFLT   M +P+ ++ +L +   ++ +G     +
Sbjct: 82  SYTANLAAFLTVERMQSPIQSLEDLAKQN-KIGYGTLRGGS 121

This family includes the four transmembrane regions of the ionotropic glutamate receptors and NMDA receptors. Length = 268

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 227
KOG1054|consensus 897 100.0
KOG4440|consensus 993 99.97
KOG1053|consensus 1258 99.96
KOG1052|consensus656 99.9
PF00060148 Lig_chan: Ligand-gated ion channel; InterPro: IPR0 99.58
smart00079134 PBPe Eukaryotic homologues of bacterial periplasmi 98.7
PF0788579 Ion_trans_2: Ion channel; InterPro: IPR013099 This 97.3
PF00497225 SBP_bac_3: Bacterial extracellular solute-binding 95.44
TIGR02995275 ectoine_ehuB ectoine/hydroxyectoine ABC transporte 94.34
PRK10797302 glutamate and aspartate transporter subunit; Provi 93.29
PLN03192 823 Voltage-dependent potassium channel; Provisional 91.98
KOG1419|consensus 654 91.63
KOG3713|consensus477 89.06
TIGR01096250 3A0103s03R lysine-arginine-ornithine-binding perip 88.95
PRK11260266 cystine transporter subunit; Provisional 88.13
PRK09495247 glnH glutamine ABC transporter periplasmic protein 88.05
KOG1418|consensus 433 86.83
PRK10537393 voltage-gated potassium channel; Provisional 86.05
PRK15007243 putative ABC transporter arginine-biding protein; 86.0
PRK10859 482 membrane-bound lytic transglycosylase F; Provision 85.19
cd00134218 PBPb Bacterial periplasmic transport systems use m 83.59
>KOG1054|consensus Back     alignment and domain information 
Probab=100.00  E-value=5.2e-46  Score=347.21  Aligned_cols=191  Identities=27%  Similarity=0.450  Sum_probs=166.6

Q ss_pred             CCCcccccc---Cc-----cCCCccchhhHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHhhhhcceeeEEeec
Q psy6615           2 ISPYYEHYK---IR-----EQSGFHKFSNCVWYIYGALLQQGGGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLTF   73 (227)
Q Consensus         2 ~sPy~~~~~---~~-----~~~~~~~l~~s~w~~~~~l~~qg~~~~Prs~s~Riv~~~W~lf~lilvasYTAnLaA~Lt~   73 (227)
                      |||||||..   ..     +..++|+++||+||++++|+|||++..|||.||||+.++||||+||++++||||||||||+
T Consensus       570 FSPYEwh~Ee~~rg~~t~~~~~NeFgifNsLWFsLgAFMQQG~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLTv  649 (897)
T KOG1054|consen  570 FSPYEWHTEEFERGRFTPSDPPNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV  649 (897)
T ss_pred             cCchheeccccccCCCCCCCCCccchhhHHHHHHHHHHHhcCCCCCccccccceeccchhhhhhhhhhhhhhHHHHHHhH
Confidence            899999842   11     1468999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcc--cccccccccccccccCCccccee
Q psy6615          74 PMMDTPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVG--VVNVLPAIVGLNVVHPDIPMISA  151 (227)
Q Consensus        74 ~~~~~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~--~~~v~~~~egv~~v~~d~pgi~~  151 (227)
                      +++.+||.++|||++|+ +|.||+.+++++..||+.|.   +++|++||.+|++.  .+++.++.|          ||+|
T Consensus       650 ErMvsPIESaEDLAkQt-eIaYGt~~~GSTkeFFr~Sk---iavy~kMW~yM~SaepsVFv~t~ae----------Gv~r  715 (897)
T KOG1054|consen  650 ERMVSPIESAEDLAKQT-EIAYGTLDSGSTKEFFRRSK---IAVYEKMWTYMKSAEPSVFVRTTAE----------GVAR  715 (897)
T ss_pred             HhhcCcchhHHHHhhcc-eeeeeecCCCchHHHHhhhh---HHHHHHHHHHHhcCCcceeeehhhh----------HHHH
Confidence            99999999999999997 99999999999999999997   78999999999964  578888888          7888


Q ss_pred             ecccCCCcEEEechhhhhhhhhhcccccCCCccccc----cceeccc-cCCCCcccccccceeee
Q psy6615         152 VNVCQGKPEYKWTVAMSLFSMHTHYRKKSVPNTLVV----DLWTAGV-KGLFSPMRGSINKHYYY  211 (227)
Q Consensus       152 v~~~~G~yAFi~es~~leY~~~~~~~~~~~~~~~~~----d~~~~~~-~~~~sp~r~~i~~~~~~  211 (227)
                      ||.++|+|||+.|+++.||   .+.||+|.  |..+    |..+.|. ...+|.+|+.+|-++++
T Consensus       716 VRksKGkyAfLLEsTmNey---~eqRkPCD--TMKVGgNLds~GYGiATp~Gsslr~~vNLAvLk  775 (897)
T KOG1054|consen  716 VRKSKGKYAFLLESTMNEY---IEQRKPCD--TMKVGGNLDSKGYGIATPKGSSLRNAVNLAVLK  775 (897)
T ss_pred             HHhcCCceEeehHhhhhhh---hhccCCcc--ceecccccCCcceeecCCCCcccccchhhhhhh
Confidence            9999999999999999999   77777643  3333    3333331 33459999999999854

>KOG4440|consensus Back     alignment and domain information
>KOG1053|consensus Back     alignment and domain information
>KOG1052|consensus Back     alignment and domain information
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory Back     alignment and domain information
>smart00079 PBPe Eukaryotic homologues of bacterial periplasmic substrate binding proteins Back     alignment and domain information
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] Back     alignment and domain information
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane Back     alignment and domain information
>TIGR02995 ectoine_ehuB ectoine/hydroxyectoine ABC transporter solute-binding protein Back     alignment and domain information
>PRK10797 glutamate and aspartate transporter subunit; Provisional Back     alignment and domain information
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>KOG1419|consensus Back     alignment and domain information
>KOG3713|consensus Back     alignment and domain information
>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein Back     alignment and domain information
>PRK11260 cystine transporter subunit; Provisional Back     alignment and domain information
>PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed Back     alignment and domain information
>KOG1418|consensus Back     alignment and domain information
>PRK10537 voltage-gated potassium channel; Provisional Back     alignment and domain information
>PRK15007 putative ABC transporter arginine-biding protein; Provisional Back     alignment and domain information
>PRK10859 membrane-bound lytic transglycosylase F; Provisional Back     alignment and domain information
>cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query227
3kg2_A823 Ampa Subtype Ionotropic Glutamate Receptor In Compl 3e-12
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With Competitive Antagonist Zk 200775 Length = 823 Back     alignment and structure 
Iteration: 1

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 41/65 (63%)
Query: 22  NCVWYIYGALLQQGGGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLTFPMMDTPVT 81
           N +W+  GA +QQG    P + SGR+V G WW F L+I+++Y  NL AFLT   M +P+ 
Sbjct: 566 NSLWFSLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIE 625
Query: 82  NVNEL 86
           +  +L
Sbjct: 626 SAEDL 630

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query227
3kg2_A823 Glutamate receptor 2; ION channel, membrane protei 1e-16
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} Length = 823 Back     alignment and structure
 Score = 77.5 bits (190), Expect = 1e-16
 Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 4/113 (3%)

Query: 12  REQSGFHKFSNCVWYIYGALLQQGGGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFL 71
            E +      N +W+  GA +QQG    P + SGR+V G WW F L+I+++Y  NL AFL
Sbjct: 556 SESTNEFGIFNSLWFSLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFL 615

Query: 72  TFPMMDTPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQY 124
           T   M +P+ +  +L +    +++G  +  +        R    +V    W Y
Sbjct: 616 TVERMVSPIESAEDLSKQTE-IAYGTLDSGSTKEFF---RRSKIAVFDKMWTY 664

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query227
3kg2_A823 Glutamate receptor 2; ION channel, membrane protei 99.94
1yae_A312 Glutamate receptor, ionotropic kainate 2; kainate 98.38
3g3k_A259 Glutamate receptor, ionotropic kainate 2; membrane 98.35
1pb7_A292 N-methyl-D-aspartate receptor subunit 1; ligand bi 98.07
2rc8_A294 Glutamate [NMDA] receptor subunit 3A; membrane pro 97.99
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 97.62
1mqi_A263 Glutamate receptor 2; GLUR2, ligand binding core, 97.62
4h33_A137 LMO2059 protein; bilayers, KVLM, lipidic cubic pha 97.61
2k1e_A103 Water soluble analogue of potassium channel, KCSA; 97.45
2a9h_A155 Voltage-gated potassium channel; potassium channel 97.36
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 97.35
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 97.32
2q67_A114 Potassium channel protein; inverted teepee, helix 97.07
2a5s_A284 N-methyl-D-aspartate receptor nmdar2A subunit, NMD 97.05
3ouf_A97 Potassium channel protein; ION channel, membrane, 97.03
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 96.99
2v3u_A265 Glutamate receptor delta-2 subunit; postsynaptic m 96.87
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 96.73
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 96.54
4gvo_A243 LMO2349 protein; structural genomics, IDP05245, L- 96.17
1xl4_A301 Inward rectifier potassium channel; integral membr 95.78
3um7_A309 Potassium channel subfamily K member 4; potassium 95.75
2qks_A321 KIR3.1-prokaryotic KIR channel chimera; G-protein 95.72
1ii5_A233 SLR1257 protein; membrane protein; HET: GLU; 1.60A 95.64
1p7b_A333 Integral membrane channel and cytosolic domains; t 95.59
1lnq_A336 MTHK channels, potassium channel related protein; 95.53
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 95.39
3kbr_A239 Cyclohexadienyl dehydratase; pseudomonas aeruginos 95.34
4h5g_A243 Amino acid ABC superfamily ATP binding cassette tr 95.24
3kzg_A237 Arginine 3RD transport system periplasmic binding 95.24
4f3p_A249 Glutamine-binding periplasmic protein; ssgcid, str 95.21
3del_B242 Arginine binding protein; alpha and beta protein ( 95.2
3hv1_A268 Polar amino acid ABC uptake transporter substrate 95.17
4gx0_A 565 TRKA domain protein; membrane protein, ION channel 95.11
3ukm_A280 Potassium channel subfamily K member 1; membrane p 94.94
2y7i_A229 STM4351; arginine-binding protein; HET: ARG; 1.90A 94.88
3k4u_A245 Binding component of ABC transporter; structural g 94.8
4i62_A269 Amino acid ABC transporter, periplasmic amino ACI 94.75
3ukm_A280 Potassium channel subfamily K member 1; membrane p 94.71
2nr1_A27 NR1 M2, M2; receptor, signal, postsynaptic membran 94.46
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 94.11
4eq9_A246 ABC transporter substrate-binding protein-amino A 94.08
3h7m_A234 Sensor protein; histidine kinase sensor domain, ki 93.68
4dz1_A259 DALS D-alanine transporter; D-alanine binding, per 93.48
3tql_A227 Arginine-binding protein; transport and binding pr 93.28
2pvu_A272 ARTJ; basic amino acid binding protein, ABC transp 93.05
2q88_A257 EHUB, putative ABC transporter amino acid-binding 92.98
3qax_A268 Probable ABC transporter arginine-binding protein; 92.66
3um7_A309 Potassium channel subfamily K member 4; potassium 92.64
2pyy_A228 Ionotropic glutamate receptor bacterial homologue; 92.62
3mpk_A267 Virulence sensor protein BVGS; venus flytrap, sens 92.02
2vha_A287 Periplasmic binding transport protein; periplasmic 91.98
1wdn_A226 GLNBP, glutamine binding protein; closed form, com 91.81
2yjp_A291 Putative ABC transporter, periplasmic binding Pro 91.62
1xt8_A292 Putative amino-acid transporter periplasmic solut 91.48
1lst_A239 Lysine, arginine, ornithine-binding protein; amino 90.03
3i6v_A232 Periplasmic His/Glu/Gln/Arg/opine family-binding; 86.55
2yln_A283 Putative ABC transporter, periplasmic binding Pro 84.78
2iee_A271 ORF2, probable ABC transporter extracellular-bindi 84.33
3sya_A340 G protein-activated inward rectifier potassium CH; 84.26
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} Back     alignment and structure
Probab=99.94  E-value=3.7e-29  Score=244.21  Aligned_cols=201  Identities=25%  Similarity=0.437  Sum_probs=153.4

Q ss_pred             CCCccccccCc---------cCCCccchhhHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHhhhhcceeeEEee
Q psy6615           2 ISPYYEHYKIR---------EQSGFHKFSNCVWYIYGALLQQGGGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLT   72 (227)
Q Consensus         2 ~sPy~~~~~~~---------~~~~~~~l~~s~w~~~~~l~~qg~~~~Prs~s~Riv~~~W~lf~lilvasYTAnLaA~Lt   72 (227)
                      ++||+|+....         .....+++.+++|+++++|++||.+..|++.++|+++++||||++|++++|||+|+|+||
T Consensus       537 ~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt  616 (823)
T 3kg2_A          537 FSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT  616 (823)
T ss_dssp             ----------------------CHHHHHHHHHHHTTTTSCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cChhhccCcccccccccccccccccccHHHHHHHHHHHHHhcCCCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            47888863211         134567899999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcc--cccccccccccccccCCcccce
Q psy6615          73 FPMMDTPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVG--VVNVLPAIVGLNVVHPDIPMIS  150 (227)
Q Consensus        73 ~~~~~~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~--~~~v~~~~egv~~v~~d~pgi~  150 (227)
                      +++..++|++++||++|+ ++++|++.++++..+|++++   .+.|++||++|+..  ...+.+.+|          |++
T Consensus       617 ~~~~~~~I~s~~dL~~~~-~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~  682 (823)
T 3kg2_A          617 VERMVSPIESAEDLSKQT-EIAYGTLDSGSTKEFFRRSK---IAVFDKMWTYMRSAEPSVFVRTTAE----------GVA  682 (823)
T ss_dssp             HHHHCCCCCSSHHHHHCC-SSEEECBSSSHHHHHHHHCC---CHHHHHHHHHHHHCSSCCCBSSHHH----------HHH
T ss_pred             ccccCCCCCCHHHHhhCC-CeeEEEEeCCcHHHHHHhcc---chHHHHHHHHHHhcCCccccCCHHH----------HHH
Confidence            999999999999999875 79999999999999999986   47899999999864  345667777          555


Q ss_pred             eecccCCCcEEEechhhhhhhhhhc-ccccCCCccccccceecc-ccCCCCcccccccceeeeCccccccCccc
Q psy6615         151 AVNVCQGKPEYKWTVAMSLFSMHTH-YRKKSVPNTLVVDLWTAG-VKGLFSPMRGSINKHYYYSPTEFQDNPKL  222 (227)
Q Consensus       151 ~v~~~~G~yAFi~es~~leY~~~~~-~~~~~~~~~~~~d~~~~~-~~~~~sp~r~~i~~~~~~~~~~~~~~~~~  222 (227)
                      +++..+|.|||++|.+.++|....+ |++..++..+....++.. +|+  ||||+.||+++    .+.+.+|.+
T Consensus       683 ~~~~~~~~~A~~~~~~~~~y~~~~~~c~l~~v~~~~~~~~~~~~~~k~--spl~~~~~~~i----l~l~e~G~~  750 (823)
T 3kg2_A          683 RVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKG--SSLGTPVNLAV----LKLSEQGLL  750 (823)
T ss_dssp             HHHTTTTSEEEEEEHHHHHHHHTSTTCCEEEESCCSSCEEECCEEETT--CSSHHHHHHHH----HHHHHTTHH
T ss_pred             HHhccCCceEEEechHHHHHHHhcCCCceEEccccccccceeEeecCC--ChHHHHHHHHH----HHHHhCCcH
Confidence            5554568899999999999987655 666666666655555554 455  99999999998    677766654
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1 Back     alignment and structure
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ... Back     alignment and structure
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A Back     alignment and structure
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Back     alignment and structure
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ... Back     alignment and structure
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A Back     alignment and structure
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Back     alignment and structure
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A* Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A Back     alignment and structure
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Back     alignment and structure
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Back     alignment and structure
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Back     alignment and structure
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Back     alignment and structure
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa} Back     alignment and structure
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A* Back     alignment and structure
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0 Back     alignment and structure
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei} Back     alignment and structure
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0 Back     alignment and structure
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311} Back     alignment and structure
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp} Back     alignment and structure
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0 Back     alignment and structure
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae} Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1 Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae} Back     alignment and structure
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0 Back     alignment and structure
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A Back     alignment and structure
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0 Back     alignment and structure
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A* Back     alignment and structure
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A* Back     alignment and structure
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A* Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme} Back     alignment and structure
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A Back     alignment and structure
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A* Back     alignment and structure
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A Back     alignment and structure
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae} Back     alignment and structure
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1 Back     alignment and structure
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P* Back     alignment and structure
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0 Back     alignment and structure
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A Back     alignment and structure
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis} Back     alignment and structure
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query227
d2a5sa1277 N-methyl-D-aspartate receptor subunit 1 {Rat (Ratt 97.98
d1r3jc_103 Potassium channel protein {Streptomyces coelicolor 97.83
d1mqia_260 Glutamate receptor ligand binding core {Rat (Rattu 97.61
d1pb7a_289 N-methyl-D-aspartate receptor subunit 1 {Rat (Ratt 97.52
d1xl4a2116 Inward rectifier potassium channel kirbac3.1 {Magn 96.93
d1lnqa280 Potassium channel-related protein MthK {Archaeon M 96.72
d1ii5a_226 Glutamate receptor ligand binding core {Synechocys 96.08
d1p7ba2116 Inward rectifier potassium channel Kirbac1.1 {Burk 96.01
d1xt8a1248 Putative amino-acid transporter CjaA {Campylobacte 95.15
d2f34a1246 Glutamate receptor ligand binding core {Rat (Rattu 94.33
d1wdna_223 Glutamine-binding protein {Escherichia coli [TaxId 93.68
d1lsta_238 Lysine-,arginine-,ornithine-binding (LAO) protein 90.89
>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: N-methyl-D-aspartate receptor subunit 1
species: Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]

Probab=97.98  E-value=9.7e-07  Score=73.58  Aligned_cols=106  Identities=13%  Similarity=0.193  Sum_probs=72.5

Q ss_pred             CceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCcccceeecccCCC-cEEEechhhhh
Q psy6615          91 WRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVNVCQGK-PEYKWTVAMSL  169 (227)
Q Consensus        91 ~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pgi~~v~~~~G~-yAFi~es~~le  169 (227)
                      .++++|++++++.+.+|++.       +.+++..+..  ..+.+.++++++          |.  +|+ +||++|.++++
T Consensus       154 ~~~~~g~v~~~~~~~~~~~~-------~~~~~~~~~~--~~~~~~~~~~~~----------l~--~G~~Da~i~d~~~~~  212 (277)
T d2a5sa1         154 PPFRFGTVPNGSTERNIRNN-------YPYMHQYMTR--FNQRGVEDALVS----------LK--TGKLDAFIYDAAVLN  212 (277)
T ss_dssp             SCCCEECCTTSHHHHHHHTT-------CHHHHHHHGG--GCCSSHHHHHHH----------HH--TTSCSEEEEEHHHHH
T ss_pred             hheeeeccchhhHHHHHHHh-------hhhhcceEEE--ecCCCHHHHHHH----------HH--cCCcceecccHHHHH
Confidence            46799999999999999987       4445555543  234556664444          43  344 79999999999


Q ss_pred             hhhhhc--ccccCCCc--cccccceecc-ccCCCCcccccccceeeeCccccccCcccc
Q psy6615         170 FSMHTH--YRKKSVPN--TLVVDLWTAG-VKGLFSPMRGSINKHYYYSPTEFQDNPKLK  223 (227)
Q Consensus       170 Y~~~~~--~~~~~~~~--~~~~d~~~~~-~~~~~sp~r~~i~~~~~~~~~~~~~~~~~~  223 (227)
                      |.+..+  |++..++.  .+....++.+ +|+  ||||+.||+++    .+.+++|.++
T Consensus       213 y~~~~~~~~~l~~~~~~~~~~~~~ygia~~k~--s~l~~~in~al----~~l~~~G~~~  265 (277)
T d2a5sa1         213 YKAGRDEGCKLVTIGSGYIFATTGYGIALQKG--SPWKRQIDLAL----LQFVGDGEME  265 (277)
T ss_dssp             HHHHTCTTSCEEEEECCCGGGCEEECCEEETT--CTTHHHHHHHH----HHHHHHTHHH
T ss_pred             HHHhhCCCCcEEEecCCCCcCcceEEEEEeCC--hHHHHHHHHHH----HHHHHCCHHH
Confidence            987654  33333332  2333445444 455  89999999999    8888887764
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR2 [TaxId: 10116]} Back     information, alignment and structure
>d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Back     information, alignment and structure
>d1ii5a_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]} Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d2f34a1 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR5 [TaxId: 10116]} Back     information, alignment and structure
>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure