Psyllid ID: psy6623
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 262 | 2.2.26 [Sep-21-2011] | |||||||
| P38404 | 354 | Guanine nucleotide-bindin | N/A | N/A | 0.740 | 0.548 | 0.974 | 1e-111 | |
| P30683 | 354 | Guanine nucleotide-bindin | N/A | N/A | 0.740 | 0.548 | 0.938 | 1e-108 | |
| P51877 | 354 | Guanine nucleotide-bindin | N/A | N/A | 0.740 | 0.548 | 0.938 | 1e-108 | |
| P16378 | 354 | Guanine nucleotide-bindin | yes | N/A | 0.732 | 0.542 | 0.947 | 1e-107 | |
| P53359 | 355 | Guanine nucleotide-bindin | N/A | N/A | 0.725 | 0.535 | 0.947 | 1e-106 | |
| O15976 | 357 | Guanine nucleotide-bindin | N/A | N/A | 0.751 | 0.551 | 0.908 | 1e-104 | |
| P51875 | 354 | Guanine nucleotide-bindin | yes | N/A | 0.763 | 0.564 | 0.88 | 1e-103 | |
| P10825 | 354 | Guanine nucleotide-bindin | N/A | N/A | 0.732 | 0.542 | 0.848 | 1e-96 | |
| P09471 | 354 | Guanine nucleotide-bindin | no | N/A | 0.732 | 0.542 | 0.859 | 1e-96 | |
| P08239 | 354 | Guanine nucleotide-bindin | yes | N/A | 0.732 | 0.542 | 0.859 | 1e-96 |
| >sp|P38404|GNAO_LOCMI Guanine nucleotide-binding protein G(o) subunit alpha OS=Locusta migratoria PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 399 bits (1026), Expect = e-111, Method: Compositional matrix adjust.
Identities = 189/194 (97%), Positives = 192/194 (98%)
Query: 9 TDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLD 68
TDAKMVFDVIQRMEDTEPFSEELL+AMKRLW DSGVQECFGRSNEYQLNDSAKYFLDDLD
Sbjct: 102 TDAKMVFDVIQRMEDTEPFSEELLAAMKRLWADSGVQECFGRSNEYQLNDSAKYFLDDLD 161
Query: 69 RLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTA 128
RLGAK+YQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTA
Sbjct: 162 RLGAKDYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTA 221
Query: 129 IIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKK 188
IIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKK
Sbjct: 222 IIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKK 281
Query: 189 SPLTICFPEYAGKR 202
SPLTICFPEYAG +
Sbjct: 282 SPLTICFPEYAGAQ 295
|
Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The G(o) protein function is not clear. Locusta migratoria (taxid: 7004) |
| >sp|P30683|GNAO_LYMST Guanine nucleotide-binding protein G(o) subunit alpha OS=Lymnaea stagnalis PE=2 SV=3 | Back alignment and function description |
|---|
Score = 390 bits (1001), Expect = e-108, Method: Compositional matrix adjust.
Identities = 182/194 (93%), Positives = 189/194 (97%)
Query: 9 TDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLD 68
+DAKMV DVI RMEDTEPFSEELL+AMKRLW+DSGVQEC GR+NEYQLNDSAKYFLDDLD
Sbjct: 102 SDAKMVLDVIARMEDTEPFSEELLAAMKRLWVDSGVQECLGRANEYQLNDSAKYFLDDLD 161
Query: 69 RLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTA 128
RLGAK+Y PTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTA
Sbjct: 162 RLGAKDYMPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTA 221
Query: 129 IIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKK 188
IIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFT+TSIILFLNKKDLFEEKIKK
Sbjct: 222 IIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTETSIILFLNKKDLFEEKIKK 281
Query: 189 SPLTICFPEYAGKR 202
SPLTICFPEY GK+
Sbjct: 282 SPLTICFPEYTGKQ 295
|
Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The G(o) protein function is not clear. Lymnaea stagnalis (taxid: 6523) |
| >sp|P51877|GNAO_HELTI Guanine nucleotide-binding protein G(o) subunit alpha OS=Helisoma trivolvis PE=2 SV=2 | Back alignment and function description |
|---|
Score = 389 bits (1000), Expect = e-108, Method: Compositional matrix adjust.
Identities = 182/194 (93%), Positives = 189/194 (97%)
Query: 9 TDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLD 68
+DAKMV DVI RMEDTEPFSEELL+AMKRLW+DSGVQEC GR+NEYQLNDSAKYFLDDLD
Sbjct: 102 SDAKMVLDVIARMEDTEPFSEELLAAMKRLWVDSGVQECLGRANEYQLNDSAKYFLDDLD 161
Query: 69 RLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTA 128
RLGAK+Y PTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTA
Sbjct: 162 RLGAKDYMPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTA 221
Query: 129 IIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKK 188
IIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFT+TSIILFLNKKDLFEEKIKK
Sbjct: 222 IIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTETSIILFLNKKDLFEEKIKK 281
Query: 189 SPLTICFPEYAGKR 202
SPLTICFPEY GK+
Sbjct: 282 SPLTICFPEYTGKQ 295
|
Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The G(o) protein function is not clear. Helisoma trivolvis (taxid: 283763) |
| >sp|P16378|GNAO_DROME Guanine nucleotide-binding protein G(o) subunit alpha 47A OS=Drosophila melanogaster GN=G-oalpha47A PE=1 SV=1 | Back alignment and function description |
|---|
Score = 386 bits (992), Expect = e-107, Method: Compositional matrix adjust.
Identities = 182/192 (94%), Positives = 187/192 (97%)
Query: 9 TDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLD 68
+DAKMVFDV QRM DTEPFSEELL+AMKRLW D+GVQECF RSNEYQLNDSAKYFLDDLD
Sbjct: 102 SDAKMVFDVCQRMHDTEPFSEELLAAMKRLWQDAGVQECFSRSNEYQLNDSAKYFLDDLD 161
Query: 69 RLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTA 128
RLGAK+YQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTA
Sbjct: 162 RLGAKDYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTA 221
Query: 129 IIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKK 188
IIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI+K
Sbjct: 222 IIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIRK 281
Query: 189 SPLTICFPEYAG 200
SPLTICFPEY G
Sbjct: 282 SPLTICFPEYTG 293
|
Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. Plays a role in glial cell differentiation during embryogenesis; loco, G-ialpha65A and the G-protein coupled receptor, moody, are required in the surface glia to achieve effective insulation of the nerve cord. Drosophila melanogaster (taxid: 7227) |
| >sp|P53359|GNAO_MANSE Guanine nucleotide-binding protein G(o) subunit alpha OS=Manduca sexta PE=2 SV=2 | Back alignment and function description |
|---|
Score = 383 bits (984), Expect = e-106, Method: Compositional matrix adjust.
Identities = 181/191 (94%), Positives = 188/191 (98%), Gaps = 1/191 (0%)
Query: 9 TDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLD 68
+D KMVFDVIQRMEDTEPFSEELL+AMKRLW D+GVQECFGRSNEYQLNDSAKYFLDDLD
Sbjct: 102 SDGKMVFDVIQRMEDTEPFSEELLAAMKRLWADAGVQECFGRSNEYQLNDSAKYFLDDLD 161
Query: 69 RLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVG-GQRSERKKWIHCFEDVT 127
RLGA++YQPTE+DILRTRVKTTGIVEVHFSFKNLNFKLFDVG GQRSERKKWIHCFEDVT
Sbjct: 162 RLGARDYQPTEEDILRTRVKTTGIVEVHFSFKNLNFKLFDVGRGQRSERKKWIHCFEDVT 221
Query: 128 AIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK 187
AIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI+
Sbjct: 222 AIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIR 281
Query: 188 KSPLTICFPEY 198
KSPLTICFPEY
Sbjct: 282 KSPLTICFPEY 292
|
Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The G(o) protein function is not clear. Manduca sexta (taxid: 7130) |
| >sp|O15976|GNAO_MIZYE Guanine nucleotide-binding protein G(o) subunit alpha OS=Mizuhopecten yessoensis GN=SCGOA PE=2 SV=3 | Back alignment and function description |
|---|
Score = 379 bits (972), Expect = e-104, Method: Compositional matrix adjust.
Identities = 179/197 (90%), Positives = 187/197 (94%)
Query: 9 TDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLD 68
+DAK+V DVI RMEDTEPFSEELL+AMKRLW D+GVQECFGRSNEYQLNDSAKYFLDDLD
Sbjct: 105 SDAKIVLDVIARMEDTEPFSEELLAAMKRLWTDTGVQECFGRSNEYQLNDSAKYFLDDLD 164
Query: 69 RLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTA 128
RLG+K+Y PTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTA
Sbjct: 165 RLGSKDYMPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTA 224
Query: 129 IIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKK 188
IIFCVAMSEYDQVLHEDETTNRMQESLKLFD+ICNNKWFTDTSIILFLNKKDLFEEKIKK
Sbjct: 225 IIFCVAMSEYDQVLHEDETTNRMQESLKLFDNICNNKWFTDTSIILFLNKKDLFEEKIKK 284
Query: 189 SPLTICFPEYAGKRPGE 205
S LTICF EY G + E
Sbjct: 285 SSLTICFNEYTGNQTYE 301
|
Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The G(o) protein function is not clear. Mizuhopecten yessoensis (taxid: 6573) |
| >sp|P51875|GNAO_CAEEL Guanine nucleotide-binding protein G(o) subunit alpha OS=Caenorhabditis elegans GN=goa-1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 376 bits (965), Expect = e-103, Method: Compositional matrix adjust.
Identities = 176/200 (88%), Positives = 188/200 (94%)
Query: 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKY 62
G++ DAK+V DV+ RMEDTEPFSEELLS+MKRLW D+GVQ+CF RSNEYQLNDSAKY
Sbjct: 96 GSADREVDAKLVMDVVARMEDTEPFSEELLSSMKRLWGDAGVQDCFSRSNEYQLNDSAKY 155
Query: 63 FLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHC 122
FLDDL+RLG YQPTEQDILRTRVKTTGIVEVHF+FKNLNFKLFDVGGQRSERKKWIHC
Sbjct: 156 FLDDLERLGEAIYQPTEQDILRTRVKTTGIVEVHFTFKNLNFKLFDVGGQRSERKKWIHC 215
Query: 123 FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182
FEDVTAIIFCVAMSEYDQVLHEDETTNRM ESLKLFDSICNNKWFTDTSIILFLNKKDLF
Sbjct: 216 FEDVTAIIFCVAMSEYDQVLHEDETTNRMHESLKLFDSICNNKWFTDTSIILFLNKKDLF 275
Query: 183 EEKIKKSPLTICFPEYAGKR 202
EEKIKKSPLTICFPEY+G++
Sbjct: 276 EEKIKKSPLTICFPEYSGRQ 295
|
Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The G(o) protein function is not clear. Polarity determinants (par genes) may regulate lin-5/gpr-1/gpr-2/goa-1 locally to create the asymmetric forces that drive spindle movement. Caenorhabditis elegans (taxid: 6239) |
| >sp|P10825|GNAO_XENLA Guanine nucleotide-binding protein G(o) subunit alpha OS=Xenopus laevis GN=gna0 PE=2 SV=5 | Back alignment and function description |
|---|
Score = 353 bits (905), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 163/192 (84%), Positives = 176/192 (91%)
Query: 9 TDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLD 68
DAKMV DV+ RMEDTEP+S ELLSAM RLW DSG+QECF RS EYQLNDSAKY+LD LD
Sbjct: 102 ADAKMVCDVVSRMEDTEPYSPELLSAMVRLWADSGIQECFNRSREYQLNDSAKYYLDSLD 161
Query: 69 RLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTA 128
R+GA +YQPTEQDILRTRVKTTGIVE HF+FKNL+F+LFDVGGQRSERKKW HCFEDVTA
Sbjct: 162 RIGAPDYQPTEQDILRTRVKTTGIVETHFTFKNLHFRLFDVGGQRSERKKWWHCFEDVTA 221
Query: 129 IIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKK 188
IIFCVA++ YDQVLHEDETTNRM ESLKLFDSICNNKWFTDTSIILFLNKKD+F+EKIK
Sbjct: 222 IIFCVALTGYDQVLHEDETTNRMHESLKLFDSICNNKWFTDTSIILFLNKKDIFQEKIKS 281
Query: 189 SPLTICFPEYAG 200
SPLTICFPEY G
Sbjct: 282 SPLTICFPEYTG 293
|
Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The G(o) protein function is not clear. Xenopus laevis (taxid: 8355) |
| >sp|P09471|GNAO_HUMAN Guanine nucleotide-binding protein G(o) subunit alpha OS=Homo sapiens GN=GNAO1 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 353 bits (905), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 165/192 (85%), Positives = 175/192 (91%)
Query: 9 TDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLD 68
DAKMV DV+ RMEDTEPFS ELLSAM RLW DSG+QECF RS EYQLNDSAKY+LD LD
Sbjct: 102 ADAKMVCDVVSRMEDTEPFSAELLSAMMRLWGDSGIQECFNRSREYQLNDSAKYYLDSLD 161
Query: 69 RLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTA 128
R+GA +YQPTEQDILRTRVKTTGIVE HF+FKNL+F+LFDVGGQRSERKKWIHCFEDVTA
Sbjct: 162 RIGAADYQPTEQDILRTRVKTTGIVETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTA 221
Query: 129 IIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKK 188
IIFCVA+S YDQVLHEDETTNRM ESL LFDSICNNK+F DTSIILFLNKKDLF EKIKK
Sbjct: 222 IIFCVALSGYDQVLHEDETTNRMHESLMLFDSICNNKFFIDTSIILFLNKKDLFGEKIKK 281
Query: 189 SPLTICFPEYAG 200
SPLTICFPEY G
Sbjct: 282 SPLTICFPEYTG 293
|
Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The G(o) protein function is not clear. Stimulated by RGS14. Homo sapiens (taxid: 9606) |
| >sp|P08239|GNAO_BOVIN Guanine nucleotide-binding protein G(o) subunit alpha OS=Bos taurus GN=GNAO1 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 352 bits (904), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 165/192 (85%), Positives = 175/192 (91%)
Query: 9 TDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLD 68
DAKMV DV+ RMEDTEPFS ELLSAM RLW DSG+QECF RS EYQLNDSAKY+LD LD
Sbjct: 102 ADAKMVCDVVSRMEDTEPFSPELLSAMMRLWGDSGIQECFNRSREYQLNDSAKYYLDSLD 161
Query: 69 RLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTA 128
R+GA +YQPTEQDILRTRVKTTGIVE HF+FKNL+F+LFDVGGQRSERKKWIHCFEDVTA
Sbjct: 162 RIGAADYQPTEQDILRTRVKTTGIVETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTA 221
Query: 129 IIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKK 188
IIFCVA+S YDQVLHEDETTNRM ESL LFDSICNNK+F DTSIILFLNKKDLF EKIKK
Sbjct: 222 IIFCVALSGYDQVLHEDETTNRMHESLMLFDSICNNKFFIDTSIILFLNKKDLFGEKIKK 281
Query: 189 SPLTICFPEYAG 200
SPLTICFPEY G
Sbjct: 282 SPLTICFPEYTG 293
|
Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The G(o) protein function is not clear. Stimulated by RGS14. Bos taurus (taxid: 9913) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 262 | ||||||
| 585173 | 354 | RecName: Full=Guanine nucleotide-binding | 0.740 | 0.548 | 0.974 | 1e-109 | |
| 307176763 | 354 | Guanine nucleotide-binding protein G(o) | 0.740 | 0.548 | 0.963 | 1e-108 | |
| 242015524 | 356 | Guanine nucleotide-binding protein G(O) | 0.744 | 0.547 | 0.953 | 1e-108 | |
| 91083543 | 354 | PREDICTED: similar to Guanine nucleotide | 0.736 | 0.545 | 0.963 | 1e-108 | |
| 91083541 | 354 | PREDICTED: similar to Guanine nucleotide | 0.736 | 0.545 | 0.963 | 1e-107 | |
| 307202998 | 302 | Guanine nucleotide-binding protein G(o) | 0.740 | 0.642 | 0.963 | 1e-107 | |
| 216548700 | 354 | guanine nucleotide-binding protein G(o) | 0.740 | 0.548 | 0.958 | 1e-107 | |
| 321461127 | 354 | guanine nucleotide-binding protein G(o) | 0.736 | 0.545 | 0.963 | 1e-107 | |
| 340726576 | 354 | PREDICTED: guanine nucleotide-binding pr | 0.736 | 0.545 | 0.958 | 1e-107 | |
| 290563180 | 354 | G protein alpha subunit Go isoform 2 [Bo | 0.740 | 0.548 | 0.948 | 1e-107 |
| >gi|585173|sp|P38404.1|GNAO_LOCMI RecName: Full=Guanine nucleotide-binding protein G(o) subunit alpha | Back alignment and taxonomy information |
|---|
Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust.
Identities = 189/194 (97%), Positives = 192/194 (98%)
Query: 9 TDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLD 68
TDAKMVFDVIQRMEDTEPFSEELL+AMKRLW DSGVQECFGRSNEYQLNDSAKYFLDDLD
Sbjct: 102 TDAKMVFDVIQRMEDTEPFSEELLAAMKRLWADSGVQECFGRSNEYQLNDSAKYFLDDLD 161
Query: 69 RLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTA 128
RLGAK+YQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTA
Sbjct: 162 RLGAKDYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTA 221
Query: 129 IIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKK 188
IIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKK
Sbjct: 222 IIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKK 281
Query: 189 SPLTICFPEYAGKR 202
SPLTICFPEYAG +
Sbjct: 282 SPLTICFPEYAGAQ 295
|
Source: Locusta migratoria Species: Locusta migratoria Genus: Locusta Family: Acrididae Order: Orthoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307176763|gb|EFN66163.1| Guanine nucleotide-binding protein G(o) subunit alpha [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 187/194 (96%), Positives = 192/194 (98%)
Query: 9 TDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLD 68
TDAKMVFDVIQRMEDTEPFSEELL+AMKRLW D+GVQECFGRSNEYQLNDSAKYFLDDLD
Sbjct: 102 TDAKMVFDVIQRMEDTEPFSEELLAAMKRLWSDNGVQECFGRSNEYQLNDSAKYFLDDLD 161
Query: 69 RLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTA 128
RLGA+EYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTA
Sbjct: 162 RLGAREYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTA 221
Query: 129 IIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKK 188
IIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI+K
Sbjct: 222 IIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIRK 281
Query: 189 SPLTICFPEYAGKR 202
SPLTICFPEYAG +
Sbjct: 282 SPLTICFPEYAGAQ 295
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242015524|ref|XP_002428403.1| Guanine nucleotide-binding protein G(O) subunit alpha, putative [Pediculus humanus corporis] gi|212513015|gb|EEB15665.1| Guanine nucleotide-binding protein G(O) subunit alpha, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust.
Identities = 186/195 (95%), Positives = 192/195 (98%)
Query: 8 TTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDL 67
+ DAKMVFDVIQRMEDTEPFSEELL+AMKRLW+D GVQECFGRSNEYQLNDSAKYFLDDL
Sbjct: 103 SADAKMVFDVIQRMEDTEPFSEELLTAMKRLWMDVGVQECFGRSNEYQLNDSAKYFLDDL 162
Query: 68 DRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVT 127
DRLGAK+YQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVT
Sbjct: 163 DRLGAKDYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVT 222
Query: 128 AIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK 187
AIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK
Sbjct: 223 AIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK 282
Query: 188 KSPLTICFPEYAGKR 202
KSPLTICFPEY+G +
Sbjct: 283 KSPLTICFPEYSGAQ 297
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91083543|ref|XP_975838.1| PREDICTED: similar to Guanine nucleotide-binding protein G(o) subunit alpha isoform 3 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust.
Identities = 186/193 (96%), Positives = 190/193 (98%)
Query: 10 DAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDR 69
D KMVFDVIQRMEDTEPFSEELL+AMKRLW DSGVQECFGRSNEYQLNDSAKYFLDDLDR
Sbjct: 103 DGKMVFDVIQRMEDTEPFSEELLAAMKRLWADSGVQECFGRSNEYQLNDSAKYFLDDLDR 162
Query: 70 LGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAI 129
LGAK+YQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAI
Sbjct: 163 LGAKDYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAI 222
Query: 130 IFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 189
IFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI+KS
Sbjct: 223 IFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIRKS 282
Query: 190 PLTICFPEYAGKR 202
PLTICFPEYAG +
Sbjct: 283 PLTICFPEYAGAQ 295
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91083541|ref|XP_966421.1| PREDICTED: similar to Guanine nucleotide-binding protein G(o) subunit alpha isoform 1 [Tribolium castaneum] gi|270007805|gb|EFA04253.1| hypothetical protein TcasGA2_TC014543 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 186/193 (96%), Positives = 190/193 (98%)
Query: 10 DAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDR 69
D KMVFDVIQRMEDTEPFSEELL+AMKRLW DSGVQECFGRSNEYQLNDSAKYFLDDLDR
Sbjct: 103 DGKMVFDVIQRMEDTEPFSEELLAAMKRLWADSGVQECFGRSNEYQLNDSAKYFLDDLDR 162
Query: 70 LGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAI 129
LGAK+YQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAI
Sbjct: 163 LGAKDYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAI 222
Query: 130 IFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 189
IFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI+KS
Sbjct: 223 IFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIRKS 282
Query: 190 PLTICFPEYAGKR 202
PLTICFPEYAG +
Sbjct: 283 PLTICFPEYAGAQ 295
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307202998|gb|EFN82214.1| Guanine nucleotide-binding protein G(o) subunit alpha [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 187/194 (96%), Positives = 192/194 (98%)
Query: 9 TDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLD 68
TDAKMVFDVIQRMEDTEPFSEELL+AMKRLW D+GVQECFGRSNEYQLNDSAKYFLDDLD
Sbjct: 50 TDAKMVFDVIQRMEDTEPFSEELLAAMKRLWSDNGVQECFGRSNEYQLNDSAKYFLDDLD 109
Query: 69 RLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTA 128
RLGA+EYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTA
Sbjct: 110 RLGAREYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTA 169
Query: 129 IIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKK 188
IIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI+K
Sbjct: 170 IIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIRK 229
Query: 189 SPLTICFPEYAGKR 202
SPLTICFPEYAG +
Sbjct: 230 SPLTICFPEYAGAQ 243
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|216548700|ref|NP_001135854.1| guanine nucleotide-binding protein G(o) subunit alpha [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 186/194 (95%), Positives = 190/194 (97%)
Query: 9 TDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLD 68
TDAKMVF VIQRMEDTEPFSEELLSAMKRLW D+GVQ+CFGRSNEYQLNDSAKYFLDDLD
Sbjct: 102 TDAKMVFGVIQRMEDTEPFSEELLSAMKRLWADAGVQDCFGRSNEYQLNDSAKYFLDDLD 161
Query: 69 RLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTA 128
RLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTA
Sbjct: 162 RLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTA 221
Query: 129 IIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKK 188
IIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI+K
Sbjct: 222 IIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIRK 281
Query: 189 SPLTICFPEYAGKR 202
SPLTICF EYAG +
Sbjct: 282 SPLTICFAEYAGAQ 295
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|321461127|gb|EFX72162.1| guanine nucleotide-binding protein G(o) subunit alpha 1 [Daphnia pulex] | Back alignment and taxonomy information |
|---|
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 186/193 (96%), Positives = 189/193 (97%)
Query: 10 DAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDR 69
DAKMV DVI RMEDTEPFSEELL+AMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDR
Sbjct: 103 DAKMVMDVISRMEDTEPFSEELLAAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDR 162
Query: 70 LGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAI 129
LGAK+YQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAI
Sbjct: 163 LGAKDYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAI 222
Query: 130 IFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 189
IFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS
Sbjct: 223 IFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 282
Query: 190 PLTICFPEYAGKR 202
PLTICFPEY G +
Sbjct: 283 PLTICFPEYTGAQ 295
|
Source: Daphnia pulex Species: Daphnia pulex Genus: Daphnia Family: Daphniidae Order: Diplostraca Class: Branchiopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340726576|ref|XP_003401632.1| PREDICTED: guanine nucleotide-binding protein G(o) subunit alpha-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 185/193 (95%), Positives = 190/193 (98%)
Query: 10 DAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDR 69
DAKMVFDVIQRMEDTEPFSEELL+AM RLW DSGVQECFGRSNEYQLNDSAKYFLDDLDR
Sbjct: 103 DAKMVFDVIQRMEDTEPFSEELLAAMNRLWADSGVQECFGRSNEYQLNDSAKYFLDDLDR 162
Query: 70 LGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAI 129
LGA++YQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAI
Sbjct: 163 LGARDYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAI 222
Query: 130 IFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 189
IFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI+KS
Sbjct: 223 IFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIRKS 282
Query: 190 PLTICFPEYAGKR 202
PLTICFPEYAG +
Sbjct: 283 PLTICFPEYAGAQ 295
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|290563180|ref|NP_001166852.1| G protein alpha subunit Go isoform 2 [Bombyx mori] gi|283536460|gb|ADB25317.1| guanine nucleotide-binding protein G(o) subunit alpha 1 isoform 2 [Bombyx mori] | Back alignment and taxonomy information |
|---|
Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust.
Identities = 184/194 (94%), Positives = 190/194 (97%)
Query: 9 TDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLD 68
+D KMVFDVIQRMEDTEPFSEELL+AMKRLW DSGVQECFGRSNEYQLNDSAKYFLDDLD
Sbjct: 102 SDGKMVFDVIQRMEDTEPFSEELLAAMKRLWADSGVQECFGRSNEYQLNDSAKYFLDDLD 161
Query: 69 RLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTA 128
RLGAK+YQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTA
Sbjct: 162 RLGAKDYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTA 221
Query: 129 IIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKK 188
IIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI++
Sbjct: 222 IIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIRR 281
Query: 189 SPLTICFPEYAGKR 202
SPLTICFPEY G +
Sbjct: 282 SPLTICFPEYTGAQ 295
|
Source: Bombyx mori Species: Bombyx mori Genus: Bombyx Family: Bombycidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 262 | ||||||
| FB|FBgn0001122 | 354 | Galphao "G protein alpha o sub | 0.732 | 0.542 | 0.947 | 1.2e-97 | |
| WB|WBGene00001648 | 354 | goa-1 [Caenorhabditis elegans | 0.763 | 0.564 | 0.88 | 2.3e-94 | |
| UNIPROTKB|P51875 | 354 | goa-1 "Guanine nucleotide-bind | 0.763 | 0.564 | 0.88 | 2.3e-94 | |
| UNIPROTKB|D4ABT0 | 302 | Gnao1 "Guanine nucleotide-bind | 0.729 | 0.632 | 0.874 | 1.9e-90 | |
| UNIPROTKB|E1C347 | 302 | GNAO1 "Uncharacterized protein | 0.729 | 0.632 | 0.863 | 2.5e-88 | |
| UNIPROTKB|G8JKZ5 | 267 | GNAO1 "Guanine nucleotide-bind | 0.748 | 0.734 | 0.846 | 5.3e-88 | |
| UNIPROTKB|P08239 | 354 | GNAO1 "Guanine nucleotide-bind | 0.748 | 0.553 | 0.846 | 5.3e-88 | |
| MGI|MGI:95775 | 354 | Gnao1 "guanine nucleotide bind | 0.751 | 0.556 | 0.842 | 5.3e-88 | |
| UNIPROTKB|E2RLG2 | 354 | GNAO1 "Uncharacterized protein | 0.729 | 0.539 | 0.863 | 6.7e-88 | |
| UNIPROTKB|P09471 | 354 | GNAO1 "Guanine nucleotide-bind | 0.729 | 0.539 | 0.863 | 6.7e-88 |
| FB|FBgn0001122 Galphao "G protein alpha o subunit" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 970 (346.5 bits), Expect = 1.2e-97, P = 1.2e-97
Identities = 182/192 (94%), Positives = 187/192 (97%)
Query: 9 TDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLD 68
+DAKMVFDV QRM DTEPFSEELL+AMKRLW D+GVQECF RSNEYQLNDSAKYFLDDLD
Sbjct: 102 SDAKMVFDVCQRMHDTEPFSEELLAAMKRLWQDAGVQECFSRSNEYQLNDSAKYFLDDLD 161
Query: 69 RLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTA 128
RLGAK+YQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTA
Sbjct: 162 RLGAKDYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTA 221
Query: 129 IIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKK 188
IIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI+K
Sbjct: 222 IIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIRK 281
Query: 189 SPLTICFPEYAG 200
SPLTICFPEY G
Sbjct: 282 SPLTICFPEYTG 293
|
|
| WB|WBGene00001648 goa-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 939 (335.6 bits), Expect = 2.3e-94, P = 2.3e-94
Identities = 176/200 (88%), Positives = 188/200 (94%)
Query: 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKY 62
G++ DAK+V DV+ RMEDTEPFSEELLS+MKRLW D+GVQ+CF RSNEYQLNDSAKY
Sbjct: 96 GSADREVDAKLVMDVVARMEDTEPFSEELLSSMKRLWGDAGVQDCFSRSNEYQLNDSAKY 155
Query: 63 FLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHC 122
FLDDL+RLG YQPTEQDILRTRVKTTGIVEVHF+FKNLNFKLFDVGGQRSERKKWIHC
Sbjct: 156 FLDDLERLGEAIYQPTEQDILRTRVKTTGIVEVHFTFKNLNFKLFDVGGQRSERKKWIHC 215
Query: 123 FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182
FEDVTAIIFCVAMSEYDQVLHEDETTNRM ESLKLFDSICNNKWFTDTSIILFLNKKDLF
Sbjct: 216 FEDVTAIIFCVAMSEYDQVLHEDETTNRMHESLKLFDSICNNKWFTDTSIILFLNKKDLF 275
Query: 183 EEKIKKSPLTICFPEYAGKR 202
EEKIKKSPLTICFPEY+G++
Sbjct: 276 EEKIKKSPLTICFPEYSGRQ 295
|
|
| UNIPROTKB|P51875 goa-1 "Guanine nucleotide-binding protein G(o) subunit alpha" [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 939 (335.6 bits), Expect = 2.3e-94, P = 2.3e-94
Identities = 176/200 (88%), Positives = 188/200 (94%)
Query: 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKY 62
G++ DAK+V DV+ RMEDTEPFSEELLS+MKRLW D+GVQ+CF RSNEYQLNDSAKY
Sbjct: 96 GSADREVDAKLVMDVVARMEDTEPFSEELLSSMKRLWGDAGVQDCFSRSNEYQLNDSAKY 155
Query: 63 FLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHC 122
FLDDL+RLG YQPTEQDILRTRVKTTGIVEVHF+FKNLNFKLFDVGGQRSERKKWIHC
Sbjct: 156 FLDDLERLGEAIYQPTEQDILRTRVKTTGIVEVHFTFKNLNFKLFDVGGQRSERKKWIHC 215
Query: 123 FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182
FEDVTAIIFCVAMSEYDQVLHEDETTNRM ESLKLFDSICNNKWFTDTSIILFLNKKDLF
Sbjct: 216 FEDVTAIIFCVAMSEYDQVLHEDETTNRMHESLKLFDSICNNKWFTDTSIILFLNKKDLF 275
Query: 183 EEKIKKSPLTICFPEYAGKR 202
EEKIKKSPLTICFPEY+G++
Sbjct: 276 EEKIKKSPLTICFPEYSGRQ 295
|
|
| UNIPROTKB|D4ABT0 Gnao1 "Guanine nucleotide-binding protein G(o) subunit alpha" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 902 (322.6 bits), Expect = 1.9e-90, P = 1.9e-90
Identities = 167/191 (87%), Positives = 178/191 (93%)
Query: 10 DAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDR 69
D+KMV DV+ RMEDTEPFS ELLSAM RLW DSG+QECF RS EYQLNDSAKY+LD LDR
Sbjct: 51 DSKMVCDVVSRMEDTEPFSAELLSAMMRLWGDSGIQECFNRSREYQLNDSAKYYLDSLDR 110
Query: 70 LGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAI 129
+GA +YQPTEQDILRTRVKTTGIVE HF+FKNL+F+LFDVGGQRSERKKWIHCFEDVTAI
Sbjct: 111 IGAADYQPTEQDILRTRVKTTGIVETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAI 170
Query: 130 IFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 189
IFCVA+S YDQVLHEDETTNRM ESLKLFDSICNNKWFTDTSIILFLNKKD+FEEKIKKS
Sbjct: 171 IFCVALSGYDQVLHEDETTNRMHESLKLFDSICNNKWFTDTSIILFLNKKDIFEEKIKKS 230
Query: 190 PLTICFPEYAG 200
PLTICFPEY G
Sbjct: 231 PLTICFPEYTG 241
|
|
| UNIPROTKB|E1C347 GNAO1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
Identities = 165/191 (86%), Positives = 176/191 (92%)
Query: 10 DAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDR 69
DAKMV DV+ RMEDTEPFS ELLSAM RLW DSG+QECF RS EYQLNDSA+Y+LD LDR
Sbjct: 51 DAKMVCDVVSRMEDTEPFSPELLSAMMRLWADSGIQECFNRSREYQLNDSAQYYLDSLDR 110
Query: 70 LGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAI 129
+GA +YQPTEQDILRTRVKTTGIVE HF+FKNL+F+LFDVGGQRSERKKWIHCFEDVTAI
Sbjct: 111 IGAADYQPTEQDILRTRVKTTGIVETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAI 170
Query: 130 IFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 189
IFCVA+S YDQVLHEDETTNRM ESL LFDSICNNK+F DTSIILFLNKKDLF EKIKKS
Sbjct: 171 IFCVALSGYDQVLHEDETTNRMHESLMLFDSICNNKFFIDTSIILFLNKKDLFAEKIKKS 230
Query: 190 PLTICFPEYAG 200
PLTICFPEYAG
Sbjct: 231 PLTICFPEYAG 241
|
|
| UNIPROTKB|G8JKZ5 GNAO1 "Guanine nucleotide-binding protein G(o) subunit alpha" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
Identities = 166/196 (84%), Positives = 176/196 (89%)
Query: 10 DAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDR 69
DAKMV DV+ RMEDTEPFS ELLSAM RLW DSG+QECF RS EYQLNDSAKY+LD LDR
Sbjct: 16 DAKMVCDVVSRMEDTEPFSPELLSAMMRLWGDSGIQECFNRSREYQLNDSAKYYLDSLDR 75
Query: 70 LGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAI 129
+GA +YQPTEQDILRTRVKTTGIVE HF+FKNL+F+LFDVGGQRSERKKWIHCFEDVTAI
Sbjct: 76 IGAADYQPTEQDILRTRVKTTGIVETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAI 135
Query: 130 IFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 189
IFCVA+S YDQVLHEDETTNRM ESL LFDSICNNK+F DTSIILFLNKKDLF EKIKKS
Sbjct: 136 IFCVALSGYDQVLHEDETTNRMHESLMLFDSICNNKFFIDTSIILFLNKKDLFGEKIKKS 195
Query: 190 PLTICFPEYAGKRPGE 205
PLTICFPEY G E
Sbjct: 196 PLTICFPEYTGSNTYE 211
|
|
| UNIPROTKB|P08239 GNAO1 "Guanine nucleotide-binding protein G(o) subunit alpha" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
Identities = 166/196 (84%), Positives = 176/196 (89%)
Query: 10 DAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDR 69
DAKMV DV+ RMEDTEPFS ELLSAM RLW DSG+QECF RS EYQLNDSAKY+LD LDR
Sbjct: 103 DAKMVCDVVSRMEDTEPFSPELLSAMMRLWGDSGIQECFNRSREYQLNDSAKYYLDSLDR 162
Query: 70 LGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAI 129
+GA +YQPTEQDILRTRVKTTGIVE HF+FKNL+F+LFDVGGQRSERKKWIHCFEDVTAI
Sbjct: 163 IGAADYQPTEQDILRTRVKTTGIVETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAI 222
Query: 130 IFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 189
IFCVA+S YDQVLHEDETTNRM ESL LFDSICNNK+F DTSIILFLNKKDLF EKIKKS
Sbjct: 223 IFCVALSGYDQVLHEDETTNRMHESLMLFDSICNNKFFIDTSIILFLNKKDLFGEKIKKS 282
Query: 190 PLTICFPEYAGKRPGE 205
PLTICFPEY G E
Sbjct: 283 PLTICFPEYTGSNTYE 298
|
|
| MGI|MGI:95775 Gnao1 "guanine nucleotide binding protein, alpha O" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
Identities = 166/197 (84%), Positives = 177/197 (89%)
Query: 9 TDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLD 68
TD+KMV DV+ RMEDTEPFS ELLSAM RLW DSG+QECF RS EYQLNDSAKY+LD LD
Sbjct: 102 TDSKMVCDVVSRMEDTEPFSAELLSAMMRLWGDSGIQECFNRSREYQLNDSAKYYLDSLD 161
Query: 69 RLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTA 128
R+GA +YQPTEQDILRTRVKTTGIVE HF+FKNL+F+LFDVGGQRSERKKWIHCFEDVTA
Sbjct: 162 RIGAGDYQPTEQDILRTRVKTTGIVETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTA 221
Query: 129 IIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKK 188
IIFCVA+S YDQVLHEDETTNRM ESL LFDSICNNK+F DTSIILFLNKKDLF EKIKK
Sbjct: 222 IIFCVALSGYDQVLHEDETTNRMHESLMLFDSICNNKFFIDTSIILFLNKKDLFGEKIKK 281
Query: 189 SPLTICFPEYAGKRPGE 205
SPLTICFPEY G E
Sbjct: 282 SPLTICFPEYPGSNTYE 298
|
|
| UNIPROTKB|E2RLG2 GNAO1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 878 (314.1 bits), Expect = 6.7e-88, P = 6.7e-88
Identities = 165/191 (86%), Positives = 175/191 (91%)
Query: 10 DAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDR 69
DAKMV DV+ RMEDTEPFS ELLSAM RLW DSG+QECF RS EYQLNDSAKY+LD LDR
Sbjct: 103 DAKMVCDVVSRMEDTEPFSAELLSAMMRLWGDSGIQECFNRSREYQLNDSAKYYLDSLDR 162
Query: 70 LGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAI 129
+GA +YQPTEQDILRTRVKTTGIVE HF+FKNL+F+LFDVGGQRSERKKWIHCFEDVTAI
Sbjct: 163 IGAADYQPTEQDILRTRVKTTGIVETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAI 222
Query: 130 IFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 189
IFCVA+S YDQVLHEDETTNRM ESL LFDSICNNK+F DTSIILFLNKKDLF EKIKKS
Sbjct: 223 IFCVALSGYDQVLHEDETTNRMHESLMLFDSICNNKFFIDTSIILFLNKKDLFGEKIKKS 282
Query: 190 PLTICFPEYAG 200
PLTICFPEY G
Sbjct: 283 PLTICFPEYTG 293
|
|
| UNIPROTKB|P09471 GNAO1 "Guanine nucleotide-binding protein G(o) subunit alpha" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 878 (314.1 bits), Expect = 6.7e-88, P = 6.7e-88
Identities = 165/191 (86%), Positives = 175/191 (91%)
Query: 10 DAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDR 69
DAKMV DV+ RMEDTEPFS ELLSAM RLW DSG+QECF RS EYQLNDSAKY+LD LDR
Sbjct: 103 DAKMVCDVVSRMEDTEPFSAELLSAMMRLWGDSGIQECFNRSREYQLNDSAKYYLDSLDR 162
Query: 70 LGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAI 129
+GA +YQPTEQDILRTRVKTTGIVE HF+FKNL+F+LFDVGGQRSERKKWIHCFEDVTAI
Sbjct: 163 IGAADYQPTEQDILRTRVKTTGIVETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAI 222
Query: 130 IFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 189
IFCVA+S YDQVLHEDETTNRM ESL LFDSICNNK+F DTSIILFLNKKDLF EKIKKS
Sbjct: 223 IFCVALSGYDQVLHEDETTNRMHESLMLFDSICNNKFFIDTSIILFLNKKDLFGEKIKKS 282
Query: 190 PLTICFPEYAG 200
PLTICFPEY G
Sbjct: 283 PLTICFPEYTG 293
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P53359 | GNAO_MANSE | No assigned EC number | 0.9476 | 0.7251 | 0.5352 | N/A | N/A |
| P16378 | GNAO_DROME | No assigned EC number | 0.9479 | 0.7328 | 0.5423 | yes | N/A |
| P30683 | GNAO_LYMST | No assigned EC number | 0.9381 | 0.7404 | 0.5480 | N/A | N/A |
| P38404 | GNAO_LOCMI | No assigned EC number | 0.9742 | 0.7404 | 0.5480 | N/A | N/A |
| P08239 | GNAO_BOVIN | No assigned EC number | 0.8593 | 0.7328 | 0.5423 | yes | N/A |
| O15976 | GNAO_MIZYE | No assigned EC number | 0.9086 | 0.7519 | 0.5518 | N/A | N/A |
| P51875 | GNAO_CAEEL | No assigned EC number | 0.88 | 0.7633 | 0.5649 | yes | N/A |
| P51877 | GNAO_HELTI | No assigned EC number | 0.9381 | 0.7404 | 0.5480 | N/A | N/A |
| P59215 | GNAO_RAT | No assigned EC number | 0.8541 | 0.7328 | 0.5423 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 262 | |||
| cd00066 | 315 | cd00066, G-alpha, Alpha subunit of G proteins (gua | 1e-133 | |
| smart00275 | 342 | smart00275, G_alpha, G protein alpha subunit | 1e-114 | |
| pfam00503 | 329 | pfam00503, G-alpha, G-protein alpha subunit | 1e-106 | |
| cd00878 | 158 | cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf | 1e-11 | |
| pfam00025 | 174 | pfam00025, Arf, ADP-ribosylation factor family | 2e-11 | |
| cd04149 | 168 | cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | 3e-08 | |
| PLN00223 | 181 | PLN00223, PLN00223, ADP-ribosylation factor; Provi | 1e-07 | |
| cd04150 | 159 | cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A | 1e-07 | |
| cd04156 | 160 | cd04156, ARLTS1, Arf-like tumor suppressor gene 1 | 5e-07 | |
| smart00177 | 175 | smart00177, ARF, ARF-like small GTPases; ARF, ADP- | 6e-07 | |
| cd04158 | 169 | cd04158, ARD1, (ADP-ribosylation factor domain pro | 1e-06 | |
| cd00879 | 191 | cd00879, Sar1, Sar1 is an essential component of C | 3e-06 | |
| PTZ00133 | 182 | PTZ00133, PTZ00133, ADP-ribosylation factor; Provi | 3e-06 | |
| cd04151 | 158 | cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | 7e-06 | |
| cd04157 | 162 | cd04157, Arl6, Arf-like 6 (Arl6) GTPase | 1e-05 | |
| cd04161 | 167 | cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A | 2e-04 | |
| cd04154 | 173 | cd04154, Arl2, Arf-like 2 (Arl2) GTPase | 2e-04 | |
| cd04160 | 168 | cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | 3e-04 | |
| cd04155 | 174 | cd04155, Arl3, Arf-like 3 (Arl3) GTPase | 4e-04 | |
| cd04153 | 174 | cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) | 0.001 | |
| cd04159 | 159 | cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl | 0.004 | |
| smart00178 | 184 | smart00178, SAR, Sar1p-like members of the Ras-fam | 0.004 |
| >gnl|CDD|206639 cd00066, G-alpha, Alpha subunit of G proteins (guanine nucleotide binding) | Back alignment and domain information |
|---|
Score = 378 bits (973), Expect = e-133
Identities = 140/202 (69%), Positives = 160/202 (79%), Gaps = 1/202 (0%)
Query: 2 NGTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAK 61
G + DAK + + R E+ P EL A+KRLW D G+Q C+ R NEYQLNDSAK
Sbjct: 62 YGDPENEKDAKKILSLAPRAEE-GPLPPELAEAIKRLWKDPGIQACYDRRNEYQLNDSAK 120
Query: 62 YFLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIH 121
YFLD+LDR+ +Y PTEQDILR+RVKTTGI+E FS KNL F++FDVGGQRSERKKWIH
Sbjct: 121 YFLDNLDRISDPDYIPTEQDILRSRVKTTGIIETDFSIKNLKFRMFDVGGQRSERKKWIH 180
Query: 122 CFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181
CFEDVTAIIF VA+SEYDQVL EDE+ NRMQESLKLFDSICN++WF +TSIILFLNKKDL
Sbjct: 181 CFEDVTAIIFVVALSEYDQVLVEDESVNRMQESLKLFDSICNSRWFANTSIILFLNKKDL 240
Query: 182 FEEKIKKSPLTICFPEYAGKRP 203
FEEKIKKSPLT FP+Y G
Sbjct: 241 FEEKIKKSPLTDYFPDYTGPPN 262
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. Length = 315 |
| >gnl|CDD|214595 smart00275, G_alpha, G protein alpha subunit | Back alignment and domain information |
|---|
Score = 330 bits (848), Expect = e-114
Identities = 125/192 (65%), Positives = 154/192 (80%), Gaps = 1/192 (0%)
Query: 10 DAKMVFDVIQRMEDTE-PFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLD 68
D +++ + + ++TE +E+ A+K LW D G+QEC+ R NE+QLNDSA YFLD++D
Sbjct: 91 DIRIITEQFNKTDETENVLPKEIAKAIKALWKDEGIQECYRRRNEFQLNDSASYFLDNID 150
Query: 69 RLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTA 128
R+G +Y PTEQDILR+RV TTGI E F K L F++FDVGGQRSERKKWIHCF++VTA
Sbjct: 151 RIGDPDYVPTEQDILRSRVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTA 210
Query: 129 IIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKK 188
IIFCVA+SEYDQVL EDE+TNRMQESL LF+SICN++WF +TSIILFLNK DLFEEKIKK
Sbjct: 211 IIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLFEEKIKK 270
Query: 189 SPLTICFPEYAG 200
PL FP+Y G
Sbjct: 271 VPLVDYFPDYKG 282
|
Subunit of G proteins that contains the guanine nucleotide binding site. Length = 342 |
| >gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit | Back alignment and domain information |
|---|
Score = 310 bits (797), Expect = e-106
Identities = 127/204 (62%), Positives = 154/204 (75%), Gaps = 2/204 (0%)
Query: 1 MNGTSLDTTDAKMVFDV--IQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLND 58
N + AK + + D FSEEL +K LW D G+QE + RSNE+QL+D
Sbjct: 65 SNSKPENEEIAKKLKSILDSLLDVDETRFSEELAEDIKELWNDPGIQEVYNRSNEFQLSD 124
Query: 59 SAKYFLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKK 118
SAKYFLD+LDR+ + +Y PT+QDILR RVKTTGI+E F FK L F+LFDVGGQRSERKK
Sbjct: 125 SAKYFLDNLDRIASPDYVPTDQDILRARVKTTGIIETKFDFKGLKFRLFDVGGQRSERKK 184
Query: 119 WIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNK 178
WIHCFEDVTAIIF V++SEYDQVL+ED++TNR++ESL LF+ ICN+ WF +T IILFLNK
Sbjct: 185 WIHCFEDVTAIIFVVSLSEYDQVLYEDDSTNRLEESLNLFEEICNSPWFKNTPIILFLNK 244
Query: 179 KDLFEEKIKKSPLTICFPEYAGKR 202
KDLFEEK+KK PL+ FPEY G
Sbjct: 245 KDLFEEKLKKGPLSDYFPEYEGDP 268
|
G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA. Length = 329 |
| >gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 1e-11
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 12/84 (14%)
Query: 99 FKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDET-TNRMQESLKL 157
+KN+ F ++DVGGQ R W H +E+ +IF V D + R++E+
Sbjct: 40 YKNVKFTVWDVGGQDKIRPLWKHYYENTDGLIFVV-----------DSSDRERIEEAKNE 88
Query: 158 FDSICNNKWFTDTSIILFLNKKDL 181
+ N + +++ NK+DL
Sbjct: 89 LHKLLNEEELKGAPLLILANKQDL 112
|
Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158 |
| >gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 2e-11
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 16/101 (15%)
Query: 86 RVKTTGIVEVHF-----SFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQ 140
+ TT I + F ++KN+ F ++DVGGQ S R W + F + A+IF V D
Sbjct: 38 EIVTT-IPTIGFNVETVTYKNVKFTVWDVGGQESLRPLWRNYFPNTDAVIFVV-----DS 91
Query: 141 VLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181
+ R++E+ + ++ N + D +++ NK+DL
Sbjct: 92 ADRD-----RIEEAKEELHALLNEEELADAPLLILANKQDL 127
|
Pfam combines a number of different Prosite families together. Length = 174 |
| >gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 3e-08
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHE 144
T + T G ++KN+ F ++DVGGQ R W H + +IF V ++
Sbjct: 36 TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADR------ 89
Query: 145 DETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181
+R+ E+ + I N++ D +++F NK+DL
Sbjct: 90 ----DRIDEARQELHRIINDREMRDALLLVFANKQDL 122
|
Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168 |
| >gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 1e-07
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 10/97 (10%)
Query: 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHE 144
T + T G +KN++F ++DVGGQ R W H F++ +IF V ++ D+V+
Sbjct: 44 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 103
Query: 145 DETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181
+ +RM +L D++ +++F NK+DL
Sbjct: 104 RDELHRMLNEDELRDAV----------LLVFANKQDL 130
|
Length = 181 |
| >gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5) | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-07
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHE 144
T + T G +KN++F ++DVGGQ R W H F++ +IF V ++ +++
Sbjct: 27 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEA 86
Query: 145 DETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181
E RM +L D++ +++F NK+DL
Sbjct: 87 REELQRMLNEDELRDAV----------LLVFANKQDL 113
|
The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159 |
| >gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11) | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 5e-07
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFD 159
K+L+ ++DVGGQ R W E+ +++ V S+ R+ ES K
Sbjct: 42 KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEA----------RLDESQKELK 91
Query: 160 SICNNKWFTDTSIILFLNKKDL 181
I N+ ++L NK+DL
Sbjct: 92 HILKNEHIKGVPVVLLANKQDL 113
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160 |
| >gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 6e-07
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHE 144
T + T G ++KN++F ++DVGGQ R W H + + +IF V ++ D++
Sbjct: 40 TTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEA 99
Query: 145 DETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181
E +RM +L D++ I++F NK+DL
Sbjct: 100 REELHRMLNEDELRDAV----------ILVFANKQDL 126
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175 |
| >gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1) | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 1e-06
Identities = 36/147 (24%), Positives = 56/147 (38%), Gaps = 29/147 (19%)
Query: 79 EQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEY 138
+QD + T G +KNL F ++DVGG+ R W H + + A++F + S
Sbjct: 20 KQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVIDSSHR 79
Query: 139 DQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEY 198
D R+ E+ + K D +++F NK+D+
Sbjct: 80 D----------RVSEAHSELAKLLTEKELRDALLLIFANKQDV----------------- 112
Query: 199 AGKRPGERNRMQESLKLFDSICNNKWF 225
AG E M E L L C W+
Sbjct: 113 AGALSVE--EMTELLSLHKLCCGRSWY 137
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169 |
| >gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 3e-06
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDS 160
N+ F FD+GG R+ W F +V I+F V ++ R QES + DS
Sbjct: 62 NVKFTTFDLGGHEQARRVWKDYFPEVDGIVFLVDAADP----------ERFQESKEELDS 111
Query: 161 ICNNKWFTDTSIILFLNKKDL 181
+ N++ + I++ NK D
Sbjct: 112 LLNDEELANVPILILGNKIDK 132
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191 |
| >gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 3e-06
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHE 144
T + T G +KNL F ++DVGGQ R W H +++ +IF V ++ +++
Sbjct: 44 TTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDA 103
Query: 145 DETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181
E RM +L D++ +++F NK+DL
Sbjct: 104 REELERMLSEDELRDAV----------LLVFANKQDL 130
|
Length = 182 |
| >gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 7e-06
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 98 SFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKL 157
++KNL F+++D+GGQ S R W + + AII+ V ++ D R+ S
Sbjct: 39 TYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD----------RLGISKSE 88
Query: 158 FDSICNNKWFTDTSIILFLNKKDL 181
++ + D +++F NK+D+
Sbjct: 89 LHAMLEEEELKDAVLLVFANKQDM 112
|
Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158 |
| >gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 1e-05
Identities = 32/131 (24%), Positives = 46/131 (35%), Gaps = 41/131 (31%)
Query: 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIF----------CVAMS 136
V T G F NL+F FD+ GQ R W H ++++ IIF VA
Sbjct: 30 VPTVGFNVESFKKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKD 89
Query: 137 EYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFE------------- 183
E + +L+ + +R I+ + NK DL +
Sbjct: 90 ELELLLNHPDIKHR------------------RIPILFYANKMDLPDALTAVKITQLLCL 131
Query: 184 EKIKKSPLTIC 194
E IK P I
Sbjct: 132 ENIKDKPWHIF 142
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162 |
| >gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13 | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 2e-04
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
Query: 89 TTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETT 148
T G +FD+GG + R W++ + + ++F V S+ D
Sbjct: 30 TVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD--------- 80
Query: 149 NRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181
R+QE ++ + + + I++ NK+D
Sbjct: 81 -RVQEVKEILRELLQHPRVSGKPILVLANKQDK 112
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167 |
| >gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 2e-04
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Query: 97 FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLK 156
+ ++DVGGQ+S R W + FE A+I+ V S+ R+++ +
Sbjct: 53 LEYNGYKLNIWDVGGQKSLRSYWRNYFESTDALIWVVDSSD----------RARLEDCKR 102
Query: 157 LFDSICNNKWFTDTSIILFLNKKDL 181
+ + ++++F NK+DL
Sbjct: 103 ELQKLLVEERLAGATLLIFANKQDL 127
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173 |
| >gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 3e-04
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 10/84 (11%)
Query: 98 SFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKL 157
+D+GGQ R W + + +I+ + + D R ES
Sbjct: 47 EVGKARLMFWDLGGQEELRSLWDKYYAESHGVIYVIDST--------DRE--RFNESKSA 96
Query: 158 FDSICNNKWFTDTSIILFLNKKDL 181
F+ + NN+ +++ NK+DL
Sbjct: 97 FEKVINNEALEGVPLLVLANKQDL 120
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168 |
| >gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 4e-04
Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 15/90 (16%)
Query: 97 FSFKNLN-----FKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRM 151
F+ KN+ ++D+GGQR R W + FE+ +I+ + ++ R
Sbjct: 49 FNIKNVQADGFKLNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSAD----------RKRF 98
Query: 152 QESLKLFDSICNNKWFTDTSIILFLNKKDL 181
+E+ + + + +++F NK+DL
Sbjct: 99 EEAGQELVELLEEEKLAGVPVLVFANKQDL 128
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174 |
| >gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.001
Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 14/87 (16%)
Query: 97 FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRM--QES 154
+KN+ F ++D+GGQ S R W + + A+I + ++ +++ E +M E
Sbjct: 54 IVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHED 113
Query: 155 LKLFDSICNNKWFTDTSIILFLNKKDL 181
L+ +++ NK+DL
Sbjct: 114 LR------------KAVLLVLANKQDL 128
|
Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174 |
| >gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 0.004
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCV 133
N+ K++D+GGQ R W V AI++ V
Sbjct: 43 NVTIKVWDLGGQPRFRSMWERYCRGVNAIVYVV 75
|
Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159 |
| >gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Score = 36.8 bits (85), Expect = 0.004
Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 97 FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLK 156
+ N+ F FD+GG + R+ W F +V I++ V + + R ES +
Sbjct: 56 LAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKE----------RFAESKR 105
Query: 157 LFDSICNNKWFTDTSIILFLNKKD 180
D++ +++ ++ NK D
Sbjct: 106 ELDALLSDEELATVPFLILGNKID 129
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 262 | |||
| KOG0082|consensus | 354 | 100.0 | ||
| KOG0085|consensus | 359 | 100.0 | ||
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 100.0 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 100.0 | |
| KOG0099|consensus | 379 | 100.0 | ||
| PF00503 | 389 | G-alpha: G-protein alpha subunit; InterPro: IPR001 | 100.0 | |
| KOG0070|consensus | 181 | 99.94 | ||
| KOG0071|consensus | 180 | 99.94 | ||
| KOG0084|consensus | 205 | 99.9 | ||
| KOG0092|consensus | 200 | 99.89 | ||
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 99.87 | |
| KOG0073|consensus | 185 | 99.87 | ||
| KOG0094|consensus | 221 | 99.87 | ||
| KOG0078|consensus | 207 | 99.86 | ||
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 99.86 | |
| KOG0087|consensus | 222 | 99.85 | ||
| KOG0072|consensus | 182 | 99.84 | ||
| KOG0075|consensus | 186 | 99.84 | ||
| KOG0098|consensus | 216 | 99.83 | ||
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 99.83 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.83 | |
| KOG0076|consensus | 197 | 99.83 | ||
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 99.82 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 99.82 | |
| KOG0080|consensus | 209 | 99.82 | ||
| KOG0095|consensus | 213 | 99.82 | ||
| KOG0093|consensus | 193 | 99.81 | ||
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.81 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.8 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 99.8 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.8 | |
| PTZ00099 | 176 | rab6; Provisional | 99.8 | |
| KOG0091|consensus | 213 | 99.8 | ||
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.79 | |
| KOG0086|consensus | 214 | 99.79 | ||
| KOG0079|consensus | 198 | 99.79 | ||
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 99.78 | |
| KOG0074|consensus | 185 | 99.77 | ||
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.77 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 99.77 | |
| KOG0081|consensus | 219 | 99.76 | ||
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 99.76 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 99.75 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.75 | |
| KOG0083|consensus | 192 | 99.75 | ||
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.75 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.75 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 99.74 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.74 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.74 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.74 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.74 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.73 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.73 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.73 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.72 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.72 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.72 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.72 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.72 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.72 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.72 | |
| KOG0394|consensus | 210 | 99.71 | ||
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.71 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 99.71 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 99.7 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.7 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.7 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.7 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.69 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.69 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.69 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.69 | |
| KOG0088|consensus | 218 | 99.69 | ||
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.68 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.68 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 99.68 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.68 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.68 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.67 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.67 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.67 | |
| KOG0097|consensus | 215 | 99.67 | ||
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.67 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.67 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.66 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.66 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.66 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.65 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.64 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.64 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.64 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.64 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.64 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.63 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.63 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.63 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.63 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.63 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.63 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.63 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.63 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.63 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.63 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.62 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.62 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.61 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.6 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.6 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.6 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.59 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.59 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.59 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.59 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.59 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.58 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.58 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.58 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.57 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.57 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.57 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.56 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.56 | |
| KOG0395|consensus | 196 | 99.56 | ||
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.54 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.53 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.52 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.5 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.5 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.49 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.49 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.48 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.48 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.47 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.46 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.43 | |
| KOG0393|consensus | 198 | 99.43 | ||
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.41 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.39 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.39 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.37 | |
| KOG0077|consensus | 193 | 99.36 | ||
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.36 | |
| KOG4252|consensus | 246 | 99.34 | ||
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.33 | |
| KOG0096|consensus | 216 | 99.31 | ||
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.27 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.26 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.23 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.22 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.21 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.19 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.17 | |
| KOG3883|consensus | 198 | 99.15 | ||
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.14 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.14 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.13 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.13 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.12 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.11 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.09 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.09 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.08 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.06 | |
| KOG1673|consensus | 205 | 99.05 | ||
| PRK15494 | 339 | era GTPase Era; Provisional | 99.04 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.03 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.02 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.01 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.0 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 98.99 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 98.99 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 98.97 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 98.97 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 98.97 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 98.96 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 98.92 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 98.9 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 98.9 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 98.9 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 98.9 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 98.88 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 98.87 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 98.86 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 98.85 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 98.81 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 98.8 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 98.8 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 98.8 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 98.79 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 98.78 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 98.78 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 98.78 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 98.77 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 98.75 | |
| KOG4423|consensus | 229 | 98.74 | ||
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 98.71 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 98.7 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 98.7 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 98.69 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 98.68 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 98.66 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 98.65 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 98.64 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 98.63 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 98.63 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 98.61 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 98.61 | |
| KOG0090|consensus | 238 | 98.59 | ||
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 98.58 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 98.57 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.56 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 98.54 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 98.49 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 98.49 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 98.46 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 98.45 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 98.45 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 98.44 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 98.44 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 98.44 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 98.43 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 98.42 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 98.42 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 98.4 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 98.39 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 98.35 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 98.3 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 98.3 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 98.28 | |
| KOG0462|consensus | 650 | 98.24 | ||
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 98.2 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 98.19 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 98.16 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 98.15 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 98.13 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 98.13 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 98.12 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 98.09 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 98.06 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 98.05 | |
| PRK13768 | 253 | GTPase; Provisional | 97.98 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 97.98 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 97.98 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 97.97 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 97.95 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 97.95 | |
| KOG1144|consensus | 1064 | 97.9 | ||
| KOG1145|consensus | 683 | 97.89 | ||
| CHL00071 | 409 | tufA elongation factor Tu | 97.89 | |
| KOG1489|consensus | 366 | 97.89 | ||
| PLN03126 | 478 | Elongation factor Tu; Provisional | 97.88 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 97.87 | |
| PF06858 | 58 | NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte | 97.86 | |
| KOG3886|consensus | 295 | 97.83 | ||
| PRK12739 | 691 | elongation factor G; Reviewed | 97.83 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 97.82 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 97.75 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 97.73 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 97.73 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 97.7 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 97.68 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 97.65 | |
| KOG1490|consensus | 620 | 97.63 | ||
| PRK12289 | 352 | GTPase RsgA; Reviewed | 97.62 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 97.6 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 97.57 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 97.51 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 97.5 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 97.48 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 97.43 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 97.28 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 97.25 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 97.18 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 97.14 | |
| KOG1707|consensus | 625 | 97.11 | ||
| PTZ00416 | 836 | elongation factor 2; Provisional | 97.1 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 97.09 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 97.07 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 97.05 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 97.05 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 96.96 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 96.95 | |
| KOG0458|consensus | 603 | 96.94 | ||
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 96.92 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 96.9 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 96.85 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 96.84 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 96.79 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 96.79 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 96.78 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 96.67 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 96.55 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 96.35 | |
| KOG1532|consensus | 366 | 96.29 | ||
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 96.28 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 96.19 | |
| KOG1191|consensus | 531 | 96.14 | ||
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 96.13 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 96.13 | |
| KOG1423|consensus | 379 | 96.09 | ||
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 96.08 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 95.95 | |
| KOG0468|consensus | 971 | 95.76 | ||
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 95.43 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 95.39 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 94.96 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 94.88 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 94.87 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 94.84 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 94.73 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 94.36 | |
| KOG0705|consensus | 749 | 94.07 | ||
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 94.05 | |
| KOG0464|consensus | 753 | 93.84 | ||
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 93.61 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 93.15 | |
| KOG0461|consensus | 522 | 92.85 | ||
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 92.83 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 92.6 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 92.44 | |
| KOG3905|consensus | 473 | 92.29 | ||
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 91.73 | |
| KOG3887|consensus | 347 | 91.67 | ||
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 91.0 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 90.2 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 90.13 | |
| KOG0465|consensus | 721 | 89.88 | ||
| KOG0467|consensus | 887 | 89.31 | ||
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 88.84 | |
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 88.6 | |
| KOG0085|consensus | 359 | 87.85 | ||
| KOG0459|consensus | 501 | 87.72 | ||
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 87.5 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 85.82 | |
| KOG0460|consensus | 449 | 84.84 | ||
| cd03110 | 179 | Fer4_NifH_child This protein family's function is | 84.58 | |
| KOG1143|consensus | 591 | 83.39 | ||
| KOG1424|consensus | 562 | 83.27 | ||
| PF14331 | 266 | ImcF-related_N: ImcF-related N-terminal domain | 82.71 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 81.26 |
| >KOG0082|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-63 Score=438.04 Aligned_cols=234 Identities=59% Similarity=0.967 Sum_probs=225.8
Q ss_pred CCCCHHHHHHHHhhhhccCCCCCCcHHHHHHHHHhcCChHHHHHHhcccccccccchhHHHhhccccCCCCCCcCccccc
Q psy6623 4 TSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQDIL 83 (262)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d~~v~~~~~~~~~~~l~d~~~yfl~~l~ri~~~~y~pt~~Dil 83 (262)
+|.++.++..++.+...+.+.+.+++|++++|..||+||+||+||.|+++|+|+|++.|||++++||++|+|.||.+|||
T Consensus 97 ~~~~~~d~~~~~~~~~~~~~~~~~~~e~~~~i~~lW~d~~Iq~~~~r~~e~~l~Dsa~Yfl~~l~rI~~~~Y~PT~~DIL 176 (354)
T KOG0082|consen 97 DPERENDAQKLTLLADAAEELGVFSPELAEAIKELWKDPGIQACYERRREFQLNDSAKYFLENLDRISSPDYVPTEQDIL 176 (354)
T ss_pred ChhhhhHHHHHHHhhhcccccccCCHHHHHHHHHHHcCHHHHHHHHcCCcCCCCccHHHHHHhHHHhcCCCCCCCHHHHH
Confidence 57788899999888777777679999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh
Q psy6623 84 RTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN 163 (262)
Q Consensus 84 ~~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~ 163 (262)
++|+||+|+.+..|.+++.++.++|+|||+++|++|.|||+++++||||+++|+|||++.||...||+.+|+.+|+++++
T Consensus 177 ~~R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n 256 (354)
T KOG0082|consen 177 RSRVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICN 256 (354)
T ss_pred hhccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcch--hHHHHHHhhh------ccceeecccccccceeeeee
Q psy6623 164 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGE--RNRMQESLKL------FDSICNNKWFTDTSIILFLN 235 (262)
Q Consensus 164 ~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~--~~~i~~~f~~------~~~~~~~tsA~d~~~I~~~f 235 (262)
++||.+++|+||+||.|||.||+...+++.|||||.|.++.+ ..||+.+|.+ +++|+|.|||+|++||+.+|
T Consensus 257 ~~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf 336 (354)
T KOG0082|consen 257 NKWFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVF 336 (354)
T ss_pred CcccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHH
Confidence 999999999999999999999999999999999999997766 9999999987 69999999999999999999
Q ss_pred hh
Q psy6623 236 KK 237 (262)
Q Consensus 236 ~~ 237 (262)
++
T Consensus 337 ~a 338 (354)
T KOG0082|consen 337 DA 338 (354)
T ss_pred HH
Confidence 86
|
|
| >KOG0085|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-59 Score=384.68 Aligned_cols=232 Identities=49% Similarity=0.783 Sum_probs=221.8
Q ss_pred CCCCHHHHHHHHhhhhccCCCCCCcHHHHHHHHHhcCChHHHHHHhcccccccccchhHHHhhccccCCCCCCcCccccc
Q psy6623 4 TSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQDIL 83 (262)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d~~v~~~~~~~~~~~l~d~~~yfl~~l~ri~~~~y~pt~~Dil 83 (262)
.++|+.+|..++.+.. .....|+.+++++|++||.|||||+||.||+||+|.||++|+|.+++||+.+.|.||.+|++
T Consensus 103 ~e~nk~~A~~vrevd~--ekVttfe~~yv~aik~LW~D~GIqeCYdRRREyqLsDSakYylsdldria~~~ylPTqQDvL 180 (359)
T KOG0085|consen 103 REENKAHASLVREVDV--EKVTTFEKRYVSAIKWLWRDPGIQECYDRRREYQLSDSAKYYLSDLDRIATPGYLPTQQDVL 180 (359)
T ss_pred cccchhhhhHhhhcch--HHhhhhhHHHHHHHHHHHhCcchHHHHHHHHHhhcchhhhHHhhhhhhhcCcccCcchhhhh
Confidence 4678888888887755 45678999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh
Q psy6623 84 RTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN 163 (262)
Q Consensus 84 ~~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~ 163 (262)
+.|+||+|+.+..|.+.++.|++.|+|||+++|++|.|||+++.+++|.+++|.|||++.|.++.||+++++.+|..++.
T Consensus 181 RvRvPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~ 260 (359)
T KOG0085|consen 181 RVRVPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIIT 260 (359)
T ss_pred eeecCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcch---hHHHHHHhhh------ccceeecccccccceeeee
Q psy6623 164 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGE---RNRMQESLKL------FDSICNNKWFTDTSIILFL 234 (262)
Q Consensus 164 ~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~---~~~i~~~f~~------~~~~~~~tsA~d~~~I~~~ 234 (262)
.||+.+.++|+|+||.|++++|+..+.+.+|||+|.|+..+. .+||++.|.+ +.+|.|+|||+|++||+.|
T Consensus 261 yPWF~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfV 340 (359)
T KOG0085|consen 261 YPWFQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFV 340 (359)
T ss_pred cccccCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHH
Confidence 999999999999999999999999999999999999998765 8999999987 7899999999999999999
Q ss_pred ehh
Q psy6623 235 NKK 237 (262)
Q Consensus 235 f~~ 237 (262)
|.+
T Consensus 341 Faa 343 (359)
T KOG0085|consen 341 FAA 343 (359)
T ss_pred HHH
Confidence 986
|
|
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-54 Score=384.94 Aligned_cols=233 Identities=60% Similarity=0.954 Sum_probs=218.3
Q ss_pred CCCCHHHHHHHHhhhhccCCCCCCcHHHHHHHHHhcCChHHHHHHhcccccccccchhHHHhhccccCCCCCCcCccccc
Q psy6623 4 TSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQDIL 83 (262)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d~~v~~~~~~~~~~~l~d~~~yfl~~l~ri~~~~y~pt~~Dil 83 (262)
+|+++..+..+....... ....+++++++.|..||+||+||+||.++++++|+|+++|||++++||+.++|.||.+|++
T Consensus 64 ~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~i~~lW~d~~iq~~~~~r~e~~l~d~~~yf~~~~~ri~~~~y~Pt~~Dil 142 (317)
T cd00066 64 DPENEKDAKKILSFAPEL-EEGELPPELAEAIKELWKDPGIQACYDRRNEFQLNDSAKYFLDNLDRISDPDYIPTEQDIL 142 (317)
T ss_pred ChhhHHHHHHHHhccccc-cccCCCHHHHHHHHHHhCCHHHHHHHHhccccccccchHHHHHhHHHHhCCCCCCChhHhe
Confidence 566777777777665432 3357999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh
Q psy6623 84 RTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN 163 (262)
Q Consensus 84 ~~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~ 163 (262)
+++.||+|+.+..|.++++++.+||+|||+++|++|.+||+++++||||+|+|+||+.+.|++..+++.+++..|+++++
T Consensus 143 ~~r~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~ 222 (317)
T cd00066 143 RARVKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICN 222 (317)
T ss_pred eeecccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCC-CCcch--hHHHHHHhhh------ccceeecccccccceeeee
Q psy6623 164 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAG-KRPGE--RNRMQESLKL------FDSICNNKWFTDTSIILFL 234 (262)
Q Consensus 164 ~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g-~~~~~--~~~i~~~f~~------~~~~~~~tsA~d~~~I~~~ 234 (262)
++++.++|++|++||+|++.+|++..++..|||+|.| +++.+ .+||.++|.+ |.+|+|+|||+|+++|+.+
T Consensus 223 ~~~~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~v 302 (317)
T cd00066 223 SRWFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFV 302 (317)
T ss_pred CccccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHH
Confidence 9999999999999999999999999999999999999 66555 9999999986 6899999999999999999
Q ss_pred ehh
Q psy6623 235 NKK 237 (262)
Q Consensus 235 f~~ 237 (262)
|++
T Consensus 303 f~~ 305 (317)
T cd00066 303 FDA 305 (317)
T ss_pred HHH
Confidence 976
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-54 Score=385.86 Aligned_cols=234 Identities=55% Similarity=0.906 Sum_probs=214.9
Q ss_pred CCCCHHHHHHHHhhhhcc-CCCCCCcHHHHHHHHHhcCChHHHHHHhcccccccccchhHHHhhccccCCCCCCcCcccc
Q psy6623 4 TSLDTTDAKMVFDVIQRM-EDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQDI 82 (262)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~lw~d~~v~~~~~~~~~~~l~d~~~yfl~~l~ri~~~~y~pt~~Di 82 (262)
++.++..+..+++..... .....+++++++.|..||+||+||+||.++++|+|+|++.||+++++||++++|.||.+|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~LW~D~~iq~~~~~~~~~~l~ds~~yf~~~~~ri~~~~y~Pt~~Di 164 (342)
T smart00275 85 DPESILDIRIITEQFNKTDETENVLPKEIAKAIKALWKDEGIQECYRRRNEFQLNDSASYFLDNIDRIGDPDYVPTEQDI 164 (342)
T ss_pred ChhhHHHHHHHhccccccccccccCCHHHHHHHHHHHCCHHHHHHHHhccccccccchhHHHHHHHHHhCCCCCCCHHHh
Confidence 344445566666553111 1224689999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 83 LRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 83 l~~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
++++.||+|+.+..+.++++++.+||+|||+++|++|.+||+++++||||+|+|+||+++.|++..+++.+++.+|++++
T Consensus 165 l~~r~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~ 244 (342)
T smart00275 165 LRSRVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESIC 244 (342)
T ss_pred hheeCCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcch--hHHHHHHhhh-------ccceeecccccccceeee
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGE--RNRMQESLKL-------FDSICNNKWFTDTSIILF 233 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~--~~~i~~~f~~-------~~~~~~~tsA~d~~~I~~ 233 (262)
+++++.++|++|++||+|++.+|+...++..|||+|.|+++.+ .+||.++|.+ |.+|+|+|||+|+++|+.
T Consensus 245 ~~~~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~ 324 (342)
T smart00275 245 NSRWFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRV 324 (342)
T ss_pred cCccccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHH
Confidence 9999999999999999999999999999999999999987655 9999999975 569999999999999999
Q ss_pred eehh
Q psy6623 234 LNKK 237 (262)
Q Consensus 234 ~f~~ 237 (262)
+|++
T Consensus 325 v~~~ 328 (342)
T smart00275 325 VFDA 328 (342)
T ss_pred HHHH
Confidence 9975
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >KOG0099|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-55 Score=364.40 Aligned_cols=233 Identities=43% Similarity=0.727 Sum_probs=216.0
Q ss_pred CCCCCHHHHHHHHhhhhccCCCCCCcHHHHHHHHHhcCChHHHHHHhcccccccccchhHHHhhccccCCCCCCcCcccc
Q psy6623 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQDI 82 (262)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d~~v~~~~~~~~~~~l~d~~~yfl~~l~ri~~~~y~pt~~Di 82 (262)
++|+|+..+++|++++...+ ..+++|+.+.+..||+|.||+.||+|++||+|.|+|+|||+++++|..++|.|+.+||
T Consensus 105 ~~~~~~~~~dYIls~~~~~~--~~~~~Ef~dHv~~lW~D~Gv~acyeRSnEyqLiDcAqYFLd~~~~i~~~~Y~Ps~qDi 182 (379)
T KOG0099|consen 105 ANPENQFRVDYILSVMNSPD--FDYPPEFYDHVKTLWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQADYVPSDQDI 182 (379)
T ss_pred CCcccchhHHHHHhcCCCCc--ccCCHHHHHHHHHHhhhhhHHHHHhccCccchhhHHHHHHHhhheecccCCCCcHHHH
Confidence 58999999999999987544 4899999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 83 LRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 83 l~~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
|+||+-|.||.+.+|.++.++|+++|+|||+.+|++|..||.++++||||+++|+|++++.||++.||+.|++.+|+++.
T Consensus 183 LrcRvlTsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiW 262 (379)
T KOG0099|consen 183 LRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIW 262 (379)
T ss_pred HHhhhhccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccC--CCcccCCCCCCCCcc--------h------hH-HHHHHhhh---------c
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKS--PLTICFPEYAGKRPG--------E------RN-RMQESLKL---------F 216 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~--~l~~~fp~~~g~~~~--------~------~~-~i~~~f~~---------~ 216 (262)
++.|+..+.+|||+||+|+..+|+... .+.+|||+|.+.... + .+ ||++.|.. +
T Consensus 263 nNRwL~tisvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h 342 (379)
T KOG0099|consen 263 NNRWLRTISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRH 342 (379)
T ss_pred hhhHHhhhheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCce
Confidence 999999999999999999999998754 689999999763221 1 22 45566665 6
Q ss_pred cceeecccccccceeeeeehh
Q psy6623 217 DSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 217 ~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+|.|+|||+|++||+.||++
T Consensus 343 ~CYpHFTcAvDTenIrrVFnD 363 (379)
T KOG0099|consen 343 YCYPHFTCAVDTENIRRVFND 363 (379)
T ss_pred ecccceeEeechHHHHHHHHH
Confidence 799999999999999999987
|
|
| >PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-52 Score=384.36 Aligned_cols=234 Identities=52% Similarity=0.875 Sum_probs=208.8
Q ss_pred CCCCHHHHHHHHhhhhccCCCC--------CCcHHHHHHHHHhcCChHHHHHHhcccccccccchhHHHhhccccCCCCC
Q psy6623 4 TSLDTTDAKMVFDVIQRMEDTE--------PFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEY 75 (262)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~i~~lw~d~~v~~~~~~~~~~~l~d~~~yfl~~l~ri~~~~y 75 (262)
+|.++..+..++.......... .+++++++.|..||+||+||+||.++++++|+|+++|||++++||++++|
T Consensus 129 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~LW~D~~vq~~~~~~~~~~l~d~~~YFl~~l~RI~~~~Y 208 (389)
T PF00503_consen 129 NEENQEIAEKLKEILDPLDSSEFSLASDDNKFPEELAEDIRSLWKDPGVQECYERRNEFQLPDNAKYFLDNLDRIAQPDY 208 (389)
T ss_dssp STTHHHHHHHHHHHHCTTSTTCTC-----HCHHHHHHHHHHHHHHSHHHHHHHGGGGGST--TTHHHHHTTHHHHHSTTB
T ss_pred CHHHHHHHHHHHhhhccccccccccccccccCCHHHHHHHHHHHCChhHHHHHHhhhcccccccHHHHhhhhhhhcCCCc
Confidence 5677788888888876655432 48999999999999999999999999999999999999999999999999
Q ss_pred CcCccccceeeecccceeEEEEee-eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHH
Q psy6623 76 QPTEQDILRTRVKTTGIVEVHFSF-KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQES 154 (262)
Q Consensus 76 ~pt~~Dil~~~~pT~Gi~~~~~~~-~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~ 154 (262)
.||.+||+++|.+|+|+.+..|.+ ++..+.++|+|||+.+|++|.+||+++++||||+++|+|||++.|+++.|++.++
T Consensus 209 ~PT~~DIl~~r~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~es 288 (389)
T PF00503_consen 209 IPTDEDILRCRVKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHES 288 (389)
T ss_dssp ---HHHHHHS----SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHH
T ss_pred cCCCCCeeeecCCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHH
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCC-CcccCCCCCCC--Ccch--hHHHHHHhhh--------ccceee
Q psy6623 155 LKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSP-LTICFPEYAGK--RPGE--RNRMQESLKL--------FDSICN 221 (262)
Q Consensus 155 ~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~-l~~~fp~~~g~--~~~~--~~~i~~~f~~--------~~~~~~ 221 (262)
+.+|+++++++++.++|++||+||.|++.+|+...+ +.+|||+|.|+ ++.+ .+||.++|.+ +.+|+|
T Consensus 289 l~lF~~i~~~~~~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h 368 (389)
T PF00503_consen 289 LNLFESICNNPWFKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVH 368 (389)
T ss_dssp HHHHHHHHTSGGGTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEE
T ss_pred HHHHHHHHhCcccccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEE
Confidence 999999999999999999999999999999999998 99999999997 5555 9999999986 567999
Q ss_pred cccccccceeeeeehh
Q psy6623 222 NKWFTDTSIILFLNKK 237 (262)
Q Consensus 222 ~tsA~d~~~I~~~f~~ 237 (262)
+|||+|+++|+.+|+.
T Consensus 369 ~t~a~d~~~~~~v~~~ 384 (389)
T PF00503_consen 369 FTCATDTENIRKVFNA 384 (389)
T ss_dssp EESTTSHHHHHHHHHH
T ss_pred EeeecccHHHHHHHHH
Confidence 9999999999999975
|
G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B .... |
| >KOG0070|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-27 Score=189.49 Aligned_cols=145 Identities=24% Similarity=0.374 Sum_probs=120.8
Q ss_pred CCcCccccceeeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHH
Q psy6623 75 YQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQES 154 (262)
Q Consensus 75 y~pt~~Dil~~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~ 154 (262)
|+-...+++.. .||+|++++++.+++++|++||+|||++.|.+|.+||++.+++|||+|.+| ..|+.++
T Consensus 35 ykLk~~E~vtt-vPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~D----------r~Ri~ea 103 (181)
T KOG0070|consen 35 YKLKLGEIVTT-VPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSD----------RERIEEA 103 (181)
T ss_pred EeeccCCcccC-CCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCc----------HHHHHHH
Confidence 33334444434 899999999999999999999999999999999999999999999999999 8999999
Q ss_pred HHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeee
Q psy6623 155 LKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFL 234 (262)
Q Consensus 155 ~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~ 234 (262)
.+.+..+++++.+.++|+++++||+|+++. +...++.. ..-...+..+.|+++.|||.+|+++.+.
T Consensus 104 k~eL~~~l~~~~l~~~~llv~aNKqD~~~a-ls~~ei~~-------------~L~l~~l~~~~w~iq~~~a~~G~GL~eg 169 (181)
T KOG0070|consen 104 KEELHRMLAEPELRNAPLLVFANKQDLPGA-LSAAEITN-------------KLGLHSLRSRNWHIQSTCAISGEGLYEG 169 (181)
T ss_pred HHHHHHHHcCcccCCceEEEEechhhcccc-CCHHHHHh-------------HhhhhccCCCCcEEeeccccccccHHHH
Confidence 999999999998999999999999999863 22222221 1222344458999999999999999999
Q ss_pred ehhhHHHhhccC
Q psy6623 235 NKKDLFEEKIKK 246 (262)
Q Consensus 235 f~~~lL~~~i~~ 246 (262)
+ +||.+.+.+
T Consensus 170 l--~wl~~~~~~ 179 (181)
T KOG0070|consen 170 L--DWLSNNLKK 179 (181)
T ss_pred H--HHHHHHHhc
Confidence 9 688777654
|
|
| >KOG0071|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-27 Score=180.92 Aligned_cols=133 Identities=21% Similarity=0.339 Sum_probs=116.0
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
.+||+|++++++++++++|++||+|||.+.|..|.|||.+.+|+|||+|.++ .++++++...+.++++++
T Consensus 45 ~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~----------~dr~eeAr~ELh~ii~~~ 114 (180)
T KOG0071|consen 45 TIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSAD----------RDRIEEARNELHRIINDR 114 (180)
T ss_pred cccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccc----------hhhHHHHHHHHHHHhCCH
Confidence 4899999999999999999999999999999999999999999999999998 799999999999999999
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
.+.++|++|++||+|+++. ++..++.++ +-.++.++++|+++.+||.+|.+..+.| .||.+-+
T Consensus 115 em~~~~~LvlANkQDlp~A-~~pqei~d~-------------leLe~~r~~~W~vqp~~a~~gdgL~egl--swlsnn~ 177 (180)
T KOG0071|consen 115 EMRDAIILILANKQDLPDA-MKPQEIQDK-------------LELERIRDRNWYVQPSCALSGDGLKEGL--SWLSNNL 177 (180)
T ss_pred hhhcceEEEEecCcccccc-cCHHHHHHH-------------hccccccCCccEeeccccccchhHHHHH--HHHHhhc
Confidence 9999999999999999874 233333322 1123455699999999999999999999 6776543
|
|
| >KOG0084|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.8e-25 Score=176.66 Aligned_cols=136 Identities=15% Similarity=0.168 Sum_probs=109.5
Q ss_pred ccccCCCCCCcCccccceeeecccceeEEEEee----eccceeeeecCCccccchhhhccccCCCEEEEeeecccccccc
Q psy6623 67 LDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSF----KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVL 142 (262)
Q Consensus 67 l~ri~~~~y~pt~~Dil~~~~pT~Gi~~~~~~~----~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~ 142 (262)
+.|++...|.-+ +..|+|+.+....+ +.++++||||+||++||.+..+||++|||||+|+|+++
T Consensus 26 ~~Rf~~~~f~e~-------~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~----- 93 (205)
T KOG0084|consen 26 LLRFKDDTFTES-------YISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITK----- 93 (205)
T ss_pred hhhhccCCcchh-------hcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEccc-----
Confidence 678888888764 48999987654443 45899999999999999999999999999999999999
Q ss_pred ccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccce-ee
Q psy6623 143 HEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSI-CN 221 (262)
Q Consensus 143 ~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~-~~ 221 (262)
..++.....|+.++-.. ...++|.+|||||+|+.+++....+..+-|.+- ..+. +.
T Consensus 94 -----~~SF~~v~~Wi~Ei~~~-~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~-----------------~~~~~f~ 150 (205)
T KOG0084|consen 94 -----QESFNNVKRWIQEIDRY-ASENVPKLLVGNKCDLTEKRVVSTEEAQEFADE-----------------LGIPIFL 150 (205)
T ss_pred -----HHHhhhHHHHHHHhhhh-ccCCCCeEEEeeccccHhheecCHHHHHHHHHh-----------------cCCccee
Confidence 78888888888887654 346789999999999998776554443322222 3455 88
Q ss_pred cccccccceeeeeehh
Q psy6623 222 NKWFTDTSIILFLNKK 237 (262)
Q Consensus 222 ~tsA~d~~~I~~~f~~ 237 (262)
+|||+++.||+..|..
T Consensus 151 ETSAK~~~NVe~~F~~ 166 (205)
T KOG0084|consen 151 ETSAKDSTNVEDAFLT 166 (205)
T ss_pred ecccCCccCHHHHHHH
Confidence 9999999999999985
|
|
| >KOG0092|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-23 Score=167.77 Aligned_cols=138 Identities=12% Similarity=0.132 Sum_probs=110.7
Q ss_pred hhccccCCCCCCcCccccceeeecccceeEEE--Eeeec--cceeeeecCCccccchhhhccccCCCEEEEeeecccccc
Q psy6623 65 DDLDRLGAKEYQPTEQDILRTRVKTTGIVEVH--FSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQ 140 (262)
Q Consensus 65 ~~l~ri~~~~y~pt~~Dil~~~~pT~Gi~~~~--~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~ 140 (262)
+-+.|+....|.+.. .||||..+.+ +.+++ ++|.|||||||++|+++-+.||||++++|+|+|+++
T Consensus 20 SlV~Rfvk~~F~e~~-------e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~--- 89 (200)
T KOG0092|consen 20 SLVLRFVKDQFHENI-------EPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITD--- 89 (200)
T ss_pred hhhhhhhhCcccccc-------ccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEeccc---
Confidence 346788888888765 7999965544 44444 889999999999999999999999999999999999
Q ss_pred ccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhcccee
Q psy6623 141 VLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSIC 220 (262)
Q Consensus 141 ~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~ 220 (262)
..+|..+..|++++-.... +++-|.|+|||+||...|-...+.. ..|-.+ ....+
T Consensus 90 -------~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea-------------~~yAe~----~gll~ 144 (200)
T KOG0092|consen 90 -------EESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEA-------------QAYAES----QGLLF 144 (200)
T ss_pred -------HHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHH-------------HHHHHh----cCCEE
Confidence 7999999999999987544 7889999999999987442222111 223333 55789
Q ss_pred ecccccccceeeeeehh
Q psy6623 221 NNKWFTDTSIILFLNKK 237 (262)
Q Consensus 221 ~~tsA~d~~~I~~~f~~ 237 (262)
++||||+|.||.++|.+
T Consensus 145 ~ETSAKTg~Nv~~if~~ 161 (200)
T KOG0092|consen 145 FETSAKTGENVNEIFQA 161 (200)
T ss_pred EEEecccccCHHHHHHH
Confidence 99999999999999974
|
|
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-22 Score=164.49 Aligned_cols=132 Identities=23% Similarity=0.307 Sum_probs=110.5
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
..||+|++...+.+++.++.+||+||+..+|..|.+||++++++|||+|.++ .+++.++.+.+..+++++
T Consensus 42 ~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd----------~~~l~e~~~~L~~ll~~~ 111 (175)
T PF00025_consen 42 TIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSD----------PERLQEAKEELKELLNDP 111 (175)
T ss_dssp EEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTG----------GGGHHHHHHHHHHHHTSG
T ss_pred cCcccccccceeeeCcEEEEEEeccccccccccceeeccccceeEEEEeccc----------ceeecccccchhhhcchh
Confidence 5899999999999999999999999999999999999999999999999998 789999999999999988
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhh-hccceeecccccccceeeeeehhhHHHhh
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLK-LFDSICNNKWFTDTSIILFLNKKDLFEEK 243 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~-~~~~~~~~tsA~d~~~I~~~f~~~lL~~~ 243 (262)
...++|++|++||+|+.+. +...++...+ ....+. .+++.++.|||++|+||.++| +||.+.
T Consensus 112 ~~~~~piLIl~NK~D~~~~-~~~~~i~~~l-------------~l~~l~~~~~~~v~~~sa~~g~Gv~e~l--~WL~~~ 174 (175)
T PF00025_consen 112 ELKDIPILILANKQDLPDA-MSEEEIKEYL-------------GLEKLKNKRPWSVFSCSAKTGEGVDEGL--EWLIEQ 174 (175)
T ss_dssp GGTTSEEEEEEESTTSTTS-STHHHHHHHT-------------TGGGTTSSSCEEEEEEBTTTTBTHHHHH--HHHHHH
T ss_pred hcccceEEEEeccccccCc-chhhHHHhhh-------------hhhhcccCCceEEEeeeccCCcCHHHHH--HHHHhc
Confidence 8889999999999998652 1111111110 011122 378999999999999999999 688765
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >KOG0073|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-22 Score=158.65 Aligned_cols=136 Identities=20% Similarity=0.274 Sum_probs=114.4
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
..||.|++..+..+++.++++||+|||...|+.|.+||+.++|+|+|+|+|| ..|+++....++.++...
T Consensus 44 i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD----------~~r~~e~~~~L~~lL~ee 113 (185)
T KOG0073|consen 44 ISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSD----------RMRMQECKQELTELLVEE 113 (185)
T ss_pred cCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECch----------HHHHHHHHHHHHHHHhhh
Confidence 4799999999999999999999999999999999999999999999999999 899999999999999988
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhcc
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK 245 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~ 245 (262)
.+..+|++|++||+|+... +....+.. .--+.+.++...|....|||.+|+++.+.| +||-..+.
T Consensus 114 rlaG~~~Lvlank~dl~~~-l~~~~i~~------------~~~L~~l~ks~~~~l~~cs~~tge~l~~gi--dWL~~~l~ 178 (185)
T KOG0073|consen 114 RLAGAPLLVLANKQDLPGA-LSLEEISK------------ALDLEELAKSHHWRLVKCSAVTGEDLLEGI--DWLCDDLM 178 (185)
T ss_pred hhcCCceEEEEecCcCccc-cCHHHHHH------------hhCHHHhccccCceEEEEeccccccHHHHH--HHHHHHHH
Confidence 8889999999999999742 22222211 111233345577889999999999999999 78776654
Q ss_pred C
Q psy6623 246 K 246 (262)
Q Consensus 246 ~ 246 (262)
+
T Consensus 179 ~ 179 (185)
T KOG0073|consen 179 S 179 (185)
T ss_pred H
Confidence 3
|
|
| >KOG0094|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-22 Score=161.75 Aligned_cols=138 Identities=16% Similarity=0.193 Sum_probs=110.6
Q ss_pred hccccCCCCCCcCccccceeeecccceeEEEEee----eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccc
Q psy6623 66 DLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSF----KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQV 141 (262)
Q Consensus 66 ~l~ri~~~~y~pt~~Dil~~~~pT~Gi~~~~~~~----~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~ 141 (262)
-+.|++-..|.- .|.+|||+.+...++ ..+.|++|||+|||+||++-+.|++++.++|.|+|+++
T Consensus 38 lItRf~yd~fd~-------~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~---- 106 (221)
T KOG0094|consen 38 LITRFMYDKFDN-------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITD---- 106 (221)
T ss_pred HHHHHHHhhhcc-------cccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccc----
Confidence 356666666654 348899987765554 35889999999999999999999999999999999999
Q ss_pred cccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceee
Q psy6623 142 LHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICN 221 (262)
Q Consensus 142 ~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~ 221 (262)
.++|+...+|++.+.+.....++-|+|||||.||.+++-.... --..+.+.....+.
T Consensus 107 ------~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~e-----------------Eg~~kAkel~a~f~ 163 (221)
T KOG0094|consen 107 ------RNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIE-----------------EGERKAKELNAEFI 163 (221)
T ss_pred ------cchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHH-----------------HHHHHHHHhCcEEE
Confidence 8999999999999998877777999999999999875422211 11123333556788
Q ss_pred cccccccceeeeeehh
Q psy6623 222 NKWFTDTSIILFLNKK 237 (262)
Q Consensus 222 ~tsA~d~~~I~~~f~~ 237 (262)
+|||+.|.||+.+|..
T Consensus 164 etsak~g~NVk~lFrr 179 (221)
T KOG0094|consen 164 ETSAKAGENVKQLFRR 179 (221)
T ss_pred EecccCCCCHHHHHHH
Confidence 9999999999999985
|
|
| >KOG0078|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-22 Score=164.90 Aligned_cols=146 Identities=16% Similarity=0.091 Sum_probs=112.2
Q ss_pred ccchhHHHhhccccCCCCCCcCccccceeeecccceeEEEEe--e--eccceeeeecCCccccchhhhccccCCCEEEEe
Q psy6623 57 NDSAKYFLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFS--F--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFC 132 (262)
Q Consensus 57 ~d~~~yfl~~l~ri~~~~y~pt~~Dil~~~~pT~Gi~~~~~~--~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv 132 (262)
.|+..=--.-+.|+..+.|.++. ..|+||...... . ..+++++|||+||+++|.+...||+++.+|++|
T Consensus 19 GDs~vGKt~~l~rf~d~~f~~~~-------~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~Lv 91 (207)
T KOG0078|consen 19 GDSGVGKTCLLLRFSDDSFNTSF-------ISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLV 91 (207)
T ss_pred CCCCCchhHhhhhhhhccCcCCc-------cceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEE
Confidence 45533222336788888888765 889998765443 3 358899999999999999999999999999999
Q ss_pred eeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHH
Q psy6623 133 VAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQES 212 (262)
Q Consensus 133 ~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~ 212 (262)
||+++ ..+++....|++.+-.+ ...++|++|||||+|+..+|....+. -++.
T Consensus 92 yDitn----------e~Sfeni~~W~~~I~e~-a~~~v~~~LvGNK~D~~~~R~V~~e~-----------------ge~l 143 (207)
T KOG0078|consen 92 YDITN----------EKSFENIRNWIKNIDEH-ASDDVVKILVGNKCDLEEKRQVSKER-----------------GEAL 143 (207)
T ss_pred EEccc----------hHHHHHHHHHHHHHHhh-CCCCCcEEEeeccccccccccccHHH-----------------HHHH
Confidence 99999 67888888877666554 34589999999999998755443322 1222
Q ss_pred hhhccceeecccccccceeeeeehh
Q psy6623 213 LKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 213 f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
..+..+.+++|||++|.||.+.|-.
T Consensus 144 A~e~G~~F~EtSAk~~~NI~eaF~~ 168 (207)
T KOG0078|consen 144 AREYGIKFFETSAKTNFNIEEAFLS 168 (207)
T ss_pred HHHhCCeEEEccccCCCCHHHHHHH
Confidence 2236789999999999999999975
|
|
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-21 Score=161.33 Aligned_cols=131 Identities=24% Similarity=0.399 Sum_probs=103.8
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|++...+..+++.+++||++||++++.+|.+||++++++|||+|+++ ..++.++..++..+++...
T Consensus 46 ~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~----------~~s~~~~~~~l~~~l~~~~ 115 (181)
T PLN00223 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RDRVVEARDELHRMLNEDE 115 (181)
T ss_pred cCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCc----------HHHHHHHHHHHHHHhcCHh
Confidence 689998888888888999999999999999999999999999999999998 6788999999999987766
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHH-HHhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQ-ESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~-~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
..++|++|++||+|+.... ....+. +.+. ..+..+.+++.+|||++|+||.++|+ ||...+
T Consensus 116 ~~~~piilv~NK~Dl~~~~-~~~~~~--------------~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~--~l~~~~ 177 (181)
T PLN00223 116 LRDAVLLVFANKQDLPNAM-NAAEIT--------------DKLGLHSLRQRHWYIQSTCATSGEGLYEGLD--WLSNNI 177 (181)
T ss_pred hCCCCEEEEEECCCCCCCC-CHHHHH--------------HHhCccccCCCceEEEeccCCCCCCHHHHHH--HHHHHH
Confidence 6789999999999986521 111111 1110 11122567788899999999999994 565544
|
|
| >KOG0087|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.6e-22 Score=162.47 Aligned_cols=147 Identities=14% Similarity=0.149 Sum_probs=116.6
Q ss_pred cccchhHHHhhccccCCCCCCcCccccceeeecccceeEEEEee----eccceeeeecCCccccchhhhccccCCCEEEE
Q psy6623 56 LNDSAKYFLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSF----KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIF 131 (262)
Q Consensus 56 l~d~~~yfl~~l~ri~~~~y~pt~~Dil~~~~pT~Gi~~~~~~~----~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIf 131 (262)
+.||+.==-+.+.|+..++|.+.. .+|+|+...+..+ +-++.+||||+||++||.+...||+++.|+++
T Consensus 20 iGDS~VGKsnLlsRftrnEF~~~S-------ksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAll 92 (222)
T KOG0087|consen 20 IGDSAVGKSNLLSRFTRNEFSLES-------KSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 92 (222)
T ss_pred eCCCccchhHHHHHhcccccCccc-------ccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEE
Confidence 466765556778999999998855 8999987665443 34889999999999999999999999999999
Q ss_pred eeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHH
Q psy6623 132 CVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQE 211 (262)
Q Consensus 132 v~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~ 211 (262)
|+|++. ...++....|++++..+. -.+++++|+|||+||-.-|....+..+-|. +.
T Consensus 93 VYDITr----------~~Tfenv~rWL~ELRdha-d~nivimLvGNK~DL~~lraV~te~~k~~A-------------e~ 148 (222)
T KOG0087|consen 93 VYDITR----------RQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLNHLRAVPTEDGKAFA-------------EK 148 (222)
T ss_pred EEechh----------HHHHHHHHHHHHHHHhcC-CCCeEEEEeecchhhhhccccchhhhHhHH-------------Hh
Confidence 999998 778888888888887664 368999999999999764333333222222 21
Q ss_pred Hhhhccceeecccccccceeeeeehh
Q psy6623 212 SLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 212 ~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
..+++++|||.++.||..+|..
T Consensus 149 ----~~l~f~EtSAl~~tNVe~aF~~ 170 (222)
T KOG0087|consen 149 ----EGLFFLETSALDATNVEKAFER 170 (222)
T ss_pred ----cCceEEEecccccccHHHHHHH
Confidence 3478999999999999999964
|
|
| >KOG0072|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-21 Score=150.41 Aligned_cols=136 Identities=22% Similarity=0.274 Sum_probs=115.1
Q ss_pred eeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 85 ~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
...||+|++.+.+.+++.++++||++||-+.|..|..||.+++++|||||.+| ..++.-+...|..++..
T Consensus 45 ttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd----------~dris~a~~el~~mL~E 114 (182)
T KOG0072|consen 45 TTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSD----------RDRISIAGVELYSMLQE 114 (182)
T ss_pred ccCCCCCcCccccccccccceeeEccCcccccHHHHHHhcccceEEEEEeccc----------hhhhhhhHHHHHHHhcc
Confidence 45899999999999999999999999999999999999999999999999999 78889999999999999
Q ss_pred CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 165 KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
+.+.++-++||+||+|.... +...+.. ...-..+.++|.|.++.+||..|+|++.+. +||...+
T Consensus 115 ~eLq~a~llv~anKqD~~~~-~t~~E~~-------------~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~--DWL~~~l 178 (182)
T KOG0072|consen 115 EELQHAKLLVFANKQDYSGA-LTRSEVL-------------KMLGLQKLKDRIWQIVKTSAVKGEGLDPAM--DWLQRPL 178 (182)
T ss_pred HhhcCceEEEEeccccchhh-hhHHHHH-------------HHhChHHHhhheeEEEeeccccccCCcHHH--HHHHHHH
Confidence 99999999999999998652 2111110 111123445578999999999999999999 7998876
Q ss_pred cC
Q psy6623 245 KK 246 (262)
Q Consensus 245 ~~ 246 (262)
++
T Consensus 179 ~~ 180 (182)
T KOG0072|consen 179 KS 180 (182)
T ss_pred hc
Confidence 54
|
|
| >KOG0075|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.9e-21 Score=147.81 Aligned_cols=130 Identities=22% Similarity=0.306 Sum_probs=112.4
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
..||+|++..+++-+++++.+||+|||+++|++|..|++++++++||+|.++ ...+.-+...+.+++..+
T Consensus 49 miptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad----------~~k~~~sr~EL~~LL~k~ 118 (186)
T KOG0075|consen 49 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAAD----------PDKLEASRSELHDLLDKP 118 (186)
T ss_pred hcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCC----------cccchhhHHHHHHHhcch
Confidence 3899999999999999999999999999999999999999999999999999 788999999999999999
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHH----HhhhccceeecccccccceeeeeehhhHHH
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQE----SLKLFDSICNNKWFTDTSIILFLNKKDLFE 241 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~----~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~ 241 (262)
.+.+.|++|+|||.|+++. +.. ...|.. ...+|.+-++.+||++..||+.+. +||.
T Consensus 119 ~l~gip~LVLGnK~d~~~A-L~~-----------------~~li~rmgL~sitdREvcC~siScke~~Nid~~~--~Wli 178 (186)
T KOG0075|consen 119 SLTGIPLLVLGNKIDLPGA-LSK-----------------IALIERMGLSSITDREVCCFSISCKEKVNIDITL--DWLI 178 (186)
T ss_pred hhcCCcEEEecccccCccc-ccH-----------------HHHHHHhCccccccceEEEEEEEEcCCccHHHHH--HHHH
Confidence 9999999999999998762 222 222222 233489999999999999999888 7887
Q ss_pred hhcc
Q psy6623 242 EKIK 245 (262)
Q Consensus 242 ~~i~ 245 (262)
+..+
T Consensus 179 ~hsk 182 (186)
T KOG0075|consen 179 EHSK 182 (186)
T ss_pred HHhh
Confidence 7643
|
|
| >KOG0098|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-21 Score=156.93 Aligned_cols=136 Identities=16% Similarity=0.179 Sum_probs=106.8
Q ss_pred ccccCCCCCCcCccccceeeecccceeEE--EEee--eccceeeeecCCccccchhhhccccCCCEEEEeeecccccccc
Q psy6623 67 LDRLGAKEYQPTEQDILRTRVKTTGIVEV--HFSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVL 142 (262)
Q Consensus 67 l~ri~~~~y~pt~~Dil~~~~pT~Gi~~~--~~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~ 142 (262)
+.|++...|.|-. ..|+|+... .+.+ +.+++++|||+||+++|+....||+++.|+|+|+|++.
T Consensus 23 llrf~~krF~~~h-------d~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~----- 90 (216)
T KOG0098|consen 23 LLRFTDKRFQPVH-------DLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITR----- 90 (216)
T ss_pred HHHHhccCccccc-------cceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccc-----
Confidence 5678888888844 578886542 3333 57999999999999999999999999999999999998
Q ss_pred ccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeec
Q psy6623 143 HEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNN 222 (262)
Q Consensus 143 ~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~ 222 (262)
.+++..--.|+..+.++. ..|..|+|+|||+||...+-.+.+....|+ ++ +.+.+.+
T Consensus 91 -----r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA-------------~e----hgLifmE 147 (216)
T KOG0098|consen 91 -----RESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARREVSKEEGEAFA-------------RE----HGLIFME 147 (216)
T ss_pred -----hhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhccccccHHHHHHHH-------------HH----cCceeeh
Confidence 677777777777777653 468999999999999876644433333333 32 4466779
Q ss_pred ccccccceeeeeehh
Q psy6623 223 KWFTDTSIILFLNKK 237 (262)
Q Consensus 223 tsA~d~~~I~~~f~~ 237 (262)
|||++++||+++|..
T Consensus 148 TSakt~~~VEEaF~n 162 (216)
T KOG0098|consen 148 TSAKTAENVEEAFIN 162 (216)
T ss_pred hhhhhhhhHHHHHHH
Confidence 999999999999986
|
|
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-20 Score=154.55 Aligned_cols=131 Identities=24% Similarity=0.376 Sum_probs=102.5
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|+....+..+++.+.+||++|+++++.+|.+||++++++|||+|+++ ..++.++.+++..+++...
T Consensus 42 ~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~----------~~s~~~~~~~l~~~~~~~~ 111 (175)
T smart00177 42 IPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSND----------RDRIDEAREELHRMLNEDE 111 (175)
T ss_pred CCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHhhCHh
Confidence 588888877777788999999999999999999999999999999999998 6789999999999987655
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhh
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEK 243 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~ 243 (262)
..++|++|++||+|+.+.. ...++... .| ......+.++++.|||++|+||.++|+ ||.+.
T Consensus 112 ~~~~piilv~NK~Dl~~~~-~~~~i~~~----~~---------~~~~~~~~~~~~~~Sa~~g~gv~e~~~--~l~~~ 172 (175)
T smart00177 112 LRDAVILVFANKQDLPDAM-KAAEITEK----LG---------LHSIRDRNWYIQPTCATSGDGLYEGLT--WLSNN 172 (175)
T ss_pred hcCCcEEEEEeCcCcccCC-CHHHHHHH----hC---------ccccCCCcEEEEEeeCCCCCCHHHHHH--HHHHH
Confidence 6689999999999986421 11111110 00 011122567788999999999999995 66554
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.9e-21 Score=154.85 Aligned_cols=126 Identities=24% Similarity=0.359 Sum_probs=99.0
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|++...+..+++.+.+||++||++++.+|..||++++++|||+|+++ ..++.++.+++.+++....
T Consensus 29 ~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~----------~~s~~~~~~~~~~~~~~~~ 98 (159)
T cd04150 29 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RERIGEAREELQRMLNEDE 98 (159)
T ss_pred CCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhcHH
Confidence 578888777777788999999999999999999999999999999999998 6789999999999987666
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
..++|++|++||+|+... ....++.. .+-.+.+..+.++++++||++|+||+++|+
T Consensus 99 ~~~~piilv~NK~Dl~~~-~~~~~i~~-------------~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~ 154 (159)
T cd04150 99 LRDAVLLVFANKQDLPNA-MSAAEVTD-------------KLGLHSLRNRNWYIQATCATSGDGLYEGLD 154 (159)
T ss_pred hcCCCEEEEEECCCCCCC-CCHHHHHH-------------HhCccccCCCCEEEEEeeCCCCCCHHHHHH
Confidence 677999999999998542 11111110 000011223567788999999999999994
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >KOG0076|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-21 Score=154.68 Aligned_cols=163 Identities=21% Similarity=0.272 Sum_probs=131.8
Q ss_pred ccchh--HHHhhccccCCCCCCcCccccceeeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeee
Q psy6623 57 NDSAK--YFLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVA 134 (262)
Q Consensus 57 ~d~~~--yfl~~l~ri~~~~y~pt~~Dil~~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~d 134 (262)
+|++. .||+..+..+...|.--.-+ ...||+|.+..++.+.+..+.+||.|||+.-|++|..||..+|++||++|
T Consensus 25 ldnAGKttfLe~~Kt~~~~~~~~l~~~---ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viD 101 (197)
T KOG0076|consen 25 LDNAGKTTFLEALKTDFSKAYGGLNPS---KITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVID 101 (197)
T ss_pred cccCCchhHHHHHHHHHHhhhcCCCHH---HeecccceeecceeeccceeEEEEcCChHHHHHHHHHHHHHhceeEEeec
Confidence 35553 69998888777666533211 23799999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhh
Q psy6623 135 MSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLK 214 (262)
Q Consensus 135 ls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~ 214 (262)
.++ .+|++++...|++++.+....++|+++++||+|+.++ +...++...|.. .+...
T Consensus 102 a~~----------~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~-~~~~El~~~~~~------------~e~~~ 158 (197)
T KOG0076|consen 102 ATD----------RERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA-MEAAELDGVFGL------------AELIP 158 (197)
T ss_pred CCC----------HHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh-hhHHHHHHHhhh------------hhhcC
Confidence 998 8999999999999999999999999999999999763 222233222211 12222
Q ss_pred hccceeecccccccceeeeeehhhHHHhhccCC
Q psy6623 215 LFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 247 (262)
Q Consensus 215 ~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~~~ 247 (262)
++...+..+||.+|+||++.. .|++.++.++
T Consensus 159 ~rd~~~~pvSal~gegv~egi--~w~v~~~~kn 189 (197)
T KOG0076|consen 159 RRDNPFQPVSALTGEGVKEGI--EWLVKKLEKN 189 (197)
T ss_pred CccCccccchhhhcccHHHHH--HHHHHHHhhc
Confidence 266778899999999999999 7999988775
|
|
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-20 Score=156.10 Aligned_cols=124 Identities=14% Similarity=0.124 Sum_probs=90.0
Q ss_pred eccccee--EEEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIV--EVHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~--~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.+|+|.. ...+.+++ +++++||++||++++.+|..||++++++|+|+|+++ ..++++...|+..+.
T Consensus 30 ~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd----------~~Sf~~l~~w~~~i~ 99 (202)
T cd04120 30 KSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITK----------KETFDDLPKWMKMID 99 (202)
T ss_pred CCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 4565543 34455544 889999999999999999999999999999999999 788888877766543
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+ ....++|++|+|||+|+..++...... + .++..+ . +.+.+++|||++|.||.++|..
T Consensus 100 ~-~~~~~~piilVgNK~DL~~~~~v~~~~--------~-----~~~a~~-~--~~~~~~etSAktg~gV~e~F~~ 157 (202)
T cd04120 100 K-YASEDAELLLVGNKLDCETDREISRQQ--------G-----EKFAQQ-I--TGMRFCEASAKDNFNVDEIFLK 157 (202)
T ss_pred H-hCCCCCcEEEEEECcccccccccCHHH--------H-----HHHHHh-c--CCCEEEEecCCCCCCHHHHHHH
Confidence 3 334679999999999986422111000 0 111111 0 2466889999999999999964
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-20 Score=151.99 Aligned_cols=128 Identities=22% Similarity=0.401 Sum_probs=99.9
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|+....+...++++++||++|+++++.+|..||++++++|||+|+++ ..++.++..++.++++...
T Consensus 38 ~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~----------~~s~~~~~~~~~~~~~~~~ 107 (168)
T cd04149 38 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSAD----------RDRIDEARQELHRIINDRE 107 (168)
T ss_pred cCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCc----------hhhHHHHHHHHHHHhcCHh
Confidence 578888777777788999999999999999999999999999999999998 6789999999999987655
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHH-HHhhhccceeecccccccceeeeeehhhHHH
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQ-ESLKLFDSICNNKWFTDTSIILFLNKKDLFE 241 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~-~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~ 241 (262)
..++|++|++||+|+... ....++ .+++. .+...+.+.+++|||++|+||.++|+ ||.
T Consensus 108 ~~~~piilv~NK~Dl~~~-~~~~~i--------------~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~--~l~ 166 (168)
T cd04149 108 MRDALLLVFANKQDLPDA-MKPHEI--------------QEKLGLTRIRDRNWYVQPSCATSGDGLYEGLT--WLS 166 (168)
T ss_pred hcCCcEEEEEECcCCccC-CCHHHH--------------HHHcCCCccCCCcEEEEEeeCCCCCChHHHHH--HHh
Confidence 678999999999998641 111111 11110 01122456788999999999999994 553
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >KOG0080|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-20 Score=147.87 Aligned_cols=147 Identities=18% Similarity=0.155 Sum_probs=105.4
Q ss_pred hhccccCCCCCCcCccccceeeecccceeEEE--Eee--eccceeeeecCCccccchhhhccccCCCEEEEeeecccccc
Q psy6623 65 DDLDRLGAKEYQPTEQDILRTRVKTTGIVEVH--FSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQ 140 (262)
Q Consensus 65 ~~l~ri~~~~y~pt~~Dil~~~~pT~Gi~~~~--~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~ 140 (262)
+-+-|+..+.|.|.. ..|+|+.+.. +.+ +.+++.||||+||++||.+.++||+++.|||.|+|++.-|.
T Consensus 26 SLllrFv~~~fd~~~-------~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdt 98 (209)
T KOG0080|consen 26 SLLLRFVSNTFDDLH-------PTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDT 98 (209)
T ss_pred HHHHHHHhcccCccC-------CceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhh
Confidence 345677888887755 5569976543 344 35789999999999999999999999999999999998221
Q ss_pred ccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhcccee
Q psy6623 141 VLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSIC 220 (262)
Q Consensus 141 ~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~ 220 (262)
...+.-|++.++..+. ..++-.+||+||+|...+|....+. | ++|.++ +++.+
T Consensus 99 -------f~kLd~W~~Eld~Yst---n~diikmlVgNKiDkes~R~V~reE--------G-----~kfAr~----h~~LF 151 (209)
T KOG0080|consen 99 -------FVKLDIWLKELDLYST---NPDIIKMLVGNKIDKESERVVDREE--------G-----LKFARK----HRCLF 151 (209)
T ss_pred -------HHhHHHHHHHHHhhcC---CccHhHhhhcccccchhcccccHHH--------H-----HHHHHh----hCcEE
Confidence 2333444444444443 3578889999999976554433211 1 555555 67889
Q ss_pred ecccccccceeeeeehhhHHHhhccC
Q psy6623 221 NNKWFTDTSIILFLNKKDLFEEKIKK 246 (262)
Q Consensus 221 ~~tsA~d~~~I~~~f~~~lL~~~i~~ 246 (262)
+++||++.+||+..|+. +.++.+..
T Consensus 152 iE~SAkt~~~V~~~Fee-lveKIi~t 176 (209)
T KOG0080|consen 152 IECSAKTRENVQCCFEE-LVEKIIET 176 (209)
T ss_pred EEcchhhhccHHHHHHH-HHHHHhcC
Confidence 99999999999999984 55555443
|
|
| >KOG0095|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.9e-21 Score=146.83 Aligned_cols=136 Identities=17% Similarity=0.186 Sum_probs=104.7
Q ss_pred ccccCCCCCCcCccccceeeecccceeEE--EEee--eccceeeeecCCccccchhhhccccCCCEEEEeeecccccccc
Q psy6623 67 LDRLGAKEYQPTEQDILRTRVKTTGIVEV--HFSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVL 142 (262)
Q Consensus 67 l~ri~~~~y~pt~~Dil~~~~pT~Gi~~~--~~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~ 142 (262)
+.|+.+.-|.|-. ..|+|+... ++++ ..++++||||+||++||++..+||+.++++|+|+|+|-
T Consensus 24 vrrftqglfppgq-------gatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydisc----- 91 (213)
T KOG0095|consen 24 VRRFTQGLFPPGQ-------GATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISC----- 91 (213)
T ss_pred hhhhhccCCCCCC-------CceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEeccc-----
Confidence 5678888888876 678887654 3444 35899999999999999999999999999999999997
Q ss_pred ccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeec
Q psy6623 143 HEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNN 222 (262)
Q Consensus 143 ~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~ 222 (262)
.++...+.+|+..+++..++ ++--+||+||.|+-+++-....+.. +|-.. ...|+.+
T Consensus 92 --qpsfdclpewlreie~yan~----kvlkilvgnk~d~~drrevp~qige-------------efs~~----qdmyfle 148 (213)
T KOG0095|consen 92 --QPSFDCLPEWLREIEQYANN----KVLKILVGNKIDLADRREVPQQIGE-------------EFSEA----QDMYFLE 148 (213)
T ss_pred --CcchhhhHHHHHHHHHHhhc----ceEEEeeccccchhhhhhhhHHHHH-------------HHHHh----hhhhhhh
Confidence 34456777777777777665 4667999999999876533333322 12221 4478889
Q ss_pred ccccccceeeeeehh
Q psy6623 223 KWFTDTSIILFLNKK 237 (262)
Q Consensus 223 tsA~d~~~I~~~f~~ 237 (262)
|||++.+||+.+|..
T Consensus 149 tsakea~nve~lf~~ 163 (213)
T KOG0095|consen 149 TSAKEADNVEKLFLD 163 (213)
T ss_pred hcccchhhHHHHHHH
Confidence 999999999999975
|
|
| >KOG0093|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-20 Score=145.12 Aligned_cols=136 Identities=14% Similarity=0.162 Sum_probs=102.2
Q ss_pred ccccCCCCCCcCccccceeeecccceeEEEEee----eccceeeeecCCccccchhhhccccCCCEEEEeeecccccccc
Q psy6623 67 LDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSF----KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVL 142 (262)
Q Consensus 67 l~ri~~~~y~pt~~Dil~~~~pT~Gi~~~~~~~----~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~ 142 (262)
+-|.+...|.| ++..|+|+.....++ +.+++++|||+||+++|.+...||+++.|+|+++|+++
T Consensus 38 l~ry~ddSFt~-------afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitN----- 105 (193)
T KOG0093|consen 38 LFRYADDSFTS-------AFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN----- 105 (193)
T ss_pred hHHhhcccccc-------ceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCC-----
Confidence 35677777877 458899987665554 45899999999999999999999999999999999998
Q ss_pred ccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeec
Q psy6623 143 HEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNN 222 (262)
Q Consensus 143 ~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~ 222 (262)
.+++.....|...+ ..-...++|+||++||||+..||....+-.. .++.+ ..+-+++
T Consensus 106 -----eeSf~svqdw~tqI-ktysw~naqvilvgnKCDmd~eRvis~e~g~-------------~l~~~----LGfefFE 162 (193)
T KOG0093|consen 106 -----EESFNSVQDWITQI-KTYSWDNAQVILVGNKCDMDSERVISHERGR-------------QLADQ----LGFEFFE 162 (193)
T ss_pred -----HHHHHHHHHHHHHh-eeeeccCceEEEEecccCCccceeeeHHHHH-------------HHHHH----hChHHhh
Confidence 33443333333333 2223468999999999999998876654322 22222 3456889
Q ss_pred ccccccceeeeeehh
Q psy6623 223 KWFTDTSIILFLNKK 237 (262)
Q Consensus 223 tsA~d~~~I~~~f~~ 237 (262)
||||...||+.+|..
T Consensus 163 tSaK~NinVk~~Fe~ 177 (193)
T KOG0093|consen 163 TSAKENINVKQVFER 177 (193)
T ss_pred hcccccccHHHHHHH
Confidence 999999999999986
|
|
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7e-20 Score=150.94 Aligned_cols=132 Identities=22% Similarity=0.376 Sum_probs=101.8
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|.+...+...++.+++||++|+++++.+|.+||++++++|||+|+++ .+++.++..++..++....
T Consensus 46 ~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~----------~~s~~~~~~~l~~~~~~~~ 115 (182)
T PTZ00133 46 IPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSND----------RERIGDAREELERMLSEDE 115 (182)
T ss_pred CCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhCHh
Confidence 578888777777788999999999999999999999999999999999998 6788999999999887656
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
..++|++|++||+|+.+. .....+.. .-| ...+..+.+++++|||++|+||+++|+ ||.+.+
T Consensus 116 ~~~~piilv~NK~Dl~~~-~~~~~i~~----~l~---------~~~~~~~~~~~~~~Sa~tg~gv~e~~~--~l~~~i 177 (182)
T PTZ00133 116 LRDAVLLVFANKQDLPNA-MSTTEVTE----KLG---------LHSVRQRNWYIQGCCATTAQGLYEGLD--WLSANI 177 (182)
T ss_pred hcCCCEEEEEeCCCCCCC-CCHHHHHH----HhC---------CCcccCCcEEEEeeeCCCCCCHHHHHH--HHHHHH
Confidence 678999999999998641 11111110 001 011222557778999999999999995 555544
|
|
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.5e-20 Score=148.66 Aligned_cols=134 Identities=20% Similarity=0.282 Sum_probs=102.3
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|+....+..+++++++||++|++.++..|..|+++++++|||+|+++ .+++.++..++..+++...
T Consensus 28 ~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~----------~~s~~~~~~~~~~~~~~~~ 97 (169)
T cd04158 28 IPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSH----------RDRVSEAHSELAKLLTEKE 97 (169)
T ss_pred CCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCc----------HHHHHHHHHHHHHHhcChh
Confidence 578888777778888999999999999999999999999999999999998 6889999999999987655
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhcc
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK 245 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~ 245 (262)
..+.|++|++||+|+..+ .....+.++. ++.+ ....+.+.+.+|||++|.||.++| .||.+.+.
T Consensus 98 ~~~~piilv~NK~Dl~~~-~~~~~~~~~~-~~~~-----------~~~~~~~~~~~~Sa~~g~gv~~~f--~~l~~~~~ 161 (169)
T cd04158 98 LRDALLLIFANKQDVAGA-LSVEEMTELL-SLHK-----------LCCGRSWYIQGCDARSGMGLYEGL--DWLSRQLV 161 (169)
T ss_pred hCCCCEEEEEeCcCcccC-CCHHHHHHHh-CCcc-----------ccCCCcEEEEeCcCCCCCCHHHHH--HHHHHHHh
Confidence 667999999999998642 1111111110 0000 000134677889999999999999 46665543
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-19 Score=149.66 Aligned_cols=122 Identities=12% Similarity=0.014 Sum_probs=92.6
Q ss_pred eccccee--EEEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIV--EVHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~--~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|.. ...+.+++ +.+++||++||++++.+|..||++++++|+|+|+++ ..++.+...|+..+.
T Consensus 36 ~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~----------~~Sf~~~~~w~~~i~ 105 (189)
T cd04121 36 GYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITN----------RWSFDGIDRWIKEID 105 (189)
T ss_pred CCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 3455543 33444443 789999999999999999999999999999999999 889999988888886
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.. ..++|++|+|||.||...+... .+-.........+.+++|||++|.||+++|..
T Consensus 106 ~~--~~~~piilVGNK~DL~~~~~v~-----------------~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~ 161 (189)
T cd04121 106 EH--APGVPKILVGNRLHLAFKRQVA-----------------TEQAQAYAERNGMTFFEVSPLCNFNITESFTE 161 (189)
T ss_pred Hh--CCCCCEEEEEECccchhccCCC-----------------HHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 54 3579999999999996532111 11111222225677899999999999999963
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.9e-20 Score=148.10 Aligned_cols=131 Identities=16% Similarity=0.235 Sum_probs=102.8
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+.||+|+....+..+++++++||++|++.++.+|..||++++++|||+|+++ ..++.++..++..+.+..
T Consensus 27 ~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~----------~~s~~~~~~~l~~l~~~~ 96 (167)
T cd04161 27 VAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSD----------DDRVQEVKEILRELLQHP 96 (167)
T ss_pred ccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCc----------hhHHHHHHHHHHHHHcCc
Confidence 3678888777788889999999999999999999999999999999999998 678999999999998776
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhh---hccceeeccccccc------ceeeeeeh
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLK---LFDSICNNKWFTDT------SIILFLNK 236 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~---~~~~~~~~tsA~d~------~~I~~~f~ 236 (262)
...++|++||+||+|+...+ ...++.+.+ ..+.+. ..++++..|||++| +||.++|
T Consensus 97 ~~~~~piliv~NK~Dl~~~~-~~~~i~~~~-------------~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~- 161 (167)
T cd04161 97 RVSGKPILVLANKQDKKNAL-LGADVIEYL-------------SLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGL- 161 (167)
T ss_pred cccCCcEEEEEeCCCCcCCC-CHHHHHHhc-------------CcccccCCCCceEEEEEeEceeCCCCccccCHHHHH-
Confidence 66789999999999997532 011111100 001111 13578888999998 8999999
Q ss_pred hhHHHh
Q psy6623 237 KDLFEE 242 (262)
Q Consensus 237 ~~lL~~ 242 (262)
.||.+
T Consensus 162 -~wl~~ 166 (167)
T cd04161 162 -RWLLA 166 (167)
T ss_pred -HHHhc
Confidence 68854
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.4e-19 Score=147.11 Aligned_cols=129 Identities=20% Similarity=0.220 Sum_probs=95.1
Q ss_pred eecccceeEEE--Eee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHH
Q psy6623 86 RVKTTGIVEVH--FSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSI 161 (262)
Q Consensus 86 ~~pT~Gi~~~~--~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i 161 (262)
+.||+|+.... +.+ +.+++.||||+||++++.+|..||++++++|+|+|+++ ..++.+...|+..+
T Consensus 9 ~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~----------~~sf~~~~~w~~~i 78 (176)
T PTZ00099 9 YQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITN----------RQSFENTTKWIQDI 78 (176)
T ss_pred CCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCC----------HHHHHHHHHHHHHH
Confidence 35677765533 233 35889999999999999999999999999999999998 67888888888888
Q ss_pred HhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHH
Q psy6623 162 CNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFE 241 (262)
Q Consensus 162 ~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~ 241 (262)
.... ..++|++||+||+||...+. +. .+-.........+.+++|||++|.||.++|. +|.
T Consensus 79 ~~~~-~~~~piilVgNK~DL~~~~~----v~-------------~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~--~l~ 138 (176)
T PTZ00099 79 LNER-GKDVIIALVGNKTDLGDLRK----VT-------------YEEGMQKAQEYNTMFHETSAKAGHNIKVLFK--KIA 138 (176)
T ss_pred HHhc-CCCCeEEEEEECcccccccC----CC-------------HHHHHHHHHHcCCEEEEEECCCCCCHHHHHH--HHH
Confidence 7643 25789999999999964221 10 0111111222446678999999999999995 454
Q ss_pred hhc
Q psy6623 242 EKI 244 (262)
Q Consensus 242 ~~i 244 (262)
..+
T Consensus 139 ~~l 141 (176)
T PTZ00099 139 AKL 141 (176)
T ss_pred HHH
Confidence 444
|
|
| >KOG0091|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.8e-21 Score=149.53 Aligned_cols=148 Identities=9% Similarity=0.053 Sum_probs=109.3
Q ss_pred cccchhHHHhhccccCCCCCCcCccccceeeecccceeEE--EEee---eccceeeeecCCccccchhhhccccCCCEEE
Q psy6623 56 LNDSAKYFLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEV--HFSF---KNLNFKLFDVGGQRSERKKWIHCFEDVTAII 130 (262)
Q Consensus 56 l~d~~~yfl~~l~ri~~~~y~pt~~Dil~~~~pT~Gi~~~--~~~~---~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iI 130 (262)
+.||..-=-.-+.++.+..|.. . +-||+|+... -+++ ..+++++|||+||+++|++..+||+++-|++
T Consensus 14 igdstvgkssll~~ft~gkfae-l------sdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 14 IGDSTVGKSSLLRYFTEGKFAE-L------SDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EcCCcccHHHHHHHHhcCcccc-c------CCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 4566432222244455555532 2 2599997642 2233 2489999999999999999999999999999
Q ss_pred EeeeccccccccccCcccccHHHHHHHHHHHHhCCC-CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHH
Q psy6623 131 FCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW-FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRM 209 (262)
Q Consensus 131 fv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~-~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i 209 (262)
.|+|+++ ..+++....|+++..-+-. ..++.++|||.|+||-..|-...+..+.|+.+
T Consensus 87 lvyditn----------r~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~----------- 145 (213)
T KOG0091|consen 87 LVYDITN----------RESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAAS----------- 145 (213)
T ss_pred EEEeccc----------hhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHh-----------
Confidence 9999999 7888888888888765433 45678899999999987665554444444444
Q ss_pred HHHhhhccceeecccccccceeeeeehh
Q psy6623 210 QESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 210 ~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
..+.+.+|||++|.||++.|..
T Consensus 146 ------hgM~FVETSak~g~NVeEAF~m 167 (213)
T KOG0091|consen 146 ------HGMAFVETSAKNGCNVEEAFDM 167 (213)
T ss_pred ------cCceEEEecccCCCcHHHHHHH
Confidence 4477889999999999999964
|
|
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-19 Score=150.29 Aligned_cols=125 Identities=14% Similarity=0.086 Sum_probs=93.7
Q ss_pred ecccceeEEEEee----eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEVHFSF----KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~~~~~----~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|+......+ +.+++++||++|++.++.+|..||++++++|+|+|+++ ..++.....|...+.
T Consensus 25 ~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~----------~~S~~~i~~w~~~i~ 94 (200)
T smart00176 25 VATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTA----------RVTYKNVPNWHRDLV 94 (200)
T ss_pred CCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCC----------hHHHHHHHHHHHHHH
Confidence 5777766544433 45899999999999999999999999999999999998 677877777777776
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 242 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~ 242 (262)
... .++|++||+||+|+..... .. + ...+. ....+.+++|||++|+||.++|. +|..
T Consensus 95 ~~~--~~~piilvgNK~Dl~~~~v-~~---~-----------~~~~~----~~~~~~~~e~SAk~~~~v~~~F~--~l~~ 151 (200)
T smart00176 95 RVC--ENIPIVLCGNKVDVKDRKV-KA---K-----------SITFH----RKKNLQYYDISAKSNYNFEKPFL--WLAR 151 (200)
T ss_pred HhC--CCCCEEEEEECcccccccC-CH---H-----------HHHHH----HHcCCEEEEEeCCCCCCHHHHHH--HHHH
Confidence 532 5799999999999853211 00 0 01221 22567889999999999999996 4444
Q ss_pred hc
Q psy6623 243 KI 244 (262)
Q Consensus 243 ~i 244 (262)
.+
T Consensus 152 ~i 153 (200)
T smart00176 152 KL 153 (200)
T ss_pred HH
Confidence 33
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >KOG0086|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.9e-20 Score=143.23 Aligned_cols=134 Identities=13% Similarity=0.120 Sum_probs=98.7
Q ss_pred ccccCCCCCCcCccccceeeecccceeEEE--Eee--eccceeeeecCCccccchhhhccccCCCEEEEeeecccccccc
Q psy6623 67 LDRLGAKEYQPTEQDILRTRVKTTGIVEVH--FSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVL 142 (262)
Q Consensus 67 l~ri~~~~y~pt~~Dil~~~~pT~Gi~~~~--~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~ 142 (262)
+.++....|.-.. ..|+|+.+.. +.+ +.++++||||+||++||+...+||+++.|.++|+|+++
T Consensus 26 Lh~Fie~kfkDds-------sHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~Ts----- 93 (214)
T KOG0086|consen 26 LHQFIENKFKDDS-------SHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS----- 93 (214)
T ss_pred HHHHHHhhhcccc-------cceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccc-----
Confidence 3445555554322 6788876543 233 45899999999999999999999999999999999998
Q ss_pred ccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHH-HHhhh-cccee
Q psy6623 143 HEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQ-ESLKL-FDSIC 220 (262)
Q Consensus 143 ~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~-~~f~~-~~~~~ 220 (262)
.+++++.-.|+..+.. -...++.++|++||.||..++-.. |.+ ..|.+ +.+.+
T Consensus 94 -----rdsfnaLtnWL~DaR~-lAs~nIvviL~GnKkDL~~~R~Vt-------------------flEAs~FaqEnel~f 148 (214)
T KOG0086|consen 94 -----RDSFNALTNWLTDART-LASPNIVVILCGNKKDLDPEREVT-------------------FLEASRFAQENELMF 148 (214)
T ss_pred -----hhhHHHHHHHHHHHHh-hCCCcEEEEEeCChhhcChhhhhh-------------------HHHHHhhhcccceee
Confidence 5666666666655542 234578899999999997754222 221 12322 67889
Q ss_pred ecccccccceeeeeehh
Q psy6623 221 NNKWFTDTSIILFLNKK 237 (262)
Q Consensus 221 ~~tsA~d~~~I~~~f~~ 237 (262)
|+|||++|+||++.|-.
T Consensus 149 lETSa~TGeNVEEaFl~ 165 (214)
T KOG0086|consen 149 LETSALTGENVEEAFLK 165 (214)
T ss_pred eeecccccccHHHHHHH
Confidence 99999999999999975
|
|
| >KOG0079|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.5e-20 Score=141.82 Aligned_cols=124 Identities=13% Similarity=0.147 Sum_probs=101.3
Q ss_pred eeecccceeE--EEEee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHH
Q psy6623 85 TRVKTTGIVE--VHFSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDS 160 (262)
Q Consensus 85 ~~~pT~Gi~~--~~~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~ 160 (262)
+|+.|+|+.. .++.+ ..++++|||++||++||.+...||++.+++|.|+|+++ .+++....+|+++
T Consensus 36 sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn----------~ESF~Nv~rWLee 105 (198)
T KOG0079|consen 36 SYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTN----------GESFNNVKRWLEE 105 (198)
T ss_pred ceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcc----------hhhhHhHHHHHHH
Confidence 4578888654 34444 34899999999999999999999999999999999999 8999999999999
Q ss_pred HHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 161 ICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 161 i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+-++- ..+|-+|||||.|+++.|.....-. ..|... ..+-+++|||++.+|++..|.-
T Consensus 106 i~~nc--dsv~~vLVGNK~d~~~RrvV~t~dA-------------r~~A~~----mgie~FETSaKe~~NvE~mF~c 163 (198)
T KOG0079|consen 106 IRNNC--DSVPKVLVGNKNDDPERRVVDTEDA-------------RAFALQ----MGIELFETSAKENENVEAMFHC 163 (198)
T ss_pred HHhcC--ccccceecccCCCCccceeeehHHH-------------HHHHHh----cCchheehhhhhcccchHHHHH
Confidence 98763 4789999999999998765544322 233333 4577899999999999999974
|
|
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=6e-19 Score=146.42 Aligned_cols=121 Identities=14% Similarity=0.203 Sum_probs=82.7
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHH-HHHHHHhCCCCCCCeEEEEeeC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLK-LFDSICNNKWFTDTSIILFLNK 178 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~-~~~~i~~~~~~~~~piil~~NK 178 (262)
+.+.+++|||+||++++.+|..||++++++|+|+|+++ ..+++.... |...+... ..++|++|+|||
T Consensus 49 ~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~----------~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK 116 (191)
T cd01875 49 RTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIAS----------PSSYENVRHKWHPEVCHH--CPNVPILLVGTK 116 (191)
T ss_pred EEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhh--CCCCCEEEEEeC
Confidence 44789999999999999999999999999999999998 678887764 44445432 357999999999
Q ss_pred CchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhcc-ceeecccccccceeeeeehh
Q psy6623 179 KDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFD-SICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 179 ~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~-~~~~~tsA~d~~~I~~~f~~ 237 (262)
+||.+.+-....+... +......+...+...... +.+++|||++|+||+++|..
T Consensus 117 ~DL~~~~~~~~~~~~~-----~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~ 171 (191)
T cd01875 117 KDLRNDADTLKKLKEQ-----GQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAE 171 (191)
T ss_pred hhhhcChhhHHHHhhc-----cCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHH
Confidence 9996532111111100 000000111111111123 57889999999999999963
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >KOG0074|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.2e-19 Score=136.36 Aligned_cols=131 Identities=17% Similarity=0.300 Sum_probs=107.6
Q ss_pred ecccceeEEEEeeec-cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 87 VKTTGIVEVHFSFKN-LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~-~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
.||-|++..++.+.+ +.+++||+|||+..|..|.+||++++++|||+|.+| ..+++|.-+.+-+++...
T Consensus 46 tpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D----------~krfeE~~~el~ELleee 115 (185)
T KOG0074|consen 46 TPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTD----------EKRFEEISEELVELLEEE 115 (185)
T ss_pred cccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCc----------hHhHHHHHHHHHHHhhhh
Confidence 689999999999976 999999999999999999999999999999999888 789999989999998888
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhh
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEK 243 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~ 243 (262)
.+..+|+++++||+|+.... +..++. .+.-....++|.|++..+||..++++.... +|...-
T Consensus 116 Kl~~vpvlIfankQdlltaa-~~eeia-------------~klnl~~lrdRswhIq~csals~eg~~dg~--~wv~sn 177 (185)
T KOG0074|consen 116 KLAEVPVLIFANKQDLLTAA-KVEEIA-------------LKLNLAGLRDRSWHIQECSALSLEGSTDGS--DWVQSN 177 (185)
T ss_pred hhhccceeehhhhhHHHhhc-chHHHH-------------HhcchhhhhhceEEeeeCccccccCccCcc--hhhhcC
Confidence 88899999999999997532 111111 111222334488999999999999998887 565544
|
|
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.9e-19 Score=142.50 Aligned_cols=125 Identities=19% Similarity=0.303 Sum_probs=94.8
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|+....+..+++++.+||++|++.++.+|..||++++++|+|+|+++ ..++..+..++..+....
T Consensus 29 ~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~----------~~s~~~~~~~l~~~~~~~- 97 (164)
T cd04162 29 VPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSAD----------SERLPLARQELHQLLQHP- 97 (164)
T ss_pred cccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHhCC-
Confidence 677787766677778999999999999999999999999999999999998 567888888888887543
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHh-hhccceeecccccc------cceeeeeehh
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESL-KLFDSICNNKWFTD------TSIILFLNKK 237 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f-~~~~~~~~~tsA~d------~~~I~~~f~~ 237 (262)
.++|++|++||+|+..++.. ..+... .+ ...+ .++.+.+++|||++ ++||+++|+.
T Consensus 98 -~~~piilv~NK~Dl~~~~~~-~~i~~~----~~---------~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~ 160 (164)
T cd04162 98 -PDLPLVVLANKQDLPAARSV-QEIHKE----LE---------LEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQ 160 (164)
T ss_pred -CCCcEEEEEeCcCCcCCCCH-HHHHHH----hC---------ChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHH
Confidence 57999999999998654311 010000 00 0111 12457777888887 9999999964
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-18 Score=141.32 Aligned_cols=119 Identities=13% Similarity=0.145 Sum_probs=84.3
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHH-HHHHHHHHhCCCCCCCeEEEEeeC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQES-LKLFDSICNNKWFTDTSIILFLNK 178 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~-~~~~~~i~~~~~~~~~piil~~NK 178 (262)
+.+++++|||+|+++++.++..||++++++|+|+|+++ ..+++.. ..|+..+.+.. .++|++|||||
T Consensus 47 ~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~----------~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK 114 (176)
T cd04133 47 NTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLIS----------RASYENVLKKWVPELRHYA--PNVPIVLVGTK 114 (176)
T ss_pred EEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCC----------HHHHHHHHHHHHHHHHHhC--CCCCEEEEEeC
Confidence 34889999999999999999999999999999999998 7888887 46777765432 47999999999
Q ss_pred CchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeehh
Q psy6623 179 KDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 179 ~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~~ 237 (262)
+||.+++.... .. .+......+...+......+ .+++|||++|.||+++|+.
T Consensus 115 ~Dl~~~~~~~~--~~-----~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~ 167 (176)
T cd04133 115 LDLRDDKQYLA--DH-----PGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDA 167 (176)
T ss_pred hhhccChhhhh--hc-----cCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHH
Confidence 99965431100 00 00000001111111122344 4789999999999999974
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >KOG0081|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.3e-20 Score=142.57 Aligned_cols=136 Identities=12% Similarity=0.164 Sum_probs=107.2
Q ss_pred cccCCCCCCcCccccceeeecccceeEEEEee--e-----------ccceeeeecCCccccchhhhccccCCCEEEEeee
Q psy6623 68 DRLGAKEYQPTEQDILRTRVKTTGIVEVHFSF--K-----------NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVA 134 (262)
Q Consensus 68 ~ri~~~~y~pt~~Dil~~~~pT~Gi~~~~~~~--~-----------~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~d 134 (262)
-|+....|.+ ..+.|+||......+ + .+.+++|||+||++||++...+|+++-|.|+++|
T Consensus 27 y~YTD~~F~~-------qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFD 99 (219)
T KOG0081|consen 27 YQYTDGKFNT-------QFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFD 99 (219)
T ss_pred EEecCCcccc-------eeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHhhccceEEEe
Confidence 4455555554 448899987654443 1 2779999999999999999999999999999999
Q ss_pred ccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhh
Q psy6623 135 MSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLK 214 (262)
Q Consensus 135 ls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~ 214 (262)
+++ ..++-+...|+..+..+....+.-|+|++||+||.+.+...... ..-+..
T Consensus 100 lT~----------eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~q--------------a~~La~--- 152 (219)
T KOG0081|consen 100 LTS----------EQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQ--------------AAALAD--- 152 (219)
T ss_pred ccc----------hHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHH--------------HHHHHH---
Confidence 998 78999999999999888777889999999999999876544321 111111
Q ss_pred hccceeecccccccceeeeeehh
Q psy6623 215 LFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 215 ~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
...+.+++|||-+|.||+...+.
T Consensus 153 kyglPYfETSA~tg~Nv~kave~ 175 (219)
T KOG0081|consen 153 KYGLPYFETSACTGTNVEKAVEL 175 (219)
T ss_pred HhCCCeeeeccccCcCHHHHHHH
Confidence 14588999999999999988864
|
|
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-18 Score=140.89 Aligned_cols=120 Identities=11% Similarity=0.105 Sum_probs=82.8
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHH-HHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLK-LFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~-~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+++++||++|++.++.+|..||++++++|+|+|+++ ..++.+... |+..+... ..++|++|++||+
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~----------~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~ 115 (175)
T cd01874 48 PYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS----------PSSFENVKEKWVPEITHH--CPKTPFLLVGTQI 115 (175)
T ss_pred EEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEECH
Confidence 3788999999999999999999999999999999998 677777764 55555432 2479999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+..+......+.. ... .....+...+.... +.+.+++|||++|+||+++|+.
T Consensus 116 Dl~~~~~~~~~l~~----~~~-~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~ 169 (175)
T cd01874 116 DLRDDPSTIEKLAK----NKQ-KPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDE 169 (175)
T ss_pred hhhhChhhHHHhhh----ccC-CCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHH
Confidence 98653211111111 000 00001111111112 2367899999999999999975
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.5e-18 Score=139.49 Aligned_cols=109 Identities=16% Similarity=0.129 Sum_probs=83.1
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+++||++|++.++.+|..||++++++|+|+|+++ ..++.....|+..+.+.....++|++|++||+|
T Consensus 49 ~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~----------~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~D 118 (172)
T cd04141 49 PALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTD----------RHSFQEASEFKKLITRVRLTEDIPLVLVGNKVD 118 (172)
T ss_pred EEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCc----------hhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChh
Confidence 3678999999999999999999999999999999998 777887776655554433335799999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+..++. +. .....+...+..+.+++|||++|.||+++|+
T Consensus 119 l~~~~~----v~-------------~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~ 157 (172)
T cd04141 119 LESQRQ----VT-------------TEEGRNLAREFNCPFFETSAALRHYIDDAFH 157 (172)
T ss_pred hhhcCc----cC-------------HHHHHHHHHHhCCEEEEEecCCCCCHHHHHH
Confidence 865321 11 0111111123567788999999999999996
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.4e-18 Score=137.52 Aligned_cols=123 Identities=11% Similarity=0.054 Sum_probs=90.6
Q ss_pred ecccceeEE--EEee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEV--HFSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~--~~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|.... .+.+ ..+++.+||++|+++++..|..++++++++|+|+|+++ ..+++....|+..+.
T Consensus 32 ~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~~~ 101 (166)
T cd04122 32 PHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR----------RSTYNHLSSWLTDAR 101 (166)
T ss_pred CcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 456664432 2333 34788999999999999999999999999999999998 677887777777765
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+.. ..+.|++|++||+|+..++... .+..........+.++++||++|+||.++|..
T Consensus 102 ~~~-~~~~~iiiv~nK~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~ 158 (166)
T cd04122 102 NLT-NPNTVIFLIGNKADLEAQRDVT-----------------YEEAKQFADENGLLFLECSAKTGENVEDAFLE 158 (166)
T ss_pred HhC-CCCCeEEEEEECcccccccCcC-----------------HHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 432 2468999999999996532110 11122222234577889999999999999963
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >KOG0083|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.6e-19 Score=136.34 Aligned_cols=124 Identities=15% Similarity=0.128 Sum_probs=97.3
Q ss_pred eecccceeEEEE--ee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHH
Q psy6623 86 RVKTTGIVEVHF--SF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSI 161 (262)
Q Consensus 86 ~~pT~Gi~~~~~--~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i 161 (262)
.+.|+||..... ++ ..+++++|||+||++||+....||++++++++++|+++ ..+++....|+.++
T Consensus 27 fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydian----------kasfdn~~~wlsei 96 (192)
T KOG0083|consen 27 FISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIAN----------KASFDNCQAWLSEI 96 (192)
T ss_pred eeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeeccc----------chhHHHHHHHHHHH
Confidence 467889876543 33 35889999999999999999999999999999999998 78888888888887
Q ss_pred HhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 162 CNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 162 ~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
-... -..+.+.|++||+|+..++..+.+-.+ +......+.+.+|||++|-||+..|-.
T Consensus 97 ~ey~-k~~v~l~llgnk~d~a~er~v~~ddg~-----------------kla~~y~ipfmetsaktg~nvd~af~~ 154 (192)
T KOG0083|consen 97 HEYA-KEAVALMLLGNKCDLAHERAVKRDDGE-----------------KLAEAYGIPFMETSAKTGFNVDLAFLA 154 (192)
T ss_pred HHHH-HhhHhHhhhccccccchhhccccchHH-----------------HHHHHHCCCceeccccccccHhHHHHH
Confidence 6532 245788999999999776655443221 111225578899999999999999964
|
|
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-18 Score=141.21 Aligned_cols=128 Identities=16% Similarity=0.257 Sum_probs=99.2
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|.+...+.++++++.+||++|++.++..|..+|++++++|||+|+++ .+++.++..++..++++..
T Consensus 44 ~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~----------~~~~~~~~~~l~~~~~~~~ 113 (174)
T cd04153 44 SPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTD----------RERLPLTKEELYKMLAHED 113 (174)
T ss_pred CCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHhchh
Confidence 478888777888888999999999999999999999999999999999998 6778888888888887666
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHH-HHhhhccceeecccccccceeeeeehhhHHH
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQ-ESLKLFDSICNNKWFTDTSIILFLNKKDLFE 241 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~-~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~ 241 (262)
..++|++|++||+|+... .....+.. .+. ....++.+.++++||++|+||+++| .||.
T Consensus 114 ~~~~p~viv~NK~Dl~~~-~~~~~i~~--------------~l~~~~~~~~~~~~~~~SA~~g~gi~e~~--~~l~ 172 (174)
T cd04153 114 LRKAVLLVLANKQDLKGA-MTPAEISE--------------SLGLTSIRDHTWHIQGCCALTGEGLPEGL--DWIA 172 (174)
T ss_pred hcCCCEEEEEECCCCCCC-CCHHHHHH--------------HhCcccccCCceEEEecccCCCCCHHHHH--HHHh
Confidence 678999999999998641 11111111 000 0111245678899999999999999 4554
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-18 Score=137.74 Aligned_cols=127 Identities=24% Similarity=0.249 Sum_probs=95.3
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+.||+|+....+..+++++++||++|++.++.+|..|+++++++|||+|+++ ..++..+..++..+.+.+
T Consensus 29 ~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~~~~~~~~~~~~~~~~~ 98 (162)
T cd04157 29 IVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD----------RLRLVVVKDELELLLNHP 98 (162)
T ss_pred ecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc----------HHHHHHHHHHHHHHHcCc
Confidence 3678887777777788999999999999999999999999999999999998 677777778888877654
Q ss_pred CC--CCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 166 WF--TDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 166 ~~--~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
.+ .++|++|++||+|+..+.. ...+...+ + ......+.+.+++|||++|+||+++|+
T Consensus 99 ~~~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~l----~---------~~~~~~~~~~~~~~Sa~~g~gv~~~~~ 157 (162)
T cd04157 99 DIKHRRVPILFFANKMDLPDALT-AVKITQLL----G---------LENIKDKPWHIFASNALTGEGLDEGVQ 157 (162)
T ss_pred ccccCCCCEEEEEeCccccCCCC-HHHHHHHh----C---------CccccCceEEEEEeeCCCCCchHHHHH
Confidence 43 4799999999999864210 00000000 0 000111345678999999999999995
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.1e-18 Score=139.96 Aligned_cols=122 Identities=13% Similarity=0.115 Sum_probs=82.9
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHH-HHHHHHHHhCCCCCCCeEEEEeeC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQES-LKLFDSICNNKWFTDTSIILFLNK 178 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~-~~~~~~i~~~~~~~~~piil~~NK 178 (262)
+.+++++|||+||+.++.++..||++++++|+|+|+++ ..++... ..|+..+... ..++|++|||||
T Consensus 51 ~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~----------~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK 118 (182)
T cd04172 51 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISR----------PETLDSVLKKWKGEIQEF--CPNTKMLLVGCK 118 (182)
T ss_pred EEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHH--CCCCCEEEEeEC
Confidence 35789999999999999999999999999999999998 7788876 4565555443 247999999999
Q ss_pred CchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhcc-ceeecccccccce-eeeeehhh
Q psy6623 179 KDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFD-SICNNKWFTDTSI-ILFLNKKD 238 (262)
Q Consensus 179 ~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~-~~~~~tsA~d~~~-I~~~f~~~ 238 (262)
+||....-....+.. .-...-. .+-..+...... +.+++|||++|+| |+++|...
T Consensus 119 ~DL~~~~~~~~~~~~---~~~~~v~--~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~ 175 (182)
T cd04172 119 SDLRTDLTTLVELSN---HRQTPVS--YDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 175 (182)
T ss_pred hhhhcChhhHHHHHh---cCCCCCC--HHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHH
Confidence 998542100000000 0000000 111112122244 3688999999998 99999753
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.7e-18 Score=138.52 Aligned_cols=127 Identities=17% Similarity=0.185 Sum_probs=87.9
Q ss_pred ecccceeE--EEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|... ..+.+++ +.+++||++|+++++.+|..|+++++++|+|+|+++ ..++.+...|+..+.
T Consensus 30 ~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~----------~~s~~~i~~~~~~~~ 99 (182)
T cd04128 30 IQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTR----------KSTLNSIKEWYRQAR 99 (182)
T ss_pred CCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 56666544 3344443 789999999999999999999999999999999998 678888878888776
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.... ...| +|++||+|+..+. ....... ..+..........+.+++|||++|.||+++|..
T Consensus 100 ~~~~-~~~p-ilVgnK~Dl~~~~-~~~~~~~-----------~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~ 160 (182)
T cd04128 100 GFNK-TAIP-ILVGTKYDLFADL-PPEEQEE-----------ITKQARKYAKAMKAPLIFCSTSHSINVQKIFKI 160 (182)
T ss_pred HhCC-CCCE-EEEEEchhccccc-cchhhhh-----------hHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 5422 3467 5789999986321 0000000 011111111123466789999999999999963
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.5e-18 Score=140.45 Aligned_cols=124 Identities=15% Similarity=0.066 Sum_probs=89.6
Q ss_pred ecccceeE--EEEeee---ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSFK---NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSI 161 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~~---~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i 161 (262)
.||+|... ..+.++ .+.+.+||++|+++++.+|..||++++++|+|+|+++ ..++.++..|+..+
T Consensus 30 ~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~----------~~s~~~~~~~~~~i 99 (201)
T cd04107 30 KATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTR----------PSTFEAVLKWKADL 99 (201)
T ss_pred CCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHH
Confidence 46666432 233333 4778999999999999999999999999999999998 77888887777666
Q ss_pred HhC---CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhcc-ceeecccccccceeeeeehh
Q psy6623 162 CNN---KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFD-SICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 162 ~~~---~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~-~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+. +...++|++|++||+|+..++... ..-+.+...... +.+++|||++|.||+++|..
T Consensus 100 ~~~~~~~~~~~~piilv~NK~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~ 162 (201)
T cd04107 100 DSKVTLPNGEPIPCLLLANKCDLKKRLAKD-----------------GEQMDQFCKENGFIGWFETSAKEGINIEEAMRF 162 (201)
T ss_pred HHhhcccCCCCCcEEEEEECCCcccccccC-----------------HHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHH
Confidence 432 223578999999999996421100 111222222233 56889999999999999964
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-17 Score=141.26 Aligned_cols=139 Identities=14% Similarity=0.077 Sum_probs=95.5
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|.......++.+.+.+||++|++.++.+|..||++++++|+|+|+++ ..++.+...+|..+... .
T Consensus 29 ~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~----------~~Sf~~l~~~~~~l~~~-~ 97 (220)
T cd04126 29 VSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSN----------VQSLEELEDRFLGLTDT-A 97 (220)
T ss_pred CCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-c
Confidence 467776655556677889999999999999999999999999999999998 77888888888887754 2
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCc---ccCCCC-CCCCc-ch-hHHHHHHhhh-----------ccceeecccccccc
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLT---ICFPEY-AGKRP-GE-RNRMQESLKL-----------FDSICNNKWFTDTS 229 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~---~~fp~~-~g~~~-~~-~~~i~~~f~~-----------~~~~~~~tsA~d~~ 229 (262)
..++|++||+||+||.........-. ..-+.. .-.-. .+ ..+..+ ... ..+.+++|||++|.
T Consensus 98 ~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~-~~~~~~~~~~~~~~~~~~~~E~SA~tg~ 176 (220)
T cd04126 98 NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKR-INKYKMLDEDLSPAAEKMCFETSAKTGY 176 (220)
T ss_pred CCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHH-hCccccccccccccccceEEEeeCCCCC
Confidence 35789999999999965211110000 000000 00000 01 222221 110 12568899999999
Q ss_pred eeeeeehh
Q psy6623 230 IILFLNKK 237 (262)
Q Consensus 230 ~I~~~f~~ 237 (262)
||+++|..
T Consensus 177 ~V~elf~~ 184 (220)
T cd04126 177 NVDELFEY 184 (220)
T ss_pred CHHHHHHH
Confidence 99999975
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=7e-18 Score=137.42 Aligned_cols=125 Identities=18% Similarity=0.306 Sum_probs=97.9
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|+....+.++++.+.+||++|++.++..|..||++++++|+|+|+++ ..++.+...++..++....
T Consensus 43 ~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~ 112 (173)
T cd04154 43 SPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSD----------RLRLDDCKRELKELLQEER 112 (173)
T ss_pred CCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHhChh
Confidence 578888777778888999999999999999999999999999999999998 6788888888888887555
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHH-Hhhhccceeecccccccceeeeeeh
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQE-SLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~-~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
..++|++|++||+|+..+. ....+ .+++.. ....+.+.++++||++|+||.++|+
T Consensus 113 ~~~~p~iiv~nK~Dl~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 168 (173)
T cd04154 113 LAGATLLILANKQDLPGAL-SEEEI--------------REALELDKISSHHWRIQPCSAVTGEGLLQGID 168 (173)
T ss_pred hcCCCEEEEEECcccccCC-CHHHH--------------HHHhCccccCCCceEEEeccCCCCcCHHHHHH
Confidence 5689999999999986521 00001 011100 0112457789999999999999995
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.3e-18 Score=143.86 Aligned_cols=125 Identities=13% Similarity=0.086 Sum_probs=92.7
Q ss_pred ecccceeEEEEee----eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEVHFSF----KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~~~~~----~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|+......+ +.+++++||++|++.++.+|..||++++++|+|+|+++ ..++.....|+..+.
T Consensus 43 ~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~----------~~s~~~i~~w~~~i~ 112 (219)
T PLN03071 43 EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLC 112 (219)
T ss_pred CCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCC----------HHHHHHHHHHHHHHH
Confidence 5677765544333 35899999999999999999999999999999999998 677777777777776
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 242 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~ 242 (262)
.. ..++|++|||||+|+....... . ...+. ..+.+.+++|||++|.||.++|. +|..
T Consensus 113 ~~--~~~~piilvgNK~Dl~~~~v~~----~-----------~~~~~----~~~~~~~~e~SAk~~~~i~~~f~--~l~~ 169 (219)
T PLN03071 113 RV--CENIPIVLCGNKVDVKNRQVKA----K-----------QVTFH----RKKNLQYYEISAKSNYNFEKPFL--YLAR 169 (219)
T ss_pred Hh--CCCCcEEEEEEchhhhhccCCH----H-----------HHHHH----HhcCCEEEEcCCCCCCCHHHHHH--HHHH
Confidence 43 3579999999999985421100 0 01121 12456788999999999999995 4444
Q ss_pred hc
Q psy6623 243 KI 244 (262)
Q Consensus 243 ~i 244 (262)
++
T Consensus 170 ~~ 171 (219)
T PLN03071 170 KL 171 (219)
T ss_pred HH
Confidence 44
|
|
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-17 Score=134.73 Aligned_cols=115 Identities=12% Similarity=0.107 Sum_probs=88.2
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+++||++|++.++.+|..|+++++++|+|+|+++ ..++.+..+|+..+.+.....+.|++|++||+|
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 117 (164)
T cd04175 48 QCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITA----------QSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 117 (164)
T ss_pred EEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCc
Confidence 4678899999999999999999999999999999998 677888888888887655557899999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
+..++.... .+...+.+ ...+.+.+|||++|.||+++|. ++.+.+
T Consensus 118 l~~~~~~~~--------------~~~~~~~~---~~~~~~~~~Sa~~~~~v~~~~~--~l~~~l 162 (164)
T cd04175 118 LEDERVVGK--------------EQGQNLAR---QWGCAFLETSAKAKINVNEIFY--DLVRQI 162 (164)
T ss_pred chhccEEcH--------------HHHHHHHH---HhCCEEEEeeCCCCCCHHHHHH--HHHHHh
Confidence 965321110 00111111 1346788999999999999995 455443
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-17 Score=135.84 Aligned_cols=110 Identities=12% Similarity=0.187 Sum_probs=85.1
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+++||++||+.++..|..++++++++|+|+|+++ ..++.+...|+..+.......+.|++|++||+|
T Consensus 62 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D 131 (180)
T cd04127 62 RIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTN----------EQSFLNVRNWMSQLQTHAYCENPDIVLCGNKAD 131 (180)
T ss_pred EEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCcc
Confidence 3678999999999999999999999999999999998 678888888888776554445789999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+..++... .+..........+.++++||++|.||+++|+.
T Consensus 132 l~~~~~v~-----------------~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~ 171 (180)
T cd04127 132 LEDQRQVS-----------------EEQAKALADKYGIPYFETSAATGTNVEKAVER 171 (180)
T ss_pred chhcCccC-----------------HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 96532111 01111111123466889999999999999963
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.1e-18 Score=139.13 Aligned_cols=136 Identities=16% Similarity=0.219 Sum_probs=101.7
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||.|.....+.++++++.+||++|++.++.+|..|+++++++|||+|+++ ..++.++..++..+++...
T Consensus 46 ~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~----------~~~~~~~~~~l~~l~~~~~ 115 (184)
T smart00178 46 QPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYD----------KERFAESKRELDALLSDEE 115 (184)
T ss_pred CCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCc----------HHHHHHHHHHHHHHHcChh
Confidence 456666666777788999999999999999999999999999999999998 6788888889998887666
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCC--CCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhh
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFP--EYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEK 243 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp--~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~ 243 (262)
..++|++|++||+|+..+ +...++...+- +..+.. ..-..+.+.++.|||++|+|+++++ +||.++
T Consensus 116 ~~~~piliv~NK~Dl~~~-~~~~~i~~~l~l~~~~~~~--------~~~~~~~~~i~~~Sa~~~~g~~~~~--~wl~~~ 183 (184)
T smart00178 116 LATVPFLILGNKIDAPYA-ASEDELRYALGLTNTTGSK--------GKVGVRPLEVFMCSVVRRMGYGEGF--KWLSQY 183 (184)
T ss_pred hcCCCEEEEEeCccccCC-CCHHHHHHHcCCCcccccc--------cccCCceeEEEEeecccCCChHHHH--HHHHhh
Confidence 678999999999998642 22222222110 000000 0001156789999999999999999 677654
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-17 Score=134.05 Aligned_cols=126 Identities=20% Similarity=0.296 Sum_probs=94.0
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|++...+..+++++++||++|++.++..|..|+++++++|+|+|+++ ..++.....++..+++...
T Consensus 28 ~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~ 97 (158)
T cd04151 28 IPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTD----------RDRLGTAKEELHAMLEEEE 97 (158)
T ss_pred CCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHhchh
Confidence 477887777777788999999999999999999999999999999999998 5566666777777766555
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
..+.|++|++||+|+.+.. ....+...+ + ...+..+.+.++++||++|.||+++|+
T Consensus 98 ~~~~piiiv~nK~Dl~~~~-~~~~i~~~~----~---------~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 98 LKGAVLLVFANKQDMPGAL-SEAEISEKL----G---------LSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred hcCCcEEEEEeCCCCCCCC-CHHHHHHHh----C---------ccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 5679999999999986421 000010000 0 001112345688999999999999995
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-17 Score=132.23 Aligned_cols=109 Identities=11% Similarity=0.095 Sum_probs=83.2
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+++||++|+++++.+|..|+++++++|+|+|+++ ..++.+...|++.+.+.....++|++|++||+|
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 117 (163)
T cd04136 48 QCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITS----------QSSFNDLQDLREQILRVKDTENVPMVLVGNKCD 117 (163)
T ss_pred EEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 4678899999999999999999999999999999998 677888888887777654446799999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+..++... . .+..-+.+ ...+.++++||++|.||.++|.
T Consensus 118 l~~~~~~~----~----------~~~~~~~~---~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04136 118 LEDERVVS----R----------EEGQALAR---QWGCPFYETSAKSKINVDEVFA 156 (163)
T ss_pred ccccceec----H----------HHHHHHHH---HcCCeEEEecCCCCCCHHHHHH
Confidence 86422100 0 00111111 1236678999999999999995
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.4e-17 Score=131.61 Aligned_cols=114 Identities=14% Similarity=0.110 Sum_probs=85.3
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+++||++|+++++.+|..|+++++++|+|+|+++ ..++.+...|+..+.+.....+.|++|++||+|
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~D 117 (163)
T cd04176 48 PSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVN----------QQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVD 117 (163)
T ss_pred EEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 3578899999999999999999999999999999998 677888888877777654446899999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEK 243 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~ 243 (262)
+..++. .. ............+.+++|||++|.||.++|. ++...
T Consensus 118 l~~~~~----~~-------------~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~--~l~~~ 161 (163)
T cd04176 118 LESERE----VS-------------SAEGRALAEEWGCPFMETSAKSKTMVNELFA--EIVRQ 161 (163)
T ss_pred chhcCc----cC-------------HHHHHHHHHHhCCEEEEecCCCCCCHHHHHH--HHHHh
Confidence 854221 00 0011111111235678999999999999995 44443
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-17 Score=133.72 Aligned_cols=126 Identities=13% Similarity=0.083 Sum_probs=93.3
Q ss_pred ecccceeEEEEee----eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEVHFSF----KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~~~~~----~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|+......+ +.+.+.+||++|++.+..++..++++++++|+|+|+++ .+++.....|+..+.
T Consensus 30 ~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~ 99 (166)
T cd00877 30 VATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTS----------RVTYKNVPNWHRDLV 99 (166)
T ss_pred CCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 5666765544443 45789999999999999999999999999999999998 677777777777776
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 242 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~ 242 (262)
+.. .++|++|++||+|+..+.... . ...+. ..+.+.+++|||++|+||+++|+ +|.+
T Consensus 100 ~~~--~~~piiiv~nK~Dl~~~~~~~----~-----------~~~~~----~~~~~~~~e~Sa~~~~~v~~~f~--~l~~ 156 (166)
T cd00877 100 RVC--GNIPIVLCGNKVDIKDRKVKA----K-----------QITFH----RKKNLQYYEISAKSNYNFEKPFL--WLAR 156 (166)
T ss_pred HhC--CCCcEEEEEEchhcccccCCH----H-----------HHHHH----HHcCCEEEEEeCCCCCChHHHHH--HHHH
Confidence 543 389999999999986321100 0 01111 12557789999999999999995 4555
Q ss_pred hcc
Q psy6623 243 KIK 245 (262)
Q Consensus 243 ~i~ 245 (262)
.+.
T Consensus 157 ~~~ 159 (166)
T cd00877 157 KLL 159 (166)
T ss_pred HHH
Confidence 443
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-17 Score=136.16 Aligned_cols=126 Identities=21% Similarity=0.239 Sum_probs=91.4
Q ss_pred ecccceeEEEEee-----eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHH
Q psy6623 87 VKTTGIVEVHFSF-----KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSI 161 (262)
Q Consensus 87 ~pT~Gi~~~~~~~-----~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i 161 (262)
.||+|+....+.+ +++.+.+|||+|+++++.+|..|+++++++|+|+|+++ ..++.++..++..+
T Consensus 32 ~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~~~~~~~~~~~~i 101 (183)
T cd04152 32 VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVD----------VERMEEAKTELHKI 101 (183)
T ss_pred CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHH
Confidence 4677766554444 35789999999999999999999999999999999998 56777777777777
Q ss_pred HhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHH-HHh-hhccceeecccccccceeeeeehh
Q psy6623 162 CNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQ-ESL-KLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 162 ~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~-~~f-~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.......+.|++|++||+|+... .....+. .++. ... ..+.+.++++||++|+||+++|+.
T Consensus 102 ~~~~~~~~~p~iiv~NK~D~~~~-~~~~~~~--------------~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~ 164 (183)
T cd04152 102 TRFSENQGVPVLVLANKQDLPNA-LSVSEVE--------------KLLALHELSASTPWHVQPACAIIGEGLQEGLEK 164 (183)
T ss_pred HhhhhcCCCcEEEEEECcCcccc-CCHHHHH--------------HHhCccccCCCCceEEEEeecccCCCHHHHHHH
Confidence 75544457999999999998641 1110000 0000 000 012356889999999999999974
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=9e-18 Score=135.37 Aligned_cols=134 Identities=14% Similarity=0.143 Sum_probs=96.5
Q ss_pred cccCCCCCCcCccccceeeecccceeE--EEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccc
Q psy6623 68 DRLGAKEYQPTEQDILRTRVKTTGIVE--VHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLH 143 (262)
Q Consensus 68 ~ri~~~~y~pt~~Dil~~~~pT~Gi~~--~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~ 143 (262)
.|+....|.++. .||+|... ..+.+++ +.+++||++|++.++.+|..|+++++++++|+|+++
T Consensus 18 ~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~------ 84 (161)
T cd04117 18 CRFTDNEFHSSH-------ISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISS------ 84 (161)
T ss_pred HHHhcCCCCCCC-------CCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCC------
Confidence 344555565533 56777543 3444443 678999999999999999999999999999999998
Q ss_pred cCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecc
Q psy6623 144 EDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNK 223 (262)
Q Consensus 144 e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~t 223 (262)
.+++++...|++.+.+. ...+.|+++++||.|+..++.... .+...+.+ ...+.+++|
T Consensus 85 ----~~sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~--------------~~~~~~~~---~~~~~~~e~ 142 (161)
T cd04117 85 ----ERSYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKRQVGD--------------EQGNKLAK---EYGMDFFET 142 (161)
T ss_pred ----HHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCCCH--------------HHHHHHHH---HcCCEEEEE
Confidence 78888888888777643 235799999999999865321110 01112221 123557899
Q ss_pred cccccceeeeeeh
Q psy6623 224 WFTDTSIILFLNK 236 (262)
Q Consensus 224 sA~d~~~I~~~f~ 236 (262)
||++|.||+++|.
T Consensus 143 Sa~~~~~v~~~f~ 155 (161)
T cd04117 143 SACTNSNIKESFT 155 (161)
T ss_pred eCCCCCCHHHHHH
Confidence 9999999999995
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >KOG0394|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-18 Score=138.62 Aligned_cols=130 Identities=8% Similarity=0.021 Sum_probs=92.2
Q ss_pred eeecccceeEEEEe--e--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHH
Q psy6623 85 TRVKTTGIVEVHFS--F--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDS 160 (262)
Q Consensus 85 ~~~pT~Gi~~~~~~--~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~ 160 (262)
.+..|||....+.+ + +-+.++|||||||++|+++.-.+||++|++++|+|+.+- .+...+..|.+.|-.
T Consensus 37 qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~-------~Sfe~L~~Wr~EFl~ 109 (210)
T KOG0394|consen 37 QYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNP-------KSFENLENWRKEFLI 109 (210)
T ss_pred HhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCCh-------hhhccHHHHHHHHHH
Confidence 34678886544333 3 348899999999999999999999999999999999982 223555555555544
Q ss_pred HHhCCCCCCCeEEEEeeCCchhhhh--hccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 161 ICNNKWFTDTSIILFLNKKDLFEEK--IKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 161 i~~~~~~~~~piil~~NK~Dl~~~k--l~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
-.+-.....-|+||+|||.|+.+.+ ....... ..|-.. .+.+.+++||||+..||..+|..
T Consensus 110 qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~A-------------q~WC~s---~gnipyfEtSAK~~~NV~~AFe~ 172 (210)
T KOG0394|consen 110 QASPQDPETFPFVILGNKIDVDGGKSRQVSEKKA-------------QTWCKS---KGNIPYFETSAKEATNVDEAFEE 172 (210)
T ss_pred hcCCCCCCcccEEEEcccccCCCCccceeeHHHH-------------HHHHHh---cCCceeEEecccccccHHHHHHH
Confidence 4443344577999999999997622 1111111 112211 15688999999999999999985
|
|
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.8e-17 Score=131.96 Aligned_cols=123 Identities=15% Similarity=0.155 Sum_probs=89.0
Q ss_pred ecccceeEE--EEee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEV--HFSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~--~~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|+... .+.. +.+.+++||++|++.++..|..++++++++++|+|+++ .+++.+...|++.+.
T Consensus 31 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~----------~~s~~~~~~~~~~i~ 100 (165)
T cd01865 31 VSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN----------EESFNAVQDWSTQIK 100 (165)
T ss_pred CCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 566664332 2332 34789999999999999999999999999999999998 677887777777765
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.. ...++|++|++||+|+..++... .....+......+.++++||++|.||.++|+.
T Consensus 101 ~~-~~~~~piivv~nK~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 157 (165)
T cd01865 101 TY-SWDNAQVILVGNKCDMEDERVVS-----------------SERGRQLADQLGFEFFEASAKENINVKQVFER 157 (165)
T ss_pred Hh-CCCCCCEEEEEECcccCcccccC-----------------HHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 43 23478999999999996532110 01111111123466889999999999999963
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.9e-18 Score=144.51 Aligned_cols=121 Identities=16% Similarity=0.170 Sum_probs=81.7
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHH-HHHHHHHHhCCCCCCCeEEEEeeC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQES-LKLFDSICNNKWFTDTSIILFLNK 178 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~-~~~~~~i~~~~~~~~~piil~~NK 178 (262)
+.+.++||||+||+.++.++..||++++++|+|+|+++ .+++... ..|+..+... ..++|++|||||
T Consensus 59 ~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~----------~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK 126 (232)
T cd04174 59 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISR----------PETVDSALKKWKAEIMDY--CPSTRILLIGCK 126 (232)
T ss_pred EEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCC----------hHHHHHHHHHHHHHHHHh--CCCCCEEEEEEC
Confidence 45789999999999999999999999999999999998 7788775 4555555532 246899999999
Q ss_pred CchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccc-eeeeeehh
Q psy6623 179 KDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTS-IILFLNKK 237 (262)
Q Consensus 179 ~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~-~I~~~f~~ 237 (262)
+||..+.-....+... -...-. .+-..+......+ .+++|||++|+ ||+++|..
T Consensus 127 ~DL~~~~~~~~~l~~~---~~~~Vs--~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~ 182 (232)
T cd04174 127 TDLRTDLSTLMELSNQ---KQAPIS--YEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRS 182 (232)
T ss_pred cccccccchhhhhccc---cCCcCC--HHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHH
Confidence 9985421000000000 000000 1111111222445 47899999998 89999985
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.6e-18 Score=137.81 Aligned_cols=120 Identities=15% Similarity=0.145 Sum_probs=81.7
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHH-HHHHHHHHhCCCCCCCeEEEEeeC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQES-LKLFDSICNNKWFTDTSIILFLNK 178 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~-~~~~~~i~~~~~~~~~piil~~NK 178 (262)
+.+++++|||+||+.++.++..||++++++|+|+|+++ ..++... ..|+..+... ..++|++|||||
T Consensus 47 ~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~----------~~Sf~~~~~~w~~~i~~~--~~~~~iilVgnK 114 (178)
T cd04131 47 QRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISR----------PETLDSVLKKWRGEIQEF--CPNTKVLLVGCK 114 (178)
T ss_pred EEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCC----------hhhHHHHHHHHHHHHHHH--CCCCCEEEEEEC
Confidence 34789999999999999999999999999999999998 7888876 4566555543 247899999999
Q ss_pred CchhhhhhccCCCcccCCCCCC-CCcchhHHHHHHhhhccc-eeecccccccce-eeeeehh
Q psy6623 179 KDLFEEKIKKSPLTICFPEYAG-KRPGERNRMQESLKLFDS-ICNNKWFTDTSI-ILFLNKK 237 (262)
Q Consensus 179 ~Dl~~~kl~~~~l~~~fp~~~g-~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~-I~~~f~~ 237 (262)
+||..+.-....+.. ... +-. .+-..+......+ .+++|||++|+| |+++|..
T Consensus 115 ~DL~~~~~~~~~~~~----~~~~~v~--~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~ 170 (178)
T cd04131 115 TDLRTDLSTLMELSH----QRQAPVS--YEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHV 170 (178)
T ss_pred hhhhcChhHHHHHHh----cCCCCCC--HHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHH
Confidence 999542100000000 000 000 1111111122444 578999999995 9999975
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.4e-17 Score=133.96 Aligned_cols=141 Identities=20% Similarity=0.269 Sum_probs=99.9
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|.....+.+++..+.+||++|++.++..|..|+++++++|+|+|+++ ..++.++..++..+++...
T Consensus 48 ~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~----------~~s~~~~~~~~~~i~~~~~ 117 (190)
T cd00879 48 VPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAAD----------PERFQESKEELDSLLSDEE 117 (190)
T ss_pred CCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCc----------HHHHHHHHHHHHHHHcCcc
Confidence 467777777788888999999999999999999999999999999999998 6778888889999887655
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHh-hhccceeecccccccceeeeeehhhHHHhh
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESL-KLFDSICNNKWFTDTSIILFLNKKDLFEEK 243 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f-~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~ 243 (262)
..+.|++|++||+|+... +....+.+.+-.+.-.. .+.+...- ..+.+.++.|||++|+||.++| .||.+.
T Consensus 118 ~~~~pvivv~NK~Dl~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~--~~l~~~ 189 (190)
T cd00879 118 LANVPFLILGNKIDLPGA-VSEEELRQALGLYGTTT---GKGVSLKVSGIRPIEVFMCSVVKRQGYGEAF--RWLSQY 189 (190)
T ss_pred ccCCCEEEEEeCCCCCCC-cCHHHHHHHhCcccccc---cccccccccCceeEEEEEeEecCCCChHHHH--HHHHhh
Confidence 678999999999998531 11111111110000000 00000000 0134668899999999999999 566543
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.1e-17 Score=134.47 Aligned_cols=111 Identities=15% Similarity=0.077 Sum_probs=84.2
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
+.+.+++|||+|++.++.+|..|+++++++|+|+|+++ ..++.+...|+..+.+.....++|++|++||+
T Consensus 51 ~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~----------~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~ 120 (189)
T PTZ00369 51 ETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITS----------RSSFEEIASFREQILRVKDKDRVPMILVGNKC 120 (189)
T ss_pred EEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 44678999999999999999999999999999999998 67777777777777654444588999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+..++ ++. ............+.+++|||++|.||.++|..
T Consensus 121 Dl~~~~----~i~-------------~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~ 161 (189)
T PTZ00369 121 DLDSER----QVS-------------TGEGQELAKSFGIPFLETSAKQRVNVDEAFYE 161 (189)
T ss_pred cccccc----ccC-------------HHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence 985421 110 00111111113456789999999999999963
|
|
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.9e-17 Score=136.89 Aligned_cols=124 Identities=15% Similarity=0.126 Sum_probs=87.6
Q ss_pred ecccceeE--EEEeee---ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSFK---NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSI 161 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~~---~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i 161 (262)
.||+|+.. ..+.+. .+.+++||++|++.++.+|..|+++++++|+|+|+++ .+++.....|+..+
T Consensus 30 ~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~----------~~s~~~~~~w~~~l 99 (215)
T cd04109 30 KQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTN----------SQSFENLEDWYSMV 99 (215)
T ss_pred CCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHH
Confidence 56666543 333432 4789999999999999999999999999999999998 66777766666666
Q ss_pred HhCCC--CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 162 CNNKW--FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 162 ~~~~~--~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+... ..++|++|++||+|+..++-...... ..+.. ...+.++++||++|+||.++|+.
T Consensus 100 ~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~-------------~~~~~----~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 100 RKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKH-------------ARFAQ----ANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred HHhccccCCCceEEEEEECcccccccccCHHHH-------------HHHHH----HcCCEEEEEECCCCCCHHHHHHH
Confidence 54321 24578999999999964221100000 11211 13466788999999999999964
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.6e-17 Score=131.91 Aligned_cols=132 Identities=20% Similarity=0.310 Sum_probs=100.5
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+.||+|.....+.+++..+.+||++|++.++.+|..++++++++|+|+|.++ ..++.+...++..+.+..
T Consensus 34 ~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~----------~~~~~~~~~~~~~~~~~~ 103 (167)
T cd04160 34 ITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTD----------RERFEESKSALEKVLRNE 103 (167)
T ss_pred cCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECch----------HHHHHHHHHHHHHHHhCh
Confidence 4688898888888889999999999999999999999999999999999987 567888888888888766
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHH
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFE 241 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~ 241 (262)
...++|++|++||+|+... .....+...+.++. .......+.++.+||++|+||+++| .||.
T Consensus 104 ~~~~~p~ilv~NK~D~~~~-~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~Sa~~g~gv~e~~--~~l~ 165 (167)
T cd04160 104 ALEGVPLLILANKQDLPDA-LSVEEIKEVFQDKA-----------EEIGRRDCLVLPVSALEGTGVREGI--EWLV 165 (167)
T ss_pred hhcCCCEEEEEEccccccC-CCHHHHHHHhcccc-----------ccccCCceEEEEeeCCCCcCHHHHH--HHHh
Confidence 6678999999999998642 11111111111110 0011144678999999999999998 4553
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.1e-17 Score=129.63 Aligned_cols=126 Identities=22% Similarity=0.312 Sum_probs=94.0
Q ss_pred ecccceeEEEEee-eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 87 VKTTGIVEVHFSF-KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 87 ~pT~Gi~~~~~~~-~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
.||+|+....+.. +++.+.+||++|++.++..|..++++++++|+|+|+++ ..++.++..++..++...
T Consensus 28 ~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~----------~~~~~~~~~~~~~~~~~~ 97 (160)
T cd04156 28 IPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSD----------EARLDESQKELKHILKNE 97 (160)
T ss_pred cCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCc----------HHHHHHHHHHHHHHHhch
Confidence 5777766655555 35789999999999999999999999999999999998 678888888999988766
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhh-hccceeecccccccceeeeeeh
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLK-LFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~-~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
...++|++|++||+|+... ....++...+. ...+. .+.+.+++|||++|+||.++|+
T Consensus 98 ~~~~~piilv~nK~Dl~~~-~~~~~i~~~~~-------------~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 155 (160)
T cd04156 98 HIKGVPVVLLANKQDLPGA-LTAEEITRRFK-------------LKKYCSDRDWYVQPCSAVTGEGLAEAFR 155 (160)
T ss_pred hhcCCCEEEEEECcccccC-cCHHHHHHHcC-------------CcccCCCCcEEEEecccccCCChHHHHH
Confidence 6678999999999998531 11001110000 00111 1345678899999999999996
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.1e-17 Score=131.69 Aligned_cols=121 Identities=14% Similarity=0.089 Sum_probs=81.9
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHH-HHHHHHhCCCCCCCeEEEEeeC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLK-LFDSICNNKWFTDTSIILFLNK 178 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~-~~~~i~~~~~~~~~piil~~NK 178 (262)
+.+++.+|||+|++.++.+|..|+++++++|+|+|+++ .+++.+... |+..+... ..++|++|++||
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~sf~~~~~~~~~~~~~~--~~~~piilvgnK 114 (174)
T cd01871 47 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVS----------PASFENVRAKWYPEVRHH--CPNTPIILVGTK 114 (174)
T ss_pred EEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEeeC
Confidence 34788999999999999999999999999999999998 677877754 55544432 247999999999
Q ss_pred CchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehh
Q psy6623 179 KDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 179 ~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+|+...+.....+..... ..-. ..-..+.... +.+.+++|||++|+||.++|..
T Consensus 115 ~Dl~~~~~~~~~~~~~~~---~~v~--~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~ 169 (174)
T cd01871 115 LDLRDDKDTIEKLKEKKL---TPIT--YPQGLAMAKEIGAVKYLECSALTQKGLKTVFDE 169 (174)
T ss_pred hhhccChhhHHHHhhccC---CCCC--HHHHHHHHHHcCCcEEEEecccccCCHHHHHHH
Confidence 999643221111111000 0000 1111111111 2246789999999999999963
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.8e-17 Score=129.25 Aligned_cols=115 Identities=12% Similarity=0.128 Sum_probs=83.4
Q ss_pred EEEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCe
Q psy6623 94 EVHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTS 171 (262)
Q Consensus 94 ~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~p 171 (262)
...+.+++ +.+.+||++||+. ..|+++++++|+|+|+++ .++++++..|+..+.......++|
T Consensus 37 ~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~----------~~sf~~~~~~~~~i~~~~~~~~~p 101 (158)
T cd04103 37 KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSLEN----------EASFQTVYNLYHQLSSYRNISEIP 101 (158)
T ss_pred EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCC
Confidence 34455544 6799999999975 357899999999999999 899999989999888765556799
Q ss_pred EEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 172 IILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 172 iil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
++|++||.|+.... ..++.. ..| .++..+ .+.+.+++|||++|.||+++|..
T Consensus 102 iilvgnK~Dl~~~~--~~~v~~----~~~-----~~~~~~---~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 102 LILVGTQDAISESN--PRVIDD----ARA-----RQLCAD---MKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred EEEEeeHHHhhhcC--CcccCH----HHH-----HHHHHH---hCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999985311 111111 000 112111 13578899999999999999963
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >KOG0088|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-17 Score=130.72 Aligned_cols=110 Identities=12% Similarity=0.087 Sum_probs=85.9
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
....+.||||+||++|..+-+.||++++|+|+|+|++| ..+++..+.|..++.... -..+.++||+||+
T Consensus 60 ~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITD----------rdSFqKVKnWV~Elr~ml-Gnei~l~IVGNKi 128 (218)
T KOG0088|consen 60 CRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITD----------RDSFQKVKNWVLELRTML-GNEIELLIVGNKI 128 (218)
T ss_pred ceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccc----------hHHHHHHHHHHHHHHHHh-CCeeEEEEecCcc
Confidence 34679999999999999999999999999999999999 788888888877776432 2357899999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
||.+++-...+... .|.+. -.-.+..|||++..+|.++|..
T Consensus 129 DLEeeR~Vt~qeAe-------------~YAes----vGA~y~eTSAk~N~Gi~elFe~ 169 (218)
T KOG0088|consen 129 DLEEERQVTRQEAE-------------AYAES----VGALYMETSAKDNVGISELFES 169 (218)
T ss_pred cHHHhhhhhHHHHH-------------HHHHh----hchhheecccccccCHHHHHHH
Confidence 99887654433222 22222 1233567999999999999974
|
|
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-16 Score=134.67 Aligned_cols=124 Identities=10% Similarity=0.104 Sum_probs=91.6
Q ss_pred ecccceeEEE--Eeee---ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHH
Q psy6623 87 VKTTGIVEVH--FSFK---NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSI 161 (262)
Q Consensus 87 ~pT~Gi~~~~--~~~~---~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i 161 (262)
.||+|..... +.+. .+++++||++|+++++.+|..|+++++++|+|+|+++ .+++.+...|+..+
T Consensus 32 ~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~----------~~Sf~~l~~~~~~i 101 (211)
T cd04111 32 DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITN----------RESFEHVHDWLEEA 101 (211)
T ss_pred CceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCC----------HHHHHHHHHHHHHH
Confidence 4666654432 3332 3678999999999999999999999999999999998 78888888888888
Q ss_pred HhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 162 CNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 162 ~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
........+|++|++||+|+..++.... .+...+.+ ...+.+++|||++|.||.++|+.
T Consensus 102 ~~~~~~~~~~iilvgNK~Dl~~~~~v~~--------------~~~~~~~~---~~~~~~~e~Sak~g~~v~e~f~~ 160 (211)
T cd04111 102 RSHIQPHRPVFILVGHKCDLESQRQVTR--------------EEAEKLAK---DLGMKYIETSARTGDNVEEAFEL 160 (211)
T ss_pred HHhcCCCCCeEEEEEEccccccccccCH--------------HHHHHHHH---HhCCEEEEEeCCCCCCHHHHHHH
Confidence 7654445688999999999865221100 00111111 24477899999999999999964
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-16 Score=132.70 Aligned_cols=110 Identities=11% Similarity=0.051 Sum_probs=81.3
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC--CCCCCeEEEEeeC
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK--WFTDTSIILFLNK 178 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~--~~~~~piil~~NK 178 (262)
.+.+++||++|+++++.+|..||++++++|+|+|+++ .+++.....|+..+.+.. ...++|++|++||
T Consensus 46 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK 115 (190)
T cd04144 46 PCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITS----------RSTFERVERFREQIQRVKDESAADVPIMIVGNK 115 (190)
T ss_pred EEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEC
Confidence 3678999999999999999999999999999999998 666666666666665432 1357899999999
Q ss_pred CchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 179 KDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 179 ~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+|+..++. +. ..-.........+.++++||++|.||.++|..
T Consensus 116 ~Dl~~~~~----v~-------------~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~ 157 (190)
T cd04144 116 CDKVYERE----VS-------------TEEGAALARRLGCEFIEASAKTNVNVERAFYT 157 (190)
T ss_pred hhccccCc----cC-------------HHHHHHHHHHhCCEEEEecCCCCCCHHHHHHH
Confidence 99864221 10 00111111123467889999999999999964
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-16 Score=135.57 Aligned_cols=123 Identities=11% Similarity=0.115 Sum_probs=83.9
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
..+.+.+|||+||+.++.+|..+|++++++|+|+|+++ ..++......|...+.. ...++|++|||||+
T Consensus 47 ~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~----------~~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~ 115 (222)
T cd04173 47 RRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISR----------PETLDSVLKKWQGETQE-FCPNAKVVLVGCKL 115 (222)
T ss_pred EEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-hCCCCCEEEEEECc
Confidence 35789999999999999999999999999999999998 78888887666554433 33579999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhcc-ceeecccccccce-eeeeehhh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFD-SICNNKWFTDTSI-ILFLNKKD 238 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~-~~~~~tsA~d~~~-I~~~f~~~ 238 (262)
||....-....+... ..-+-. .+...+...... +.+++|||+++++ |+++|...
T Consensus 116 DL~~~~~~~~~~~~~---~~~pIs--~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~ 171 (222)
T cd04173 116 DMRTDLATLRELSKQ---RLIPVT--HEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVA 171 (222)
T ss_pred ccccchhhhhhhhhc---cCCccC--HHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHH
Confidence 996421000000000 000000 111111111223 4688999999985 99999874
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-16 Score=127.20 Aligned_cols=124 Identities=10% Similarity=0.101 Sum_probs=88.2
Q ss_pred ecccceeEE--EEee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEV--HFSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~--~~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|+... .+.. ..+.+++||++|++.++.+|..++++++++|+|+|+++ ..++.+...|+..+.
T Consensus 30 ~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~----------~~s~~~~~~~~~~~~ 99 (168)
T cd04119 30 LPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTD----------RQSFEALDSWLKEMK 99 (168)
T ss_pred CCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCC----------HHHHHhHHHHHHHHH
Confidence 566665432 3333 35789999999999999999999999999999999998 566666666666665
Q ss_pred hCCC----CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKW----FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~----~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.... ..+.|+++++||+|+..++... ..-.........+.++++||++|.||.++|+.
T Consensus 100 ~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 161 (168)
T cd04119 100 QEGGPHGNMENIVVVVCANKIDLTKHRAVS-----------------EDEGRLWAESKGFKYFETSACTGEGVNEMFQT 161 (168)
T ss_pred HhccccccCCCceEEEEEEchhcccccccC-----------------HHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 4321 2568999999999986421100 01111111224467899999999999999964
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-16 Score=131.29 Aligned_cols=120 Identities=15% Similarity=0.137 Sum_probs=81.9
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHH-HHHHHHHhCCCCCCCeEEEEeeC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL-KLFDSICNNKWFTDTSIILFLNK 178 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~-~~~~~i~~~~~~~~~piil~~NK 178 (262)
..+.+++||++|++.++.+|..||++++++|+|+|+++ .+++.... .|+..+... ..++|++|++||
T Consensus 46 ~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~----------~~sf~~~~~~~~~~i~~~--~~~~piilvgNK 113 (189)
T cd04134 46 LHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDS----------PDSLENVESKWLGEIREH--CPGVKLVLVALK 113 (189)
T ss_pred EEEEEEEEECCCChhccccccccccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEEC
Confidence 34789999999999999999999999999999999998 67776664 355555532 247999999999
Q ss_pred CchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeeh
Q psy6623 179 KDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 179 ~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+|+..++-....+... +.......-....... +.+.+++|||++|.||+++|.
T Consensus 114 ~Dl~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~ 167 (189)
T cd04134 114 CDLREARNERDDLQRY-----GKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFT 167 (189)
T ss_pred hhhccChhhHHHHhhc-----cCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHH
Confidence 9997543211100000 0000001111111111 236789999999999999995
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.8e-17 Score=131.27 Aligned_cols=124 Identities=12% Similarity=0.123 Sum_probs=86.4
Q ss_pred ecccceeEE--EEee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEV--HFSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~--~~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.+|+|.... .+.+ +.+.+++||++|+++++.+|..|+++++++|+|+|+++ ..++.....|...+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~ 104 (170)
T cd04116 35 FHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDD----------SQSFQNLSNWKKEFI 104 (170)
T ss_pred CCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCC----------HHHHHhHHHHHHHHH
Confidence 466665432 3333 34788999999999999999999999999999999998 566666666666555
Q ss_pred hCC---CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNK---WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~---~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
... ...++|++|++||+|+....+....+ .++..+ + ..+.+++|||++|.||.++|..
T Consensus 105 ~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~--------------~~~~~~-~--~~~~~~e~Sa~~~~~v~~~~~~ 165 (170)
T cd04116 105 YYADVKEPESFPFVVLGNKNDIPERQVSTEEA--------------QAWCRE-N--GDYPYFETSAKDATNVAAAFEE 165 (170)
T ss_pred HhcccccCCCCcEEEEEECccccccccCHHHH--------------HHHHHH-C--CCCeEEEEECCCCCCHHHHHHH
Confidence 422 23568999999999986311110000 122211 1 2246789999999999999963
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-16 Score=132.19 Aligned_cols=122 Identities=13% Similarity=0.125 Sum_probs=90.0
Q ss_pred ecccceeE--EEEeee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|+.. ..+.+. .+.+.+||++|++.++.+|..|+++++++|+|+|+++ .+++.+...|+..+.
T Consensus 36 ~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~----------~~s~~~~~~~~~~i~ 105 (199)
T cd04110 36 ITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTN----------GESFVNVKRWLQEIE 105 (199)
T ss_pred CccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 46666443 333333 3678999999999999999999999999999999998 678888888888776
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.. ....|++|++||+|+...+... ............+.++++||++|.||.++|+.
T Consensus 106 ~~--~~~~piivVgNK~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~ 161 (199)
T cd04110 106 QN--CDDVCKVLVGNKNDDPERKVVE-----------------TEDAYKFAGQMGISLFETSAKENINVEEMFNC 161 (199)
T ss_pred Hh--CCCCCEEEEEECcccccccccC-----------------HHHHHHHHHHcCCEEEEEECCCCcCHHHHHHH
Confidence 53 2578999999999986422100 11111111123477889999999999999974
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-16 Score=128.30 Aligned_cols=126 Identities=13% Similarity=0.101 Sum_probs=88.2
Q ss_pred ecccceeE--EEEeee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|... ..+.++ .+++++||++|++.++.+|..+|++++++|+|+|+++ ..++.....|+..+.
T Consensus 30 ~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~----------~~s~~~~~~~~~~~~ 99 (170)
T cd04108 30 KATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTD----------VASLEHTRQWLEDAL 99 (170)
T ss_pred CCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 45555433 233333 3679999999999999999999999999999999988 667777778887776
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+.....+.|+++|+||.|+..+.- .... .........+....++++||++|.||.++|..
T Consensus 100 ~~~~~~~~~iilVgnK~Dl~~~~~--~~~~-------------~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~ 159 (170)
T cd04108 100 KENDPSSVLLFLVGTKKDLSSPAQ--YALM-------------EQDAIKLAAEMQAEYWSVSALSGENVREFFFR 159 (170)
T ss_pred HhcCCCCCeEEEEEEChhcCcccc--cccc-------------HHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 554445688999999999853210 0000 00111111113345678999999999999964
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >KOG0097|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-17 Score=126.76 Aligned_cols=124 Identities=13% Similarity=0.060 Sum_probs=89.6
Q ss_pred eecccceeEEE--Eee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHH
Q psy6623 86 RVKTTGIVEVH--FSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSI 161 (262)
Q Consensus 86 ~~pT~Gi~~~~--~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i 161 (262)
...|+|+...+ +++ ..+++++||++||++||....+||+++.+.+.|+|++. .......-.|+...
T Consensus 40 cphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditr----------rstynhlsswl~da 109 (215)
T KOG0097|consen 40 CPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR----------RSTYNHLSSWLTDA 109 (215)
T ss_pred CCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehh----------hhhhhhHHHHHhhh
Confidence 35678865433 333 45899999999999999999999999999999999997 33333333333333
Q ss_pred HhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 162 CNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 162 ~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+ -...+..|+|++||.||..++-...+..+.|.+- ..+.+.++||++|+||+..|-.
T Consensus 110 r~-ltnpnt~i~lignkadle~qrdv~yeeak~faee-----------------ngl~fle~saktg~nvedafle 167 (215)
T KOG0097|consen 110 RN-LTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEE-----------------NGLMFLEASAKTGQNVEDAFLE 167 (215)
T ss_pred hc-cCCCceEEEEecchhhhhhcccCcHHHHHHHHhh-----------------cCeEEEEecccccCcHHHHHHH
Confidence 22 2235788999999999987664444444444443 4477889999999999998854
|
|
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.4e-16 Score=127.10 Aligned_cols=123 Identities=16% Similarity=0.142 Sum_probs=89.5
Q ss_pred ecccceeE--EEEeee--ccceeeeecCCccccc-hhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSFK--NLNFKLFDVGGQRSER-KKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSI 161 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~~--~~~~~i~D~~Gq~~~r-~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i 161 (262)
.+|+|+.. ..+.++ .+.+++||++|++.++ .+|..|+++++++|+|+|+++ ..++.....|+..+
T Consensus 32 ~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~ 101 (170)
T cd04115 32 EATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTN----------MASFHSLPSWIEEC 101 (170)
T ss_pred ccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCC----------HHHHHhHHHHHHHH
Confidence 45666433 234443 3789999999999987 589999999999999999998 67788887777777
Q ss_pred HhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccc---cceeeeeeh
Q psy6623 162 CNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTD---TSIILFLNK 236 (262)
Q Consensus 162 ~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d---~~~I~~~f~ 236 (262)
.......++|++|++||+|+...+... ............+.+++|||++ +.+|.++|.
T Consensus 102 ~~~~~~~~~p~iiv~nK~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~ 162 (170)
T cd04115 102 EQHSLPNEVPRILVGNKCDLREQIQVP-----------------TDLAQRFADAHSMPLFETSAKDPSENDHVEAIFM 162 (170)
T ss_pred HHhcCCCCCCEEEEEECccchhhcCCC-----------------HHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHH
Confidence 665444679999999999987532111 1111111122446788999999 889999995
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.2e-16 Score=126.82 Aligned_cols=123 Identities=13% Similarity=0.143 Sum_probs=89.1
Q ss_pred ecccceeE--EEEeee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|... ..+.++ .+.+++||++|++.+...|..++++++++|+|+|+++ ..++.+...|+..+.
T Consensus 33 ~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~----------~~s~~~~~~~~~~i~ 102 (167)
T cd01867 33 ISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITD----------EKSFENIRNWMRNIE 102 (167)
T ss_pred ccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcC----------HHHHHhHHHHHHHHH
Confidence 45555432 233333 3688999999999999999999999999999999988 677777777777766
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
... ..++|++|++||+|+..++... ..-..+......+.++++||++|.||.++|..
T Consensus 103 ~~~-~~~~p~iiv~nK~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 159 (167)
T cd01867 103 EHA-SEDVERMLVGNKCDMEEKRVVS-----------------KEEGEALADEYGIKFLETSAKANINVEEAFFT 159 (167)
T ss_pred HhC-CCCCcEEEEEECcccccccCCC-----------------HHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 432 3578999999999997532100 11112222224567899999999999999963
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.8e-16 Score=125.76 Aligned_cols=106 Identities=14% Similarity=0.123 Sum_probs=79.4
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
+.+.+++||++|++.++..|..|+++++++|+|+|+++ ..++.+...|+..+.+. ..+.|++|++||+
T Consensus 47 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~ 114 (161)
T cd04124 47 KTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTR----------KITYKNLSKWYEELREY--RPEIPCIVVANKI 114 (161)
T ss_pred EEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh--CCCCcEEEEEECc
Confidence 45788999999999999999999999999999999987 55666666666666432 2468999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+.... .. . + ..+.. ...+.++++||++|.||.++|+.
T Consensus 115 Dl~~~~-~~----~------~-----~~~~~----~~~~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 115 DLDPSV-TQ----K------K-----FNFAE----KHNLPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred cCchhH-HH----H------H-----HHHHH----HcCCeEEEEeCCCCCCHHHHHHH
Confidence 984310 00 0 0 11111 13466788999999999999974
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-16 Score=126.19 Aligned_cols=108 Identities=13% Similarity=0.060 Sum_probs=82.6
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+++||++|++.++.+|..|+++++++++|+|+++ ..++.+...++..+.......+.|++|++||+|
T Consensus 48 ~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~----------~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~D 117 (162)
T cd04138 48 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINS----------RKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCD 117 (162)
T ss_pred EEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 3568899999999999999999999999999999998 667777777777776544446789999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+...... ..-.........+.+++|||++|.||+++|.
T Consensus 118 l~~~~~~------------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 155 (162)
T cd04138 118 LAARTVS------------------SRQGQDLAKSYGIPYIETSAKTRQGVEEAFY 155 (162)
T ss_pred cccceec------------------HHHHHHHHHHhCCeEEEecCCCCCCHHHHHH
Confidence 8642100 0111111122346788999999999999995
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.3e-16 Score=125.66 Aligned_cols=123 Identities=13% Similarity=0.153 Sum_probs=88.5
Q ss_pred ecccceeE--EEEeee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|... ..+.++ .+.+++||++|+++++..|..++++++++|+|+|+++ .+++.+...|+..+.
T Consensus 32 ~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~s~~~l~~~~~~~~ 101 (166)
T cd01869 32 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTD----------QESFNNVKQWLQEID 101 (166)
T ss_pred CCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcC----------HHHHHhHHHHHHHHH
Confidence 45555432 334343 4678999999999999999999999999999999998 677777777777765
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
... ..+.|+++++||+|+..++... .+-.........+.++++||++|+||.++|..
T Consensus 102 ~~~-~~~~~~iiv~nK~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 158 (166)
T cd01869 102 RYA-SENVNKLLVGNKCDLTDKRVVD-----------------YSEAQEFADELGIPFLETSAKNATNVEQAFMT 158 (166)
T ss_pred HhC-CCCCcEEEEEEChhcccccCCC-----------------HHHHHHHHHHcCCeEEEEECCCCcCHHHHHHH
Confidence 432 2468999999999986532100 01111111123467899999999999999963
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-16 Score=134.42 Aligned_cols=123 Identities=10% Similarity=0.077 Sum_probs=89.6
Q ss_pred ecccceeEE--EEeee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEV--HFSFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~--~~~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|+... .+.++ .+.+++||++|+++++.+|..++++++++|+|+|+++ ..+++....|+..+.
T Consensus 42 ~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~~~ 111 (216)
T PLN03110 42 KSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK----------RQTFDNVQRWLRELR 111 (216)
T ss_pred CCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCC----------hHHHHHHHHHHHHHH
Confidence 567776543 34443 4789999999999999999999999999999999998 567776667776665
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.. ...++|++|++||+|+...+-.. .+..........+.+++|||++|.||.++|+.
T Consensus 112 ~~-~~~~~piiiv~nK~Dl~~~~~~~-----------------~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~ 168 (216)
T PLN03110 112 DH-ADSNIVIMMAGNKSDLNHLRSVA-----------------EEDGQALAEKEGLSFLETSALEATNVEKAFQT 168 (216)
T ss_pred Hh-CCCCCeEEEEEEChhcccccCCC-----------------HHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 43 23579999999999985422110 01111111124577899999999999999974
|
|
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.8e-16 Score=123.92 Aligned_cols=122 Identities=12% Similarity=0.128 Sum_probs=88.2
Q ss_pred ecccceeEEE--Eeee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEVH--FSFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~~--~~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|..... +..+ .+.+++||++|++.++.+|..++++++++|+|+|+++ ..++.+...|+..+.
T Consensus 33 ~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~ 102 (165)
T cd01868 33 KSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK----------KQTFENVERWLKELR 102 (165)
T ss_pred CCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 4555643332 3333 3678999999999999999999999999999999998 677777777777766
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcch-hHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGE-RNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~-~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
... ..++|++|++||+|+...+.... .+ ..+.. ...+.++++||++|.||.++|+.
T Consensus 103 ~~~-~~~~pi~vv~nK~Dl~~~~~~~~--------------~~~~~~~~----~~~~~~~~~Sa~~~~~v~~l~~~ 159 (165)
T cd01868 103 DHA-DSNIVIMLVGNKSDLRHLRAVPT--------------EEAKAFAE----KNGLSFIETSALDGTNVEEAFKQ 159 (165)
T ss_pred HhC-CCCCeEEEEEECccccccccCCH--------------HHHHHHHH----HcCCEEEEEECCCCCCHHHHHHH
Confidence 542 34689999999999865321100 00 12221 24567889999999999999963
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.2e-16 Score=132.40 Aligned_cols=110 Identities=11% Similarity=0.070 Sum_probs=85.1
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC--------CCCCCeE
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK--------WFTDTSI 172 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~--------~~~~~pi 172 (262)
.+.++||||+|++.++.++..++.+++++|+|+|+++ ..++++...|++.+.... ...++|+
T Consensus 47 ~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~----------~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~pi 116 (247)
T cd04143 47 VYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDN----------RESFEEVCRLREQILETKSCLKNKTKENVKIPM 116 (247)
T ss_pred EEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhhcccccccccCCCCcE
Confidence 3778999999999999999999999999999999998 788888888888887542 2357899
Q ss_pred EEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehh
Q psy6623 173 ILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 173 il~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+|++||+|+..++- +. .+-+.+.+.. ..+.++++||++|.||+++|..
T Consensus 117 IivgNK~Dl~~~~~----v~-------------~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~ 165 (247)
T cd04143 117 VICGNKADRDFPRE----VQ-------------RDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRA 165 (247)
T ss_pred EEEEECccchhccc----cC-------------HHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999964211 00 1122222211 3467899999999999999964
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.3e-16 Score=128.48 Aligned_cols=121 Identities=12% Similarity=0.138 Sum_probs=78.4
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHH-HHHHHHhCCCCCCCeEEEEeeC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLK-LFDSICNNKWFTDTSIILFLNK 178 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~-~~~~i~~~~~~~~~piil~~NK 178 (262)
..+++++|||+||+. .....||++++++|+|+|+++ ..+++.... |...+... ..++|++|+|||
T Consensus 64 ~~v~l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~----------~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK 129 (195)
T cd01873 64 VSVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIAS----------PNSLRNVKTMWYPEIRHF--CPRVPVILVGCK 129 (195)
T ss_pred EEEEEEEEeCCCChh--hhhcccCCCCCEEEEEEECCC----------hhHHHHHHHHHHHHHHHh--CCCCCEEEEEEc
Confidence 357899999999975 355679999999999999998 677877764 55555432 247899999999
Q ss_pred Cchhhhhhcc-----CCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 179 KDLFEEKIKK-----SPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 179 ~Dl~~~kl~~-----~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+||....... .++..- -.+......+-..+......+.+++|||++|+||+++|..
T Consensus 130 ~DL~~~~~~~~~~~~~~~~~~---~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~ 190 (195)
T cd01873 130 LDLRYADLDEVNRARRPLARP---IKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDN 190 (195)
T ss_pred hhccccccchhhhcccccccc---cccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHH
Confidence 9986421100 000000 0000000011122222224567899999999999999964
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-15 Score=125.76 Aligned_cols=112 Identities=16% Similarity=0.178 Sum_probs=80.2
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHH-HHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLK-LFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~-~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+.+++|||+|++.++.+|..++++++++|+|+|+++ .+++++... |+..+... ..++|++|++||+
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~ 115 (187)
T cd04132 48 IIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDN----------PTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKT 115 (187)
T ss_pred EEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEeCh
Confidence 4678999999999999999999999999999999998 677777754 44444322 2478999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~~ 237 (262)
|+..+......+. ..-..+......+ .+++|||++|.||.++|..
T Consensus 116 Dl~~~~~~~~~v~-------------~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ 161 (187)
T cd04132 116 DLRKDKNLDRKVT-------------PAQAESVAKKQGAFAYLECSAKTMENVEEVFDT 161 (187)
T ss_pred hhhhCccccCCcC-------------HHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHH
Confidence 9965321111110 1111111111233 6789999999999999974
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-16 Score=124.65 Aligned_cols=125 Identities=18% Similarity=0.273 Sum_probs=95.4
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|+....+..+++.+.+||++|++.++..|..++++++++++|+|+++ ..++.....++..+.....
T Consensus 29 ~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~ 98 (159)
T cd04159 29 IPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAAD----------RTALEAAKNELHDLLEKPS 98 (159)
T ss_pred cCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHcChh
Confidence 688888877777788999999999999999999999999999999999997 5667777778888776655
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHH-HHHhhhccceeecccccccceeeeeeh
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRM-QESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i-~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
..+.|++|++||+|+..+.. .... ...+ ......+.+.++++||++|.||.++|+
T Consensus 99 ~~~~p~iiv~nK~D~~~~~~----~~~~-----------~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (159)
T cd04159 99 LEGIPLLVLGNKNDLPGALS----VDEL-----------IEQMNLKSITDREVSCYSISCKEKTNIDIVLD 154 (159)
T ss_pred hcCCCEEEEEeCccccCCcC----HHHH-----------HHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence 56899999999999864210 0000 0000 001112446778999999999999985
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.1e-16 Score=123.06 Aligned_cols=110 Identities=15% Similarity=0.102 Sum_probs=84.3
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+++|||+|++.++.+|..++++++++|+|+|+++ ..++.....|+..+.+.....+.|++|++||+|
T Consensus 49 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D 118 (164)
T cd04145 49 WAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTD----------RGSFEEVDKFHTQILRVKDRDEFPMILVGNKAD 118 (164)
T ss_pred EEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcc
Confidence 4678999999999999999999999999999999998 677778777877777643345789999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+..++. +. .....+......+.++++||++|.||.++|+.
T Consensus 119 l~~~~~----~~-------------~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 158 (164)
T cd04145 119 LEHQRK----VS-------------REEGQELARKLKIPYIETSAKDRLNVDKAFHD 158 (164)
T ss_pred ccccce----ec-------------HHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHH
Confidence 865321 00 11111111223466789999999999999963
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.2e-16 Score=123.87 Aligned_cols=110 Identities=13% Similarity=0.130 Sum_probs=80.4
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC--CCCCCCeEEEEee
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN--KWFTDTSIILFLN 177 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~--~~~~~~piil~~N 177 (262)
+.+.+++||++|+++++.+|..++++++++|+|+|+++ ..++.+...+++.+.+. ....++|++|++|
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~~piilv~n 116 (165)
T cd04140 47 NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTS----------KQSLEELKPIYELICEIKGNNIEKIPIMLVGN 116 (165)
T ss_pred EEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEE
Confidence 45789999999999999999999999999999999998 56666666666555432 1235789999999
Q ss_pred CCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 178 KKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 178 K~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
|+|+...+ ++. .+..........+.++++||++|.||+++|+
T Consensus 117 K~Dl~~~~----~v~-------------~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~ 158 (165)
T cd04140 117 KCDESHKR----EVS-------------SNEGAACATEWNCAFMETSAKTNHNVQELFQ 158 (165)
T ss_pred CccccccC----eec-------------HHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Confidence 99985421 110 0011111112345678999999999999995
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.9e-16 Score=123.34 Aligned_cols=110 Identities=14% Similarity=0.089 Sum_probs=83.4
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
+.+.+.+||++|+++++.+|..++++++++|+|+|+++ ..++.+...++..+.+.....++|+++++||+
T Consensus 46 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~ 115 (164)
T smart00173 46 EVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITD----------RQSFEEIKKFREQILRVKDRDDVPIVLVGNKC 115 (164)
T ss_pred EEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 34788999999999999999999999999999999998 67777777777777654444578999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
|+..++....... ..+.. ...+.++++||++|.||.++|+
T Consensus 116 Dl~~~~~~~~~~~-------------~~~~~----~~~~~~~~~Sa~~~~~i~~l~~ 155 (164)
T smart00173 116 DLESERVVSTEEG-------------KELAR----QWGCPFLETSAKERVNVDEAFY 155 (164)
T ss_pred cccccceEcHHHH-------------HHHHH----HcCCEEEEeecCCCCCHHHHHH
Confidence 9865321100000 11221 1346688999999999999996
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-15 Score=123.28 Aligned_cols=122 Identities=14% Similarity=0.121 Sum_probs=89.6
Q ss_pred ecccceeEE--EEee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEV--HFSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~--~~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.+|+|.... .+.. +.+.+.+||++|++.++.++..++++++++|+|+|+++ .+++.....|+..+.
T Consensus 34 ~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~----------~~s~~~~~~~~~~~~ 103 (168)
T cd01866 34 DLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLTSWLEDAR 103 (168)
T ss_pred CCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 355564332 2333 34789999999999999999999999999999999998 678888888887776
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
... ..++|++|++||.|+..++. .. ............+.++++||++++||.++|.
T Consensus 104 ~~~-~~~~pvivv~nK~Dl~~~~~----~~-------------~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~ 159 (168)
T cd01866 104 QHS-NSNMTIMLIGNKCDLESRRE----VS-------------YEEGEAFAKEHGLIFMETSAKTASNVEEAFI 159 (168)
T ss_pred HhC-CCCCcEEEEEECcccccccC----CC-------------HHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 542 35799999999999864211 00 1112222222457789999999999999995
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=4e-16 Score=128.78 Aligned_cols=109 Identities=10% Similarity=0.109 Sum_probs=81.8
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+++||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+.... ..++|++|++||+|
T Consensus 48 ~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~----------~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~D 116 (188)
T cd04125 48 IIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTD----------QESFENLKFWINEINRYA-RENVIKVIVANKSD 116 (188)
T ss_pred EEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCC
Confidence 4778999999999999999999999999999999998 677777777776665432 24589999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+...+....... ..+.. ...+.++++||++|.||+++|..
T Consensus 117 l~~~~~v~~~~~-------------~~~~~----~~~~~~~evSa~~~~~i~~~f~~ 156 (188)
T cd04125 117 LVNNKVVDSNIA-------------KSFCD----SLNIPFFETSAKQSINVEEAFIL 156 (188)
T ss_pred CcccccCCHHHH-------------HHHHH----HcCCeEEEEeCCCCCCHHHHHHH
Confidence 874321110000 11211 13456889999999999999974
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-15 Score=122.23 Aligned_cols=123 Identities=20% Similarity=0.210 Sum_probs=91.7
Q ss_pred ecccceeEEEEee----eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEVHFSF----KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~~~~~----~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|.......+ ..+.+++||++|++.+..++..++++++++|+|+|+++ .+++.....|+..+.
T Consensus 29 ~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~----------~~S~~~~~~~~~~i~ 98 (162)
T PF00071_consen 29 IPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTD----------EESFENLKKWLEEIQ 98 (162)
T ss_dssp ETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTB----------HHHHHTHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccc----------ccccccccccccccc
Confidence 5666655443333 45789999999999999999999999999999999998 678888777777766
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.... .++|++|+|||.|+..++. +. .+-........+..++++||+++.||.++|..
T Consensus 99 ~~~~-~~~~iivvg~K~D~~~~~~----v~-------------~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ 155 (162)
T PF00071_consen 99 KYKP-EDIPIIVVGNKSDLSDERE----VS-------------VEEAQEFAKELGVPYFEVSAKNGENVKEIFQE 155 (162)
T ss_dssp HHST-TTSEEEEEEETTTGGGGSS----SC-------------HHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHH
T ss_pred cccc-ccccceeeecccccccccc----ch-------------hhHHHHHHHHhCCEEEEEECCCCCCHHHHHHH
Confidence 5432 5699999999999976221 10 11112222234478899999999999999974
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-15 Score=121.54 Aligned_cols=109 Identities=16% Similarity=0.135 Sum_probs=84.7
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.++++.+||++|+++++..|..++++++++|+|+|+++ ..++..+..++..+..... .++|++|++||+
T Consensus 48 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~ 116 (163)
T cd01860 48 TTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITS----------EESFEKAKSWVKELQRNAS-PNIIIALVGNKA 116 (163)
T ss_pred EEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhCC-CCCeEEEEEECc
Confidence 45789999999999999999999999999999999998 6778888888888765533 679999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
|+...+.. + ............+.++++||++|.|+.++|+
T Consensus 117 D~~~~~~~--~---------------~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd01860 117 DLESKRQV--S---------------TEEAQEYADENGLLFFETSAKTGENVNELFT 156 (163)
T ss_pred cccccCcC--C---------------HHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 98642110 0 1111121222347789999999999999995
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-15 Score=122.36 Aligned_cols=122 Identities=11% Similarity=0.072 Sum_probs=87.9
Q ss_pred eccccee--EEEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIV--EVHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~--~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.+|+|.. ...+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.
T Consensus 33 ~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~----------~~s~~~~~~~~~~i~ 102 (165)
T cd01864 33 GNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITR----------RSSFESVPHWIEEVE 102 (165)
T ss_pred CCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcC----------HHHHHhHHHHHHHHH
Confidence 3555533 33444444 688999999999999999999999999999999998 667777777777776
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeeh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~ 236 (262)
... ..++|++|++||+|+...+... .+........ +...++++||++|.||.++|+
T Consensus 103 ~~~-~~~~p~ivv~nK~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~ 159 (165)
T cd01864 103 KYG-ASNVVLLLIGNKCDLEEQREVL-----------------FEEACTLAEKNGMLAVLETSAKESQNVEEAFL 159 (165)
T ss_pred HhC-CCCCcEEEEEECcccccccccC-----------------HHHHHHHHHHcCCcEEEEEECCCCCCHHHHHH
Confidence 432 3578999999999986532100 1111111111 234678999999999999995
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-15 Score=121.54 Aligned_cols=108 Identities=9% Similarity=0.044 Sum_probs=82.4
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+++||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+... ...++|++|++||.|
T Consensus 48 ~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D 116 (161)
T cd04113 48 RVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITN----------RTSFEALPTWLSDARAL-ASPNIVVILVGNKSD 116 (161)
T ss_pred EEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchh
Confidence 4678999999999999999999999999999999998 56777777776665432 235789999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+..++. . . .+.+........+.++++||+++.||.++|+
T Consensus 117 ~~~~~~----~-----------~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 155 (161)
T cd04113 117 LADQRE----V-----------T--FLEASRFAQENGLLFLETSALTGENVEEAFL 155 (161)
T ss_pred cchhcc----C-----------C--HHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 865210 0 0 1122222223457899999999999999995
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-15 Score=122.41 Aligned_cols=111 Identities=14% Similarity=0.164 Sum_probs=81.3
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+++++||++|++.++.+|..|+++++++++|+|+++ ..++.....|...+.. ...++|++|++||.|
T Consensus 50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~----------~~s~~~l~~~~~~~~~--~~~~~p~iiv~nK~D 117 (162)
T cd04106 50 DVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTD----------RESFEAIESWKEKVEA--ECGDIPMVLVQTKID 117 (162)
T ss_pred EEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHH--hCCCCCEEEEEEChh
Confidence 4789999999999999999999999999999999998 5666666666655543 235799999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 242 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~ 242 (262)
+..+..... .+...+.+ ...+.++++||+++.|++++|+ +|..
T Consensus 118 l~~~~~v~~--------------~~~~~~~~---~~~~~~~~~Sa~~~~~v~~l~~--~l~~ 160 (162)
T cd04106 118 LLDQAVITN--------------EEAEALAK---RLQLPLFRTSVKDDFNVTELFE--YLAE 160 (162)
T ss_pred cccccCCCH--------------HHHHHHHH---HcCCeEEEEECCCCCCHHHHHH--HHHH
Confidence 965321100 00111111 1346678999999999999994 4443
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.5e-16 Score=122.53 Aligned_cols=126 Identities=23% Similarity=0.307 Sum_probs=99.7
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+.+|+|+....+.++++.+.+||++|++.++..|..++++++++++|+|+++ ..++.++..++..+....
T Consensus 27 ~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~----------~~~~~~~~~~~~~~~~~~ 96 (158)
T cd00878 27 TIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSD----------RERIEEAKEELHKLLNEE 96 (158)
T ss_pred CCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHhCc
Confidence 3678888888888889999999999999999999999999999999999998 678999999999988765
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHH-hhhccceeecccccccceeeeeeh
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQES-LKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~-f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
...+.|+++++||+|+..+. ...++ .+.+... ...+.+.++++||++|.|+.++|+
T Consensus 97 ~~~~~piiiv~nK~D~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 97 ELKGVPLLIFANKQDLPGAL-SVSEL--------------IEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred ccCCCcEEEEeeccCCcccc-CHHHH--------------HHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 56689999999999986521 00000 1111110 112456788999999999999996
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-15 Score=125.12 Aligned_cols=123 Identities=15% Similarity=0.201 Sum_probs=87.9
Q ss_pred ecccceeEEE--Eeee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEVH--FSFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~~--~~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.+|+|..... +.++ .+.+++||++||++++..|..++++++++|+|+|+++ .+++.+...|+..+.
T Consensus 31 ~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~----------~~s~~~~~~~~~~i~ 100 (191)
T cd04112 31 IATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITN----------KASFDNIRAWLTEIK 100 (191)
T ss_pred CCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 3455544322 3333 4789999999999999999999999999999999998 677777777776665
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.. ...++|++|++||+|+..++.... .+...+.. ...+.++++||++|.||.++|..
T Consensus 101 ~~-~~~~~piiiv~NK~Dl~~~~~~~~--------------~~~~~l~~---~~~~~~~e~Sa~~~~~v~~l~~~ 157 (191)
T cd04112 101 EY-AQEDVVIMLLGNKADMSGERVVKR--------------EDGERLAK---EYGVPFMETSAKTGLNVELAFTA 157 (191)
T ss_pred Hh-CCCCCcEEEEEEcccchhccccCH--------------HHHHHHHH---HcCCeEEEEeCCCCCCHHHHHHH
Confidence 43 224789999999999864321110 00111211 13456889999999999999964
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=3e-15 Score=119.82 Aligned_cols=122 Identities=16% Similarity=0.206 Sum_probs=89.3
Q ss_pred ecccceeE--EEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|... ..+.+++ +++++||++|++.++..|..++++++++|+|+|+++ .+++.+...++..+.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~s~~~~~~~~~~~~ 99 (161)
T cd01861 30 QATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITN----------RQSFDNTDKWIDDVR 99 (161)
T ss_pred CCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 56666443 2333333 679999999999999999999999999999999998 677888888888776
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
... ..++|++|++||+|+..++... .+..........+.++++||+++.|++++|+
T Consensus 100 ~~~-~~~~~iilv~nK~D~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 155 (161)
T cd01861 100 DER-GNDVIIVLVGNKTDLSDKRQVS-----------------TEEGEKKAKELNAMFIETSAKAGHNVKELFR 155 (161)
T ss_pred HhC-CCCCEEEEEEEChhccccCccC-----------------HHHHHHHHHHhCCEEEEEeCCCCCCHHHHHH
Confidence 532 2379999999999985321100 1112222222447788999999999999995
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.6e-15 Score=119.94 Aligned_cols=120 Identities=15% Similarity=0.159 Sum_probs=81.6
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHH-HHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLK-LFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~-~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+.+++|||+|++.++.+|..++++++++|+|+|+++ ..++++... |+..+... ..++|++|++||+
T Consensus 45 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~ 112 (174)
T smart00174 45 PVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDS----------PASFENVKEKWYPEVKHF--CPNTPIILVGTKL 112 (174)
T ss_pred EEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhh--CCCCCEEEEecCh
Confidence 4678999999999999999999999999999999998 677777654 55555432 3579999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhcc-ceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFD-SICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~-~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+..++....++.. .... ....+-......... ..++++||++|.||.++|..
T Consensus 113 Dl~~~~~~~~~~~~----~~~~-~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~ 166 (174)
T smart00174 113 DLREDKSTLRELSK----QKQE-PVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEE 166 (174)
T ss_pred hhhhChhhhhhhhc----ccCC-CccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHH
Confidence 99763321111111 0000 000111111111122 35788999999999999974
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.6e-15 Score=125.61 Aligned_cols=123 Identities=14% Similarity=0.124 Sum_probs=88.9
Q ss_pred ecccceeE--EEEee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|... ..+.+ ..+.+++||++|++.++.+|..++++++++|+|+|+++ ..++.....|+..+.
T Consensus 36 ~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~----------~~s~~~l~~~~~~~~ 105 (210)
T PLN03108 36 DLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLASWLEDAR 105 (210)
T ss_pred CCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCc----------HHHHHHHHHHHHHHH
Confidence 45666443 22333 34678999999999999999999999999999999998 677777767777665
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
... ..+.|+++++||+|+..++... .+..........+.++++||+++.||.++|..
T Consensus 106 ~~~-~~~~piiiv~nK~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~ 162 (210)
T PLN03108 106 QHA-NANMTIMLIGNKCDLAHRRAVS-----------------TEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (210)
T ss_pred Hhc-CCCCcEEEEEECccCccccCCC-----------------HHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 432 2578999999999986532110 11111111224577899999999999999964
|
|
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.2e-15 Score=124.90 Aligned_cols=119 Identities=13% Similarity=0.155 Sum_probs=83.6
Q ss_pred cceeeeecCCccccc----hh----hhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC--CCCCCe
Q psy6623 102 LNFKLFDVGGQRSER----KK----WIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK--WFTDTS 171 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r----~~----w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~--~~~~~p 171 (262)
+.+++|||+|++.+. .. ...++++++++|+|+|+++ ..+++....+++.+.+.. ...++|
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~----------~~S~~~~~~~~~~i~~~~~~~~~~~p 118 (198)
T cd04142 49 YDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICS----------PDSFHYVKLLRQQILETRPAGNKEPP 118 (198)
T ss_pred EEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcccCCCCCC
Confidence 678899999976432 11 3446899999999999998 788888888888887653 246799
Q ss_pred EEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhh-hccceeecccccccceeeeeehhhHHHhhccCCC
Q psy6623 172 IILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLK-LFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSP 248 (262)
Q Consensus 172 iil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~-~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~~~~ 248 (262)
++|++||+|+..++... ...+..... ...+.+++|||++|.||+++|.. ++...+.+..
T Consensus 119 iiivgNK~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~-i~~~~~~~~~ 178 (198)
T cd04142 119 IVVVGNKRDQQRHRFAP-----------------RHVLSVLVRKSWKCGYLECSAKYNWHILLLFKE-LLISATTRGR 178 (198)
T ss_pred EEEEEECcccccccccc-----------------HHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHH-HHHHhhccCC
Confidence 99999999996532211 111111111 13466789999999999999974 5555555443
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.4e-15 Score=120.87 Aligned_cols=123 Identities=15% Similarity=0.151 Sum_probs=81.4
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHH-HHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLK-LFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~-~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+++++||++|++.++.+|..++++++++|+|+|+++ ..++..... |+..+... ..++|++|++||.
T Consensus 47 ~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~----------~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~ 114 (173)
T cd04130 47 PVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVN----------PSSFQNISEKWIPEIRKH--NPKAPIILVGTQA 114 (173)
T ss_pred EEEEEEEECCCChhhccccccccCCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHhh--CCCCCEEEEeeCh
Confidence 4678999999999999999999999999999999998 677777653 55555432 3468999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhcc-ceeecccccccceeeeeehhhHH
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFD-SICNNKWFTDTSIILFLNKKDLF 240 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~-~~~~~tsA~d~~~I~~~f~~~lL 240 (262)
|+..+.-....+... ++ -.-. .+-......... ..+++|||++|.||+++|+..+|
T Consensus 115 Dl~~~~~~~~~~~~~-~~--~~v~--~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 115 DLRTDVNVLIQLARY-GE--KPVS--QSRAKALAEKIGACEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred hhccChhHHHHHhhc-CC--CCcC--HHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence 986421100000000 00 0000 111111111122 36889999999999999986444
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.8e-15 Score=121.92 Aligned_cols=106 Identities=10% Similarity=-0.018 Sum_probs=77.0
Q ss_pred cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCch
Q psy6623 102 LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl 181 (262)
+.+.+||++|++.++.+|..||++++++|+|+|+++ ..++.....++..+.. ..++|+++++||+|+
T Consensus 54 ~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~----------~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl 120 (169)
T cd01892 54 KYLILREVGEDEVAILLNDAELAACDVACLVYDSSD----------PKSFSYCAEVYKKYFM---LGEIPCLFVAAKADL 120 (169)
T ss_pred EEEEEEecCCcccccccchhhhhcCCEEEEEEeCCC----------HHHHHHHHHHHHHhcc---CCCCeEEEEEEcccc
Confidence 678999999999999999999999999999999988 5666666666665432 237999999999998
Q ss_pred hhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeehh
Q psy6623 182 FEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 182 ~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~~ 237 (262)
..++..... +.+-+.+.+ .+ .++++||++|.||.++|+.
T Consensus 121 ~~~~~~~~~--------------~~~~~~~~~---~~~~~~~~Sa~~~~~v~~lf~~ 160 (169)
T cd01892 121 DEQQQRYEV--------------QPDEFCRKL---GLPPPLHFSSKLGDSSNELFTK 160 (169)
T ss_pred ccccccccc--------------CHHHHHHHc---CCCCCEEEEeccCccHHHHHHH
Confidence 643211000 011112211 12 3478999999999999964
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.8e-15 Score=120.01 Aligned_cols=112 Identities=9% Similarity=0.074 Sum_probs=83.3
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
..+.+++||++|++.++.+|..++++++++|+|+|+++ .++++....+...+.......++|+++++||.
T Consensus 47 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~----------~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~ 116 (168)
T cd04177 47 RQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTS----------EASLNELGELREQVLRIKDSDNVPMVLVGNKA 116 (168)
T ss_pred EEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhhCCCCCCEEEEEECh
Confidence 34788999999999999999999999999999999998 66777777777777654334579999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+...+.... .+...+.+.+ +.+.++++||+.|.||.++|+.
T Consensus 117 D~~~~~~~~~--------------~~~~~~~~~~--~~~~~~~~SA~~~~~i~~~f~~ 158 (168)
T cd04177 117 DLEDDRQVSR--------------EDGVSLSQQW--GNVPFYETSARKRTNVDEVFID 158 (168)
T ss_pred hccccCccCH--------------HHHHHHHHHc--CCceEEEeeCCCCCCHHHHHHH
Confidence 9865321100 0011111211 2255789999999999999963
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.2e-15 Score=119.04 Aligned_cols=109 Identities=10% Similarity=0.099 Sum_probs=84.6
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+.+||++|++.+...|..++++++++|+|+|+++ ..+++....|+..+.......++|+++++||+|
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D 117 (161)
T cd01863 48 KVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTR----------RDTFTNLETWLNELETYSTNNDIVKMLVGNKID 117 (161)
T ss_pred EEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCC----------HHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCc
Confidence 4789999999999999999999999999999999998 677777777777776654456899999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+...... .+..........+.++++||++|+||.++|+.
T Consensus 118 ~~~~~~~------------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 156 (161)
T cd01863 118 KENREVT------------------REEGLKFARKHNMLFIETSAKTRDGVQQAFEE 156 (161)
T ss_pred ccccccC------------------HHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence 9631100 11111111225677899999999999999963
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.3e-15 Score=121.59 Aligned_cols=126 Identities=13% Similarity=0.112 Sum_probs=86.7
Q ss_pred ecccceeE--EEEeee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|... ..+.++ .+.+++||++|+++++.+|..+|++++++|+|+|+++ ..++.+...|+..+.
T Consensus 31 ~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~----------~~s~~~~~~~~~~i~ 100 (193)
T cd04118 31 QNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTD----------SSSFERAKFWVKELQ 100 (193)
T ss_pred ccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 45555332 234443 3678899999999999999999999999999999998 677777666776665
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+. ..++|++|++||+|+....-....+. ...+........+.++++||++|.||.++|+.
T Consensus 101 ~~--~~~~piilv~nK~Dl~~~~~~~~~v~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 160 (193)
T cd04118 101 NL--EEHCKIYLCGTKSDLIEQDRSLRQVD-------------FHDVQDFADEIKAQHFETSSKTGQNVDELFQK 160 (193)
T ss_pred hc--CCCCCEEEEEEcccccccccccCccC-------------HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 43 24789999999999854210000000 11111111123456789999999999999975
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.5e-15 Score=117.11 Aligned_cols=109 Identities=16% Similarity=0.177 Sum_probs=81.4
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
..+.+.+||++|++.++.+|..++++++++|+|+|+++ .+++.....+++.+..... .++|+++++||+
T Consensus 47 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~ 115 (162)
T cd04123 47 KRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITD----------ADSFQKVKKWIKELKQMRG-NNISLVIVGNKI 115 (162)
T ss_pred EEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhCC-CCCeEEEEEECc
Confidence 34679999999999999999999999999999999998 5666666666666654322 378999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
|+..++ ++. .+.+........+.++++||+++.||.++|+
T Consensus 116 D~~~~~----~~~-------------~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~ 155 (162)
T cd04123 116 DLERQR----VVS-------------KSEAEEYAKSVGAKHFETSAKTGKGIEELFL 155 (162)
T ss_pred cccccc----CCC-------------HHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 987422 110 1122222222456678999999999999995
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.5e-15 Score=117.94 Aligned_cols=107 Identities=12% Similarity=0.077 Sum_probs=79.5
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+++.+||++|++.++.+|..++++++++|+|+|+++ ..++.+...|++.+.... .++|++|++||+|
T Consensus 51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~D 118 (164)
T cd04101 51 TVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSN----------KASFENCSRWVNKVRTAS--KHMPGVLVGNKMD 118 (164)
T ss_pred EEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhC--CCCCEEEEEECcc
Confidence 4789999999999999999999999999999999998 566766666766665432 4689999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+..+. .+.. ....... ....+.++.+||++|.||.++|+
T Consensus 119 l~~~~----~~~~----------~~~~~~~---~~~~~~~~~~Sa~~~~gi~~l~~ 157 (164)
T cd04101 119 LADKA----EVTD----------AQAQAFA---QANQLKFFKTSALRGVGYEEPFE 157 (164)
T ss_pred ccccc----CCCH----------HHHHHHH---HHcCCeEEEEeCCCCCChHHHHH
Confidence 85421 1100 0011111 11235678999999999999995
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.4e-15 Score=123.30 Aligned_cols=124 Identities=14% Similarity=0.103 Sum_probs=88.2
Q ss_pred ecccceeE--EEEeee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|... ..+.++ .+.+.+||++|++.++.+|..|+++++++|+|+|+++ ..++.+....|...+
T Consensus 43 ~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~----------~~sf~~~~~~~~~~~ 112 (211)
T PLN03118 43 APTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTR----------RETFTNLSDVWGKEV 112 (211)
T ss_pred CCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 35666433 334443 4678999999999999999999999999999999998 667777766565544
Q ss_pred hC-CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NN-KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~-~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.. ....+.|++|++||+|+..++. +. ............+.++++||++|.||+++|..
T Consensus 113 ~~~~~~~~~~~ilv~NK~Dl~~~~~----i~-------------~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~ 171 (211)
T PLN03118 113 ELYSTNQDCVKMLVGNKVDRESERD----VS-------------REEGMALAKEHGCLFLECSAKTRENVEQCFEE 171 (211)
T ss_pred HHhcCCCCCCEEEEEECccccccCc----cC-------------HHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 32 2235689999999999865321 10 11111222224567889999999999999964
|
|
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.5e-15 Score=119.86 Aligned_cols=129 Identities=16% Similarity=0.241 Sum_probs=96.7
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||.|++...+...+..+.+||++|++.++..|..++++++++++|+|.++ ..++.+...++..+.....
T Consensus 43 ~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~----------~~~~~~~~~~~~~~~~~~~ 112 (173)
T cd04155 43 TPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSAD----------KKRLEEAGAELVELLEEEK 112 (173)
T ss_pred CCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhChh
Confidence 577888777778888999999999999999999999999999999999998 5677888888888776554
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHH
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFE 241 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~ 241 (262)
..++|+++++||+|+.... ....+.+.+ + ...+..+.+.+.++||++|+||+++| .||.
T Consensus 113 ~~~~p~ivv~nK~D~~~~~-~~~~i~~~l----~---------~~~~~~~~~~~~~~Sa~~~~gi~~~~--~~l~ 171 (173)
T cd04155 113 LAGVPVLVFANKQDLATAA-PAEEIAEAL----N---------LHDLRDRTWHIQACSAKTGEGLQEGM--NWVC 171 (173)
T ss_pred hcCCCEEEEEECCCCccCC-CHHHHHHHc----C---------CcccCCCeEEEEEeECCCCCCHHHHH--HHHh
Confidence 5679999999999985421 000000000 0 00112245667899999999999999 4553
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.1e-15 Score=123.13 Aligned_cols=102 Identities=19% Similarity=0.229 Sum_probs=76.0
Q ss_pred ccccCCCCCCcCccccceeeecccceeE--EEEee-------eccceeeeecCCccccchhhhccccCCCEEEEeeeccc
Q psy6623 67 LDRLGAKEYQPTEQDILRTRVKTTGIVE--VHFSF-------KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSE 137 (262)
Q Consensus 67 l~ri~~~~y~pt~~Dil~~~~pT~Gi~~--~~~~~-------~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~ 137 (262)
+.|+....|.++ +.||+|... ..+.+ +.+.+++||++|++.++.++..||++++++|+|+|+++
T Consensus 17 i~~~~~~~f~~~-------~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn 89 (202)
T cd04102 17 VHLICKNQVLGR-------PSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTN 89 (202)
T ss_pred HHHHHcCCCCCC-------CCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcC
Confidence 344555555442 256777433 23333 23679999999999999999999999999999999999
Q ss_pred cccccccCcccccHHHHHHHHHHHHhCC------------------CCCCCeEEEEeeCCchhhhh
Q psy6623 138 YDQVLHEDETTNRMQESLKLFDSICNNK------------------WFTDTSIILFLNKKDLFEEK 185 (262)
Q Consensus 138 ~d~~~~e~~~~~~l~e~~~~~~~i~~~~------------------~~~~~piil~~NK~Dl~~~k 185 (262)
..+++....|+..+.+.. ...++|++|+|||.|+..++
T Consensus 90 ----------~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r 145 (202)
T cd04102 90 ----------RKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEK 145 (202)
T ss_pred ----------hHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhc
Confidence 677877777877776521 12468999999999997654
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-14 Score=121.24 Aligned_cols=110 Identities=17% Similarity=0.170 Sum_probs=83.0
Q ss_pred cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCch
Q psy6623 102 LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl 181 (262)
+++++||++|+..++.+|..++++++++|+|+|+++ ..++.+...++..+.......++|++|++||+|+
T Consensus 47 ~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 116 (198)
T cd04147 47 LTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDD----------PESFEEVERLREEILEVKEDKFVPIVVVGNKADS 116 (198)
T ss_pred EEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccc
Confidence 788999999999999999999999999999999998 6778888888777776544467999999999998
Q ss_pred hhhhhccCCCcccCCCCCCCCcchhHHHHHHhh-hccceeecccccccceeeeeehh
Q psy6623 182 FEEKIKKSPLTICFPEYAGKRPGERNRMQESLK-LFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 182 ~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~-~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.... ..+. ..-..+.+. ...+.++++||++|.||.++|+.
T Consensus 117 ~~~~---~~v~-------------~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 157 (198)
T cd04147 117 LEEE---RQVP-------------AKDALSTVELDWNCGFVETSAKDNENVLEVFKE 157 (198)
T ss_pred cccc---cccc-------------HHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHH
Confidence 6420 0010 011111111 12245678999999999999964
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-14 Score=116.60 Aligned_cols=110 Identities=9% Similarity=0.053 Sum_probs=80.2
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC---CCCCCCeEEEEee
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN---KWFTDTSIILFLN 177 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~---~~~~~~piil~~N 177 (262)
.+.+++||++|++.+..+|..++++++++|+|+|+++ ..++.+...|...+... ....++|+++++|
T Consensus 48 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 117 (172)
T cd01862 48 LVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTN----------PKSFESLDSWRDEFLIQASPSDPENFPFVVLGN 117 (172)
T ss_pred EEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCccCCCCceEEEEEE
Confidence 4678899999999999999999999999999999987 56666666665555432 2234799999999
Q ss_pred CCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhc-cceeecccccccceeeeeehh
Q psy6623 178 KKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLF-DSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 178 K~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~-~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+|+..++... .+.+....... .+.++++||++|.|+.++|+.
T Consensus 118 K~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 161 (172)
T cd01862 118 KIDLEEKRQVS-----------------TKKAQQWCQSNGNIPYFETSAKEAINVEQAFET 161 (172)
T ss_pred CcccccccccC-----------------HHHHHHHHHHcCCceEEEEECCCCCCHHHHHHH
Confidence 99997421000 11111111122 367889999999999999964
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-14 Score=116.65 Aligned_cols=121 Identities=10% Similarity=0.039 Sum_probs=79.7
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+++||++|++.++..|..++++++++|+|+|+++ ..++++....|...+... ..++|++|++||+|
T Consensus 47 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~----------~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~D 115 (174)
T cd04135 47 QYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVN----------PASFQNVKEEWVPELKEY-APNVPYLLVGTQID 115 (174)
T ss_pred EEEEEEEeCCCcccccccccccCCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchh
Confidence 3568899999999999999999999999999999998 667766654333333222 46799999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhcc-ceeecccccccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFD-SICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~-~~~~~tsA~d~~~I~~~f~~ 237 (262)
+.........+...-+.. -. .+.......... ..++++||++|.||+++|..
T Consensus 116 l~~~~~~~~~~~~~~~~~---v~--~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~ 168 (174)
T cd04135 116 LRDDPKTLARLNDMKEKP---VT--VEQGQKLAKEIGAHCYVECSALTQKGLKTVFDE 168 (174)
T ss_pred hhcChhhHHHHhhccCCC---CC--HHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHH
Confidence 865322111111110000 00 111111111122 35779999999999999975
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >KOG0395|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-14 Score=119.58 Aligned_cols=131 Identities=16% Similarity=0.129 Sum_probs=103.0
Q ss_pred CCCCCcCccccceeeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccH
Q psy6623 72 AKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRM 151 (262)
Q Consensus 72 ~~~y~pt~~Dil~~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l 151 (262)
.++|.||++|.++... .+.-+...+.|+||+||+.+..+...|.++++|.++|+++++ ..++
T Consensus 29 ~~~y~ptied~y~k~~--------~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd----------~~SF 90 (196)
T KOG0395|consen 29 VEDYDPTIEDSYRKEL--------TVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITD----------RSSF 90 (196)
T ss_pred ccccCCCccccceEEE--------EECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCC----------HHHH
Confidence 3568999987764321 122234678899999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeeccccccccee
Q psy6623 152 QESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSII 231 (262)
Q Consensus 152 ~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I 231 (262)
+++..+++.+...+...++|++|+|||+|+...|...... .........+.+.+|||+...||
T Consensus 91 ~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~ee-----------------g~~la~~~~~~f~E~Sak~~~~v 153 (196)
T KOG0395|consen 91 EEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEE-----------------GKALARSWGCAFIETSAKLNYNV 153 (196)
T ss_pred HHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHH-----------------HHHHHHhcCCcEEEeeccCCcCH
Confidence 9999999999877777889999999999998754332211 11112234566889999999999
Q ss_pred eeeehh
Q psy6623 232 LFLNKK 237 (262)
Q Consensus 232 ~~~f~~ 237 (262)
.++|..
T Consensus 154 ~~~F~~ 159 (196)
T KOG0395|consen 154 DEVFYE 159 (196)
T ss_pred HHHHHH
Confidence 999974
|
|
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.54 E-value=3e-14 Score=114.05 Aligned_cols=123 Identities=11% Similarity=0.128 Sum_probs=87.8
Q ss_pred ecccceeE--EEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.+|+|... ..+.+++ +.+++||++|++.+...+..++++++++|+|+|+++ ..++.....|+..+.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~l~~~~ 99 (164)
T smart00175 30 KSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITN----------RESFENLKNWLKELR 99 (164)
T ss_pred CCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 44555432 3344433 688999999999999999999999999999999998 677777777777665
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.... .++|+++++||+|+...+ ... .+...+......+.++++||++|.||.++|+.
T Consensus 100 ~~~~-~~~pivvv~nK~D~~~~~----~~~-------------~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~ 156 (164)
T smart00175 100 EYAD-PNVVIMLVGNKSDLEDQR----QVS-------------REEAEAFAEEHGLPFFETSAKTNTNVEEAFEE 156 (164)
T ss_pred HhCC-CCCeEEEEEEchhccccc----CCC-------------HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 4432 479999999999975421 000 11111111123466899999999999999963
|
Rab GTPases are implicated in vesicle trafficking. |
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-14 Score=127.15 Aligned_cols=74 Identities=16% Similarity=0.224 Sum_probs=61.8
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC-----------CCC
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW-----------FTD 169 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~-----------~~~ 169 (262)
.+.++||||+||++++.+|..||++++++|+|+|+++ ..++.....|++.+..... ..+
T Consensus 82 ~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITd----------r~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ 151 (334)
T PLN00023 82 DFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQ----------RRTKTSLQKWASEVAATGTFSAPLGSGGPGGLP 151 (334)
T ss_pred eEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhcccccccccccccCCC
Confidence 3679999999999999999999999999999999998 6677777777777765321 236
Q ss_pred CeEEEEeeCCchhhh
Q psy6623 170 TSIILFLNKKDLFEE 184 (262)
Q Consensus 170 ~piil~~NK~Dl~~~ 184 (262)
+|++||+||+||..+
T Consensus 152 ipIILVGNK~DL~~~ 166 (334)
T PLN00023 152 VPYIVIGNKADIAPK 166 (334)
T ss_pred CcEEEEEECcccccc
Confidence 899999999999643
|
|
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.8e-14 Score=114.18 Aligned_cols=111 Identities=12% Similarity=0.168 Sum_probs=78.2
Q ss_pred eccceeeeecCCccc-cchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC-CCCCeEEEEee
Q psy6623 100 KNLNFKLFDVGGQRS-ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW-FTDTSIILFLN 177 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~-~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~-~~~~piil~~N 177 (262)
+.+++++||++|++. ....+..++++++++|+|+|+++ ..++.....|+..+..... ..++|++|++|
T Consensus 45 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~piilv~n 114 (165)
T cd04146 45 EQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITD----------RSSFDEISQLKQLIREIKKRDREIPVILVGN 114 (165)
T ss_pred EEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 456799999999986 35668889999999999999998 6677766666655554322 34799999999
Q ss_pred CCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeeccccccc-ceeeeeehh
Q psy6623 178 KKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDT-SIILFLNKK 237 (262)
Q Consensus 178 K~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~-~~I~~~f~~ 237 (262)
|+|+..++. +. .+-.........+.++++||++| .||.++|..
T Consensus 115 K~Dl~~~~~----v~-------------~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~ 158 (165)
T cd04146 115 KADLLHYRQ----VS-------------TEEGEKLASELGCLFFEVSAAEDYDGVHSVFHE 158 (165)
T ss_pred CCchHHhCc----cC-------------HHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHH
Confidence 999865321 10 01111111113356789999999 599999963
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.3e-14 Score=118.30 Aligned_cols=109 Identities=16% Similarity=0.113 Sum_probs=78.9
Q ss_pred eccceeeeecCCccccchhhhcccc-CCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFE-DVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNK 178 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~-~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK 178 (262)
....+.+||++|++ ......++. +++++|+|+|+++ ..++.....++..+.+.....++|++||+||
T Consensus 48 ~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iilV~d~td----------~~S~~~~~~~~~~l~~~~~~~~~piilV~NK 115 (221)
T cd04148 48 EESTLVVIDHWEQE--MWTEDSCMQYQGDAFVVVYSVTD----------RSSFERASELRIQLRRNRQLEDRPIILVGNK 115 (221)
T ss_pred EEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 45789999999998 333455667 9999999999998 6778877788777766544468999999999
Q ss_pred CchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 179 KDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 179 ~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+|+..++.... +..........+.+++|||+++.||.++|+.
T Consensus 116 ~Dl~~~~~v~~-----------------~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~ 157 (221)
T cd04148 116 SDLARSREVSV-----------------QEGRACAVVFDCKFIETSAGLQHNVDELLEG 157 (221)
T ss_pred hhccccceecH-----------------HHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 99865321110 0111111123466789999999999999963
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-13 Score=112.30 Aligned_cols=122 Identities=16% Similarity=0.228 Sum_probs=77.8
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
+.+.+.+||++|++.++..|..++++++++++|+|+++ .+++......|...+.. ...++|++|++||+
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~----------~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~ 115 (175)
T cd01870 47 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS----------PDSLENIPEKWTPEVKH-FCPNVPIILVGNKK 115 (175)
T ss_pred EEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-hCCCCCEEEEeeCh
Confidence 34678999999999999999999999999999999998 55565554433333322 23578999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
|+.........+... .+... ...+..-+...+ ..+.+++|||++|.||+++|+
T Consensus 116 Dl~~~~~~~~~i~~~-~~~~v-~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~lf~ 168 (175)
T cd01870 116 DLRNDEHTRRELAKM-KQEPV-KPEEGRDMANKI--GAFGYMECSAKTKEGVREVFE 168 (175)
T ss_pred hcccChhhhhhhhhc-cCCCc-cHHHHHHHHHHc--CCcEEEEeccccCcCHHHHHH
Confidence 986421111111100 00000 000011111111 234678999999999999995
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.5e-14 Score=114.08 Aligned_cols=110 Identities=12% Similarity=0.110 Sum_probs=85.5
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
++.+++||++|++.++..|..++.+++++|+|+|+++ ..+++....++..+++.....+.|++|++||+|
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D 117 (180)
T cd04137 48 DYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTS----------RKSFEVVKVIYDKILDMLGKESVPIVLVGNKSD 117 (180)
T ss_pred EEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchh
Confidence 3567899999999999999999999999999999998 678888999999998765556789999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+..++ .+. ...+........+.+..+||+++.||.++|..
T Consensus 118 l~~~~----~~~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 157 (180)
T cd04137 118 LHTQR----QVS-------------TEEGKELAESWGAAFLESSARENENVEEAFEL 157 (180)
T ss_pred hhhcC----ccC-------------HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 86421 000 00111111123467889999999999999964
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.3e-14 Score=112.27 Aligned_cols=114 Identities=11% Similarity=0.078 Sum_probs=79.7
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.++++++||++|++.++..|..++.+++++|+|+|+++ ..++......|...+.... .++|++|++||+
T Consensus 45 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~----------~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~ 113 (166)
T cd01893 45 ERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDR----------PSTLERIRTKWLPLIRRLG-VKVPIILVGNKS 113 (166)
T ss_pred CeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhC-CCCCEEEEEEch
Confidence 45789999999999999999999999999999999998 5666665443333333222 379999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+...+... .+.. ....+.+.+.. ...+.+|||++|.||+++|..
T Consensus 114 Dl~~~~~~~-~~~~-----------~~~~~~~~~~~-~~~~~e~Sa~~~~~v~~lf~~ 158 (166)
T cd01893 114 DLRDGSSQA-GLEE-----------EMLPIMNEFRE-IETCVECSAKTLINVSEVFYY 158 (166)
T ss_pred hcccccchh-HHHH-----------HHHHHHHHHhc-ccEEEEeccccccCHHHHHHH
Confidence 996533211 0000 02233333322 125779999999999999974
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-13 Score=110.10 Aligned_cols=111 Identities=9% Similarity=0.090 Sum_probs=83.8
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
+.+.+.+||++|++.+...+..++++++++++|+|+++ ..++.....++..+.......+.|+++++||+
T Consensus 46 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~ 115 (164)
T cd04139 46 EDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITD----------MESFTATAEFREQILRVKDDDNVPLLLVGNKC 115 (164)
T ss_pred EEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcc
Confidence 45779999999999999999999999999999999987 66777777777777765434579999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+..++... ..-.........+.++++||++|+||.++|..
T Consensus 116 D~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 156 (164)
T cd04139 116 DLEDKRQVS-----------------SEEAANLARQWGVPYVETSAKTRQNVEKAFYD 156 (164)
T ss_pred ccccccccC-----------------HHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHH
Confidence 986521000 11111111123356789999999999999964
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-13 Score=108.29 Aligned_cols=122 Identities=16% Similarity=0.128 Sum_probs=88.7
Q ss_pred ecccceeEEEEee----eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEVHFSF----KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~~~~~----~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.+|.|.......+ ..+.+.+||++|++.++..|..++++++++|+|+|+++ .+++.....|+..+.
T Consensus 30 ~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~ 99 (159)
T cd00154 30 KSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITN----------RESFENLDKWLKELK 99 (159)
T ss_pred CCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 4555654443333 35789999999999999999999999999999999998 566777777777666
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
... ..+.|+++++||+|+...+.. . .+.+.+......+.++++||+++.||.++|+
T Consensus 100 ~~~-~~~~p~ivv~nK~D~~~~~~~---------------~--~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 155 (159)
T cd00154 100 EYA-PENIPIILVGNKIDLEDQRQV---------------S--TEEAQQFAKENGLLFFETSAKTGENVEELFQ 155 (159)
T ss_pred HhC-CCCCcEEEEEEcccccccccc---------------c--HHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence 543 256899999999998621100 0 1222222222457789999999999999985
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.5e-14 Score=113.94 Aligned_cols=122 Identities=16% Similarity=0.141 Sum_probs=83.5
Q ss_pred eccccee--EEEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIV--EVHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~--~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.+|+|.. ...+.+++ +.+.+||++|++.++..+..++..++++|+|+|+++ ..++.....|+..+.
T Consensus 37 ~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~l~ 106 (169)
T cd04114 37 GATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITC----------EESFRCLPEWLREIE 106 (169)
T ss_pred CCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 3555532 23344443 678999999999999999999999999999999987 455554444544432
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.. ...++|+++++||+|+..++ .+. ..+.+.+.. ..+.++.+||++|.|++++|+.
T Consensus 107 ~~-~~~~~~~i~v~NK~D~~~~~----~i~--------------~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 163 (169)
T cd04114 107 QY-ANNKVITILVGNKIDLAERR----EVS--------------QQRAEEFSDAQDMYYLETSAKESDNVEKLFLD 163 (169)
T ss_pred Hh-CCCCCeEEEEEECccccccc----ccC--------------HHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHH
Confidence 21 12468999999999986421 110 111122222 3467889999999999999964
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-13 Score=115.66 Aligned_cols=119 Identities=13% Similarity=0.068 Sum_probs=87.4
Q ss_pred ecccceeEEEEee----eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEVHFSF----KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~~~~~----~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|.......+ +++.+++||++|++.++.+|..|+.+++++|+|+|+++ ..++.....|+..+.
T Consensus 39 ~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~ 108 (215)
T PTZ00132 39 IPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTS----------RITYKNVPNWHRDIV 108 (215)
T ss_pred CCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 4555654443333 46889999999999999999999999999999999998 677777777777665
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
.. ..+.|+++++||+|+....... . ...+. ....+.++++||++|.||+++|.
T Consensus 109 ~~--~~~~~i~lv~nK~Dl~~~~~~~----~-----------~~~~~----~~~~~~~~e~Sa~~~~~v~~~f~ 161 (215)
T PTZ00132 109 RV--CENIPIVLVGNKVDVKDRQVKA----R-----------QITFH----RKKNLQYYDISAKSNYNFEKPFL 161 (215)
T ss_pred Hh--CCCCCEEEEEECccCccccCCH----H-----------HHHHH----HHcCCEEEEEeCCCCCCHHHHHH
Confidence 43 3578999999999985321100 0 01111 12456788999999999999995
|
|
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.43 E-value=5e-13 Score=106.30 Aligned_cols=109 Identities=17% Similarity=0.120 Sum_probs=84.5
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+++||++|++.+...+..++++++++|+|+|+++ ..++.+...++..+.+......+|+++++||+|
T Consensus 46 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 115 (160)
T cd00876 46 TYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITD----------RESFEEIKGYREQILRVKDDEDIPIVLVGNKCD 115 (160)
T ss_pred EEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCc
Confidence 4778999999999999999999999999999999998 677788888888887654435799999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+...+- .. .+.+........+.+..+||+++.||+++|.
T Consensus 116 ~~~~~~----~~-------------~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~ 154 (160)
T cd00876 116 LENERQ----VS-------------KEEGKALAKEWGCPFIETSAKDNINIDEVFK 154 (160)
T ss_pred ccccce----ec-------------HHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Confidence 875210 00 1122222222336688999999999999995
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >KOG0393|consensus | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.4e-13 Score=111.02 Aligned_cols=143 Identities=15% Similarity=0.135 Sum_probs=95.5
Q ss_pred cCCCCCCcCccccceeeecccceeEEEEee---eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCc
Q psy6623 70 LGAKEYQPTEQDILRTRVKTTGIVEVHFSF---KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDE 146 (262)
Q Consensus 70 i~~~~y~pt~~Dil~~~~pT~Gi~~~~~~~---~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~ 146 (262)
.+..+|.||.-|-+.+ .+.+ +.+.+.+|||+||+.|.++|...|.+++.+|.|+++++
T Consensus 28 ~fp~~yvPTVFdnys~----------~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~--------- 88 (198)
T KOG0393|consen 28 AFPEEYVPTVFDNYSA----------NVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVS--------- 88 (198)
T ss_pred cCcccccCeEEccceE----------EEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCC---------
Confidence 4456788887654432 1223 34679999999999999999999999999999999998
Q ss_pred ccccHHHH-HHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcch-hHHHHHHhhhccceeeccc
Q psy6623 147 TTNRMQES-LKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGE-RNRMQESLKLFDSICNNKW 224 (262)
Q Consensus 147 ~~~~l~e~-~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~-~~~i~~~f~~~~~~~~~ts 224 (262)
..++++. .+|+-++..+ ..++|+||+|+|.||..+......+... ...+-..+ ...+.++. ....+.++|
T Consensus 89 -p~S~~nv~~kW~pEi~~~--cp~vpiiLVGtk~DLr~d~~~~~~l~~~---~~~~Vt~~~g~~lA~~i--ga~~y~EcS 160 (198)
T KOG0393|consen 89 -PESFENVKSKWIPEIKHH--CPNVPIILVGTKADLRDDPSTLEKLQRQ---GLEPVTYEQGLELAKEI--GAVKYLECS 160 (198)
T ss_pred -hhhHHHHHhhhhHHHHhh--CCCCCEEEEeehHHhhhCHHHHHHHHhc---cCCcccHHHHHHHHHHh--Ccceeeeeh
Confidence 7888874 4455544432 3689999999999997532111111110 00111111 22222222 235688999
Q ss_pred ccccceeeeeehhhH
Q psy6623 225 FTDTSIILFLNKKDL 239 (262)
Q Consensus 225 A~d~~~I~~~f~~~l 239 (262)
|++..|++++|+..+
T Consensus 161 a~tq~~v~~vF~~a~ 175 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAI 175 (198)
T ss_pred hhhhCCcHHHHHHHH
Confidence 999999999999743
|
|
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.9e-13 Score=109.53 Aligned_cols=112 Identities=16% Similarity=0.124 Sum_probs=74.7
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
+++.+++|||+|++.++..|..++++++++|+|+|+++ .... +.+..+..... .++|+++++||+
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~----------~~~~-~~~~~~~~~~~----~~~~iiiv~NK~ 129 (179)
T cd01890 65 QEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQ----------GVEA-QTLANFYLALE----NNLEIIPVINKI 129 (179)
T ss_pred CcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCC----------CccH-hhHHHHHHHHH----cCCCEEEEEECC
Confidence 45778999999999999999999999999999999986 2221 22233333332 368999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
|+....... . .+.+.+.+.-....++.+||++|+||+++|+ +|...+
T Consensus 130 Dl~~~~~~~--~--------------~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~--~l~~~~ 176 (179)
T cd01890 130 DLPSADPER--V--------------KQQIEDVLGLDPSEAILVSAKTGLGVEDLLE--AIVERI 176 (179)
T ss_pred CCCcCCHHH--H--------------HHHHHHHhCCCcccEEEeeccCCCCHHHHHH--HHHhhC
Confidence 985321000 0 1112221111112378999999999999995 454443
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.7e-13 Score=105.43 Aligned_cols=118 Identities=16% Similarity=0.130 Sum_probs=78.0
Q ss_pred ccceeEEEEeee-ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 89 TTGIVEVHFSFK-NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 89 T~Gi~~~~~~~~-~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
|++.....+.+. +..+++|||+|++.+......++++++++|+|+|+++ ....++...+..+.. .
T Consensus 37 t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~-----------~~~~~~~~~~~~~~~---~ 102 (164)
T cd04171 37 TIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADE-----------GIMPQTREHLEILEL---L 102 (164)
T ss_pred eEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCC-----------CccHhHHHHHHHHHH---h
Confidence 444444555555 7889999999999998888888999999999999875 122233333222211 1
Q ss_pred CCCeEEEEeeCCchhhhh-hccCCCcccCCCCCCCCcchhHHHHHHhhh---ccceeecccccccceeeeeeh
Q psy6623 168 TDTSIILFLNKKDLFEEK-IKKSPLTICFPEYAGKRPGERNRMQESLKL---FDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 168 ~~~piil~~NK~Dl~~~k-l~~~~l~~~fp~~~g~~~~~~~~i~~~f~~---~~~~~~~tsA~d~~~I~~~f~ 236 (262)
...|+++++||+|+..+. .... .+.+.+.+.. ..+.++++||++|+||+++|+
T Consensus 103 ~~~~~ilv~NK~Dl~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 159 (164)
T cd04171 103 GIKRGLVVLTKADLVDEDWLELV----------------EEEIRELLAGTFLADAPIFPVSAVTGEGIEELKE 159 (164)
T ss_pred CCCcEEEEEECccccCHHHHHHH----------------HHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHH
Confidence 224899999999996531 0000 1122222222 346788999999999999985
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-12 Score=104.51 Aligned_cols=121 Identities=15% Similarity=0.157 Sum_probs=80.6
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
..+.+++||++|++.+...+..+++.++++++|+|+++ ..++.+....|...+... ..+.|+++++||+
T Consensus 46 ~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~ 114 (171)
T cd00157 46 KQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDS----------PSSFENVKTKWIPEIRHY-CPNVPIILVGTKI 114 (171)
T ss_pred EEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhh-CCCCCEEEEEccH
Confidence 35679999999999998888899999999999999997 566766665444433322 2379999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~~ 237 (262)
|+....-....+ . .+..........+......+ .++++||++|+||.++|..
T Consensus 115 Dl~~~~~~~~~~-~-----~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 167 (171)
T cd00157 115 DLRDDENTLKKL-E-----KGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEE 167 (171)
T ss_pred Hhhhchhhhhhc-c-----cCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHH
Confidence 997643211111 0 00000001111111112333 7899999999999999953
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-12 Score=110.43 Aligned_cols=124 Identities=15% Similarity=0.066 Sum_probs=85.3
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+++.+|||+||+.++.+|..|+.+++++++|+|.++ ..++.+....|...+......+.|+++++||+|
T Consensus 53 ~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~----------~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~D 122 (219)
T COG1100 53 NIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTL----------RESSDELTEEWLEELRELAPDDVPILLVGNKID 122 (219)
T ss_pred EEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEeccc----------chhhhHHHHHHHHHHHHhCCCCceEEEEecccc
Confidence 5779999999999999999999999999999999997 577777777776666543335799999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcch--hHHHHHHhhhccceeeccccc--ccceeeeeehhh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGE--RNRMQESLKLFDSICNNKWFT--DTSIILFLNKKD 238 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~--~~~i~~~f~~~~~~~~~tsA~--d~~~I~~~f~~~ 238 (262)
++.+......+...+. ...... .......-..... +..+||+ .+.+|..+|...
T Consensus 123 l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~v~~~~~~~ 180 (219)
T COG1100 123 LFDEQSSSEEILNQLN---REVVLLVLAPKAVLPEVANPA-LLETSAKSLTGPNVNELFKEL 180 (219)
T ss_pred cccchhHHHHHHhhhh---cCcchhhhHhHHhhhhhcccc-eeEeecccCCCcCHHHHHHHH
Confidence 9876433222111100 000000 1111111011223 7789999 999999999873
|
|
| >KOG0077|consensus | Back alignment and domain information |
|---|
Probab=99.36 E-value=4e-13 Score=106.22 Aligned_cols=134 Identities=16% Similarity=0.214 Sum_probs=97.5
Q ss_pred EEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEE
Q psy6623 94 EVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSII 173 (262)
Q Consensus 94 ~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pii 173 (262)
.+.+.+++++++.+|.||+..-|+.|..||-.+++++|.+|..| .+|+.|++..++.++....+.++|++
T Consensus 56 SE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d----------~er~~es~~eld~ll~~e~la~vp~l 125 (193)
T KOG0077|consen 56 SEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYD----------QERFAESKKELDALLSDESLATVPFL 125 (193)
T ss_pred hHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhh----------HHHhHHHHHHHHHHHhHHHHhcCcce
Confidence 36678899999999999999999999999999999999999998 89999999999999998888999999
Q ss_pred EEeeCCchhhhhhccCCCccc--CCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhh
Q psy6623 174 LFLNKKDLFEEKIKKSPLTIC--FPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEK 243 (262)
Q Consensus 174 l~~NK~Dl~~~kl~~~~l~~~--fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~ 243 (262)
+++||+|.+... ...+++-. .-.+.|... .-.+.--..|++-.+.+|...+.+--+.| .||.+-
T Consensus 126 ilgnKId~p~a~-se~~l~~~l~l~~~t~~~~---~v~~~~~~~rp~evfmcsi~~~~gy~e~f--kwl~qy 191 (193)
T KOG0077|consen 126 ILGNKIDIPYAA-SEDELRFHLGLSNFTTGKG---KVNLTDSNVRPLEVFMCSIVRKMGYGEGF--KWLSQY 191 (193)
T ss_pred eecccccCCCcc-cHHHHHHHHHHHHHhcccc---cccccCCCCCeEEEEEEEEEccCccceee--eehhhh
Confidence 999999997632 11111100 000000000 00000000166777788888888877777 566654
|
|
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.2e-12 Score=105.53 Aligned_cols=119 Identities=12% Similarity=0.143 Sum_probs=78.1
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHH-HHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLK-LFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~-~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+.+.+||++|++.++..+..++++++++|+|+|+++ ..++.+... |+..+... ..++|++|++||+
T Consensus 48 ~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~----------~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~ 115 (187)
T cd04129 48 PVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDT----------PDSLENVRTKWIEEVRRY--CPNVPVILVGLKK 115 (187)
T ss_pred EEEEEEEECCCChhccccchhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEeeCh
Confidence 3678999999999998888888999999999999987 566766654 44444432 2469999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+..+......... ..+. ...+...+.+.+ ....+++|||++|.||+++|..
T Consensus 116 Dl~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~--~~~~~~e~Sa~~~~~v~~~f~~ 167 (187)
T cd04129 116 DLRQDAVAKEEYRT--QRFV--PIQQGKRVAKEI--GAKKYMECSALTGEGVDDVFEA 167 (187)
T ss_pred hhhhCccccccccc--CCcC--CHHHHHHHHHHh--CCcEEEEccCCCCCCHHHHHHH
Confidence 98543211110000 0000 000011111211 2245789999999999999964
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >KOG4252|consensus | Back alignment and domain information |
|---|
Probab=99.34 E-value=2e-13 Score=109.19 Aligned_cols=135 Identities=12% Similarity=0.176 Sum_probs=98.8
Q ss_pred ccccCCCCCCcCccccceeeecccceeEE--EEe--eeccceeeeecCCccccchhhhccccCCCEEEEeeecccccccc
Q psy6623 67 LDRLGAKEYQPTEQDILRTRVKTTGIVEV--HFS--FKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVL 142 (262)
Q Consensus 67 l~ri~~~~y~pt~~Dil~~~~pT~Gi~~~--~~~--~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~ 142 (262)
|+|++..-|.. .+..|+|+... .+. ..++.+.+||+|||+.+..+...||+|+++.++|++-+|
T Consensus 37 iqryCkgifTk-------dykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTD----- 104 (246)
T KOG4252|consen 37 IQRYCKGIFTK-------DYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTD----- 104 (246)
T ss_pred HHHHhcccccc-------ccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEeccc-----
Confidence 56666544432 22567776532 222 356888999999999999999999999999999999999
Q ss_pred ccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeec
Q psy6623 143 HEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNN 222 (262)
Q Consensus 143 ~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~ 222 (262)
..+++..++|.+.+.+. ...+|.+++-||+||.+....... ..+...+......+-
T Consensus 105 -----r~SFea~~~w~~kv~~e--~~~IPtV~vqNKIDlveds~~~~~-----------------evE~lak~l~~RlyR 160 (246)
T KOG4252|consen 105 -----RYSFEATLEWYNKVQKE--TERIPTVFVQNKIDLVEDSQMDKG-----------------EVEGLAKKLHKRLYR 160 (246)
T ss_pred -----HHHHHHHHHHHHHHHHH--hccCCeEEeeccchhhHhhhcchH-----------------HHHHHHHHhhhhhhh
Confidence 89999999999999864 468999999999999874322211 111111112233556
Q ss_pred ccccccceeeeeehh
Q psy6623 223 KWFTDTSIILFLNKK 237 (262)
Q Consensus 223 tsA~d~~~I~~~f~~ 237 (262)
||++..-||..+|..
T Consensus 161 tSvked~NV~~vF~Y 175 (246)
T KOG4252|consen 161 TSVKEDFNVMHVFAY 175 (246)
T ss_pred hhhhhhhhhHHHHHH
Confidence 999999999999974
|
|
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.6e-12 Score=105.16 Aligned_cols=110 Identities=14% Similarity=0.136 Sum_probs=75.6
Q ss_pred EEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEE
Q psy6623 94 EVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSII 173 (262)
Q Consensus 94 ~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pii 173 (262)
...+..++..+++|||+|++.++..|..++++++++|+|+|+++ ........++..... .++|++
T Consensus 57 ~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~-----------~~~~~~~~~~~~~~~----~~~p~i 121 (194)
T cd01891 57 NTAVTYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASE-----------GPMPQTRFVLKKALE----LGLKPI 121 (194)
T ss_pred eeEEEECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCC-----------CccHHHHHHHHHHHH----cCCCEE
Confidence 34456678899999999999999999999999999999999986 122333333444332 368999
Q ss_pred EEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHh-------hhccceeecccccccceeeee
Q psy6623 174 LFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESL-------KLFDSICNNKWFTDTSIILFL 234 (262)
Q Consensus 174 l~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f-------~~~~~~~~~tsA~d~~~I~~~ 234 (262)
|++||+|+..++.... .+-+.+.+ ....+.+.++||++|.|+.+.
T Consensus 122 iv~NK~Dl~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 122 VVINKIDRPDARPEEV----------------VDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred EEEECCCCCCCCHHHH----------------HHHHHHHHHHhCCccccCccCEEEeehhcccccccc
Confidence 9999999864221100 11111111 112466889999999999665
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >KOG0096|consensus | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.3e-12 Score=104.06 Aligned_cols=131 Identities=15% Similarity=0.131 Sum_probs=100.3
Q ss_pred eeecccceeEEEEee----eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHH
Q psy6623 85 TRVKTTGIVEVHFSF----KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDS 160 (262)
Q Consensus 85 ~~~pT~Gi~~~~~~~----~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~ 160 (262)
.+.+|+|+......+ +.++|..|||+||+.+-.+...||-..++.|+++|++. ...+..+-.|.+.
T Consensus 38 ~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVts----------r~t~~n~~rwhrd 107 (216)
T KOG0096|consen 38 TYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTS----------RFTYKNVPRWHRD 107 (216)
T ss_pred cccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEEeeeee----------hhhhhcchHHHHH
Confidence 346788887666555 34899999999999999999999999999999999998 4455555566666
Q ss_pred HHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHH
Q psy6623 161 ICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 240 (262)
Q Consensus 161 i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL 240 (262)
.+.. ..++||+++|||.|....+....++ .|.+. +.+.+++.||+..-|....| -||
T Consensus 108 ~~rv--~~NiPiv~cGNKvDi~~r~~k~k~v---------------~~~rk----knl~y~~iSaksn~NfekPF--l~L 164 (216)
T KOG0096|consen 108 LVRV--RENIPIVLCGNKVDIKARKVKAKPV---------------SFHRK----KNLQYYEISAKSNYNFERPF--LWL 164 (216)
T ss_pred HHHH--hcCCCeeeeccceeccccccccccc---------------eeeec----ccceeEEeecccccccccch--HHH
Confidence 6543 2469999999999997755343332 12222 56888999999999999999 789
Q ss_pred HhhccCCC
Q psy6623 241 EEKIKKSP 248 (262)
Q Consensus 241 ~~~i~~~~ 248 (262)
..++...+
T Consensus 165 arKl~G~p 172 (216)
T KOG0096|consen 165 ARKLTGDP 172 (216)
T ss_pred hhhhcCCC
Confidence 98887543
|
|
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.8e-12 Score=101.04 Aligned_cols=119 Identities=23% Similarity=0.234 Sum_probs=76.1
Q ss_pred cccceeEEEEeeeccceeeeecCCccccchhhh----------ccccCCCEEEEeeeccccccccccCcccccHHHHHHH
Q psy6623 88 KTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWI----------HCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKL 157 (262)
Q Consensus 88 pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~----------~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~ 157 (262)
+|.++....+..+++++++|||+|+.. +..|. .....++++|+|+|.++.. ..++.+...+
T Consensus 33 ~t~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~--------~~~~~~~~~~ 103 (168)
T cd01897 33 TTKSLFVGHFDYKYLRWQVIDTPGLLD-RPLEERNTIEMQAITALAHLRAAVLFLFDPSETC--------GYSLEEQLSL 103 (168)
T ss_pred cccceeEEEEccCceEEEEEECCCcCC-ccccCCchHHHHHHHHHHhccCcEEEEEeCCccc--------ccchHHHHHH
Confidence 456666666666788999999999842 12221 1112368999999998721 1134555566
Q ss_pred HHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 158 FDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 158 ~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+..+... ..+.|++|++||+|+....- +. ..........+.+++|||++|+||+++|+
T Consensus 104 ~~~l~~~--~~~~pvilv~NK~Dl~~~~~----~~---------------~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (168)
T cd01897 104 FEEIKPL--FKNKPVIVVLNKIDLLTFED----LS---------------EIEEEEELEGEEVLKISTLTEEGVDEVKN 161 (168)
T ss_pred HHHHHhh--cCcCCeEEEEEccccCchhh----HH---------------HHHHhhhhccCceEEEEecccCCHHHHHH
Confidence 6665432 35799999999999964211 00 01111111446788999999999999995
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.1e-12 Score=101.12 Aligned_cols=109 Identities=13% Similarity=-0.030 Sum_probs=72.4
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
+..+.+|||+|++.++..|..+++.++++++|+|.++.+ ..+....+..+.. .++|+++++||+|
T Consensus 49 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~-----------~~~~~~~~~~~~~----~~~p~ivv~NK~D 113 (168)
T cd01887 49 IPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGV-----------MPQTIEAIKLAKA----ANVPFIVALNKID 113 (168)
T ss_pred cceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCc-----------cHHHHHHHHHHHH----cCCCEEEEEEcee
Confidence 678999999999999999999999999999999998721 2223333333322 3689999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHh--hhccceeecccccccceeeeeeh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESL--KLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f--~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+....... +...+ ..+..... ..+.+.++.+||++|+||.++|+
T Consensus 114 l~~~~~~~--~~~~~----------~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (168)
T cd01887 114 KPNANPER--VKNEL----------SELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLE 159 (168)
T ss_pred cccccHHH--HHHHH----------HHhhccccccccCcCcEEEeecccCCCHHHHHH
Confidence 86321000 00000 00000000 01346788999999999999995
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.3e-11 Score=100.34 Aligned_cols=122 Identities=17% Similarity=0.249 Sum_probs=71.5
Q ss_pred ceeeeecCC-----------ccccchhhhcccc-C---CCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 103 NFKLFDVGG-----------QRSERKKWIHCFE-D---VTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 103 ~~~i~D~~G-----------q~~~r~~w~~~f~-~---~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
.+.+|||+| +++++..|..|++ + ++++++|+|.+++.+....-.....+.....++..+..
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 128 (201)
T PRK04213 53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---- 128 (201)
T ss_pred ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH----
Confidence 689999999 7889999988875 3 56888888887643221000000111122233333222
Q ss_pred CCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh----ccc--eeecccccccceeeeeehhhHHH
Q psy6623 168 TDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL----FDS--ICNNKWFTDTSIILFLNKKDLFE 241 (262)
Q Consensus 168 ~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~----~~~--~~~~tsA~d~~~I~~~f~~~lL~ 241 (262)
.++|++|++||+|+..++ . .. ...+.+.+.. +.+ .++.|||++| ||+++| .+|.
T Consensus 129 ~~~p~iiv~NK~Dl~~~~-~-~~---------------~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~--~~l~ 188 (201)
T PRK04213 129 LGIPPIVAVNKMDKIKNR-D-EV---------------LDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELK--EAIR 188 (201)
T ss_pred cCCCeEEEEECccccCcH-H-HH---------------HHHHHHHhcCCccccccCCcEEEEecccC-CHHHHH--HHHH
Confidence 368999999999986432 0 00 1111221111 111 3689999999 999999 4566
Q ss_pred hhccCCC
Q psy6623 242 EKIKKSP 248 (262)
Q Consensus 242 ~~i~~~~ 248 (262)
..+....
T Consensus 189 ~~~~~~~ 195 (201)
T PRK04213 189 KRLHEAK 195 (201)
T ss_pred HhhcCcc
Confidence 6655433
|
|
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.2e-11 Score=102.15 Aligned_cols=74 Identities=22% Similarity=0.429 Sum_probs=62.4
Q ss_pred ccceeeeecCCccccchhhhccccCC-CEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC--CCCCeEEEEee
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDV-TAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW--FTDTSIILFLN 177 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~-~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~--~~~~piil~~N 177 (262)
+..+.+||++|+.++|..|..+++++ +++|||+|.++. .+++.++..++..++.... ..++|++|++|
T Consensus 47 ~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~---------~~~~~~~~~~l~~il~~~~~~~~~~pvliv~N 117 (203)
T cd04105 47 GKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATF---------QKNLKDVAEFLYDILTDLEKVKNKIPVLIACN 117 (203)
T ss_pred CceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccc---------hhHHHHHHHHHHHHHHHHhhccCCCCEEEEec
Confidence 67899999999999999999999998 999999999982 1577787778777765432 25799999999
Q ss_pred CCchhh
Q psy6623 178 KKDLFE 183 (262)
Q Consensus 178 K~Dl~~ 183 (262)
|+|++.
T Consensus 118 K~Dl~~ 123 (203)
T cd04105 118 KQDLFT 123 (203)
T ss_pred chhhcc
Confidence 999875
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.5e-11 Score=97.71 Aligned_cols=119 Identities=14% Similarity=0.074 Sum_probs=80.5
Q ss_pred eEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeE
Q psy6623 93 VEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSI 172 (262)
Q Consensus 93 ~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pi 172 (262)
....+...+..+.+||++|+..++..|..++++++++|+|+|.++. . .......+..... .+.|+
T Consensus 53 ~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~-~~~~~~~~~~~~~----~~~~i 117 (189)
T cd00881 53 GVATFEWPDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEG----------V-QPQTREHLRIARE----GGLPI 117 (189)
T ss_pred ceEEEeeCCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCC----------C-cHHHHHHHHHHHH----CCCCe
Confidence 3444555678899999999999999999999999999999998761 1 1222233333322 46899
Q ss_pred EEEeeCCchhhh-hhccCCCcccCCCCCCCCcchhHHHHHHh--------------hhccceeecccccccceeeeeehh
Q psy6623 173 ILFLNKKDLFEE-KIKKSPLTICFPEYAGKRPGERNRMQESL--------------KLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 173 il~~NK~Dl~~~-kl~~~~l~~~fp~~~g~~~~~~~~i~~~f--------------~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
++++||+|+..+ ..... .+.+.+.+ ......++++||++|.||.++|+
T Consensus 118 ~iv~nK~D~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~- 180 (189)
T cd00881 118 IVAINKIDRVGEEDLEEV----------------LREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLE- 180 (189)
T ss_pred EEEEECCCCcchhcHHHH----------------HHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHH-
Confidence 999999998741 11000 11222211 11346788999999999999994
Q ss_pred hHHHhhc
Q psy6623 238 DLFEEKI 244 (262)
Q Consensus 238 ~lL~~~i 244 (262)
+|...+
T Consensus 181 -~l~~~l 186 (189)
T cd00881 181 -AIVEHL 186 (189)
T ss_pred -HHHhhC
Confidence 555554
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.8e-11 Score=98.67 Aligned_cols=112 Identities=14% Similarity=0.105 Sum_probs=69.9
Q ss_pred Eeeecc-ceeeeecCCcc----ccchhhhccc---cCCCEEEEeeeccccccccccCccc-ccHHHHHHHHHHHHhC-CC
Q psy6623 97 FSFKNL-NFKLFDVGGQR----SERKKWIHCF---EDVTAIIFCVAMSEYDQVLHEDETT-NRMQESLKLFDSICNN-KW 166 (262)
Q Consensus 97 ~~~~~~-~~~i~D~~Gq~----~~r~~w~~~f---~~~~~iIfv~dls~~d~~~~e~~~~-~~l~e~~~~~~~i~~~-~~ 166 (262)
+.+++. .+.+|||+|+. ..+.++..++ ++++++|+|+|+++ . +.+.....+.+.+... +.
T Consensus 42 ~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~----------~~~~~~~~~~~~~~l~~~~~~ 111 (170)
T cd01898 42 VRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSG----------DDDPVEDYKTIRNELELYNPE 111 (170)
T ss_pred EEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCC----------CCCHHHHHHHHHHHHHHhCcc
Confidence 344554 89999999974 2223334443 46999999999997 3 3333333333333322 22
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeeh
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~ 236 (262)
..+.|+++++||+|+...... ...+...... ....++.+||+++.||.++|+
T Consensus 112 ~~~~p~ivv~NK~Dl~~~~~~------------------~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 164 (170)
T cd01898 112 LLEKPRIVVLNKIDLLDEEEL------------------FELLKELLKELWGKPVFPISALTGEGLDELLR 164 (170)
T ss_pred ccccccEEEEEchhcCCchhh------------------HHHHHHHHhhCCCCCEEEEecCCCCCHHHHHH
Confidence 357899999999998542110 1112111222 246678999999999999995
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.1e-11 Score=94.03 Aligned_cols=120 Identities=20% Similarity=0.088 Sum_probs=79.7
Q ss_pred cccceeEEE--Eeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHH-HHHHHHH
Q psy6623 88 KTTGIVEVH--FSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL-KLFDSIC 162 (262)
Q Consensus 88 pT~Gi~~~~--~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~-~~~~~i~ 162 (262)
+|++..... +..++ +.+.+||++|+..++.+|..+++.+.++++++|++.+ ...+.+.. .+...+.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~---------v~~~~~~~~~~~~~~~ 102 (161)
T TIGR00231 32 PGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVIL---------VLDVEEILEKQTKEII 102 (161)
T ss_pred CCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeee---------ehhhhhHhHHHHHHHH
Confidence 444443333 55566 7889999999999999999999999999999999873 13334443 2333332
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeeh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+. ...+.|+++++||+|+....+. ......+.. ....++++||++|.||.++|+
T Consensus 103 ~~-~~~~~p~ivv~nK~D~~~~~~~-------------------~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~ 157 (161)
T TIGR00231 103 HH-AESNVPIILVGNKIDLRDAKLK-------------------THVAFLFAKLNGEPIIPLSAETGKNIDSAFK 157 (161)
T ss_pred Hh-cccCCcEEEEEEcccCCcchhh-------------------HHHHHHHhhccCCceEEeecCCCCCHHHHHH
Confidence 22 1127899999999998653210 011111111 223478999999999999984
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >KOG3883|consensus | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.3e-11 Score=92.01 Aligned_cols=149 Identities=18% Similarity=0.178 Sum_probs=102.2
Q ss_pred CCCCCCcCccccceeeecc-cceeEEEEeeeccceeeeecCCcccc-chhhhccccCCCEEEEeeeccccccccccCccc
Q psy6623 71 GAKEYQPTEQDILRTRVKT-TGIVEVHFSFKNLNFKLFDVGGQRSE-RKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETT 148 (262)
Q Consensus 71 ~~~~y~pt~~Dil~~~~pT-~Gi~~~~~~~~~~~~~i~D~~Gq~~~-r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~ 148 (262)
...++.||++|++.....| .|.. -.+.++||+|-..+ ..+-.|||.-+++.++|+|..++.. .
T Consensus 36 ~~~e~~pTiEDiY~~svet~rgar--------E~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eS-------f 100 (198)
T KOG3883|consen 36 PGTELHPTIEDIYVASVETDRGAR--------EQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPES-------F 100 (198)
T ss_pred CCCccccchhhheeEeeecCCChh--------heEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHH-------H
Confidence 3457899999998765544 2322 35889999998777 6777899999999999999998321 2
Q ss_pred ccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeeccccccc
Q psy6623 149 NRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDT 228 (262)
Q Consensus 149 ~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~ 228 (262)
++++..+++++ .++.-+.+||++++||+|+.+.+-....... .|. ..-.+..++++|+|.
T Consensus 101 ~rv~llKk~Id---k~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~-------------~Wa----~rEkvkl~eVta~dR 160 (198)
T KOG3883|consen 101 QRVELLKKEID---KHKDKKEVPIVVLANKRDRAEPREVDMDVAQ-------------IWA----KREKVKLWEVTAMDR 160 (198)
T ss_pred HHHHHHHHHHh---hccccccccEEEEechhhcccchhcCHHHHH-------------HHH----hhhheeEEEEEeccc
Confidence 33333333333 3555678999999999998543222211111 111 113467788999999
Q ss_pred ceeeeeehhhHHHhhccCCCccccCCCC
Q psy6623 229 SIILFLNKKDLFEEKIKKSPLTICFPEY 256 (262)
Q Consensus 229 ~~I~~~f~~~lL~~~i~~~~l~~~~~~~ 256 (262)
..+.+-| ..|..++....-.+-||-.
T Consensus 161 ~sL~epf--~~l~~rl~~pqskS~Fpl~ 186 (198)
T KOG3883|consen 161 PSLYEPF--TYLASRLHQPQSKSTFPLS 186 (198)
T ss_pred hhhhhHH--HHHHHhccCCcccccCcch
Confidence 9999999 6788888766656667644
|
|
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-10 Score=104.36 Aligned_cols=115 Identities=15% Similarity=0.158 Sum_probs=74.2
Q ss_pred EEee-eccceeeeecCCccc-------cchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC-CC
Q psy6623 96 HFSF-KNLNFKLFDVGGQRS-------ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN-KW 166 (262)
Q Consensus 96 ~~~~-~~~~~~i~D~~Gq~~-------~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~-~~ 166 (262)
.+.+ ++.++.+||++|.-. ....|..+++.++++|+|+|+++ .+++++...|..++... +.
T Consensus 199 ~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~----------~~s~e~~~~~~~EL~~~~~~ 268 (335)
T PRK12299 199 VVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEA----------VDPVEDYKTIRNELEKYSPE 268 (335)
T ss_pred EEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCC----------CCCHHHHHHHHHHHHHhhhh
Confidence 3444 456799999999742 33345556778999999999997 33344444444444332 33
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+.+.|++|++||+|+..+.... ...+........+.++++||++++||+++|+.
T Consensus 269 L~~kp~IIV~NKiDL~~~~~~~-----------------~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~ 322 (335)
T PRK12299 269 LADKPRILVLNKIDLLDEEEER-----------------EKRAALELAALGGPVFLISAVTGEGLDELLRA 322 (335)
T ss_pred cccCCeEEEEECcccCCchhHH-----------------HHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 4578999999999986422100 00111111123366889999999999999953
|
|
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-10 Score=91.98 Aligned_cols=113 Identities=17% Similarity=0.081 Sum_probs=75.7
Q ss_pred ccceeEEEEeeeccceeeeecCCccccch------hhhcccc--CCCEEEEeeeccccccccccCcccccHHHHHHHHHH
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRSERK------KWIHCFE--DVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDS 160 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~------~w~~~f~--~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~ 160 (262)
|+......+.+++..+.+|||+|++.+.. ++..++. +++++|+|+|.++ ... ...++..
T Consensus 30 t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~~---~~~~~~~ 96 (158)
T cd01879 30 TVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATN----------LER---NLYLTLQ 96 (158)
T ss_pred ccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCc----------chh---HHHHHHH
Confidence 44455556677778899999999987764 4677775 9999999999886 222 2233333
Q ss_pred HHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 161 ICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 161 i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+.. .++|+++++||+|+......... ...+... ..+.++++||.++.|+.++|.
T Consensus 97 ~~~----~~~~~iiv~NK~Dl~~~~~~~~~---------------~~~~~~~---~~~~~~~iSa~~~~~~~~l~~ 150 (158)
T cd01879 97 LLE----LGLPVVVALNMIDEAEKRGIKID---------------LDKLSEL---LGVPVVPTSARKGEGIDELKD 150 (158)
T ss_pred HHH----cCCCEEEEEehhhhcccccchhh---------------HHHHHHh---hCCCeEEEEccCCCCHHHHHH
Confidence 332 26899999999998642110000 1111111 235678999999999999985
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.5e-10 Score=89.64 Aligned_cols=110 Identities=18% Similarity=0.158 Sum_probs=78.6
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
+..+.+||++|+..+...|..++++++++|+|+|+++ ...+.....++..........++|+++++||+|
T Consensus 44 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D 113 (157)
T cd00882 44 KVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD----------RESFENVKEWLLLILINKEGENIPIILVGNKID 113 (157)
T ss_pred EEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhhccCCCcEEEEEeccc
Confidence 6789999999999999999999999999999999997 455555555433333334456799999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+....-... ............+.++.+||+++.++.++++
T Consensus 114 ~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 153 (157)
T cd00882 114 LPEERVVSE----------------EELAEQLAKELGVPYFETSAKTGENVEELFE 153 (157)
T ss_pred cccccchHH----------------HHHHHHHHhhcCCcEEEEecCCCCChHHHHH
Confidence 865211100 0001111122457789999999999998885
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.8e-10 Score=93.00 Aligned_cols=120 Identities=18% Similarity=0.183 Sum_probs=89.5
Q ss_pred eeecccceeEEEEeeec-cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh
Q psy6623 85 TRVKTTGIVEVHFSFKN-LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN 163 (262)
Q Consensus 85 ~~~pT~Gi~~~~~~~~~-~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~ 163 (262)
.|..|+++......+.+ ..+.+++|+||++++.+|.-+++++.++|+++|.+. .... ++...+.-+..
T Consensus 50 kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~----------~~~~-~a~~ii~f~~~ 118 (187)
T COG2229 50 KRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSR----------PITF-HAEEIIDFLTS 118 (187)
T ss_pred ccceeEeecccceEEcCcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCC----------Ccch-HHHHHHHHHhh
Confidence 34678888888888866 899999999999999999999999999999999997 4444 55555444432
Q ss_pred CCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh--ccceeecccccccceeeeeehh
Q psy6623 164 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL--FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 164 ~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~--~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.. .+|++|+.||+||+... .. +-|++.+.. ..+....++|+++++..+..+.
T Consensus 119 ~~---~ip~vVa~NK~DL~~a~-pp------------------e~i~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ 172 (187)
T COG2229 119 RN---PIPVVVAINKQDLFDAL-PP------------------EKIREALKLELLSVPVIEIDATEGEGARDQLDV 172 (187)
T ss_pred cc---CCCEEEEeeccccCCCC-CH------------------HHHHHHHHhccCCCceeeeecccchhHHHHHHH
Confidence 21 29999999999998732 11 112222211 3577889999999999888864
|
|
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.12 E-value=2e-10 Score=95.94 Aligned_cols=115 Identities=16% Similarity=0.086 Sum_probs=71.0
Q ss_pred cccceeEEEEeeec-cceeeeecCCccc---------cchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHH
Q psy6623 88 KTTGIVEVHFSFKN-LNFKLFDVGGQRS---------ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKL 157 (262)
Q Consensus 88 pT~Gi~~~~~~~~~-~~~~i~D~~Gq~~---------~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~ 157 (262)
+|+......+.+.+ ..+.+||++|+.. ++..+ ..+.+++++++|+|+++ ....... ..
T Consensus 74 ~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~----------~~~~~~~-~~ 141 (204)
T cd01878 74 ATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASD----------PDYEEQI-ET 141 (204)
T ss_pred eeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCC----------CChhhHH-HH
Confidence 34444444445544 3899999999832 23333 24678999999999987 3333222 22
Q ss_pred HHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 158 FDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 158 ~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+..++..-...+.|+++|+||+|+..+.... ..+......++++||+++.||.++|+
T Consensus 142 ~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~----------------------~~~~~~~~~~~~~Sa~~~~gi~~l~~ 198 (204)
T cd01878 142 VEKVLKELGAEDIPMILVLNKIDLLDDEELE----------------------ERLEAGRPDAVFISAKTGEGLDELLE 198 (204)
T ss_pred HHHHHHHcCcCCCCEEEEEEccccCChHHHH----------------------HHhhcCCCceEEEEcCCCCCHHHHHH
Confidence 2222222223468999999999986532111 01111234578999999999999995
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.2e-10 Score=109.20 Aligned_cols=110 Identities=15% Similarity=0.098 Sum_probs=73.2
Q ss_pred cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCch
Q psy6623 102 LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl 181 (262)
+.+++|||+|+..++..|..++++++++|+|+|.++ .... +....+..... .+.|+++++||+|+
T Consensus 70 ~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~----------g~~~-qt~~~~~~~~~----~~ipiIiViNKiDl 134 (595)
T TIGR01393 70 YVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQ----------GIEA-QTLANVYLALE----NDLEIIPVINKIDL 134 (595)
T ss_pred EEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCC----------CCCH-hHHHHHHHHHH----cCCCEEEEEECcCC
Confidence 789999999999999999999999999999999987 2222 22223333332 35799999999998
Q ss_pred hhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 182 FEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 182 ~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
....... . .+-+.+.+.-....++++||++|.||.++|+ .+...+
T Consensus 135 ~~~~~~~--~--------------~~el~~~lg~~~~~vi~vSAktG~GI~~Lle--~I~~~l 179 (595)
T TIGR01393 135 PSADPER--V--------------KKEIEEVIGLDASEAILASAKTGIGIEEILE--AIVKRV 179 (595)
T ss_pred CccCHHH--H--------------HHHHHHHhCCCcceEEEeeccCCCCHHHHHH--HHHHhC
Confidence 5321000 0 1112221111112367899999999999995 344444
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.5e-10 Score=92.31 Aligned_cols=120 Identities=16% Similarity=0.075 Sum_probs=74.0
Q ss_pred EEEeee-ccceeeeecCCcc----ccchhh---hccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 95 VHFSFK-NLNFKLFDVGGQR----SERKKW---IHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 95 ~~~~~~-~~~~~i~D~~Gq~----~~r~~w---~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
..+.++ +..+.+||++|+. ..+.++ ..++++++++++|+|.++.+.. ...+.+.+...+...+.....
T Consensus 36 ~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 111 (176)
T cd01881 36 GVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDI----GGVDPLEDYEILNAELKLYDL 111 (176)
T ss_pred eEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccc----cccCHHHHHHHHHHHHHHhhh
Confidence 345566 7889999999973 223333 3457889999999999872100 000344444445445543221
Q ss_pred ------CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHH-HHHHhhhccceeecccccccceeeeeeh
Q psy6623 167 ------FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNR-MQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 167 ------~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~-i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
..+.|+++++||+|+....... .. ...........++.+||+++.|+.++++
T Consensus 112 ~~~~~~~~~~p~ivv~NK~Dl~~~~~~~------------------~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~ 170 (176)
T cd01881 112 ETILGLLTAKPVIYVLNKIDLDDAEELE------------------EELVRELALEEGAEVVPISAKTEEGLDELIR 170 (176)
T ss_pred hhHHHHHhhCCeEEEEEchhcCchhHHH------------------HHHHHHHhcCCCCCEEEEehhhhcCHHHHHH
Confidence 2478999999999986432110 00 0111112345688999999999999986
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.3e-10 Score=96.95 Aligned_cols=128 Identities=13% Similarity=0.034 Sum_probs=77.8
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.-|+......+..++.++.+||++|++.+...+....+.++++|+|+|.++-.. +. ......+....+... . .
T Consensus 62 g~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~---~~-~~~~~~~~~~~~~~~-~--~ 134 (219)
T cd01883 62 GVTIDVGLAKFETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEF---EA-GFEKGGQTREHALLA-R--T 134 (219)
T ss_pred ccCeecceEEEeeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCcc---cc-ccccccchHHHHHHH-H--H
Confidence 445555666778889999999999999888888888889999999999986210 00 001111222222222 1 2
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-----ccceeecccccccceee
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-----FDSICNNKWFTDTSIIL 232 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-----~~~~~~~tsA~d~~~I~ 232 (262)
....|+++++||+|+.........+.. ..+.+...+.. +.+.++++||++|+||.
T Consensus 135 ~~~~~iiivvNK~Dl~~~~~~~~~~~~-----------i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 135 LGVKQLIVAVNKMDDVTVNWSEERYDE-----------IKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cCCCeEEEEEEccccccccccHHHHHH-----------HHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 234689999999999731000000000 01122211211 35779999999999998
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.9e-10 Score=96.42 Aligned_cols=114 Identities=14% Similarity=0.077 Sum_probs=74.1
Q ss_pred cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCch
Q psy6623 102 LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl 181 (262)
..+.+|||+|++.+...+.....+++++|+|+|+++ .....+....+..+.. ....|++|++||+|+
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~----------~~~~~~t~~~l~~~~~---~~~~~iiivvNK~Dl 149 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANE----------PCPQPQTSEHLAALEI---MGLKHIIIVQNKIDL 149 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCC----------CCCCcchHHHHHHHHH---cCCCcEEEEEEchhc
Confidence 578999999999998888888899999999999985 1111122222222211 123579999999998
Q ss_pred hhhh-hccCCCcccCCCCCCCCcchhHHHHHHhhh---ccceeecccccccceeeeeehhhHHHhhccC
Q psy6623 182 FEEK-IKKSPLTICFPEYAGKRPGERNRMQESLKL---FDSICNNKWFTDTSIILFLNKKDLFEEKIKK 246 (262)
Q Consensus 182 ~~~k-l~~~~l~~~fp~~~g~~~~~~~~i~~~f~~---~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~~ 246 (262)
..+. .... .+.+.+.+.. ..+.++++||++|+||.++| .++...+..
T Consensus 150 ~~~~~~~~~----------------~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~--~~l~~~l~~ 200 (203)
T cd01888 150 VKEEQALEN----------------YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLL--EYIVKKIPT 200 (203)
T ss_pred cCHHHHHHH----------------HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHH--HHHHHhCCC
Confidence 6421 1000 1222222221 24567889999999999999 456665544
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.4e-10 Score=93.78 Aligned_cols=117 Identities=20% Similarity=0.162 Sum_probs=66.9
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
+..+.+|||+|+..+.+......+.++++|+|+|.++. ..... .+.+. +... .+.|+++++||+|
T Consensus 67 ~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~----------~~~~~-~~~~~-~~~~---~~~~~iiv~NK~D 131 (192)
T cd01889 67 NLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKG----------IQTQT-AECLV-IGEI---LCKKLIVVLNKID 131 (192)
T ss_pred CceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC----------ccHHH-HHHHH-HHHH---cCCCEEEEEECcc
Confidence 67899999999965422222223567899999998861 11111 11111 1111 2579999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhh---hccceeecccccccceeeeeehhhHHHhhcc
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLK---LFDSICNNKWFTDTSIILFLNKKDLFEEKIK 245 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~---~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~ 245 (262)
+..+......+... .+.+...+. ...+.++.+||++|+||.++++ .|..++.
T Consensus 132 l~~~~~~~~~~~~~-----------~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~--~l~~~~~ 186 (192)
T cd01889 132 LIPEEERERKIEKM-----------KKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGK--DLNNLIV 186 (192)
T ss_pred cCCHHHHHHHHHHH-----------HHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHH--HHHhccc
Confidence 86321000000000 122222221 1346688999999999999884 4655554
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >KOG1673|consensus | Back alignment and domain information |
|---|
Probab=99.05 E-value=2e-10 Score=90.03 Aligned_cols=128 Identities=16% Similarity=0.182 Sum_probs=88.8
Q ss_pred eeecccceeEEEE--eee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHH
Q psy6623 85 TRVKTTGIVEVHF--SFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDS 160 (262)
Q Consensus 85 ~~~pT~Gi~~~~~--~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~ 160 (262)
.+..|.|++.... .++ .+.+.+||+|||++++.+.+.-..++-+|+|++|++. ...+...++|+++
T Consensus 48 ~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~----------r~TLnSi~~WY~Q 117 (205)
T KOG1673|consen 48 EYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTR----------RSTLNSIKEWYRQ 117 (205)
T ss_pred HHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCc----------hHHHHHHHHHHHH
Confidence 4567888876544 444 4789999999999999999998999999999999998 6777888888887
Q ss_pred HHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcch-hHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 161 ICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGE-RNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 161 i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~-~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
...- .+.+--+++|+|.|++-. +... +.-.-... +.|.+. -.-..+++||....||+.+|+.
T Consensus 118 Ar~~--NktAiPilvGTKyD~fi~-lp~e--------~Q~~I~~qar~YAk~----mnAsL~F~Sts~sINv~KIFK~ 180 (205)
T KOG1673|consen 118 ARGL--NKTAIPILVGTKYDLFID-LPPE--------LQETISRQARKYAKV----MNASLFFCSTSHSINVQKIFKI 180 (205)
T ss_pred Hhcc--CCccceEEeccchHhhhc-CCHH--------HHHHHHHHHHHHHHH----hCCcEEEeeccccccHHHHHHH
Confidence 7532 233334678999999752 1110 00000000 222221 2345778999999999999975
|
|
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=7e-10 Score=100.11 Aligned_cols=129 Identities=16% Similarity=0.165 Sum_probs=76.6
Q ss_pred cccceeEEEEeeeccceeeeecCCccc-cchhh-------hccccCCCEEEEeeeccccccccccCcccccHHHHH-HHH
Q psy6623 88 KTTGIVEVHFSFKNLNFKLFDVGGQRS-ERKKW-------IHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL-KLF 158 (262)
Q Consensus 88 pT~Gi~~~~~~~~~~~~~i~D~~Gq~~-~r~~w-------~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~-~~~ 158 (262)
+|.+.....+..++.++.+|||+|+.. +..+- ..++++++++|||+|.++ ++.+.. .++
T Consensus 86 tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~------------s~~~~~~~il 153 (339)
T PRK15494 86 TTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK------------SFDDITHNIL 153 (339)
T ss_pred CccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC------------CCCHHHHHHH
Confidence 444544455666788899999999843 22211 124789999999999664 122221 233
Q ss_pred HHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhh
Q psy6623 159 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 238 (262)
Q Consensus 159 ~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~ 238 (262)
..+.. .+.|.+||+||+|+..+.+ .++ .+++.... ....++++||++|.||+++| .
T Consensus 154 ~~l~~----~~~p~IlViNKiDl~~~~~--~~~--------------~~~l~~~~--~~~~i~~iSAktg~gv~eL~--~ 209 (339)
T PRK15494 154 DKLRS----LNIVPIFLLNKIDIESKYL--NDI--------------KAFLTENH--PDSLLFPISALSGKNIDGLL--E 209 (339)
T ss_pred HHHHh----cCCCEEEEEEhhcCccccH--HHH--------------HHHHHhcC--CCcEEEEEeccCccCHHHHH--H
Confidence 33322 1356778999999854210 000 12222110 12457899999999999999 5
Q ss_pred HHHhhccCCCccccCC
Q psy6623 239 LFEEKIKKSPLTICFP 254 (262)
Q Consensus 239 lL~~~i~~~~l~~~~~ 254 (262)
+|...+..+ +-+||
T Consensus 210 ~L~~~l~~~--~~~~~ 223 (339)
T PRK15494 210 YITSKAKIS--PWLYA 223 (339)
T ss_pred HHHHhCCCC--CCCCC
Confidence 677766544 33444
|
|
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.7e-10 Score=102.27 Aligned_cols=114 Identities=16% Similarity=0.116 Sum_probs=72.9
Q ss_pred cccceeEEEEee-eccceeeeecCCc---------cccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHH
Q psy6623 88 KTTGIVEVHFSF-KNLNFKLFDVGGQ---------RSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKL 157 (262)
Q Consensus 88 pT~Gi~~~~~~~-~~~~~~i~D~~Gq---------~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~ 157 (262)
+|.......+.+ ++..+.+|||+|. +.+++.+. ++.+++++|+|+|.++ .....+ ...
T Consensus 222 tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle-~~~~ADlil~VvD~s~----------~~~~~~-~~~ 289 (351)
T TIGR03156 222 ATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLE-EVREADLLLHVVDASD----------PDREEQ-IEA 289 (351)
T ss_pred cccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHH-HHHhCCEEEEEEECCC----------CchHHH-HHH
Confidence 455555666666 5689999999998 33444433 5789999999999997 333222 222
Q ss_pred HHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 158 FDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 158 ~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+..++..-...+.|+++|+||+|+.... . ...+.. ....++.+||++|.||+++++
T Consensus 290 ~~~~L~~l~~~~~piIlV~NK~Dl~~~~----~---------------v~~~~~----~~~~~i~iSAktg~GI~eL~~ 345 (351)
T TIGR03156 290 VEKVLEELGAEDIPQLLVYNKIDLLDEP----R---------------IERLEE----GYPEAVFVSAKTGEGLDLLLE 345 (351)
T ss_pred HHHHHHHhccCCCCEEEEEEeecCCChH----h---------------HHHHHh----CCCCEEEEEccCCCCHHHHHH
Confidence 2233322223468999999999986421 0 000100 112357899999999999885
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-09 Score=105.08 Aligned_cols=111 Identities=15% Similarity=0.110 Sum_probs=75.4
Q ss_pred EEEeeecc-ceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEE
Q psy6623 95 VHFSFKNL-NFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSII 173 (262)
Q Consensus 95 ~~~~~~~~-~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pii 173 (262)
..+.+++. .+.+|||+|++.|..+|..+++.++++|+|+|.++ ....++.+.+.... ..++|++
T Consensus 127 ~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~d-----------gv~~qT~e~i~~~~----~~~vPiI 191 (587)
T TIGR00487 127 YHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADD-----------GVMPQTIEAISHAK----AANVPII 191 (587)
T ss_pred EEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCC-----------CCCHhHHHHHHHHH----HcCCCEE
Confidence 34455443 89999999999999999999999999999999875 22334444443322 2468999
Q ss_pred EEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHH------HHhhhccceeecccccccceeeeeehh
Q psy6623 174 LFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQ------ESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 174 l~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~------~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+++||+|+...... .+ ...+. ..+. ..+.+.++||++|+||.++|+.
T Consensus 192 VviNKiDl~~~~~e--~v--------------~~~L~~~g~~~~~~~-~~~~~v~iSAktGeGI~eLl~~ 244 (587)
T TIGR00487 192 VAINKIDKPEANPD--RV--------------KQELSEYGLVPEDWG-GDTIFVPVSALTGDGIDELLDM 244 (587)
T ss_pred EEEECcccccCCHH--HH--------------HHHHHHhhhhHHhcC-CCceEEEEECCCCCChHHHHHh
Confidence 99999998531100 00 11111 1110 2345788999999999999975
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-09 Score=105.56 Aligned_cols=111 Identities=16% Similarity=0.097 Sum_probs=74.0
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
++.+++|||+|+..+...|..+++.++++|+|+|.++- .. .+....+..... .+.|+++|+||+|
T Consensus 73 ~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~g----------v~-~qt~~~~~~~~~----~~lpiIvViNKiD 137 (600)
T PRK05433 73 TYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG----------VE-AQTLANVYLALE----NDLEIIPVLNKID 137 (600)
T ss_pred cEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCC----------CC-HHHHHHHHHHHH----CCCCEEEEEECCC
Confidence 57899999999999999999999999999999999861 11 122233333332 3679999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
+....... . .+-+.+.+.-....++.+||++|.||.++++ ++...+
T Consensus 138 l~~a~~~~--v--------------~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~--~I~~~l 183 (600)
T PRK05433 138 LPAADPER--V--------------KQEIEDVIGIDASDAVLVSAKTGIGIEEVLE--AIVERI 183 (600)
T ss_pred CCcccHHH--H--------------HHHHHHHhCCCcceEEEEecCCCCCHHHHHH--HHHHhC
Confidence 85421100 0 1112221111112367899999999999995 344443
|
|
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-09 Score=97.79 Aligned_cols=121 Identities=14% Similarity=0.191 Sum_probs=74.3
Q ss_pred ecccceeEEEEeeec-cceeeeecCCccc-------cchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHH
Q psy6623 87 VKTTGIVEVHFSFKN-LNFKLFDVGGQRS-------ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLF 158 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~-~~~~i~D~~Gq~~-------~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~ 158 (262)
.|++|+ +.+.+ ..+.+||++|+.. ....|..+++.++++|+|+|+++.+. .+.+++...+.
T Consensus 193 ~p~ig~----v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~-------~~~~e~l~~l~ 261 (329)
T TIGR02729 193 VPNLGV----VRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDG-------RDPIEDYEIIR 261 (329)
T ss_pred CCEEEE----EEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccc-------cCHHHHHHHHH
Confidence 455554 34444 7899999999842 23344455678999999999997310 12333333333
Q ss_pred HHHHh-CCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 159 DSICN-NKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 159 ~~i~~-~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+++.. .+.+.+.|++|++||+|+..+... ..+ .+.+.+. ..+.++++||++++||+++++
T Consensus 262 ~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~-~~~--------------~~~l~~~---~~~~vi~iSAktg~GI~eL~~ 322 (329)
T TIGR02729 262 NELKKYSPELAEKPRIVVLNKIDLLDEEEL-AEL--------------LKELKKA---LGKPVFPISALTGEGLDELLY 322 (329)
T ss_pred HHHHHhhhhhccCCEEEEEeCccCCChHHH-HHH--------------HHHHHHH---cCCcEEEEEccCCcCHHHHHH
Confidence 33322 133457899999999998653210 000 1122211 235678899999999999995
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-09 Score=103.17 Aligned_cols=108 Identities=13% Similarity=0.068 Sum_probs=69.7
Q ss_pred EEEEeeeccceeeeecCCccc--------cchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 94 EVHFSFKNLNFKLFDVGGQRS--------ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 94 ~~~~~~~~~~~~i~D~~Gq~~--------~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
.....+++..+.+|||+|++. ++..+..++++++++|||+|.++ ..+..+ ..+. ..+..
T Consensus 78 ~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~----------~~s~~~-~~i~-~~l~~- 144 (472)
T PRK03003 78 SYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATV----------GATATD-EAVA-RVLRR- 144 (472)
T ss_pred EEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCC----------CCCHHH-HHHH-HHHHH-
Confidence 344556778899999999873 45567788999999999999987 211111 1222 22221
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.++|++||+||+|+.... ... ..+....+ . ..+++||++|.||.++|+.
T Consensus 145 --~~~piilV~NK~Dl~~~~---~~~--------------~~~~~~g~---~-~~~~iSA~~g~gi~eL~~~ 193 (472)
T PRK03003 145 --SGKPVILAANKVDDERGE---ADA--------------AALWSLGL---G-EPHPVSALHGRGVGDLLDA 193 (472)
T ss_pred --cCCCEEEEEECccCCccc---hhh--------------HHHHhcCC---C-CeEEEEcCCCCCcHHHHHH
Confidence 368999999999985311 000 01111001 1 1357999999999999953
|
|
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.7e-09 Score=85.46 Aligned_cols=107 Identities=17% Similarity=0.110 Sum_probs=69.2
Q ss_pred eEEEEeeeccceeeeecCCccccch--------hhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 93 VEVHFSFKNLNFKLFDVGGQRSERK--------KWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 93 ~~~~~~~~~~~~~i~D~~Gq~~~r~--------~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
........+..+.+|||+|+..++. .+..++++++++|+|+|.++. ....+ ...++ .+..
T Consensus 36 ~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~~~~~-~~~~~-~~~~ 103 (157)
T cd01894 36 IYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREG----------LTPAD-EEIAK-YLRK 103 (157)
T ss_pred eeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEecccc----------CCccH-HHHHH-HHHh
Confidence 3444555678899999999988654 445678899999999998751 11111 12222 2221
Q ss_pred CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeeh
Q psy6623 165 KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~ 236 (262)
.+.|+++++||+|+...... ...+..... .+.++||+++.||.++|+
T Consensus 104 ---~~~piiiv~nK~D~~~~~~~----------------------~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 151 (157)
T cd01894 104 ---SKKPVILVVNKVDNIKEEDE----------------------AAEFYSLGFGEPIPISAEHGRGIGDLLD 151 (157)
T ss_pred ---cCCCEEEEEECcccCChHHH----------------------HHHHHhcCCCCeEEEecccCCCHHHHHH
Confidence 24899999999998653211 001111112 357899999999999995
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.6e-11 Score=92.18 Aligned_cols=95 Identities=14% Similarity=0.068 Sum_probs=59.0
Q ss_pred eeeecCCcc-----ccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 105 KLFDVGGQR-----SERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 105 ~i~D~~Gq~-----~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+|||+|+. .++.+.. .+++++++|+|+|+++- .++.. ..+ .... ..|+++++||+
T Consensus 38 ~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~----------~s~~~-~~~-~~~~------~~p~ilv~NK~ 98 (142)
T TIGR02528 38 GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDP----------ESRFP-PGF-ASIF------VKPVIGLVTKI 98 (142)
T ss_pred eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCC----------CcCCC-hhH-HHhc------cCCeEEEEEee
Confidence 689999983 3444433 57999999999999983 22221 122 2221 23999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeeh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~ 236 (262)
|+..... .... ..++... ... .++++||++|+||+++|+
T Consensus 99 Dl~~~~~---~~~~-----------~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 99 DLAEADV---DIER-----------AKELLET----AGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred ccCCccc---CHHH-----------HHHHHHH----cCCCcEEEEecCCCCCHHHHHH
Confidence 9853110 0000 0122221 222 567899999999999985
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-09 Score=101.13 Aligned_cols=114 Identities=14% Similarity=0.204 Sum_probs=74.3
Q ss_pred EEEeeeccceeeeecCCccccchhh-----------hccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh
Q psy6623 95 VHFSFKNLNFKLFDVGGQRSERKKW-----------IHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN 163 (262)
Q Consensus 95 ~~~~~~~~~~~i~D~~Gq~~~r~~w-----------~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~ 163 (262)
..+..++..+.+|||+|+++.+..+ ..+++.++++|+|+|.++ .-. .....++..+..
T Consensus 213 ~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~----------~~~-~~~~~~~~~~~~ 281 (429)
T TIGR03594 213 IPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATE----------GIT-EQDLRIAGLILE 281 (429)
T ss_pred EEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCC----------Ccc-HHHHHHHHHHHH
Confidence 3455567789999999987766543 346789999999999986 222 223344444433
Q ss_pred CCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehh
Q psy6623 164 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 164 ~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+.|+++++||+|+.........+ .+.+...+.. ..+.++++||++|.||.++|+.
T Consensus 282 ----~~~~iiiv~NK~Dl~~~~~~~~~~--------------~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~ 338 (429)
T TIGR03594 282 ----AGKALVIVVNKWDLVKDEKTREEF--------------KKELRRKLPFLDFAPIVFISALTGQGVDKLLDA 338 (429)
T ss_pred ----cCCcEEEEEECcccCCCHHHHHHH--------------HHHHHHhcccCCCCceEEEeCCCCCCHHHHHHH
Confidence 368999999999986211000000 2223222222 2356889999999999999975
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.3e-10 Score=84.56 Aligned_cols=78 Identities=21% Similarity=0.306 Sum_probs=57.4
Q ss_pred ceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHH---HHHHHhCCCC
Q psy6623 91 GIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKL---FDSICNNKWF 167 (262)
Q Consensus 91 Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~---~~~i~~~~~~ 167 (262)
+............+.+||++|++.+...|...+.+++++|+|+|+++ ..+++.+..+ +..+-. ..
T Consensus 39 ~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~----------~~s~~~~~~~~~~l~~~~~--~~ 106 (119)
T PF08477_consen 39 GVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSD----------PESLEYLSQLLKWLKNIRK--RD 106 (119)
T ss_dssp EEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCG----------HHHHHHHHHHHHHHHHHHH--HS
T ss_pred EEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEEEcCCC----------hHHHHHHHHHHHHHHHHHc--cC
Confidence 33333333344559999999999999988888999999999999998 5666665444 444432 23
Q ss_pred CCCeEEEEeeCCc
Q psy6623 168 TDTSIILFLNKKD 180 (262)
Q Consensus 168 ~~~piil~~NK~D 180 (262)
.++|++|++||.|
T Consensus 107 ~~~piilv~nK~D 119 (119)
T PF08477_consen 107 KNIPIILVGNKSD 119 (119)
T ss_dssp SCSEEEEEEE-TC
T ss_pred CCCCEEEEEeccC
Confidence 5699999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.1e-09 Score=107.94 Aligned_cols=113 Identities=17% Similarity=0.105 Sum_probs=77.7
Q ss_pred EEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6623 95 VHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIIL 174 (262)
Q Consensus 95 ~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil 174 (262)
..+.+++..++||||+|++.|..+|..+++.+|++|+|+|.++ ....++...+.... ..++|++|
T Consensus 330 ~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAdd-----------Gv~~qT~e~i~~a~----~~~vPiIV 394 (787)
T PRK05306 330 YQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADD-----------GVMPQTIEAINHAK----AAGVPIIV 394 (787)
T ss_pred EEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCC-----------CCCHhHHHHHHHHH----hcCCcEEE
Confidence 3455667889999999999999999999999999999999876 23344444443322 24689999
Q ss_pred EeeCCchhhhhhc--cCCCc--ccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 175 FLNKKDLFEEKIK--KSPLT--ICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 175 ~~NK~Dl~~~kl~--~~~l~--~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
++||+|+...... ...+. ..+|+-.| ..+.++++||++|.||.++|+.
T Consensus 395 viNKiDl~~a~~e~V~~eL~~~~~~~e~~g---------------~~vp~vpvSAktG~GI~eLle~ 446 (787)
T PRK05306 395 AINKIDKPGANPDRVKQELSEYGLVPEEWG---------------GDTIFVPVSAKTGEGIDELLEA 446 (787)
T ss_pred EEECccccccCHHHHHHHHHHhcccHHHhC---------------CCceEEEEeCCCCCCchHHHHh
Confidence 9999998642100 00010 01111001 2366889999999999999975
|
|
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.4e-09 Score=103.03 Aligned_cols=120 Identities=17% Similarity=0.135 Sum_probs=79.5
Q ss_pred ccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCC
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFT 168 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~ 168 (262)
|+.+....+..++..+.+||++|++.+.+.+..++.+++++|+|+|.++ ..+.++.+.+.. +.. .
T Consensus 37 Tid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~-----------G~~~qT~ehl~i-l~~---l 101 (581)
T TIGR00475 37 TIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADE-----------GVMTQTGEHLAV-LDL---L 101 (581)
T ss_pred eEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCC-----------CCcHHHHHHHHH-HHH---c
Confidence 4444455567777889999999999999999999999999999999986 122233333322 221 2
Q ss_pred CCe-EEEEeeCCchhhhh-hcc--CCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 169 DTS-IILFLNKKDLFEEK-IKK--SPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 169 ~~p-iil~~NK~Dl~~~k-l~~--~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
++| ++|++||+|+.++. +.. ..+ .+++........+.++++||++|+||.+++..
T Consensus 102 gi~~iIVVlNK~Dlv~~~~~~~~~~ei--------------~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~ 160 (581)
T TIGR00475 102 GIPHTIVVITKADRVNEEEIKRTEMFM--------------KQILNSYIFLKNAKIFKTSAKTGQGIGELKKE 160 (581)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHH--------------HHHHHHhCCCCCCcEEEEeCCCCCCchhHHHH
Confidence 466 99999999986422 100 000 11111110011466889999999999999864
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.3e-09 Score=100.95 Aligned_cols=113 Identities=15% Similarity=0.127 Sum_probs=71.8
Q ss_pred EEEeeeccceeeeecCCccc----------cchhh-hccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh
Q psy6623 95 VHFSFKNLNFKLFDVGGQRS----------ERKKW-IHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN 163 (262)
Q Consensus 95 ~~~~~~~~~~~i~D~~Gq~~----------~r~~w-~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~ 163 (262)
..+.+++..+.+|||+|+++ ++.+. ..++++++++|+|+|.++ ..+.. .+.++..+..
T Consensus 252 ~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~----------~~s~~-~~~~~~~~~~ 320 (472)
T PRK03003 252 SLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASE----------PISEQ-DQRVLSMVIE 320 (472)
T ss_pred EEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCC----------CCCHH-HHHHHHHHHH
Confidence 44566777889999999643 22222 236789999999999987 33333 2345555543
Q ss_pred CCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehh
Q psy6623 164 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 164 ~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+.|++|++||+|+..+.... .+ ...+...+.. ....+++|||++|.||.++|..
T Consensus 321 ----~~~piIiV~NK~Dl~~~~~~~-~~--------------~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~ 376 (472)
T PRK03003 321 ----AGRALVLAFNKWDLVDEDRRY-YL--------------EREIDRELAQVPWAPRVNISAKTGRAVDKLVPA 376 (472)
T ss_pred ----cCCCEEEEEECcccCChhHHH-HH--------------HHHHHHhcccCCCCCEEEEECCCCCCHHHHHHH
Confidence 368999999999996421000 00 1112222211 1234678999999999999986
|
|
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.8e-09 Score=85.75 Aligned_cols=119 Identities=18% Similarity=0.142 Sum_probs=82.1
Q ss_pred cccceeEEEEe--eeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 88 KTTGIVEVHFS--FKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 88 pT~Gi~~~~~~--~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
-|+......+. ..+..++++|++|+..+.+........+|++|+|+|..+ .-.....+.+..+..
T Consensus 54 ~ti~~~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~-----------g~~~~~~~~l~~~~~-- 120 (188)
T PF00009_consen 54 ITIDLSFISFEKNENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDAND-----------GIQPQTEEHLKILRE-- 120 (188)
T ss_dssp SSSSSEEEEEEBTESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTT-----------BSTHHHHHHHHHHHH--
T ss_pred cccccccccccccccccceeecccccccceeecccceecccccceeeeeccc-----------ccccccccccccccc--
Confidence 34444555555 677899999999999998888888999999999999986 222344444544433
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHh----hh---ccceeecccccccceeeeeehh
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESL----KL---FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f----~~---~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+.|+++++||+|+...++... .+-+...+ .. ..+.++++||++|.||..+++.
T Consensus 121 --~~~p~ivvlNK~D~~~~~~~~~----------------~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~ 181 (188)
T PF00009_consen 121 --LGIPIIVVLNKMDLIEKELEEI----------------IEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEA 181 (188)
T ss_dssp --TT-SEEEEEETCTSSHHHHHHH----------------HHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHH
T ss_pred --cccceEEeeeeccchhhhHHHH----------------HHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHH
Confidence 3688999999999985432211 11222222 11 2467899999999999988853
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.9e-09 Score=100.21 Aligned_cols=129 Identities=12% Similarity=0.072 Sum_probs=76.8
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.-|+......+..++..+.+||++|++.+.+....++.+++++|+|+|.++-+. .........+ .++. .
T Consensus 70 g~Tid~~~~~~~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~--------~~~~~t~~~~-~~~~--~ 138 (426)
T TIGR00483 70 GVTIDVAHWKFETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEF--------EVQPQTREHA-FLAR--T 138 (426)
T ss_pred CceEEEEEEEEccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCc--------ccCCchHHHH-HHHH--H
Confidence 345555566677788999999999999887666667789999999999987210 0111111111 1121 1
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcch-hHHHHHH-hhhccceeecccccccceeeeeeh
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGE-RNRMQES-LKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~-~~~i~~~-f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
....+++|++||+|+.+.. ...+... ..+ .+++... +....+.++++||++|.||.+.+.
T Consensus 139 ~~~~~iIVviNK~Dl~~~~--~~~~~~~--------~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 139 LGINQLIVAINKMDSVNYD--EEEFEAI--------KKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred cCCCeEEEEEEChhccCcc--HHHHHHH--------HHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence 2335899999999985310 0000000 000 1111110 111246788999999999998765
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.4e-09 Score=98.65 Aligned_cols=129 Identities=11% Similarity=0.046 Sum_probs=79.2
Q ss_pred cccceeEEEEeeeccceeeeecCCccc----cc---hhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHH
Q psy6623 88 KTTGIVEVHFSFKNLNFKLFDVGGQRS----ER---KKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDS 160 (262)
Q Consensus 88 pT~Gi~~~~~~~~~~~~~i~D~~Gq~~----~r---~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~ 160 (262)
+|+..+...+.+++..+.+||++|... .+ .....+++.++++|+|+|+++.+.- .+....+......+..
T Consensus 192 TTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~---rdp~~d~~~i~~EL~~ 268 (500)
T PRK12296 192 TTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPG---RDPLSDIDALEAELAA 268 (500)
T ss_pred ccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccc---cCchhhHHHHHHHHHH
Confidence 455555556677788999999999632 11 1223356889999999999862100 0011223333333333
Q ss_pred HHhC-------CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeee
Q psy6623 161 ICNN-------KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILF 233 (262)
Q Consensus 161 i~~~-------~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~ 233 (262)
.... ..+.+.|++|++||+|+...+- + .+.+...+..+.+.++.+||++++||++
T Consensus 269 y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e----l--------------~e~l~~~l~~~g~~Vf~ISA~tgeGLdE 330 (500)
T PRK12296 269 YAPALDGDLGLGDLAERPRLVVLNKIDVPDARE----L--------------AEFVRPELEARGWPVFEVSAASREGLRE 330 (500)
T ss_pred hhhcccccchhhhhcCCCEEEEEECccchhhHH----H--------------HHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 3221 0345789999999999975320 0 1222233333457789999999999999
Q ss_pred eehh
Q psy6623 234 LNKK 237 (262)
Q Consensus 234 ~f~~ 237 (262)
++..
T Consensus 331 L~~~ 334 (500)
T PRK12296 331 LSFA 334 (500)
T ss_pred HHHH
Confidence 9864
|
|
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.4e-09 Score=102.83 Aligned_cols=109 Identities=16% Similarity=0.087 Sum_probs=73.3
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
+..+.+|||+|++.|..+|..++..++++|+|+|.++- ...++.+.+..+. ..++|++|++||+|
T Consensus 294 ~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dG-----------v~~QT~E~I~~~k----~~~iPiIVViNKiD 358 (742)
T CHL00189 294 NQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDG-----------VKPQTIEAINYIQ----AANVPIIVAINKID 358 (742)
T ss_pred ceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCC-----------CChhhHHHHHHHH----hcCceEEEEEECCC
Confidence 48899999999999999999999999999999998761 1223333333332 24689999999999
Q ss_pred hhhhhhcc--CCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 181 LFEEKIKK--SPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~--~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+....... ..+..+ ..+...+ ...+.++++||++|.||.++|+.
T Consensus 359 l~~~~~e~v~~eL~~~------------~ll~e~~-g~~vpvv~VSAktG~GIdeLle~ 404 (742)
T CHL00189 359 KANANTERIKQQLAKY------------NLIPEKW-GGDTPMIPISASQGTNIDKLLET 404 (742)
T ss_pred ccccCHHHHHHHHHHh------------ccchHhh-CCCceEEEEECCCCCCHHHHHHh
Confidence 86521100 000000 0000000 02356889999999999999975
|
|
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.1e-09 Score=99.29 Aligned_cols=107 Identities=19% Similarity=0.229 Sum_probs=73.2
Q ss_pred ccceeEEEEeeeccceeeeecCCccccchh--------hhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHH
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRSERKK--------WIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDS 160 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~--------w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~ 160 (262)
|..+....+.+++..+.+|||+|++..... ...++++++++|+|+|.++ .....+ ...+..
T Consensus 250 T~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~----------~~s~~~-~~~l~~ 318 (449)
T PRK05291 250 TRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASE----------PLTEED-DEILEE 318 (449)
T ss_pred ccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCC----------CCChhH-HHHHHh
Confidence 344555667778889999999998754321 2347899999999999987 333332 333332
Q ss_pred HHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 161 ICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 161 i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
..+.|+++|+||+|+..+.... . .....++.+||++|+||+++++.
T Consensus 319 ------~~~~piiiV~NK~DL~~~~~~~----~---------------------~~~~~~i~iSAktg~GI~~L~~~ 364 (449)
T PRK05291 319 ------LKDKPVIVVLNKADLTGEIDLE----E---------------------ENGKPVIRISAKTGEGIDELREA 364 (449)
T ss_pred ------cCCCCcEEEEEhhhccccchhh----h---------------------ccCCceEEEEeeCCCCHHHHHHH
Confidence 3468999999999986421110 0 01234678999999999999963
|
|
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=98.86 E-value=1e-08 Score=94.82 Aligned_cols=114 Identities=16% Similarity=0.126 Sum_probs=69.8
Q ss_pred EEeee-ccceeeeecCCccc----cc---hhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh-CCC
Q psy6623 96 HFSFK-NLNFKLFDVGGQRS----ER---KKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN-NKW 166 (262)
Q Consensus 96 ~~~~~-~~~~~i~D~~Gq~~----~r---~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~-~~~ 166 (262)
.+.+. +.++.+||++|... .+ ..|..+.+.++++|+|+|+++.+ ..+.+.+...+.+++.. .+.
T Consensus 199 ~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~-------~~dp~e~~~~i~~EL~~y~~~ 271 (424)
T PRK12297 199 VVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSE-------GRDPIEDYEKINKELKLYNPR 271 (424)
T ss_pred EEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccc-------cCChHHHHHHHHHHHhhhchh
Confidence 34455 67899999999743 11 22333456799999999998631 01233333333333332 233
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+.+.|++|++||+|+.... .. .+-+.+.+ .+.++.+||++++||+++++.
T Consensus 272 L~~kP~IVV~NK~DL~~~~------e~------------l~~l~~~l---~~~i~~iSA~tgeGI~eL~~~ 321 (424)
T PRK12297 272 LLERPQIVVANKMDLPEAE------EN------------LEEFKEKL---GPKVFPISALTGQGLDELLYA 321 (424)
T ss_pred ccCCcEEEEEeCCCCcCCH------HH------------HHHHHHHh---CCcEEEEeCCCCCCHHHHHHH
Confidence 4578999999999984210 00 11111211 255788999999999999964
|
|
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.6e-09 Score=87.35 Aligned_cols=123 Identities=13% Similarity=0.076 Sum_probs=73.1
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.-|+......+..++.++.+|||+|++.+...+...++.++++|+|+|.++ .........+. ++..
T Consensus 62 g~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~-----------~~~~~~~~~~~-~~~~-- 127 (208)
T cd04166 62 GITIDVAYRYFSTPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARK-----------GVLEQTRRHSY-ILSL-- 127 (208)
T ss_pred CcCeecceeEEecCCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCC-----------CccHhHHHHHH-HHHH--
Confidence 344444555667788899999999999887777888899999999999885 11112222222 2211
Q ss_pred CCCCeEEEEeeCCchhhhhhcc-CCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeee
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKK-SPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFL 234 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~-~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~ 234 (262)
....++++++||+|+....-.. ..+.. +..-+...+.-..+.++.+||++|.||.+.
T Consensus 128 ~~~~~iIvviNK~D~~~~~~~~~~~i~~-----------~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 128 LGIRHVVVAVNKMDLVDYSEEVFEEIVA-----------DYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred cCCCcEEEEEEchhcccCCHHHHHHHHH-----------HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 1224578899999985310000 00000 011111111112345789999999999854
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.5e-09 Score=96.10 Aligned_cols=106 Identities=22% Similarity=0.232 Sum_probs=70.3
Q ss_pred eeEEEEeeeccceeeeecCCccccchhh--------hccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh
Q psy6623 92 IVEVHFSFKNLNFKLFDVGGQRSERKKW--------IHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN 163 (262)
Q Consensus 92 i~~~~~~~~~~~~~i~D~~Gq~~~r~~w--------~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~ 163 (262)
+.+..+.+++..+++|||+|++.....+ ..++++++++|+|+|.++ ..+..+. ++..+..
T Consensus 241 ~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~----------~~s~~~~--~l~~~~~ 308 (442)
T TIGR00450 241 VVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQ----------PLTKDDF--LIIDLNK 308 (442)
T ss_pred EEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCC----------CCChhHH--HHHHHhh
Confidence 3445667788889999999997654332 357899999999999987 3333332 4444332
Q ss_pred CCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 164 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 164 ~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.++|+++|+||+|+... +... +++. ..+.++.+||++ .||.++|+.
T Consensus 309 ----~~~piIlV~NK~Dl~~~-----~~~~-~~~~-----------------~~~~~~~vSak~-~gI~~~~~~ 354 (442)
T TIGR00450 309 ----SKKPFILVLNKIDLKIN-----SLEF-FVSS-----------------KVLNSSNLSAKQ-LKIKALVDL 354 (442)
T ss_pred ----CCCCEEEEEECccCCCc-----chhh-hhhh-----------------cCCceEEEEEec-CCHHHHHHH
Confidence 36899999999998542 1100 0100 113356789997 688888864
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-08 Score=95.15 Aligned_cols=126 Identities=17% Similarity=0.145 Sum_probs=76.9
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+--|+.+....+..++.++.+|||+|++.+.+.......+++++|+|+|.++-. .........+.. +..
T Consensus 68 rG~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~---------~~~~~~~~~~~~-~~~- 136 (425)
T PRK12317 68 RGVTIDLAHKKFETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAG---------GVMPQTREHVFL-ART- 136 (425)
T ss_pred cCccceeeeEEEecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCC---------CCCcchHHHHHH-HHH-
Confidence 345666777778888999999999999877655455568899999999998510 001111222211 111
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-----ccceeecccccccceeeeeeh
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-----FDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-----~~~~~~~tsA~d~~~I~~~f~ 236 (262)
....|++|++||+|+....... +.. ..+.+.+.+.. ..+.++++||++|+||.+.+.
T Consensus 137 -~~~~~iivviNK~Dl~~~~~~~--~~~-----------~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 137 -LGINQLIVAINKMDAVNYDEKR--YEE-----------VKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred -cCCCeEEEEEEccccccccHHH--HHH-----------HHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 2234799999999986410000 000 01112111111 236688999999999998765
|
|
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.6e-09 Score=99.34 Aligned_cols=111 Identities=19% Similarity=0.133 Sum_probs=75.2
Q ss_pred eeEEEEeeeccceeeeecCCccccchh------hhccc--cCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh
Q psy6623 92 IVEVHFSFKNLNFKLFDVGGQRSERKK------WIHCF--EDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN 163 (262)
Q Consensus 92 i~~~~~~~~~~~~~i~D~~Gq~~~r~~------w~~~f--~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~ 163 (262)
.....+.+++.++++||++|+.+++.. +..|+ ++++++++|+|.++. +..+.+..++.+
T Consensus 31 ~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~l-------------er~l~l~~ql~~ 97 (591)
T TIGR00437 31 KKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNL-------------ERNLYLTLQLLE 97 (591)
T ss_pred EEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcc-------------hhhHHHHHHHHh
Confidence 344556667788999999999887654 45554 479999999998862 223344444443
Q ss_pred CCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 164 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 164 ~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.++|+++++||+|+.+++-.... .+.+.++ ..+.+++|||++|+||+++|+.
T Consensus 98 ----~~~PiIIVlNK~Dl~~~~~i~~d---------------~~~L~~~---lg~pvv~tSA~tg~Gi~eL~~~ 149 (591)
T TIGR00437 98 ----LGIPMILALNLVDEAEKKGIRID---------------EEKLEER---LGVPVVPTSATEGRGIERLKDA 149 (591)
T ss_pred ----cCCCEEEEEehhHHHHhCCChhh---------------HHHHHHH---cCCCEEEEECCCCCCHHHHHHH
Confidence 26899999999998653211100 1122221 2466889999999999999974
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.5e-09 Score=96.03 Aligned_cols=108 Identities=19% Similarity=0.105 Sum_probs=70.6
Q ss_pred eeEEEEeeeccceeeeecCCccc--------cchhhhccccCCCEEEEeeeccccccccccCcccccHH-HHHHHHHHHH
Q psy6623 92 IVEVHFSFKNLNFKLFDVGGQRS--------ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQ-ESLKLFDSIC 162 (262)
Q Consensus 92 i~~~~~~~~~~~~~i~D~~Gq~~--------~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~-e~~~~~~~i~ 162 (262)
.......+++..+.+|||+|+.. .+..+..++++++++|||+|.++- ..... +...+++.
T Consensus 39 ~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~---------~~~~~~~~~~~l~~-- 107 (435)
T PRK00093 39 RIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAG---------LTPADEEIAKILRK-- 107 (435)
T ss_pred ceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCC---------CCHHHHHHHHHHHH--
Confidence 44455667788999999999987 445566788999999999998761 11111 12222221
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~~ 237 (262)
.+.|+++++||+|+.... ... .++ ....+ .++++||++|.||.++|+.
T Consensus 108 -----~~~piilv~NK~D~~~~~---~~~--------------~~~-----~~lg~~~~~~iSa~~g~gv~~l~~~ 156 (435)
T PRK00093 108 -----SNKPVILVVNKVDGPDEE---ADA--------------YEF-----YSLGLGEPYPISAEHGRGIGDLLDA 156 (435)
T ss_pred -----cCCcEEEEEECccCccch---hhH--------------HHH-----HhcCCCCCEEEEeeCCCCHHHHHHH
Confidence 268999999999964310 000 111 11112 2578999999999999964
|
|
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.3e-08 Score=98.13 Aligned_cols=107 Identities=9% Similarity=0.047 Sum_probs=74.6
Q ss_pred eEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeE
Q psy6623 93 VEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSI 172 (262)
Q Consensus 93 ~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pi 172 (262)
....+.+++.++++|||+|+..+...|..+++.++++|+|+|.++ .........+..... .++|+
T Consensus 59 ~~~~i~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~-----------G~~~qt~~~l~~a~~----~gip~ 123 (607)
T PRK10218 59 KNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFD-----------GPMPQTRFVTKKAFA----YGLKP 123 (607)
T ss_pred EEEEEecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEeccc-----------CccHHHHHHHHHHHH----cCCCE
Confidence 344566788999999999999999999999999999999999986 222334444444433 36788
Q ss_pred EEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-------ccceeecccccccce
Q psy6623 173 ILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-------FDSICNNKWFTDTSI 230 (262)
Q Consensus 173 il~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-------~~~~~~~tsA~d~~~ 230 (262)
+++.||+|+...+.... .+-+.+.|.. ..+.+.++||++|.+
T Consensus 124 IVviNKiD~~~a~~~~v----------------l~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~ 172 (607)
T PRK10218 124 IVVINKVDRPGARPDWV----------------VDQVFDLFVNLDATDEQLDFPIVYASALNGIA 172 (607)
T ss_pred EEEEECcCCCCCchhHH----------------HHHHHHHHhccCccccccCCCEEEeEhhcCcc
Confidence 99999999865321110 1112222211 346788999999985
|
|
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=98.78 E-value=9e-09 Score=99.09 Aligned_cols=83 Identities=16% Similarity=0.145 Sum_probs=66.3
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+..|+......+.+++.++++|||+|+..|...+..+++.++++|+|+|.++ ........+|..+..
T Consensus 48 rGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~-----------G~~~qT~~~l~~a~~-- 114 (594)
T TIGR01394 48 RGITILAKNTAIRYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASE-----------GPMPQTRFVLKKALE-- 114 (594)
T ss_pred CCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCC-----------CCcHHHHHHHHHHHH--
Confidence 3445555556778889999999999999999999999999999999999985 234555566666654
Q ss_pred CCCCCeEEEEeeCCchhh
Q psy6623 166 WFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~ 183 (262)
.++|++||+||+|+..
T Consensus 115 --~~ip~IVviNKiD~~~ 130 (594)
T TIGR01394 115 --LGLKPIVVINKIDRPS 130 (594)
T ss_pred --CCCCEEEEEECCCCCC
Confidence 3578999999999864
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.7e-09 Score=95.25 Aligned_cols=122 Identities=14% Similarity=0.117 Sum_probs=71.1
Q ss_pred ccceeEEEEeeecc-ceeeeecCCcccc--chhhh------ccccCCCEEEEeeeccccccccccCcccccHHHHHHHHH
Q psy6623 89 TTGIVEVHFSFKNL-NFKLFDVGGQRSE--RKKWI------HCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFD 159 (262)
Q Consensus 89 T~Gi~~~~~~~~~~-~~~i~D~~Gq~~~--r~~w~------~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~ 159 (262)
|+......+.+.+. .+.+|||+|..+. ...|. ..+++++++|+|+|.|+ ... .+.+..+.
T Consensus 231 Tld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~----------~~~-~e~l~~v~ 299 (426)
T PRK11058 231 TLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAAD----------VRV-QENIEAVN 299 (426)
T ss_pred CcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCC----------ccH-HHHHHHHH
Confidence 33334445555553 7889999998432 22333 34689999999999997 322 23332233
Q ss_pred HHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhH
Q psy6623 160 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 239 (262)
Q Consensus 160 ~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~l 239 (262)
.++..-...+.|+++++||+|+....... ... .. ...+ ....+||++|+||.++++ +
T Consensus 300 ~iL~el~~~~~pvIiV~NKiDL~~~~~~~-----------------~~~--~~-~~~~-~~v~ISAktG~GIdeL~e--~ 356 (426)
T PRK11058 300 TVLEEIDAHEIPTLLVMNKIDMLDDFEPR-----------------IDR--DE-ENKP-IRVWLSAQTGAGIPLLFQ--A 356 (426)
T ss_pred HHHHHhccCCCCEEEEEEcccCCCchhHH-----------------HHH--Hh-cCCC-ceEEEeCCCCCCHHHHHH--H
Confidence 33322122468999999999985321000 000 00 0011 135699999999999995 3
Q ss_pred HHhhc
Q psy6623 240 FEEKI 244 (262)
Q Consensus 240 L~~~i 244 (262)
+...+
T Consensus 357 I~~~l 361 (426)
T PRK11058 357 LTERL 361 (426)
T ss_pred HHHHh
Confidence 44443
|
|
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.9e-09 Score=83.13 Aligned_cols=97 Identities=16% Similarity=0.201 Sum_probs=60.3
Q ss_pred eeecCCccccchhhhc----cccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCch
Q psy6623 106 LFDVGGQRSERKKWIH----CFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181 (262)
Q Consensus 106 i~D~~Gq~~~r~~w~~----~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl 181 (262)
+|||+|+...+..|.. .+++++++|+|+|.++-+ +... .++..+ ..+.|+++++||+|+
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~----------s~~~--~~~~~~-----~~~~~ii~v~nK~Dl 103 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPE----------SRLP--AGLLDI-----GVSKRQIAVISKTDM 103 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcc----------cccC--HHHHhc-----cCCCCeEEEEEcccc
Confidence 7999998444433422 368999999999998732 1111 122222 135789999999998
Q ss_pred hhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 182 FEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 182 ~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
...... .+ .+++.+.. -...+++|||++|+||.++|+.
T Consensus 104 ~~~~~~--~~--------------~~~~~~~~--~~~p~~~~Sa~~g~gi~~l~~~ 141 (158)
T PRK15467 104 PDADVA--AT--------------RKLLLETG--FEEPIFELNSHDPQSVQQLVDY 141 (158)
T ss_pred CcccHH--HH--------------HHHHHHcC--CCCCEEEEECCCccCHHHHHHH
Confidence 531100 00 22222211 1146889999999999999964
|
|
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.4e-08 Score=78.79 Aligned_cols=102 Identities=17% Similarity=0.160 Sum_probs=67.9
Q ss_pred EEEEeeeccceeeeecCCccccch--------hhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 94 EVHFSFKNLNFKLFDVGGQRSERK--------KWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 94 ~~~~~~~~~~~~i~D~~Gq~~~r~--------~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
...+...+..+.+|||+|...... .-..++..++++++|+|+++ .....+.. .+..
T Consensus 41 ~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~----------~~~~~~~~-~~~~----- 104 (157)
T cd04164 41 EESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASR----------GLDEEDLE-ILEL----- 104 (157)
T ss_pred EEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCC----------CCCHHHHH-HHHh-----
Confidence 334555677899999999765432 11246789999999999997 23333322 2221
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
..+.|+++++||+|+..+... .+.+ ....+..+||+++.|+.++++
T Consensus 105 -~~~~~vi~v~nK~D~~~~~~~---------~~~~---------------~~~~~~~~Sa~~~~~v~~l~~ 150 (157)
T cd04164 105 -PADKPIIVVLNKSDLLPDSEL---------LSLL---------------AGKPIIAISAKTGEGLDELKE 150 (157)
T ss_pred -hcCCCEEEEEEchhcCCcccc---------cccc---------------CCCceEEEECCCCCCHHHHHH
Confidence 346899999999998753211 0001 224577899999999999985
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.5e-08 Score=95.82 Aligned_cols=66 Identities=14% Similarity=0.076 Sum_probs=49.9
Q ss_pred ceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchh
Q psy6623 103 NFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182 (262)
Q Consensus 103 ~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~ 182 (262)
.+.+|||+||+.++.+|..+++.++++|+|+|+++- -..++.+.+..+.. .++|++|++||+|+.
T Consensus 70 ~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g-----------~~~qt~e~i~~l~~----~~vpiIVv~NK~Dl~ 134 (590)
T TIGR00491 70 GLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEG-----------FKPQTQEALNILRM----YKTPFVVAANKIDRI 134 (590)
T ss_pred cEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcC-----------CCHhHHHHHHHHHH----cCCCEEEEEECCCcc
Confidence 488999999999999999999999999999999861 11122222222221 368999999999996
Q ss_pred h
Q psy6623 183 E 183 (262)
Q Consensus 183 ~ 183 (262)
.
T Consensus 135 ~ 135 (590)
T TIGR00491 135 P 135 (590)
T ss_pred c
Confidence 4
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >KOG4423|consensus | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.3e-09 Score=84.53 Aligned_cols=109 Identities=11% Similarity=0.089 Sum_probs=77.2
Q ss_pred cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC---CCCCCCeEEEEeeC
Q psy6623 102 LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN---KWFTDTSIILFLNK 178 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~---~~~~~~piil~~NK 178 (262)
+.+++||++||+++-.+...||+.+++...|+|+|. ...++-...|.+.+... +.-..+|+++++||
T Consensus 75 vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~----------s~tfe~~skwkqdldsk~qLpng~Pv~~vllank 144 (229)
T KOG4423|consen 75 VRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTR----------SLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANK 144 (229)
T ss_pred HHHHHhcchhhhhhcceEEEEecCCcceEEEEEccc----------cccccHHHHHHHhccCcccCCCCCcchheeccch
Confidence 678999999999999999999999999999999998 45555556665555433 33345789999999
Q ss_pred CchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeeh
Q psy6623 179 KDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 179 ~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~ 236 (262)
||.........+ ..|..|... +.+ -+++||||...||.++-.
T Consensus 145 Cd~e~~a~~~~~--~~~d~f~ke--------------ngf~gwtets~Kenkni~Ea~r 187 (229)
T KOG4423|consen 145 CDQEKSAKNEAT--RQFDNFKKE--------------NGFEGWTETSAKENKNIPEAQR 187 (229)
T ss_pred hccChHhhhhhH--HHHHHHHhc--------------cCccceeeeccccccChhHHHH
Confidence 998653322211 111111111 111 267899999999998875
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.8e-08 Score=81.22 Aligned_cols=112 Identities=13% Similarity=0.089 Sum_probs=65.4
Q ss_pred ccceeeeecCCc----------cccchhhhccccCC---CEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 101 NLNFKLFDVGGQ----------RSERKKWIHCFEDV---TAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 101 ~~~~~i~D~~Gq----------~~~r~~w~~~f~~~---~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
+.++.+|||+|. +.++.....|++.+ +++++|+|.++ .....+ ..+...+..
T Consensus 69 ~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~----------~~~~~~--~~i~~~l~~--- 133 (196)
T PRK00454 69 NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRH----------PLKELD--LQMIEWLKE--- 133 (196)
T ss_pred CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCC----------CCCHHH--HHHHHHHHH---
Confidence 468999999994 33444555666554 67888888765 111111 111122221
Q ss_pred CCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 168 TDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 168 ~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
.+.|+++++||+|+........ + ...+...+......++++||++++|++++|+ ++.+.+
T Consensus 134 ~~~~~iiv~nK~Dl~~~~~~~~-~--------------~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~--~i~~~~ 193 (196)
T PRK00454 134 YGIPVLIVLTKADKLKKGERKK-Q--------------LKKVRKALKFGDDEVILFSSLKKQGIDELRA--AIAKWL 193 (196)
T ss_pred cCCcEEEEEECcccCCHHHHHH-H--------------HHHHHHHHHhcCCceEEEEcCCCCCHHHHHH--HHHHHh
Confidence 3588999999999864210000 0 1222222222245677899999999999995 454443
|
|
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.7e-08 Score=79.62 Aligned_cols=115 Identities=17% Similarity=0.238 Sum_probs=69.8
Q ss_pred EEEeeeccceeeeecCCccccch-----------hhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh
Q psy6623 95 VHFSFKNLNFKLFDVGGQRSERK-----------KWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN 163 (262)
Q Consensus 95 ~~~~~~~~~~~i~D~~Gq~~~r~-----------~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~ 163 (262)
..+..++..+.+||++|...... ....++++++++|+|+|.++ ... .....++..+..
T Consensus 43 ~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~----------~~~-~~~~~~~~~~~~ 111 (174)
T cd01895 43 VPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATE----------GIT-EQDLRIAGLILE 111 (174)
T ss_pred eEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCC----------Ccc-hhHHHHHHHHHh
Confidence 44555677789999999754311 11335689999999999886 222 222333333332
Q ss_pred CCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehh
Q psy6623 164 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 164 ~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+.|+++++||+|+....... ... ..+.+.+.+.. ....++.+||++++|+.++++.
T Consensus 112 ----~~~~~iiv~nK~Dl~~~~~~~--~~~-----------~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 169 (174)
T cd01895 112 ----EGKALVIVVNKWDLVEKDSKT--MKE-----------FKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDA 169 (174)
T ss_pred ----cCCCEEEEEeccccCCccHHH--HHH-----------HHHHHHhhcccccCCceEEEeccCCCCHHHHHHH
Confidence 358999999999986531000 000 01222222221 2356888999999999998864
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.2e-08 Score=96.10 Aligned_cols=104 Identities=15% Similarity=0.076 Sum_probs=66.0
Q ss_pred eeeccceeeeecCCccc--------cchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCC
Q psy6623 98 SFKNLNFKLFDVGGQRS--------ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTD 169 (262)
Q Consensus 98 ~~~~~~~~i~D~~Gq~~--------~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~ 169 (262)
.+++..+.+|||+|++. ++.....+++.++++|||+|.++- .....+ .+.+ .+.. .+
T Consensus 319 ~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~---------~~~~d~--~i~~-~Lr~---~~ 383 (712)
T PRK09518 319 EWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVG---------LTSTDE--RIVR-MLRR---AG 383 (712)
T ss_pred EECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCC---------CCHHHH--HHHH-HHHh---cC
Confidence 34567899999999864 344556688999999999998751 111111 2222 2221 47
Q ss_pred CeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 170 TSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 170 ~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.|+++|+||+|+.... ... .++....+ . ..+++||++|.||.++|+.
T Consensus 384 ~pvIlV~NK~D~~~~~---~~~--------------~~~~~lg~--~--~~~~iSA~~g~GI~eLl~~ 430 (712)
T PRK09518 384 KPVVLAVNKIDDQASE---YDA--------------AEFWKLGL--G--EPYPISAMHGRGVGDLLDE 430 (712)
T ss_pred CCEEEEEECcccccch---hhH--------------HHHHHcCC--C--CeEEEECCCCCCchHHHHH
Confidence 8999999999985421 000 11111111 1 1357999999999999963
|
|
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.2e-08 Score=84.20 Aligned_cols=83 Identities=17% Similarity=0.185 Sum_probs=64.2
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+.-|+......+..++.++++|||+|+..+...|..+++.++++|+|+|.++ . -......+++.+..
T Consensus 48 rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~----------g-~~~~~~~~~~~~~~-- 114 (237)
T cd04168 48 RGITIFSAVASFQWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVE----------G-VQAQTRILWRLLRK-- 114 (237)
T ss_pred CCCceeeeeEEEEECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCC----------C-CCHHHHHHHHHHHH--
Confidence 3445566667788889999999999999999999999999999999999986 1 11233444444332
Q ss_pred CCCCCeEEEEeeCCchhh
Q psy6623 166 WFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~ 183 (262)
.++|+++++||+|+..
T Consensus 115 --~~~P~iivvNK~D~~~ 130 (237)
T cd04168 115 --LNIPTIIFVNKIDRAG 130 (237)
T ss_pred --cCCCEEEEEECccccC
Confidence 3689999999999864
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-07 Score=83.22 Aligned_cols=112 Identities=16% Similarity=0.077 Sum_probs=68.8
Q ss_pred eccceeeeecCCccccch--------hhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCe
Q psy6623 100 KNLNFKLFDVGGQRSERK--------KWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTS 171 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~--------~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~p 171 (262)
++.++.+|||+|....+. .+..++++++++++|+|.++ ..+.. ..++..+. . .+.|
T Consensus 46 ~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~----------~~~~~--~~i~~~l~-~---~~~p 109 (270)
T TIGR00436 46 GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQ----------WNGDG--EFVLTKLQ-N---LKRP 109 (270)
T ss_pred CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCC----------CCchH--HHHHHHHH-h---cCCC
Confidence 456789999999854321 23457799999999999987 22222 12222222 2 3689
Q ss_pred EEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeehhhHHHhhccCC
Q psy6623 172 IILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNKKDLFEEKIKKS 247 (262)
Q Consensus 172 iil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~~~lL~~~i~~~ 247 (262)
+++++||+|+..... + .+.+......... .++++||++|.||+++++ ++.+.+..+
T Consensus 110 ~ilV~NK~Dl~~~~~----~--------------~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~--~l~~~l~~~ 166 (270)
T TIGR00436 110 VVLTRNKLDNKFKDK----L--------------LPLIDKYAILEDFKDIVPISALTGDNTSFLAA--FIEVHLPEG 166 (270)
T ss_pred EEEEEECeeCCCHHH----H--------------HHHHHHHHhhcCCCceEEEecCCCCCHHHHHH--HHHHhCCCC
Confidence 999999999853110 0 0011110000111 478899999999999984 566655443
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.7e-08 Score=89.80 Aligned_cols=108 Identities=19% Similarity=0.086 Sum_probs=70.8
Q ss_pred eEEEEeeeccceeeeecCCc--------cccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 93 VEVHFSFKNLNFKLFDVGGQ--------RSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 93 ~~~~~~~~~~~~~i~D~~Gq--------~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
......+++..+.+|||+|. +.++..+..++++++++|||+|.++ .- ......+ ...+..
T Consensus 38 ~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~----------~~-~~~d~~i-~~~l~~ 105 (429)
T TIGR03594 38 KYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGRE----------GL-TPEDEEI-AKWLRK 105 (429)
T ss_pred eEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCC----------CC-CHHHHHH-HHHHHH
Confidence 44555667888999999996 4556667778999999999999875 11 1111112 222221
Q ss_pred CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeehh
Q psy6623 165 KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~~ 237 (262)
.+.|+++++||+|+..+.... .+ +....+ .++.+||++|.||.++++.
T Consensus 106 ---~~~piilVvNK~D~~~~~~~~-----------------~~-----~~~lg~~~~~~vSa~~g~gv~~ll~~ 154 (429)
T TIGR03594 106 ---SGKPVILVANKIDGKKEDAVA-----------------AE-----FYSLGFGEPIPISAEHGRGIGDLLDA 154 (429)
T ss_pred ---hCCCEEEEEECccCCcccccH-----------------HH-----HHhcCCCCeEEEeCCcCCChHHHHHH
Confidence 268999999999986422100 01 111112 3678999999999999864
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.2e-07 Score=77.63 Aligned_cols=100 Identities=16% Similarity=0.293 Sum_probs=59.0
Q ss_pred ceeeeecCCccc------cchhh----hcccc---CCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCC
Q psy6623 103 NFKLFDVGGQRS------ERKKW----IHCFE---DVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTD 169 (262)
Q Consensus 103 ~~~i~D~~Gq~~------~r~~w----~~~f~---~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~ 169 (262)
.+.+||++|... .+..| ..|++ .++++|+|+|.++ . -......++. .+.. .+
T Consensus 65 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~----------~-~~~~~~~~~~-~~~~---~~ 129 (179)
T TIGR03598 65 GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRH----------P-LKELDLEMLE-WLRE---RG 129 (179)
T ss_pred cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCC----------C-CCHHHHHHHH-HHHH---cC
Confidence 689999999532 12333 34555 4679999999875 1 1112222232 2222 36
Q ss_pred CeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh--ccceeecccccccceee
Q psy6623 170 TSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL--FDSICNNKWFTDTSIIL 232 (262)
Q Consensus 170 ~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~--~~~~~~~tsA~d~~~I~ 232 (262)
.|+++++||+|+..+.-... ..+.+++.+.. ..+.++.+||++|+||+
T Consensus 130 ~pviiv~nK~D~~~~~~~~~---------------~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 130 IPVLIVLTKADKLKKSELNK---------------QLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred CCEEEEEECcccCCHHHHHH---------------HHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 89999999999863210000 02333343333 23568999999999984
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.4e-08 Score=84.53 Aligned_cols=83 Identities=19% Similarity=0.303 Sum_probs=61.7
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+..|+......+.+++.++++|||+|+..+...+..+++.++++|+|+|.++- - ......+++. ...
T Consensus 55 rg~si~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g----------~-~~~~~~i~~~-~~~- 121 (267)
T cd04169 55 RGISVTSSVMQFEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKG----------V-EPQTRKLFEV-CRL- 121 (267)
T ss_pred CCCCeEEEEEEEeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCC----------c-cHHHHHHHHH-HHh-
Confidence 44555666778888999999999999999888777889999999999998861 1 1122233332 221
Q ss_pred CCCCCeEEEEeeCCchhh
Q psy6623 166 WFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~ 183 (262)
.++|+++++||+|+..
T Consensus 122 --~~~P~iivvNK~D~~~ 137 (267)
T cd04169 122 --RGIPIITFINKLDREG 137 (267)
T ss_pred --cCCCEEEEEECCccCC
Confidence 3689999999999854
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.4e-08 Score=83.55 Aligned_cols=138 Identities=17% Similarity=0.283 Sum_probs=77.3
Q ss_pred CCCCcCccccceeeecccceeEEEEee-eccceeeeecCCccccch-----hhhccccCCCEEEEeeeccccccccccCc
Q psy6623 73 KEYQPTEQDILRTRVKTTGIVEVHFSF-KNLNFKLFDVGGQRSERK-----KWIHCFEDVTAIIFCVAMSEYDQVLHEDE 146 (262)
Q Consensus 73 ~~y~pt~~Dil~~~~pT~Gi~~~~~~~-~~~~~~i~D~~Gq~~~r~-----~w~~~f~~~~~iIfv~dls~~d~~~~e~~ 146 (262)
.+|.|.+.=.+ .||+.+....+.. +.+.+++||.|||..+-. .....|+++.++|||+|+.+
T Consensus 21 ~~~~p~dT~~L---~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs--------- 88 (232)
T PF04670_consen 21 HKYSPRDTLRL---EPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQS--------- 88 (232)
T ss_dssp S---GGGGGG--------SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT----------
T ss_pred cCCCchhcccc---CCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEccc---------
Confidence 46666442211 4777777777764 568999999999976543 35678999999999999984
Q ss_pred ccccHHHHHHHHHHHHhC--CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhc---cceee
Q psy6623 147 TTNRMQESLKLFDSICNN--KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLF---DSICN 221 (262)
Q Consensus 147 ~~~~l~e~~~~~~~i~~~--~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~---~~~~~ 221 (262)
....+++..+...+.. ...+++.+.++..|+|+..+.-...-... ..+-+.+...+. .+.+|
T Consensus 89 --~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~-----------~~~~i~~~~~~~~~~~~~~~ 155 (232)
T PF04670_consen 89 --DDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRD-----------IQQRIRDELEDLGIEDITFF 155 (232)
T ss_dssp --STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHH-----------HHHHHHHHHHHTT-TSEEEE
T ss_pred --ccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHH-----------HHHHHHHHhhhccccceEEE
Confidence 2355555555554432 22357899999999998643211100000 022233333333 38899
Q ss_pred cccccccceeeeeeh
Q psy6623 222 NKWFTDTSIILFLNK 236 (262)
Q Consensus 222 ~tsA~d~~~I~~~f~ 236 (262)
.||--| +.|.++|.
T Consensus 156 ~TSI~D-~Sly~A~S 169 (232)
T PF04670_consen 156 LTSIWD-ESLYEAWS 169 (232)
T ss_dssp EE-TTS-THHHHHHH
T ss_pred eccCcC-cHHHHHHH
Confidence 999888 45655554
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.9e-08 Score=81.67 Aligned_cols=67 Identities=13% Similarity=0.141 Sum_probs=53.8
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
+..+++|||+|+..+......+++.++++|+|+|+++ .-..+....++.... .++|++|++||+|
T Consensus 72 ~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~-----------g~~~~t~~~l~~~~~----~~~p~ilviNKiD 136 (222)
T cd01885 72 EYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVE-----------GVCVQTETVLRQALK----ERVKPVLVINKID 136 (222)
T ss_pred ceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCC-----------CCCHHHHHHHHHHHH----cCCCEEEEEECCC
Confidence 6789999999999999999999999999999999986 223344455555443 2579999999999
Q ss_pred hh
Q psy6623 181 LF 182 (262)
Q Consensus 181 l~ 182 (262)
+.
T Consensus 137 ~~ 138 (222)
T cd01885 137 RL 138 (222)
T ss_pred cc
Confidence 86
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.6e-08 Score=92.09 Aligned_cols=113 Identities=12% Similarity=0.055 Sum_probs=71.7
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
+..+++||++|++.+.+.|......++++|+|+|.++- ....+..+.+..+ . .....|+++++||+|
T Consensus 79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g----------~~~~qt~e~l~~l-~--~~gi~~iIVvvNK~D 145 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEP----------CPQPQTKEHLMAL-E--IIGIKNIVIVQNKID 145 (406)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCC----------ccccchHHHHHHH-H--HcCCCeEEEEEEccc
Confidence 45789999999999999998888899999999999851 1012222223222 1 122357899999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhh---hccceeecccccccceeeeeehhhHHHhh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLK---LFDSICNNKWFTDTSIILFLNKKDLFEEK 243 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~---~~~~~~~~tsA~d~~~I~~~f~~~lL~~~ 243 (262)
+....-.... .+.+.+.+. ...+.++++||++|+||.++++ +|...
T Consensus 146 l~~~~~~~~~---------------~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e--~L~~~ 194 (406)
T TIGR03680 146 LVSKEKALEN---------------YEEIKEFVKGTVAENAPIIPVSALHNANIDALLE--AIEKF 194 (406)
T ss_pred cCCHHHHHHH---------------HHHHHhhhhhcccCCCeEEEEECCCCCChHHHHH--HHHHh
Confidence 8642100000 011111111 1246688999999999999985 44443
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.2e-07 Score=88.41 Aligned_cols=112 Identities=15% Similarity=0.208 Sum_probs=72.3
Q ss_pred EEeeeccceeeeecCCccccchhh-----------hccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 96 HFSFKNLNFKLFDVGGQRSERKKW-----------IHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 96 ~~~~~~~~~~i~D~~Gq~~~r~~w-----------~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
.+..++..+.+|||+|.+.....+ ..+++.++++|+|+|.++ ... .....++..+..
T Consensus 215 ~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~----------~~~-~~~~~i~~~~~~- 282 (435)
T PRK00093 215 PFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATE----------GIT-EQDLRIAGLALE- 282 (435)
T ss_pred EEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCC----------CCC-HHHHHHHHHHHH-
Confidence 344567789999999976543322 246789999999999986 222 223344444433
Q ss_pred CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehh
Q psy6623 165 KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+.|++|++||+|+..+.... .+ .+.+...+.. ..+.++++||++|.||.++|+.
T Consensus 283 ---~~~~~ivv~NK~Dl~~~~~~~-~~--------------~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~ 338 (435)
T PRK00093 283 ---AGRALVIVVNKWDLVDEKTME-EF--------------KKELRRRLPFLDYAPIVFISALTGQGVDKLLEA 338 (435)
T ss_pred ---cCCcEEEEEECccCCCHHHHH-HH--------------HHHHHHhcccccCCCEEEEeCCCCCCHHHHHHH
Confidence 358999999999986321100 00 2223332222 2356889999999999999975
|
|
| >KOG0090|consensus | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.9e-07 Score=77.38 Aligned_cols=111 Identities=22% Similarity=0.317 Sum_probs=79.9
Q ss_pred ccccchhHHHhhccccCCCCCCcCccccceeeecccceeEEEEeeeccceeeeecCCccccchhhhcccc---CCCEEEE
Q psy6623 55 QLNDSAKYFLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFE---DVTAIIF 131 (262)
Q Consensus 55 ~l~d~~~yfl~~l~ri~~~~y~pt~~Dil~~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~---~~~~iIf 131 (262)
.+.||.+.-| .-++....+.+|. +.+--++..+.+++-..++.|.+|+.+-|.+-..||. .+.+|||
T Consensus 45 Gl~dSGKT~L--F~qL~~gs~~~Tv--------tSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF 114 (238)
T KOG0090|consen 45 GLSDSGKTSL--FTQLITGSHRGTV--------TSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF 114 (238)
T ss_pred ecCCCCceee--eeehhcCCccCee--------eeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence 4678877522 1223344555544 2233355666777777899999999999999999997 7999999
Q ss_pred eeeccccccccccCcccccHHHHHHHHHHHHhCC--CCCCCeEEEEeeCCchhhh
Q psy6623 132 CVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK--WFTDTSIILFLNKKDLFEE 184 (262)
Q Consensus 132 v~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~--~~~~~piil~~NK~Dl~~~ 184 (262)
|+|...++ ....+.-+.+-.++.+. .-..+|++|++||+|++..
T Consensus 115 VVDSa~f~---------k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 115 VVDSATFL---------KNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred EEeccccc---------hhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 99999874 55666666666666543 3457899999999999753
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.6e-08 Score=94.56 Aligned_cols=113 Identities=16% Similarity=0.123 Sum_probs=71.2
Q ss_pred EEEeeeccceeeeecCCccc-cchhh----------hccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh
Q psy6623 95 VHFSFKNLNFKLFDVGGQRS-ERKKW----------IHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN 163 (262)
Q Consensus 95 ~~~~~~~~~~~i~D~~Gq~~-~r~~w----------~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~ 163 (262)
..+.+++..+.+|||+|.++ .+..| ..+++.++++|+|+|.++ ..+.+ ...++..+..
T Consensus 491 ~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~----------~~s~~-~~~i~~~~~~ 559 (712)
T PRK09518 491 EIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQ----------PISEQ-DLKVMSMAVD 559 (712)
T ss_pred eEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCC----------CCCHH-HHHHHHHHHH
Confidence 44566778889999999742 22222 234688999999999987 22333 2345555543
Q ss_pred CCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehh
Q psy6623 164 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 164 ~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.++|++||+||+|+..+.... .+ .+.+...+.. .....+++||++|.||.++|+.
T Consensus 560 ----~~~piIiV~NK~DL~~~~~~~-~~--------------~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~ 615 (712)
T PRK09518 560 ----AGRALVLVFNKWDLMDEFRRQ-RL--------------ERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPA 615 (712)
T ss_pred ----cCCCEEEEEEchhcCChhHHH-HH--------------HHHHHHhccCCCCCCEEEEECCCCCCHHHHHHH
Confidence 368999999999986421000 00 1112222211 1123578999999999999985
|
|
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.8e-08 Score=74.87 Aligned_cols=106 Identities=20% Similarity=0.106 Sum_probs=68.1
Q ss_pred ccceeeeecCCccccch-------hhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEE
Q psy6623 101 NLNFKLFDVGGQRSERK-------KWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSII 173 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~-------~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pii 173 (262)
...+.+||++|+..... .+..+++.++++++|+|.++. ....... ++.... ..+.|++
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~----------~~~~~~~-~~~~~~----~~~~~~i 108 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLR----------ADEEEEK-LLELLR----ERGKPVL 108 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCC----------CCHHHHH-HHHHHH----hcCCeEE
Confidence 67899999999877653 444588999999999999972 2222221 222222 2478999
Q ss_pred EEeeCCchhhhhhccCCCcccCCCCCCCCcchhH-HHHHHhhhccceeecccccccceeeeeeh
Q psy6623 174 LFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERN-RMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 174 l~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~-~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+++||+|+..+.-.... .. ............++.+||+++.|+.++++
T Consensus 109 vv~nK~D~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~ 157 (163)
T cd00880 109 LVLNKIDLLPEEEEEEL---------------LELRLLILLLLLGLPVIAVSALTGEGIDELRE 157 (163)
T ss_pred EEEEccccCChhhHHHH---------------HHHHHhhcccccCCceEEEeeeccCCHHHHHH
Confidence 99999998642100000 00 00011111456688899999999998885
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.3e-08 Score=82.49 Aligned_cols=93 Identities=9% Similarity=0.075 Sum_probs=63.0
Q ss_pred cccchhhhccccCCCEEEEeeeccccccccccCcccc-cHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCC
Q psy6623 113 RSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTN-RMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPL 191 (262)
Q Consensus 113 ~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~-~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l 191 (262)
++++.+...|+++++++++|+|+++ .. ++.....|+. .+.. .++|++|++||+||..++...
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~----------p~~s~~~l~r~l~-~~~~---~~i~~vIV~NK~DL~~~~~~~--- 86 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVL----------PELSLNQLDRFLV-VAEA---QNIEPIIVLNKIDLLDDEDME--- 86 (245)
T ss_pred cccceEECcccccCCEEEEEEECCC----------CCCCHHHHHHHHH-HHHH---CCCCEEEEEECcccCCCHHHH---
Confidence 5677788889999999999999997 33 3444333333 3322 478999999999995422100
Q ss_pred cccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 192 TICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 192 ~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
....+.+....+.++++||++|+||+++|+.
T Consensus 87 ---------------~~~~~~~~~~g~~v~~~SAktg~gi~eLf~~ 117 (245)
T TIGR00157 87 ---------------KEQLDIYRNIGYQVLMTSSKNQDGLKELIEA 117 (245)
T ss_pred ---------------HHHHHHHHHCCCeEEEEecCCchhHHHHHhh
Confidence 0111223334466789999999999999963
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.5e-08 Score=79.27 Aligned_cols=76 Identities=24% Similarity=0.379 Sum_probs=56.4
Q ss_pred eccceeeeecCCccccchhhhcc---ccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC--CCCCeEEE
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHC---FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW--FTDTSIIL 174 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~---f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~--~~~~piil 174 (262)
.+..+++.|++|+++.|...... ..++.|||||+|.+.+ ...+.++-+.+-.++.... ...+|++|
T Consensus 47 ~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~---------~~~~~~~Ae~Ly~iL~~~~~~~~~~piLI 117 (181)
T PF09439_consen 47 KGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTD---------QKELRDVAEYLYDILSDTEVQKNKPPILI 117 (181)
T ss_dssp CGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTH---------HHHHHHHHHHHHHHHHHHHCCTT--EEEE
T ss_pred CCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccc---------hhhHHHHHHHHHHHHHhhhhccCCCCEEE
Confidence 45679999999999998855554 7899999999999853 3557777777777776543 35789999
Q ss_pred EeeCCchhhh
Q psy6623 175 FLNKKDLFEE 184 (262)
Q Consensus 175 ~~NK~Dl~~~ 184 (262)
++||+|++..
T Consensus 118 acNK~Dl~~A 127 (181)
T PF09439_consen 118 ACNKQDLFTA 127 (181)
T ss_dssp EEE-TTSTT-
T ss_pred EEeCcccccc
Confidence 9999999864
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.3e-07 Score=73.48 Aligned_cols=114 Identities=20% Similarity=0.148 Sum_probs=76.2
Q ss_pred cccceeEEEEeeeccceeeeecCCccc------cchhhhccc--cCCCEEEEeeeccccccccccCcccccHHHHHHHHH
Q psy6623 88 KTTGIVEVHFSFKNLNFKLFDVGGQRS------ERKKWIHCF--EDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFD 159 (262)
Q Consensus 88 pT~Gi~~~~~~~~~~~~~i~D~~Gq~~------~r~~w~~~f--~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~ 159 (262)
.|+......+.+++..+.+.|++|.-+ ..+.+..|. +..+++|.|+|.+. ++..+.+..
T Consensus 33 ~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~-------------l~r~l~l~~ 99 (156)
T PF02421_consen 33 TTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATN-------------LERNLYLTL 99 (156)
T ss_dssp SSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG-------------HHHHHHHHH
T ss_pred CCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC-------------HHHHHHHHH
Confidence 344455666777889999999999533 233455554 68999999999875 566677777
Q ss_pred HHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 160 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 160 ~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
++... +.|+++++||+|+..++-.... .+.+.+. ..+.+..+||++++|++++.+
T Consensus 100 ql~e~----g~P~vvvlN~~D~a~~~g~~id---------------~~~Ls~~---Lg~pvi~~sa~~~~g~~~L~~ 154 (156)
T PF02421_consen 100 QLLEL----GIPVVVVLNKMDEAERKGIEID---------------AEKLSER---LGVPVIPVSARTGEGIDELKD 154 (156)
T ss_dssp HHHHT----TSSEEEEEETHHHHHHTTEEE----------------HHHHHHH---HTS-EEEEBTTTTBTHHHHHH
T ss_pred HHHHc----CCCEEEEEeCHHHHHHcCCEEC---------------HHHHHHH---hCCCEEEEEeCCCcCHHHHHh
Confidence 77643 6999999999999774311110 2233332 247789999999999998875
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.2e-07 Score=89.95 Aligned_cols=121 Identities=14% Similarity=0.111 Sum_probs=74.5
Q ss_pred ecccceeEEEEee-eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 87 VKTTGIVEVHFSF-KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 87 ~pT~Gi~~~~~~~-~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
..|+.+....+.. ++..+.+|||+|++.+.+.....+.+++++|+|+|..+ .-.....+.+.- +..
T Consensus 35 GiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~e-----------g~~~qT~ehl~i-l~~- 101 (614)
T PRK10512 35 GMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDD-----------GVMAQTREHLAI-LQL- 101 (614)
T ss_pred CceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCC-----------CCcHHHHHHHHH-HHH-
Confidence 3454444334433 35678999999999987766777899999999999875 222333333332 221
Q ss_pred CCCCCeEEEEeeCCchhhh-hhccCCCcccCCCCCCCCcchhHHHHHHhhh---ccceeecccccccceeeeeehh
Q psy6623 166 WFTDTSIILFLNKKDLFEE-KIKKSPLTICFPEYAGKRPGERNRMQESLKL---FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~-kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~---~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
....+++|++||+|+..+ ++... .+-+.+.+.. ....++.+||++|+||..+++.
T Consensus 102 -lgi~~iIVVlNKiDlv~~~~~~~v----------------~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~ 160 (614)
T PRK10512 102 -TGNPMLTVALTKADRVDEARIAEV----------------RRQVKAVLREYGFAEAKLFVTAATEGRGIDALREH 160 (614)
T ss_pred -cCCCeEEEEEECCccCCHHHHHHH----------------HHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHH
Confidence 122346799999998642 11110 1112222211 2245788999999999999864
|
|
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.4e-07 Score=81.85 Aligned_cols=118 Identities=12% Similarity=0.171 Sum_probs=69.7
Q ss_pred Eeeec-cceeeeecCCccccc-------hhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh-CCCC
Q psy6623 97 FSFKN-LNFKLFDVGGQRSER-------KKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN-NKWF 167 (262)
Q Consensus 97 ~~~~~-~~~~i~D~~Gq~~~r-------~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~-~~~~ 167 (262)
+.+.+ .++.++|++|.-.-. .....+++.++++|+|+|++..+. .+.+.+...+.+++.. .+.+
T Consensus 201 v~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~-------~d~~e~~~~l~~eL~~~~~~L 273 (390)
T PRK12298 201 VRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDG-------SDPVENARIIINELEKYSPKL 273 (390)
T ss_pred EEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccc-------cChHHHHHHHHHHHHhhhhhh
Confidence 44443 469999999975321 112235789999999999984321 2333333444444433 2334
Q ss_pred CCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 168 TDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 168 ~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+.|++|++||+|+..+.. +.. ....+.+.+. ....++.+||+++++|.++++.
T Consensus 274 ~~kP~IlVlNKiDl~~~~e----l~~-----------~l~~l~~~~~-~~~~Vi~ISA~tg~GIdeLl~~ 327 (390)
T PRK12298 274 AEKPRWLVFNKIDLLDEEE----AEE-----------RAKAIVEALG-WEGPVYLISAASGLGVKELCWD 327 (390)
T ss_pred cCCCEEEEEeCCccCChHH----HHH-----------HHHHHHHHhC-CCCCEEEEECCCCcCHHHHHHH
Confidence 5789999999999864210 000 0111111111 1124678999999999999963
|
|
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.6e-07 Score=77.08 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=36.8
Q ss_pred ccceeEEEEeeeccceeeeecCCccccc-------hhhhccccCCCEEEEeeecccc
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRSER-------KKWIHCFEDVTAIIFCVAMSEY 138 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~~r-------~~w~~~f~~~~~iIfv~dls~~ 138 (262)
|.......+.+++..+++||++|+.... ..+..++++++++++|+|+++-
T Consensus 34 T~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 34 TLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred cccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcc
Confidence 3334445556788899999999985432 2345689999999999999863
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.7e-07 Score=78.71 Aligned_cols=83 Identities=12% Similarity=0.067 Sum_probs=63.1
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+.-|+......+.+++.++.+|||+|+..+...|..+++.++++|+|+|.++- -.......++.+..
T Consensus 48 rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g-----------~~~~t~~~~~~~~~-- 114 (270)
T cd01886 48 RGITIQSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAG-----------VEPQTETVWRQADR-- 114 (270)
T ss_pred CCcCeeccEEEEEECCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCC-----------CCHHHHHHHHHHHH--
Confidence 34455556677888899999999999999999999999999999999998862 11223344444332
Q ss_pred CCCCCeEEEEeeCCchhh
Q psy6623 166 WFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~ 183 (262)
.++|++++.||+|+.+
T Consensus 115 --~~~p~ivviNK~D~~~ 130 (270)
T cd01886 115 --YNVPRIAFVNKMDRTG 130 (270)
T ss_pred --cCCCEEEEEECCCCCC
Confidence 3589999999999864
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.2e-07 Score=75.18 Aligned_cols=118 Identities=15% Similarity=0.112 Sum_probs=73.0
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.-|+......+..++..+.+.||+|+..+..-...-...++++|+|+|.+. .-.......+..+..
T Consensus 50 g~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~-----------g~~~~~~~~~~~~~~--- 115 (195)
T cd01884 50 GITINTAHVEYETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATD-----------GPMPQTREHLLLARQ--- 115 (195)
T ss_pred CccEEeeeeEecCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCC-----------CCcHHHHHHHHHHHH---
Confidence 334444445566677889999999998876666667788999999999875 111223333433332
Q ss_pred CCCCe-EEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-----ccceeecccccccceeee
Q psy6623 167 FTDTS-IILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-----FDSICNNKWFTDTSIILF 233 (262)
Q Consensus 167 ~~~~p-iil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-----~~~~~~~tsA~d~~~I~~ 233 (262)
.++| ++++.||+|+..+.-....+ .+.+.+.+.. ..+.++++||++|.|+..
T Consensus 116 -~~~~~iIvviNK~D~~~~~~~~~~~--------------~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~~ 173 (195)
T cd01884 116 -VGVPYIVVFLNKADMVDDEELLELV--------------EMEVRELLSKYGFDGDNTPIVRGSALKALEGDD 173 (195)
T ss_pred -cCCCcEEEEEeCCCCCCcHHHHHHH--------------HHHHHHHHHHhcccccCCeEEEeeCccccCCCC
Confidence 2355 78999999985211000000 1222222221 347789999999999854
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=98.44 E-value=2e-07 Score=86.29 Aligned_cols=108 Identities=13% Similarity=0.034 Sum_probs=64.2
Q ss_pred cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCch
Q psy6623 102 LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl 181 (262)
..+++||++|++.+......-..+++++|+|+|+++ .....+....+..+.. ....|+++++||+|+
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~----------~~~~~~t~~~l~~l~~---~~i~~iiVVlNK~Dl 151 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANE----------PCPQPQTKEHLMALDI---IGIKNIVIVQNKIDL 151 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCC----------CCCChhHHHHHHHHHH---cCCCcEEEEEEeecc
Confidence 578999999998876544444455799999999985 1101222222222211 123478999999998
Q ss_pred hhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh---ccceeecccccccceeeeeehh
Q psy6623 182 FEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL---FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 182 ~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~---~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
..+.- .... .+.+...+.. ..+.++.+||++|+||.++++.
T Consensus 152 ~~~~~----~~~~-----------~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~ 195 (411)
T PRK04000 152 VSKER----ALEN-----------YEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEA 195 (411)
T ss_pred ccchh----HHHH-----------HHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHH
Confidence 64210 0000 1111111111 2356788999999999999953
|
|
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.2e-06 Score=69.31 Aligned_cols=104 Identities=21% Similarity=0.139 Sum_probs=65.1
Q ss_pred eccceeeeecCCccccch--------hhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCe
Q psy6623 100 KNLNFKLFDVGGQRSERK--------KWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTS 171 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~--------~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~p 171 (262)
.+..+.+||++|...... .+..++.+++++++|+|.++.. .... ....+.+.. .+.|
T Consensus 49 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~--------~~~~---~~~~~~~~~----~~~~ 113 (168)
T cd04163 49 DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPI--------GEGD---EFILELLKK----SKTP 113 (168)
T ss_pred CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCcc--------CchH---HHHHHHHHH----hCCC
Confidence 457889999999765433 3345688999999999998720 1111 122222222 1589
Q ss_pred EEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh--ccceeecccccccceeeeeeh
Q psy6623 172 IILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL--FDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 172 iil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~--~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+++++||+|+..... . .......+.. ....++.+||+++.++.++|+
T Consensus 114 ~iiv~nK~Dl~~~~~---~---------------~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~ 162 (168)
T cd04163 114 VILVLNKIDLVKDKE---D---------------LLPLLEKLKELGPFAEIFPISALKGENVDELLE 162 (168)
T ss_pred EEEEEEchhccccHH---H---------------HHHHHHHHHhccCCCceEEEEeccCCChHHHHH
Confidence 999999999863110 0 1111112222 124578899999999999885
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.1e-06 Score=76.67 Aligned_cols=83 Identities=17% Similarity=0.145 Sum_probs=63.1
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+..|+......+.+++..+.+|||+|+..+...+..+++.++++|+|+|.++- ........|+.+..
T Consensus 48 r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g-----------~~~~~~~~~~~~~~-- 114 (268)
T cd04170 48 RKMSISTSVAPLEWKGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSG-----------VEVGTEKLWEFADE-- 114 (268)
T ss_pred hcccccceeEEEEECCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCC-----------CCHHHHHHHHHHHH--
Confidence 45566666677788889999999999998888899999999999999999862 11223344443322
Q ss_pred CCCCCeEEEEeeCCchhh
Q psy6623 166 WFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~ 183 (262)
.+.|+++++||+|+..
T Consensus 115 --~~~p~iivvNK~D~~~ 130 (268)
T cd04170 115 --AGIPRIIFINKMDRER 130 (268)
T ss_pred --cCCCEEEEEECCccCC
Confidence 3689999999999864
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.9e-07 Score=75.24 Aligned_cols=67 Identities=16% Similarity=0.224 Sum_probs=51.5
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
...+++|||+|+..+...+..++..++++|+|+|.++ .... ....+++.... .+.|+++++||+|
T Consensus 70 ~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~----------~~~~-~~~~~~~~~~~----~~~p~iiviNK~D 134 (213)
T cd04167 70 SYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVE----------GVTS-NTERLIRHAIL----EGLPIVLVINKID 134 (213)
T ss_pred EEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCC----------CCCH-HHHHHHHHHHH----cCCCEEEEEECcc
Confidence 4789999999999999899999999999999999986 2222 22333333322 3489999999999
Q ss_pred hh
Q psy6623 181 LF 182 (262)
Q Consensus 181 l~ 182 (262)
+.
T Consensus 135 ~~ 136 (213)
T cd04167 135 RL 136 (213)
T ss_pred cC
Confidence 75
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.1e-07 Score=87.66 Aligned_cols=64 Identities=14% Similarity=0.125 Sum_probs=48.8
Q ss_pred eeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchh
Q psy6623 104 FKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182 (262)
Q Consensus 104 ~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~ 182 (262)
+.+|||+|++.|+.+|...+..++++|+|+|.++- ...++...+..+.. .++|+++++||+|+.
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g-----------~~~qt~e~i~~~~~----~~vpiIvviNK~D~~ 136 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEG-----------FQPQTIEAINILKR----RKTPFVVAANKIDRI 136 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCC-----------CCHhHHHHHHHHHH----cCCCEEEEEECcCCc
Confidence 68999999999999999999999999999998861 11222223322221 368999999999985
|
|
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.9e-07 Score=85.53 Aligned_cols=82 Identities=18% Similarity=0.311 Sum_probs=61.0
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
..|+......+.+++.++++|||+|+..+......+++.++++|+|+|.++ . -......+++. +.
T Consensus 64 giSi~~~~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~----------g-v~~~t~~l~~~-~~--- 128 (526)
T PRK00741 64 GISVTSSVMQFPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAK----------G-VEPQTRKLMEV-CR--- 128 (526)
T ss_pred CCceeeeeEEEEECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCC----------C-CCHHHHHHHHH-HH---
Confidence 344445556788889999999999999998877788999999999999986 1 11223334433 22
Q ss_pred CCCCeEEEEeeCCchhh
Q psy6623 167 FTDTSIILFLNKKDLFE 183 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~ 183 (262)
..++|+++|+||+|+..
T Consensus 129 ~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 129 LRDTPIFTFINKLDRDG 145 (526)
T ss_pred hcCCCEEEEEECCcccc
Confidence 24789999999999854
|
|
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.5e-07 Score=88.65 Aligned_cols=84 Identities=12% Similarity=0.130 Sum_probs=67.0
Q ss_pred eeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 85 ~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
.+..|++.....+.+++..+++|||+|+..+...+..+++.++++|+|+|.++ ... ......|+.+..
T Consensus 56 ~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~----------~~~-~~~~~~~~~~~~- 123 (687)
T PRK13351 56 ERGITIESAATSCDWDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVT----------GVQ-PQTETVWRQADR- 123 (687)
T ss_pred hcCCCcccceEEEEECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCC----------CCC-HHHHHHHHHHHh-
Confidence 46778887777888899999999999999999999999999999999999986 222 223344444332
Q ss_pred CCCCCCeEEEEeeCCchhh
Q psy6623 165 KWFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~~ 183 (262)
.++|+++++||+|+..
T Consensus 124 ---~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 124 ---YGIPRLIFINKMDRVG 139 (687)
T ss_pred ---cCCCEEEEEECCCCCC
Confidence 3689999999999875
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.9e-07 Score=79.31 Aligned_cols=115 Identities=17% Similarity=0.180 Sum_probs=69.6
Q ss_pred eccceeeeecCCccccch--------hhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCe
Q psy6623 100 KNLNFKLFDVGGQRSERK--------KWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTS 171 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~--------~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~p 171 (262)
++..+.+|||+|....+. .+...+.+++++++|+|.++. +.+....+...+.. .+.|
T Consensus 51 ~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~------------~~~~~~~i~~~l~~---~~~p 115 (292)
T PRK00089 51 DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEK------------IGPGDEFILEKLKK---VKTP 115 (292)
T ss_pred CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCC------------CChhHHHHHHHHhh---cCCC
Confidence 457899999999754332 233467899999999998861 11122222222221 3589
Q ss_pred EEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhccCC
Q psy6623 172 IILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 247 (262)
Q Consensus 172 iil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~~~ 247 (262)
+++++||+|+...+-...+. .+.+.+.+ ....++.+||+++.|+.++++ +|...+..+
T Consensus 116 vilVlNKiDl~~~~~~l~~~--------------~~~l~~~~--~~~~i~~iSA~~~~gv~~L~~--~L~~~l~~~ 173 (292)
T PRK00089 116 VILVLNKIDLVKDKEELLPL--------------LEELSELM--DFAEIVPISALKGDNVDELLD--VIAKYLPEG 173 (292)
T ss_pred EEEEEECCcCCCCHHHHHHH--------------HHHHHhhC--CCCeEEEecCCCCCCHHHHHH--HHHHhCCCC
Confidence 99999999996311000000 11111111 124577899999999999994 566665543
|
|
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=1e-06 Score=89.13 Aligned_cols=64 Identities=16% Similarity=0.153 Sum_probs=47.8
Q ss_pred eeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchh
Q psy6623 104 FKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182 (262)
Q Consensus 104 ~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~ 182 (262)
+.+|||+|++.+..+....+..++++|+|+|+++-- .....+++.. +.. .++|+++++||+|+.
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi--------~~qT~e~I~~---lk~----~~iPiIVViNKiDL~ 591 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGF--------KPQTIEAINI---LRQ----YKTPFVVAANKIDLI 591 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccC--------CHhHHHHHHH---HHH----cCCCEEEEEECCCCc
Confidence 799999999999888888889999999999988510 1122223332 222 257999999999985
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.9e-06 Score=80.61 Aligned_cols=129 Identities=14% Similarity=0.015 Sum_probs=76.9
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+.-|+.+....+..++..+++.|++|++.|.+.....+..++++|+|+|.++ ..+ |. .........+.+.-. ..
T Consensus 69 rGiTi~~~~~~~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~--e~-g~~~~~qT~eh~~~~-~~- 142 (447)
T PLN00043 69 RGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGF--EA-GISKDGQTREHALLA-FT- 142 (447)
T ss_pred cCceEEEEEEEecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-Cce--ec-ccCCCchHHHHHHHH-HH-
Confidence 3445555566677788899999999999999888889999999999999985 000 00 000011223333222 11
Q ss_pred CCCCC-eEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-----ccceeecccccccceeee
Q psy6623 166 WFTDT-SIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-----FDSICNNKWFTDTSIILF 233 (262)
Q Consensus 166 ~~~~~-piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-----~~~~~~~tsA~d~~~I~~ 233 (262)
.++ +++|+.||+|+.........+.. ..+-+...+.. ..+.+.++||.+|+||.+
T Consensus 143 --~gi~~iIV~vNKmD~~~~~~~~~~~~~-----------i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 143 --LGVKQMICCCNKMDATTPKYSKARYDE-----------IVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred --cCCCcEEEEEEcccCCchhhhHHHHHH-----------HHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 245 57889999997521000000000 01112222221 246788999999999964
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.7e-06 Score=82.37 Aligned_cols=79 Identities=18% Similarity=0.270 Sum_probs=57.4
Q ss_pred ccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCC
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFT 168 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~ 168 (262)
|+......+.+++..+++|||+|+..+......+++.++++|+|+|.++- -......+++ ++.. .
T Consensus 67 si~~~~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g-----------v~~~t~~l~~-~~~~---~ 131 (527)
T TIGR00503 67 SITTSVMQFPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKG-----------VETRTRKLME-VTRL---R 131 (527)
T ss_pred cEEEEEEEEeeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCC-----------CCHHHHHHHH-HHHh---c
Confidence 33344466777899999999999998877666678999999999998861 1112233333 3322 4
Q ss_pred CCeEEEEeeCCchh
Q psy6623 169 DTSIILFLNKKDLF 182 (262)
Q Consensus 169 ~~piil~~NK~Dl~ 182 (262)
++|+++|+||+|+.
T Consensus 132 ~~PiivviNKiD~~ 145 (527)
T TIGR00503 132 DTPIFTFMNKLDRD 145 (527)
T ss_pred CCCEEEEEECcccc
Confidence 68999999999985
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >KOG0462|consensus | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.5e-06 Score=79.52 Aligned_cols=146 Identities=18% Similarity=0.105 Sum_probs=95.2
Q ss_pred hHHHhhccccCC---C-CCCcCccccc---eeeecccceeEEEEeeec---cceeeeecCCccccchhhhccccCCCEEE
Q psy6623 61 KYFLDDLDRLGA---K-EYQPTEQDIL---RTRVKTTGIVEVHFSFKN---LNFKLFDVGGQRSERKKWIHCFEDVTAII 130 (262)
Q Consensus 61 ~yfl~~l~ri~~---~-~y~pt~~Dil---~~~~pT~Gi~~~~~~~~~---~~~~i~D~~Gq~~~r~~w~~~f~~~~~iI 130 (262)
..+.+++-+++. + ...+..-|-+ |.|--|+-.....+.+++ ..+++.||+|+--|+.--..-+.-|+|+|
T Consensus 74 STLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~l 153 (650)
T KOG0462|consen 74 STLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGEVSRSLAACDGAL 153 (650)
T ss_pred chHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccceehehhhhcCceE
Confidence 356677777765 1 1122222222 234444444555566666 88999999999998887788888999999
Q ss_pred EeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHH
Q psy6623 131 FCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQ 210 (262)
Q Consensus 131 fv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~ 210 (262)
+|||.+. --..+.+.-|....+ .+..+|.|+||+|++.+..... ..-+.
T Consensus 154 LvVDA~q-----------GvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adpe~V----------------~~q~~ 202 (650)
T KOG0462|consen 154 LVVDASQ-----------GVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADPERV----------------ENQLF 202 (650)
T ss_pred EEEEcCc-----------CchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCHHHH----------------HHHHH
Confidence 9999986 344445444444443 2577899999999986432211 22333
Q ss_pred HHhhhccceeecccccccceeeeeehh
Q psy6623 211 ESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 211 ~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+.|..-.--+..+|||.|.|+.+++.+
T Consensus 203 ~lF~~~~~~~i~vSAK~G~~v~~lL~A 229 (650)
T KOG0462|consen 203 ELFDIPPAEVIYVSAKTGLNVEELLEA 229 (650)
T ss_pred HHhcCCccceEEEEeccCccHHHHHHH
Confidence 444333334667999999999997754
|
|
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=98.20 E-value=3e-06 Score=78.36 Aligned_cols=124 Identities=11% Similarity=0.047 Sum_probs=72.1
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
|.-|+......+..++.++.++||+|++.|-+....-...++++|+|+|.+. .-.....+.+.-+.
T Consensus 64 rgiTid~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~-----------G~~~qt~~~~~~~~--- 129 (406)
T TIGR02034 64 QGITIDVAYRYFSTDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARK-----------GVLEQTRRHSYIAS--- 129 (406)
T ss_pred CCcCeEeeeEEEccCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCC-----------CCccccHHHHHHHH---
Confidence 3445555566677778899999999999886555556789999999999875 11111122222111
Q ss_pred CCCCCeEEEEeeCCchhhhhhcc-CCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeee
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKK-SPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFL 234 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~-~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~ 234 (262)
.+...+++|+.||+|+....-.. ..+...+ .+++. ++.-..+.+.++||++|+||...
T Consensus 130 ~~~~~~iivviNK~D~~~~~~~~~~~i~~~~----------~~~~~-~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 130 LLGIRHVVLAVNKMDLVDYDEEVFENIKKDY----------LAFAE-QLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred HcCCCcEEEEEEecccccchHHHHHHHHHHH----------HHHHH-HcCCCCccEEEeecccCCCCccc
Confidence 11234689999999985311000 0000000 11111 11112355788999999999864
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.9e-06 Score=70.83 Aligned_cols=125 Identities=10% Similarity=0.006 Sum_probs=70.5
Q ss_pred EEeeeccceeeeecCCccccchhhhcccc--CCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEE
Q psy6623 96 HFSFKNLNFKLFDVGGQRSERKKWIHCFE--DVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSII 173 (262)
Q Consensus 96 ~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~--~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pii 173 (262)
.+..++..+++.|++|++.+.+-...... .++++++|+|... .-......++..+.. .+.|++
T Consensus 78 ~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~-----------g~~~~d~~~l~~l~~----~~ip~i 142 (224)
T cd04165 78 ICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANA-----------GIIGMTKEHLGLALA----LNIPVF 142 (224)
T ss_pred eeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCC-----------CCcHHHHHHHHHHHH----cCCCEE
Confidence 34456778999999999888654444443 5899999999764 112333344443332 257899
Q ss_pred EEeeCCchhhh-hhcc--CCCcccCCCCCCCC--------cch-hHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 174 LFLNKKDLFEE-KIKK--SPLTICFPEYAGKR--------PGE-RNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 174 l~~NK~Dl~~~-kl~~--~~l~~~fp~~~g~~--------~~~-~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+++||+|+..+ ++.. ..+...+. -.|.. ..+ .....+.-....+.++.+||.+|+|++++..
T Consensus 143 vvvNK~D~~~~~~~~~~~~~l~~~L~-~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~ 216 (224)
T cd04165 143 VVVTKIDLAPANILQETLKDLKRILK-VPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHA 216 (224)
T ss_pred EEEECccccCHHHHHHHHHHHHHHhc-CCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHH
Confidence 99999998542 1111 01111110 00100 000 1111111111345788999999999988774
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.8e-06 Score=82.73 Aligned_cols=82 Identities=12% Similarity=0.086 Sum_probs=62.2
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.-|+-.....+.+++.++.+|||+|+..+...+..+++.++++|+|+|.++ ... .+....+..+..
T Consensus 60 giti~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~----------g~~-~~~~~~~~~~~~--- 125 (689)
T TIGR00484 60 GITITSAATTVFWKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVG----------GVQ-PQSETVWRQANR--- 125 (689)
T ss_pred CCCEecceEEEEECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCC----------CCC-hhHHHHHHHHHH---
Confidence 345555567778889999999999999988889999999999999999886 111 223344443332
Q ss_pred CCCCeEEEEeeCCchhh
Q psy6623 167 FTDTSIILFLNKKDLFE 183 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~ 183 (262)
.++|++|++||+|+..
T Consensus 126 -~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 126 -YEVPRIAFVNKMDKTG 141 (689)
T ss_pred -cCCCEEEEEECCCCCC
Confidence 3589999999999864
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=98.15 E-value=5.7e-06 Score=76.26 Aligned_cols=81 Identities=20% Similarity=0.281 Sum_probs=52.0
Q ss_pred cccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 88 KTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 88 pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
-|+......+..++.++.+|||+|++.|.+....-...++++|+|+|..+ .-.....+.+..+...
T Consensus 61 ~Ti~~~~~~~~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~-----------g~~~qt~e~l~~~~~~--- 126 (394)
T TIGR00485 61 ITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATD-----------GPMPQTREHILLARQV--- 126 (394)
T ss_pred cceeeEEEEEcCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCC-----------CCcHHHHHHHHHHHHc---
Confidence 34444444454466789999999998876544444566799999999875 1223334444443322
Q ss_pred CCCe-EEEEeeCCchhh
Q psy6623 168 TDTS-IILFLNKKDLFE 183 (262)
Q Consensus 168 ~~~p-iil~~NK~Dl~~ 183 (262)
++| +++++||+|+..
T Consensus 127 -gi~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 127 -GVPYIVVFLNKCDMVD 142 (394)
T ss_pred -CCCEEEEEEEecccCC
Confidence 455 457899999864
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.3e-06 Score=81.77 Aligned_cols=109 Identities=21% Similarity=0.141 Sum_probs=71.4
Q ss_pred EEEEeeeccceeeeecCCccccchh----------hhccc--cCCCEEEEeeeccccccccccCcccccHHHHHHHHHHH
Q psy6623 94 EVHFSFKNLNFKLFDVGGQRSERKK----------WIHCF--EDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSI 161 (262)
Q Consensus 94 ~~~~~~~~~~~~i~D~~Gq~~~r~~----------w~~~f--~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i 161 (262)
...+..++.++++||++|+.++... ...|+ +.++++|+|+|.++ .++ .+.++.++
T Consensus 42 ~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~----------ler---~l~l~~ql 108 (772)
T PRK09554 42 EGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN----------LER---NLYLTLQL 108 (772)
T ss_pred EEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCc----------chh---hHHHHHHH
Confidence 3445667789999999999776431 33343 47999999999887 222 23344444
Q ss_pred HhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 162 CNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 162 ~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+ .+.|+++++||+|+.+++-... +.+-+.++ ..+.+..+||++|+||+++.+.
T Consensus 109 ~e----~giPvIvVlNK~Dl~~~~~i~i---------------d~~~L~~~---LG~pVvpiSA~~g~GIdeL~~~ 162 (772)
T PRK09554 109 LE----LGIPCIVALNMLDIAEKQNIRI---------------DIDALSAR---LGCPVIPLVSTRGRGIEALKLA 162 (772)
T ss_pred HH----cCCCEEEEEEchhhhhccCcHH---------------HHHHHHHH---hCCCEEEEEeecCCCHHHHHHH
Confidence 43 2689999999999864321000 01222222 3456788999999999988764
|
|
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.4e-06 Score=82.09 Aligned_cols=84 Identities=13% Similarity=0.111 Sum_probs=66.4
Q ss_pred eeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 85 ~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
.+..|++.....+.+++..+.+|||+|+..+...|..+++.++++|+|+|.++- . .......+..+..
T Consensus 43 ~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~----------~-~~~~~~~~~~~~~- 110 (668)
T PRK12740 43 ERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGG----------V-EPQTETVWRQAEK- 110 (668)
T ss_pred hcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCC----------c-CHHHHHHHHHHHH-
Confidence 456788888888889999999999999998888899999999999999999861 1 2233344444432
Q ss_pred CCCCCCeEEEEeeCCchhh
Q psy6623 165 KWFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~~ 183 (262)
.+.|+++++||+|+..
T Consensus 111 ---~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 111 ---YGVPRIIFVNKMDRAG 126 (668)
T ss_pred ---cCCCEEEEEECCCCCC
Confidence 3689999999999864
|
|
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.12 E-value=9.2e-06 Score=75.72 Aligned_cols=110 Identities=17% Similarity=0.048 Sum_probs=74.5
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.-.+.+.||+|++.|-.+...-..=+|.+|+|+|..| .-..+..|++...+ -.++|++|..||+|
T Consensus 54 ~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dD--------Gv~pQTiEAI~hak-------~a~vP~iVAiNKiD 118 (509)
T COG0532 54 IPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADD--------GVMPQTIEAINHAK-------AAGVPIVVAINKID 118 (509)
T ss_pred CceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccC--------CcchhHHHHHHHHH-------HCCCCEEEEEeccc
Confidence 4578999999999999999888888999999999986 11233344444332 24799999999999
Q ss_pred hhhhhhcc--CCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhh
Q psy6623 181 LFEEKIKK--SPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 238 (262)
Q Consensus 181 l~~~kl~~--~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~ 238 (262)
.+.....+ .++..+ | +.-+.+. +.+.+..+||++|+||.++...-
T Consensus 119 k~~~np~~v~~el~~~-----g-------l~~E~~g-g~v~~VpvSA~tg~Gi~eLL~~i 165 (509)
T COG0532 119 KPEANPDKVKQELQEY-----G-------LVPEEWG-GDVIFVPVSAKTGEGIDELLELI 165 (509)
T ss_pred CCCCCHHHHHHHHHHc-----C-------CCHhhcC-CceEEEEeeccCCCCHHHHHHHH
Confidence 87421110 111110 1 0001111 44678899999999999999863
|
|
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.8e-06 Score=78.52 Aligned_cols=123 Identities=11% Similarity=0.059 Sum_probs=71.9
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
|.-|+......+..++..+.++||+|++.+.+....-...++++|+|+|...-- .....+...+.. .+
T Consensus 91 rgiTid~~~~~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~--------~~qt~~~~~l~~-~l--- 158 (474)
T PRK05124 91 QGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGV--------LDQTRRHSFIAT-LL--- 158 (474)
T ss_pred cCCCeEeeEEEeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCc--------cccchHHHHHHH-Hh---
Confidence 344554555566677889999999999888655555568999999999987510 011111111111 11
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHH---Hhh-hccceeecccccccceeeeee
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQE---SLK-LFDSICNNKWFTDTSIILFLN 235 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~---~f~-~~~~~~~~tsA~d~~~I~~~f 235 (262)
...+++|++||+|+.+.. ...+... .+.+.. ++. .....++++||++|+||...-
T Consensus 159 --g~~~iIvvvNKiD~~~~~--~~~~~~i-----------~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 159 --GIKHLVVAVNKMDLVDYS--EEVFERI-----------REDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred --CCCceEEEEEeeccccch--hHHHHHH-----------HHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 224789999999986311 0000000 111111 111 123567899999999998653
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.1e-05 Score=63.80 Aligned_cols=104 Identities=16% Similarity=0.128 Sum_probs=60.4
Q ss_pred ceeeeecCCc----------cccchhhhcccc---CCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCC
Q psy6623 103 NFKLFDVGGQ----------RSERKKWIHCFE---DVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTD 169 (262)
Q Consensus 103 ~~~i~D~~Gq----------~~~r~~w~~~f~---~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~ 169 (262)
.+.+||++|. +.++..+..|+. +++++++++|..... .....+...++.. .+
T Consensus 46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~--------~~~~~~~~~~l~~-------~~ 110 (170)
T cd01876 46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGP--------TEIDLEMLDWLEE-------LG 110 (170)
T ss_pred eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCC--------CHhHHHHHHHHHH-------cC
Confidence 8899999993 334555556664 457888898887510 0111122223222 14
Q ss_pred CeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhh--hccceeecccccccceeeeeeh
Q psy6623 170 TSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLK--LFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 170 ~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~--~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
.|+++++||+|+........ . ..-+..... .....++++||+++.++.++++
T Consensus 111 ~~vi~v~nK~D~~~~~~~~~-~--------------~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~ 164 (170)
T cd01876 111 IPFLVVLTKADKLKKSELAK-A--------------LKEIKKELKLFEIDPPIILFSSLKGQGIDELRA 164 (170)
T ss_pred CCEEEEEEchhcCChHHHHH-H--------------HHHHHHHHHhccCCCceEEEecCCCCCHHHHHH
Confidence 79999999999853210000 0 111111111 1335577999999999999884
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.1e-05 Score=74.36 Aligned_cols=79 Identities=20% Similarity=0.292 Sum_probs=52.8
Q ss_pred ccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCC
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFT 168 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~ 168 (262)
|+......+..++..+.++||+|++.|.+....-...++++|+|+|.++ .-.....+.+..+.. .
T Consensus 62 T~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~-----------g~~~~t~~~~~~~~~----~ 126 (394)
T PRK12736 62 TINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATD-----------GPMPQTREHILLARQ----V 126 (394)
T ss_pred cEEEEeeEecCCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCC-----------CCchhHHHHHHHHHH----c
Confidence 3333334444466788999999998876655555677899999999875 122333444443332 2
Q ss_pred CCe-EEEEeeCCchh
Q psy6623 169 DTS-IILFLNKKDLF 182 (262)
Q Consensus 169 ~~p-iil~~NK~Dl~ 182 (262)
++| ++|++||+|+.
T Consensus 127 g~~~~IvviNK~D~~ 141 (394)
T PRK12736 127 GVPYLVVFLNKVDLV 141 (394)
T ss_pred CCCEEEEEEEecCCc
Confidence 466 78899999986
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=4.3e-06 Score=72.45 Aligned_cols=130 Identities=16% Similarity=0.078 Sum_probs=69.7
Q ss_pred cceeeeecCCccc---cchhhhccccC-----CCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEE
Q psy6623 102 LNFKLFDVGGQRS---ERKKWIHCFED-----VTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSII 173 (262)
Q Consensus 102 ~~~~i~D~~Gq~~---~r~~w~~~f~~-----~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pii 173 (262)
..+.+||++|+.. ++..|..+++. .++++||+|.+.... ...+.. ..++...... ..+.|++
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~-------~~d~~~-~~~l~~~~~~--~~~~~~i 166 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKT-------PSDFVS-LLLLALSVQL--RLGLPQI 166 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCC-------HHHHHH-HHHHHHHHHH--HcCCCEE
Confidence 3678999999866 46677665544 789999999975110 111111 1222211111 1368999
Q ss_pred EEeeCCchhhhhhccCCCcccCCC----------CCCCCcch-hHHHHHHhhhc--cceeecccccccceeeeeehhhHH
Q psy6623 174 LFLNKKDLFEEKIKKSPLTICFPE----------YAGKRPGE-RNRMQESLKLF--DSICNNKWFTDTSIILFLNKKDLF 240 (262)
Q Consensus 174 l~~NK~Dl~~~kl~~~~l~~~fp~----------~~g~~~~~-~~~i~~~f~~~--~~~~~~tsA~d~~~I~~~f~~~lL 240 (262)
+++||+|+..+.-. ..+..++.+ -.|.. .. ..-+.+.+.+. ...++.+||+++++++++. .++
T Consensus 167 ~v~nK~D~~~~~~~-~~~~~~l~~~~~~~~~l~~~~~~~-~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~--~~I 242 (253)
T PRK13768 167 PVLNKADLLSEEEL-ERILKWLEDPEYLLEELKLEKGLQ-GLLSLELLRALEETGLPVRVIPVSAKTGEGFDELY--AAI 242 (253)
T ss_pred EEEEhHhhcCchhH-HHHHHHHhCHHHHHHHHhcccchH-HHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHH--HHH
Confidence 99999998643111 001111110 00111 01 11111122221 2356789999999999988 456
Q ss_pred Hhhcc
Q psy6623 241 EEKIK 245 (262)
Q Consensus 241 ~~~i~ 245 (262)
.+.+.
T Consensus 243 ~~~l~ 247 (253)
T PRK13768 243 QEVFC 247 (253)
T ss_pred HHHcC
Confidence 55543
|
|
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.7e-05 Score=77.44 Aligned_cols=121 Identities=12% Similarity=0.050 Sum_probs=70.4
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
--|+-.....+..++.++.++||+|++.+-..-..-...+|++|+|+|.++-- .....+...+...
T Consensus 89 g~Tid~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~--------~~~t~e~~~~~~~------ 154 (632)
T PRK05506 89 GITIDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGV--------LTQTRRHSFIASL------ 154 (632)
T ss_pred CcCceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCc--------cccCHHHHHHHHH------
Confidence 34444455566777889999999999887655555678899999999986410 1111122222211
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHH---HHhhhccceeecccccccceeeee
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQ---ESLKLFDSICNNKWFTDTSIILFL 234 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~---~~f~~~~~~~~~tsA~d~~~I~~~ 234 (262)
....+++|++||+|+.... ...+... ...+. .++.-..+.++++||++|.||...
T Consensus 155 ~~~~~iivvvNK~D~~~~~--~~~~~~i-----------~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~~ 212 (632)
T PRK05506 155 LGIRHVVLAVNKMDLVDYD--QEVFDEI-----------VADYRAFAAKLGLHDVTFIPISALKGDNVVTR 212 (632)
T ss_pred hCCCeEEEEEEecccccch--hHHHHHH-----------HHHHHHHHHHcCCCCccEEEEecccCCCcccc
Confidence 1235789999999985310 0000000 01111 111112345788999999999853
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.2e-06 Score=76.95 Aligned_cols=95 Identities=14% Similarity=0.106 Sum_probs=62.6
Q ss_pred ccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCC
Q psy6623 112 QRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPL 191 (262)
Q Consensus 112 q~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l 191 (262)
++.++.+...+++++++|++|+|+.++. .++ ...+...+ .+.|++|++||+|+..+......+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~---------~s~---~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~ 112 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE---------GSL---IPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKI 112 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC---------CCc---cHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHH
Confidence 5678888888999999999999998743 111 12222222 257999999999996421110000
Q ss_pred cccCCCCCCCCcchhHHHHHHhhhccc---eeecccccccceeeeeehh
Q psy6623 192 TICFPEYAGKRPGERNRMQESLKLFDS---ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 192 ~~~fp~~~g~~~~~~~~i~~~f~~~~~---~~~~tsA~d~~~I~~~f~~ 237 (262)
.+++.+.+....+ .++.+||++|.||.++|+.
T Consensus 113 --------------~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~ 147 (360)
T TIGR03597 113 --------------KEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDK 147 (360)
T ss_pred --------------HHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHH
Confidence 3444444443333 3778999999999999863
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.7e-05 Score=74.31 Aligned_cols=128 Identities=15% Similarity=0.044 Sum_probs=74.2
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
--|+.+....+..++..+++.|++|++.|-+........++++|+|+|.++=- .|.. ...-....+.+..+..
T Consensus 70 GiTid~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~---~e~~-~~~~~qT~eh~~~~~~--- 142 (446)
T PTZ00141 70 GITIDIALWKFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGE---FEAG-ISKDGQTREHALLAFT--- 142 (446)
T ss_pred CEeEEeeeEEEccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCc---eecc-cCCCccHHHHHHHHHH---
Confidence 34444555667778889999999999999887777788999999999987500 0000 0000122333332221
Q ss_pred CCCC-eEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-----ccceeecccccccceeee
Q psy6623 167 FTDT-SIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-----FDSICNNKWFTDTSIILF 233 (262)
Q Consensus 167 ~~~~-piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-----~~~~~~~tsA~d~~~I~~ 233 (262)
.++ .++++.||+|...-.-....+... .+-+...+.. ..+.+.++||.+|+||.+
T Consensus 143 -~gi~~iiv~vNKmD~~~~~~~~~~~~~i-----------~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 143 -LGVKQMIVCINKMDDKTVNYSQERYDEI-----------KKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred -cCCCeEEEEEEccccccchhhHHHHHHH-----------HHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 244 478999999953200000000000 1122222221 347788999999999964
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.3e-06 Score=69.06 Aligned_cols=92 Identities=11% Similarity=0.004 Sum_probs=56.1
Q ss_pred cchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCccc
Q psy6623 115 ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 194 (262)
Q Consensus 115 ~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~ 194 (262)
++..+..+++++++||+|+|+++.+. ...+.+ .. ...+.|+++++||+|+..+......+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~---------~~~~~l------~~--~~~~~~~ilV~NK~Dl~~~~~~~~~~--- 83 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG---------SLIPRL------RL--FGGNNPVILVGNKIDLLPKDKNLVRI--- 83 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC---------ccchhH------HH--hcCCCcEEEEEEchhcCCCCCCHHHH---
Confidence 68899999999999999999987321 111111 11 12467999999999985321000000
Q ss_pred CCCCCCCCcchhHHHH-HHhhhcc---ceeecccccccceeeeeehh
Q psy6623 195 FPEYAGKRPGERNRMQ-ESLKLFD---SICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 195 fp~~~g~~~~~~~~i~-~~f~~~~---~~~~~tsA~d~~~I~~~f~~ 237 (262)
..+.. ..+.... ..++.+||++|.||+++++.
T Consensus 84 -----------~~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~ 119 (190)
T cd01855 84 -----------KNWLRAKAAAGLGLKPKDVILISAKKGWGVEELINA 119 (190)
T ss_pred -----------HHHHHHHHHhhcCCCcccEEEEECCCCCCHHHHHHH
Confidence 11210 0011111 13678999999999999863
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.1e-05 Score=74.46 Aligned_cols=80 Identities=20% Similarity=0.273 Sum_probs=51.3
Q ss_pred ccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCC
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFT 168 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~ 168 (262)
|+......+..++..+.++||+|++.|.+.-..-..+++++|+|+|..+ .-.....+.+..+.. .
T Consensus 62 T~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~-----------g~~~qt~e~l~~~~~----~ 126 (396)
T PRK12735 62 TINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAAD-----------GPMPQTREHILLARQ----V 126 (396)
T ss_pred eEEEeeeEEcCCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCC-----------CCchhHHHHHHHHHH----c
Confidence 3333334455566788999999998775555555678899999999875 112223333333321 2
Q ss_pred CCeEE-EEeeCCchhh
Q psy6623 169 DTSII-LFLNKKDLFE 183 (262)
Q Consensus 169 ~~pii-l~~NK~Dl~~ 183 (262)
++|.+ +++||+|+..
T Consensus 127 gi~~iivvvNK~Dl~~ 142 (396)
T PRK12735 127 GVPYIVVFLNKCDMVD 142 (396)
T ss_pred CCCeEEEEEEecCCcc
Confidence 46754 6799999863
|
|
| >KOG1144|consensus | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.3e-05 Score=76.98 Aligned_cols=117 Identities=16% Similarity=0.052 Sum_probs=76.6
Q ss_pred eeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhh
Q psy6623 104 FKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 104 ~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~ 183 (262)
+-+.||.|+++|..+....-..|+.+|+|+|+..= . .....+++.+++. .++|+||.+||+|.+=
T Consensus 542 ~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhG----l----epqtiESi~lLR~-------rktpFivALNKiDRLY 606 (1064)
T KOG1144|consen 542 LLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHG----L----EPQTIESINLLRM-------RKTPFIVALNKIDRLY 606 (1064)
T ss_pred eEEecCCCchhhhhhhhccccccceEEEEeehhcc----C----CcchhHHHHHHHh-------cCCCeEEeehhhhhhc
Confidence 56899999999999998888889999999999851 1 2344566666543 5799999999999752
Q ss_pred h--hhccCCCcccCCCCCCCCcch----hHHHHHHhhh---------------ccceeecccccccceeeeee
Q psy6623 184 E--KIKKSPLTICFPEYAGKRPGE----RNRMQESLKL---------------FDSICNNKWFTDTSIILFLN 235 (262)
Q Consensus 184 ~--kl~~~~l~~~fp~~~g~~~~~----~~~i~~~f~~---------------~~~~~~~tsA~d~~~I~~~f 235 (262)
. .....++...+...+..-..+ .+-|...|.. +-+.+.+|||.+|+||-.++
T Consensus 607 gwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl 679 (1064)
T KOG1144|consen 607 GWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLL 679 (1064)
T ss_pred ccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHH
Confidence 1 122223332222222211111 2333344433 34556789999999998877
|
|
| >KOG1145|consensus | Back alignment and domain information |
|---|
Probab=97.89 E-value=4.5e-05 Score=71.33 Aligned_cols=110 Identities=14% Similarity=0.095 Sum_probs=75.3
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
++-++++.||+|+..|..++..--..+|.|++|+...| .-+.+..+-+... ...++|++|..||+
T Consensus 199 ~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadD-----------GVmpQT~EaIkhA----k~A~VpiVvAinKi 263 (683)
T KOG1145|consen 199 SGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADD-----------GVMPQTLEAIKHA----KSANVPIVVAINKI 263 (683)
T ss_pred CCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccC-----------CccHhHHHHHHHH----HhcCCCEEEEEecc
Confidence 56889999999999999999888888999999998765 2333333333222 23579999999999
Q ss_pred chhhhhhccC--CCcc---cCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHH
Q psy6623 180 DLFEEKIKKS--PLTI---CFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 240 (262)
Q Consensus 180 Dl~~~kl~~~--~l~~---~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL 240 (262)
|.++....+. +|.. ...++. ..+.+...||++|+|+..+-++-+|
T Consensus 264 Dkp~a~pekv~~eL~~~gi~~E~~G----------------GdVQvipiSAl~g~nl~~L~eaill 313 (683)
T KOG1145|consen 264 DKPGANPEKVKRELLSQGIVVEDLG----------------GDVQVIPISALTGENLDLLEEAILL 313 (683)
T ss_pred CCCCCCHHHHHHHHHHcCccHHHcC----------------CceeEEEeecccCCChHHHHHHHHH
Confidence 9775332211 1110 011111 3466789999999999988876443
|
|
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=97.89 E-value=3e-05 Score=71.86 Aligned_cols=80 Identities=20% Similarity=0.297 Sum_probs=54.4
Q ss_pred ccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCC
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFT 168 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~ 168 (262)
|+......+..++..+.+.|++|++.+.+....-...++++++|+|... .-.....+.+..+.. .
T Consensus 62 T~~~~~~~~~~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~-----------g~~~qt~~~~~~~~~----~ 126 (409)
T CHL00071 62 TINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAAD-----------GPMPQTKEHILLAKQ----V 126 (409)
T ss_pred eEEccEEEEccCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCC-----------CCcHHHHHHHHHHHH----c
Confidence 3333344555567788999999998876666666788999999999875 122334444443332 2
Q ss_pred CCe-EEEEeeCCchhh
Q psy6623 169 DTS-IILFLNKKDLFE 183 (262)
Q Consensus 169 ~~p-iil~~NK~Dl~~ 183 (262)
++| ++++.||+|+..
T Consensus 127 g~~~iIvvvNK~D~~~ 142 (409)
T CHL00071 127 GVPNIVVFLNKEDQVD 142 (409)
T ss_pred CCCEEEEEEEccCCCC
Confidence 467 778999999864
|
|
| >KOG1489|consensus | Back alignment and domain information |
|---|
Probab=97.89 E-value=3.9e-05 Score=67.43 Aligned_cols=119 Identities=18% Similarity=0.200 Sum_probs=71.4
Q ss_pred ecccceeEEEEeeecc-ceeeeecCCcccc----c---hhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHH
Q psy6623 87 VKTTGIVEVHFSFKNL-NFKLFDVGGQRSE----R---KKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLF 158 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~-~~~i~D~~Gq~~~----r---~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~ 158 (262)
.|++| ++.+++. .+++=|.+|--.- | .....+.+.++.++||+|+|.... .+-++.-..++
T Consensus 232 ~P~iG----~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~-------~~p~~~~~lL~ 300 (366)
T KOG1489|consen 232 RPHIG----TVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQL-------RNPWQQLQLLI 300 (366)
T ss_pred ccccc----eeeccccceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCccc-------CCHHHHHHHHH
Confidence 46666 2333333 3889999884321 2 223445677999999999998421 13333333333
Q ss_pred HHHHh-CCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeeh
Q psy6623 159 DSICN-NKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 159 ~~i~~-~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~ 236 (262)
.++-. .+.+.+.|.+||+||+|+++.. .+++.+.... ..-.++..||+.++++.++.+
T Consensus 301 ~ELe~yek~L~~rp~liVaNKiD~~eae--------------------~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~ 360 (366)
T KOG1489|consen 301 EELELYEKGLADRPALIVANKIDLPEAE--------------------KNLLSSLAKRLQNPHVVPVSAKSGEGLEELLN 360 (366)
T ss_pred HHHHHHhhhhccCceEEEEeccCchhHH--------------------HHHHHHHHHHcCCCcEEEeeeccccchHHHHH
Confidence 33322 2456788999999999996421 1232222222 223578899999999887764
|
|
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=3.2e-05 Score=72.89 Aligned_cols=76 Identities=18% Similarity=0.285 Sum_probs=53.6
Q ss_pred eEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCe-
Q psy6623 93 VEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTS- 171 (262)
Q Consensus 93 ~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~p- 171 (262)
....+..++.++.++|++|++.|-+.-..-...+|++|+|+|..+ .-.....+.+..+.. .++|
T Consensus 135 ~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~-----------G~~~qt~e~~~~~~~----~gi~~ 199 (478)
T PLN03126 135 ATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGAD-----------GPMPQTKEHILLAKQ----VGVPN 199 (478)
T ss_pred EEEEEecCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCC-----------CCcHHHHHHHHHHHH----cCCCe
Confidence 344455677899999999999886655566678999999999875 222334444443332 2566
Q ss_pred EEEEeeCCchhh
Q psy6623 172 IILFLNKKDLFE 183 (262)
Q Consensus 172 iil~~NK~Dl~~ 183 (262)
++++.||+|+..
T Consensus 200 iIvvvNK~Dl~~ 211 (478)
T PLN03126 200 MVVFLNKQDQVD 211 (478)
T ss_pred EEEEEecccccC
Confidence 788999999853
|
|
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.7e-05 Score=71.67 Aligned_cols=112 Identities=20% Similarity=0.202 Sum_probs=72.9
Q ss_pred cccceeEEEEeeeccceeeeecCCccccchh--------hhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHH
Q psy6623 88 KTTGIVEVHFSFKNLNFKLFDVGGQRSERKK--------WIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFD 159 (262)
Q Consensus 88 pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~--------w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~ 159 (262)
.|..+-+..+.++++.+++.||+|-+..... -..-.+.++.|+||+|.+.. -..+-...+.
T Consensus 251 TTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~-----------~~~~d~~~~~ 319 (454)
T COG0486 251 TTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQP-----------LDKEDLALIE 319 (454)
T ss_pred CccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCC-----------CchhhHHHHH
Confidence 3445677889999999999999998753221 12346789999999999862 1112222332
Q ss_pred HHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 160 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 160 ~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
....+.|++++.||.||..+..... + + .. .......+||++|+|+..+-+.
T Consensus 320 -----~~~~~~~~i~v~NK~DL~~~~~~~~-~-~----~~----------------~~~~~i~iSa~t~~Gl~~L~~~ 370 (454)
T COG0486 320 -----LLPKKKPIIVVLNKADLVSKIELES-E-K----LA----------------NGDAIISISAKTGEGLDALREA 370 (454)
T ss_pred -----hcccCCCEEEEEechhcccccccch-h-h----cc----------------CCCceEEEEecCccCHHHHHHH
Confidence 1235689999999999976321110 0 0 00 1124677999999998777654
|
|
| >PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1) | Back alignment and domain information |
|---|
Probab=97.86 E-value=3.2e-05 Score=50.85 Aligned_cols=45 Identities=36% Similarity=0.518 Sum_probs=32.9
Q ss_pred CCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 126 VTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 126 ~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.++|+|++|+|..+ .-++++-+.+|+++. +.|.+.|+++|+||+|
T Consensus 14 ~~~ilfi~D~Se~C--------Gysie~Q~~L~~~ik--~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQC--------GYSIEEQLSLFKEIK--PLFPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TT--------SS-HHHHHHHHHHHH--HHTTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCC--------CCCHHHHHHHHHHHH--HHcCCCCEEEEEeccC
Confidence 57899999999854 568899999999997 4678999999999998
|
The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A. |
| >KOG3886|consensus | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.6e-05 Score=66.81 Aligned_cols=84 Identities=24% Similarity=0.451 Sum_probs=59.4
Q ss_pred ecccceeEEEEee-eccceeeeecCCcccc-----chhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHH---
Q psy6623 87 VKTTGIVEVHFSF-KNLNFKLFDVGGQRSE-----RKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKL--- 157 (262)
Q Consensus 87 ~pT~Gi~~~~~~~-~~~~~~i~D~~Gq~~~-----r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~--- 157 (262)
.+|+.+....+.+ +++.+++||.|||+.+ +..-.+-|++++++|+|+|++. +.++.-+..
T Consensus 37 g~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves-----------~e~~~D~~~yqk 105 (295)
T KOG3886|consen 37 GATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVES-----------REMEKDFHYYQK 105 (295)
T ss_pred CCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccc-----------hhhhhhHHHHHH
Confidence 4566666666665 6699999999999854 3355678999999999999986 333333333
Q ss_pred -HHHHHhCCCCCCCeEEEEeeCCchhh
Q psy6623 158 -FDSICNNKWFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 158 -~~~i~~~~~~~~~piil~~NK~Dl~~ 183 (262)
++.++.+. +.+-+..+..|+||..
T Consensus 106 ~Le~ll~~S--P~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 106 CLEALLQNS--PEAKIFCLLHKMDLVQ 130 (295)
T ss_pred HHHHHHhcC--CcceEEEEEeechhcc
Confidence 33445442 4677889999999854
|
|
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=97.83 E-value=3.2e-05 Score=76.29 Aligned_cols=83 Identities=13% Similarity=0.093 Sum_probs=63.0
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+.-|+-.....+.+++.++.++||+|+..+..-|...++.+|++|+|+|.++ . --......+..+..
T Consensus 57 rgiti~~~~~~~~~~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~----------g-~~~qt~~i~~~~~~-- 123 (691)
T PRK12739 57 RGITITSAATTCFWKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVS----------G-VEPQSETVWRQADK-- 123 (691)
T ss_pred cCCCccceeEEEEECCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCC----------C-CCHHHHHHHHHHHH--
Confidence 3445555667788889999999999999888889999999999999999875 1 11223344444432
Q ss_pred CCCCCeEEEEeeCCchhh
Q psy6623 166 WFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~ 183 (262)
.+.|++++.||+|+..
T Consensus 124 --~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 124 --YGVPRIVFVNKMDRIG 139 (691)
T ss_pred --cCCCEEEEEECCCCCC
Confidence 3589999999999874
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=4.5e-05 Score=70.09 Aligned_cols=116 Identities=16% Similarity=0.210 Sum_probs=73.1
Q ss_pred EEEEeeeccceeeeecCCccccchhhh-----------ccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 94 EVHFSFKNLNFKLFDVGGQRSERKKWI-----------HCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 94 ~~~~~~~~~~~~i~D~~Gq~~~r~~w~-----------~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
...+++++.++.+.||+|-++-.+... .-.+.++.+++|+|.+. .-.++-+.....+.
T Consensus 218 ~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~-----------~~~~qD~~ia~~i~ 286 (444)
T COG1160 218 DIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATE-----------GISEQDLRIAGLIE 286 (444)
T ss_pred eeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCC-----------CchHHHHHHHHHHH
Confidence 344666788999999999876444332 22356999999999986 22333334444444
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+ .+.+++|+.||.|+..+. ......+ .+-+..+|.- .-...+++||++|.+|..+|+.
T Consensus 287 ~----~g~~~vIvvNKWDl~~~~--~~~~~~~-----------k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~ 345 (444)
T COG1160 287 E----AGRGIVIVVNKWDLVEED--EATMEEF-----------KKKLRRKLPFLDFAPIVFISALTGQGLDKLFEA 345 (444)
T ss_pred H----cCCCeEEEEEccccCCch--hhHHHHH-----------HHHHHHHhccccCCeEEEEEecCCCChHHHHHH
Confidence 3 368899999999987631 0000000 1122222222 2235789999999999999986
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.75 E-value=7.7e-05 Score=68.78 Aligned_cols=122 Identities=15% Similarity=0.084 Sum_probs=74.1
Q ss_pred eeecccceeEEEEee-----eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHH
Q psy6623 85 TRVKTTGIVEVHFSF-----KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFD 159 (262)
Q Consensus 85 ~~~pT~Gi~~~~~~~-----~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~ 159 (262)
.|--|+-.+..++.+ +.+.+++.||+|+--|.---...+..|.|+|+|||.|. ---.+.+.-+-
T Consensus 54 ERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQ-----------GveAQTlAN~Y 122 (603)
T COG0481 54 ERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQ-----------GVEAQTLANVY 122 (603)
T ss_pred hcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECcc-----------chHHHHHHHHH
Confidence 333444434444444 23789999999998887666666788999999999986 11122222222
Q ss_pred HHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 160 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 160 ~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
..+. .+.-|+-|+||+||+.....+. ..-|.+-+.--.--...+|||+|.||.+++.+
T Consensus 123 lAle----~~LeIiPViNKIDLP~Adperv----------------k~eIe~~iGid~~dav~~SAKtG~gI~~iLe~ 180 (603)
T COG0481 123 LALE----NNLEIIPVLNKIDLPAADPERV----------------KQEIEDIIGIDASDAVLVSAKTGIGIEDVLEA 180 (603)
T ss_pred HHHH----cCcEEEEeeecccCCCCCHHHH----------------HHHHHHHhCCCcchheeEecccCCCHHHHHHH
Confidence 2232 2567888999999986321110 11222211111122456999999999988754
|
|
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=7.4e-05 Score=65.99 Aligned_cols=84 Identities=27% Similarity=0.392 Sum_probs=62.1
Q ss_pred ecccceeEEEEeeeccceeeeecCCccc---------cchhhhcccc-CCCEEEEeeeccccccccccCcccccHHHHHH
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRS---------ERKKWIHCFE-DVTAIIFCVAMSEYDQVLHEDETTNRMQESLK 156 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~---------~r~~w~~~f~-~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~ 156 (262)
..|.|++...|..+...+|+.||+|--- ++.- ..-.+ =.++|||++|.|..+ .-++++-..
T Consensus 200 FTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qA-i~AL~hl~~~IlF~~D~Se~c--------gy~lE~Q~~ 270 (346)
T COG1084 200 FTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQA-ILALRHLAGVILFLFDPSETC--------GYSLEEQIS 270 (346)
T ss_pred ccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHH-HHHHHHhcCeEEEEEcCcccc--------CCCHHHHHH
Confidence 3566788888888899999999999511 1111 11112 256789999999854 567888899
Q ss_pred HHHHHHhCCCCCCCeEEEEeeCCchh
Q psy6623 157 LFDSICNNKWFTDTSIILFLNKKDLF 182 (262)
Q Consensus 157 ~~~~i~~~~~~~~~piil~~NK~Dl~ 182 (262)
+|+++-. .+. .|+++|.||.|+.
T Consensus 271 L~~eIk~--~f~-~p~v~V~nK~D~~ 293 (346)
T COG1084 271 LLEEIKE--LFK-APIVVVINKIDIA 293 (346)
T ss_pred HHHHHHH--hcC-CCeEEEEeccccc
Confidence 9999974 355 8999999999986
|
|
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=4.6e-05 Score=71.44 Aligned_cols=105 Identities=13% Similarity=0.091 Sum_probs=64.9
Q ss_pred ceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchh
Q psy6623 103 NFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182 (262)
Q Consensus 103 ~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~ 182 (262)
.+.+.|++|++.+-+-...-...+|++|+|+|..+ .-......+.+. ++. .+.-.+++|++||+|+.
T Consensus 118 ~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~----------g~~~~qT~ehl~-i~~--~lgi~~iIVvlNKiDlv 184 (460)
T PTZ00327 118 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAANE----------SCPQPQTSEHLA-AVE--IMKLKHIIILQNKIDLV 184 (460)
T ss_pred eEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCC----------CccchhhHHHHH-HHH--HcCCCcEEEEEeccccc
Confidence 57899999999886665566678999999999885 101112222222 221 12235789999999986
Q ss_pred hh-hhccCCCcccCCCCCCCCcchhHHHHHHhh---hccceeecccccccceeeeeeh
Q psy6623 183 EE-KIKKSPLTICFPEYAGKRPGERNRMQESLK---LFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 183 ~~-kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~---~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
.. .+... .+.+.+.+. .....++.+||++|+||..+.+
T Consensus 185 ~~~~~~~~----------------~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~ 226 (460)
T PTZ00327 185 KEAQAQDQ----------------YEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLE 226 (460)
T ss_pred CHHHHHHH----------------HHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHH
Confidence 42 11000 111222111 1345688999999999988874
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=97.70 E-value=3.7e-05 Score=61.28 Aligned_cols=88 Identities=11% Similarity=0.065 Sum_probs=52.9
Q ss_pred chhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccC
Q psy6623 116 RKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICF 195 (262)
Q Consensus 116 r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~f 195 (262)
|.++.+..++++.+|+|+|.++.. ... ...+. ..+.. .+.|+++++||+|+..+...
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~--------~~~---~~~l~-~~~~~---~~~p~iiv~NK~Dl~~~~~~-------- 59 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPE--------LTR---SRKLE-RYVLE---LGKKLLIVLNKADLVPKEVL-------- 59 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCc--------ccC---CHHHH-HHHHh---CCCcEEEEEEhHHhCCHHHH--------
Confidence 667888999999999999987621 001 11111 11211 25799999999998532100
Q ss_pred CCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 196 PEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 196 p~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
..+. .........++.+||+++.|++++++.
T Consensus 60 ----------~~~~-~~~~~~~~~~~~iSa~~~~gi~~L~~~ 90 (156)
T cd01859 60 ----------EKWK-SIKESEGIPVVYVSAKERLGTKILRRT 90 (156)
T ss_pred ----------HHHH-HHHHhCCCcEEEEEccccccHHHHHHH
Confidence 0000 000111234678999999999988864
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=97.68 E-value=5.6e-05 Score=74.89 Aligned_cols=83 Identities=19% Similarity=0.226 Sum_probs=58.0
Q ss_pred eecccceeEEE----EeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHH
Q psy6623 86 RVKTTGIVEVH----FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSI 161 (262)
Q Consensus 86 ~~pT~Gi~~~~----~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i 161 (262)
+..|++..... +..++..+.+|||+|+..+.......++.+|++|+|+|..+ .-..+....++..
T Consensus 66 rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~-----------g~~~~t~~~~~~~ 134 (720)
T TIGR00490 66 RGITINAANVSMVHEYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVE-----------GVMPQTETVLRQA 134 (720)
T ss_pred hcchhhcccceeEEeecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCC-----------CCCccHHHHHHHH
Confidence 34465543222 44567889999999999988777888999999999999875 1122233444443
Q ss_pred HhCCCCCCCeEEEEeeCCchhh
Q psy6623 162 CNNKWFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 162 ~~~~~~~~~piil~~NK~Dl~~ 183 (262)
.+ .+.|+++++||+|...
T Consensus 135 ~~----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 135 LK----ENVKPVLFINKVDRLI 152 (720)
T ss_pred HH----cCCCEEEEEEChhccc
Confidence 32 2467889999999863
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.65 E-value=8.4e-05 Score=65.97 Aligned_cols=83 Identities=14% Similarity=0.115 Sum_probs=51.2
Q ss_pred ccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCC
Q psy6623 123 FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKR 202 (262)
Q Consensus 123 f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~ 202 (262)
..+++.+|+|+|+++ .......+..|-..+.. .++|++|++||+||..++..
T Consensus 78 aaniD~vllV~d~~~----------p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~~--------------- 129 (298)
T PRK00098 78 AANVDQAVLVFAAKE----------PDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLEE--------------- 129 (298)
T ss_pred eecCCEEEEEEECCC----------CCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHHH---------------
Confidence 489999999999976 22222222233222322 46899999999998521100
Q ss_pred cchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 203 PGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 203 ~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
.......+....+.++.+||++++||++++.
T Consensus 130 ---~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~ 160 (298)
T PRK00098 130 ---ARELLALYRAIGYDVLELSAKEGEGLDELKP 160 (298)
T ss_pred ---HHHHHHHHHHCCCeEEEEeCCCCccHHHHHh
Confidence 1111112222345678999999999998875
|
|
| >KOG1490|consensus | Back alignment and domain information |
|---|
Probab=97.63 E-value=7.7e-05 Score=69.14 Aligned_cols=124 Identities=19% Similarity=0.227 Sum_probs=81.5
Q ss_pred ccceeEEEEeeeccceeeeecCCccc---c-chhhhc-----cccCCCEEEEeeeccccccccccCcccccHHHHHHHHH
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRS---E-RKKWIH-----CFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFD 159 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~---~-r~~w~~-----~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~ 159 (262)
|.++.+..+.++-..|++.||+|--. + |..... .-+=-.+|+|+.|+|.-+ .-++.+-.++|+
T Consensus 202 TksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~C--------GySva~QvkLfh 273 (620)
T KOG1490|consen 202 TKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMC--------GYSVAAQVKLYH 273 (620)
T ss_pred cchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhh--------CCCHHHHHHHHH
Confidence 33444444455557789999998421 1 111111 011235799999999843 678999999999
Q ss_pred HHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcch-hHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 160 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGE-RNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 160 ~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~-~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
++- |.|.+.|+||++||+|+.. ..++.. + .+.+........+.+..||..+-+||-.|=..
T Consensus 274 sIK--pLFaNK~~IlvlNK~D~m~----~edL~~-----------~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ 335 (620)
T KOG1490|consen 274 SIK--PLFANKVTILVLNKIDAMR----PEDLDQ-----------KNQELLQTIIDDGNVKVVQTSCVQEEGVMDVRTT 335 (620)
T ss_pred HhH--HHhcCCceEEEeecccccC----ccccCH-----------HHHHHHHHHHhccCceEEEecccchhceeeHHHH
Confidence 996 7899999999999999864 122211 1 23333333335577889999999999887665
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00011 Score=66.63 Aligned_cols=85 Identities=16% Similarity=0.079 Sum_probs=52.6
Q ss_pred hhccccCCCEEEEeeeccccccccccCcccc-cHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCC
Q psy6623 119 WIHCFEDVTAIIFCVAMSEYDQVLHEDETTN-RMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPE 197 (262)
Q Consensus 119 w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~-~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~ 197 (262)
....+.+++.+++|+|+.+ .. .....-.++..+ . ..++|++||+||+||..+.-
T Consensus 83 ~R~~~aNvD~vLlV~d~~~----------p~~~~~~LdR~L~~a-~---~~~ip~ILVlNK~DLv~~~~----------- 137 (352)
T PRK12289 83 DRPPVANADQILLVFALAE----------PPLDPWQLSRFLVKA-E---STGLEIVLCLNKADLVSPTE----------- 137 (352)
T ss_pred echhhhcCCEEEEEEECCC----------CCCCHHHHHHHHHHH-H---HCCCCEEEEEEchhcCChHH-----------
Confidence 3446899999999999986 11 111112222222 1 24689999999999853210
Q ss_pred CCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 198 YAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 198 ~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
.....+.+....+.++++||++++||.++++
T Consensus 138 --------~~~~~~~~~~~g~~v~~iSA~tg~GI~eL~~ 168 (352)
T PRK12289 138 --------QQQWQDRLQQWGYQPLFISVETGIGLEALLE 168 (352)
T ss_pred --------HHHHHHHHHhcCCeEEEEEcCCCCCHHHHhh
Confidence 0111222223345678899999999988885
|
|
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00017 Score=63.41 Aligned_cols=81 Identities=19% Similarity=0.300 Sum_probs=52.0
Q ss_pred ecccceeEEEEee--ec--cceeeeecCC--------------------------ccccchhhhccccC--CCEEEEeee
Q psy6623 87 VKTTGIVEVHFSF--KN--LNFKLFDVGG--------------------------QRSERKKWIHCFED--VTAIIFCVA 134 (262)
Q Consensus 87 ~pT~Gi~~~~~~~--~~--~~~~i~D~~G--------------------------q~~~r~~w~~~f~~--~~~iIfv~d 134 (262)
.+|+++......+ ++ +++++|||+| ++..+..+..++.+ +++++|+++
T Consensus 44 ~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~ 123 (276)
T cd01850 44 DKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIE 123 (276)
T ss_pred CCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEe
Confidence 4566655444433 34 6799999999 33333344356654 778888887
Q ss_pred ccccccccccCcccccHHHH-HHHHHHHHhCCCCCCCeEEEEeeCCchhh
Q psy6623 135 MSEYDQVLHEDETTNRMQES-LKLFDSICNNKWFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 135 ls~~d~~~~e~~~~~~l~e~-~~~~~~i~~~~~~~~~piil~~NK~Dl~~ 183 (262)
.+. ..+... ++.++.+.. .+|+++|+||+|+..
T Consensus 124 ~~~-----------~~l~~~D~~~lk~l~~-----~v~vi~VinK~D~l~ 157 (276)
T cd01850 124 PTG-----------HGLKPLDIEFMKRLSK-----RVNIIPVIAKADTLT 157 (276)
T ss_pred CCC-----------CCCCHHHHHHHHHHhc-----cCCEEEEEECCCcCC
Confidence 664 233333 566666642 589999999999854
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00022 Score=65.81 Aligned_cols=80 Identities=19% Similarity=0.252 Sum_probs=52.8
Q ss_pred cccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 88 KTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 88 pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
-|+......+..++..+.+.||+|++.+.+.-..-...++++++|+|..+ .-.....+.+..+..
T Consensus 61 ~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~-----------g~~~qt~~~~~~~~~---- 125 (396)
T PRK00049 61 ITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAAD-----------GPMPQTREHILLARQ---- 125 (396)
T ss_pred eEEeeeEEEEcCCCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCC-----------CCchHHHHHHHHHHH----
Confidence 34444444455567788999999998775555556688999999999875 112333344433332
Q ss_pred CCCeEE-EEeeCCchh
Q psy6623 168 TDTSII-LFLNKKDLF 182 (262)
Q Consensus 168 ~~~pii-l~~NK~Dl~ 182 (262)
.++|.+ ++.||+|+.
T Consensus 126 ~g~p~iiVvvNK~D~~ 141 (396)
T PRK00049 126 VGVPYIVVFLNKCDMV 141 (396)
T ss_pred cCCCEEEEEEeecCCc
Confidence 246765 689999986
|
|
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00044 Score=61.89 Aligned_cols=37 Identities=24% Similarity=0.268 Sum_probs=29.1
Q ss_pred ccceeeeecCCc----cccchhhhc---cccCCCEEEEeeeccc
Q psy6623 101 NLNFKLFDVGGQ----RSERKKWIH---CFEDVTAIIFCVAMSE 137 (262)
Q Consensus 101 ~~~~~i~D~~Gq----~~~r~~w~~---~f~~~~~iIfv~dls~ 137 (262)
.+.+++||++|+ ...+.+-.. .+++|+++|+|+|++.
T Consensus 68 ~v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 68 YVPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred cceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 367999999998 445544334 5899999999999985
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00015 Score=65.95 Aligned_cols=134 Identities=15% Similarity=0.063 Sum_probs=81.9
Q ss_pred eeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 85 ~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
.|--|+.+....|+.+...++|.|+.|++-|-+.-..-...+|+.|+|+|.++- +...--.......|..-+.+ .
T Consensus 68 erGvTi~~~~~~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~-efE~g~~~~gQtrEH~~La~-t--- 142 (428)
T COG5256 68 ERGVTIDVAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDG-EFEAGFGVGGQTREHAFLAR-T--- 142 (428)
T ss_pred hcceEEEEEEEEeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCC-ccccccccCCchhHHHHHHH-h---
Confidence 345677777788888889999999999999988888888899999999999862 10000000122223222221 1
Q ss_pred CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHh--hhccceeecccccccceeeeee
Q psy6623 165 KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESL--KLFDSICNNKWFTDTSIILFLN 235 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f--~~~~~~~~~tsA~d~~~I~~~f 235 (262)
+.-..++|+.||+|+..= ...+| .-- ..+...+.+.+ ....+.+.++||..|+|+...=
T Consensus 143 --lGi~~lIVavNKMD~v~w-----de~rf----~ei-~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s 203 (428)
T COG5256 143 --LGIKQLIVAVNKMDLVSW-----DEERF----EEI-VSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS 203 (428)
T ss_pred --cCCceEEEEEEccccccc-----CHHHH----HHH-HHHHHHHHHHcCCCccCCeEEecccccCCcccccC
Confidence 234568899999998641 00000 000 00011222211 1146788999999999997544
|
|
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00039 Score=68.71 Aligned_cols=81 Identities=12% Similarity=0.076 Sum_probs=57.9
Q ss_pred cccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 88 KTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 88 pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
-|+-.....+.+++..+++.||+|+..+-.--..-.+.++++|+|+|.+. .-..+....+..+..
T Consensus 61 ~ti~~~~~~~~~~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~-----------g~~~qt~~~~~~~~~---- 125 (693)
T PRK00007 61 ITITSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVG-----------GVEPQSETVWRQADK---- 125 (693)
T ss_pred CCEeccEEEEEECCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCC-----------CcchhhHHHHHHHHH----
Confidence 34444456677788999999999988765545556788999999999775 122334555555543
Q ss_pred CCCeEEEEeeCCchhh
Q psy6623 168 TDTSIILFLNKKDLFE 183 (262)
Q Consensus 168 ~~~piil~~NK~Dl~~ 183 (262)
.+.|++++.||+|+..
T Consensus 126 ~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 126 YKVPRIAFVNKMDRTG 141 (693)
T ss_pred cCCCEEEEEECCCCCC
Confidence 2578899999999874
|
|
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0004 Score=60.71 Aligned_cols=116 Identities=18% Similarity=0.153 Sum_probs=68.9
Q ss_pred eeccceeeeecCCccccchhh--------hccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCC
Q psy6623 99 FKNLNFKLFDVGGQRSERKKW--------IHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDT 170 (262)
Q Consensus 99 ~~~~~~~i~D~~Gq~~~r~~w--------~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~ 170 (262)
.++..+-+.||+|-..-+..- ..-+.+|+.|+||+|..+- ... .....++.+.+ .+.
T Consensus 51 ~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~---------~~~--~d~~il~~lk~----~~~ 115 (298)
T COG1159 51 TDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEG---------WGP--GDEFILEQLKK----TKT 115 (298)
T ss_pred cCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEecccc---------CCc--cHHHHHHHHhh----cCC
Confidence 357888999999965443322 2346889999999998860 111 11112222221 357
Q ss_pred eEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhccCC
Q psy6623 171 SIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 247 (262)
Q Consensus 171 piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~~~ 247 (262)
|++++.||+|....+..-.++ .++....+.-. -++++||+.|.|+..+.+ .+...+..+
T Consensus 116 pvil~iNKID~~~~~~~l~~~--------------~~~~~~~~~f~--~ivpiSA~~g~n~~~L~~--~i~~~Lpeg 174 (298)
T COG1159 116 PVILVVNKIDKVKPKTVLLKL--------------IAFLKKLLPFK--EIVPISALKGDNVDTLLE--IIKEYLPEG 174 (298)
T ss_pred CeEEEEEccccCCcHHHHHHH--------------HHHHHhhCCcc--eEEEeeccccCCHHHHHH--HHHHhCCCC
Confidence 999999999976533210011 12222211111 477899999999988884 455555543
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00044 Score=63.67 Aligned_cols=108 Identities=18% Similarity=0.113 Sum_probs=67.1
Q ss_pred EEEEeeeccceeeeecCCcccc---------chhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 94 EVHFSFKNLNFKLFDVGGQRSE---------RKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 94 ~~~~~~~~~~~~i~D~~Gq~~~---------r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
.....+.+..|.+.||||-+.. +.....-++.||++|||+|.-. .+...-+.+-.++.
T Consensus 43 y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~------------Git~~D~~ia~~Lr- 109 (444)
T COG1160 43 YGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGRE------------GITPADEEIAKILR- 109 (444)
T ss_pred cceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCC------------CCCHHHHHHHHHHH-
Confidence 3445667788999999997632 2233445688999999999764 22222223333332
Q ss_pred CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 165 KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
..+.|++|+.||+|-........ +|-.--| -..+.+||..|.||..+.+.
T Consensus 110 --~~~kpviLvvNK~D~~~~e~~~~-----------------efyslG~----g~~~~ISA~Hg~Gi~dLld~ 159 (444)
T COG1160 110 --RSKKPVILVVNKIDNLKAEELAY-----------------EFYSLGF----GEPVPISAEHGRGIGDLLDA 159 (444)
T ss_pred --hcCCCEEEEEEcccCchhhhhHH-----------------HHHhcCC----CCceEeehhhccCHHHHHHH
Confidence 13689999999999763221111 0100000 12567999999999988864
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00075 Score=63.25 Aligned_cols=83 Identities=18% Similarity=0.247 Sum_probs=54.2
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+--|+......++.++..+.+.||+|++.+-..-..-...+|++++|+|..+ .-..+..+.+..+..
T Consensus 108 rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~-----------g~~~qt~e~l~~~~~-- 174 (447)
T PLN03127 108 RGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPD-----------GPMPQTKEHILLARQ-- 174 (447)
T ss_pred cCceeeeeEEEEcCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCC-----------CCchhHHHHHHHHHH--
Confidence 3445555555566667789999999998765544444467999999999764 112233334433322
Q ss_pred CCCCCe-EEEEeeCCchhh
Q psy6623 166 WFTDTS-IILFLNKKDLFE 183 (262)
Q Consensus 166 ~~~~~p-iil~~NK~Dl~~ 183 (262)
.++| ++++.||+|+..
T Consensus 175 --~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 175 --VGVPSLVVFLNKVDVVD 191 (447)
T ss_pred --cCCCeEEEEEEeeccCC
Confidence 2477 578899999863
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00072 Score=59.71 Aligned_cols=84 Identities=10% Similarity=0.003 Sum_probs=51.4
Q ss_pred hccccCCCEEEEeeeccccccccccCcccc-cHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCC
Q psy6623 120 IHCFEDVTAIIFCVAMSEYDQVLHEDETTN-RMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEY 198 (262)
Q Consensus 120 ~~~f~~~~~iIfv~dls~~d~~~~e~~~~~-~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~ 198 (262)
.....++|.+++|+|+.+ .. ++...-+++..+.. .++|++|++||+||..+.-
T Consensus 73 ~~i~anvD~vllV~d~~~----------p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~------------ 126 (287)
T cd01854 73 QVIAANVDQLVIVVSLNE----------PFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEE------------ 126 (287)
T ss_pred eeEEEeCCEEEEEEEcCC----------CCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHH------------
Confidence 345789999999999986 22 23322233332221 3689999999999854210
Q ss_pred CCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 199 AGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 199 ~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
.......+......++.+||+++.|++.++.
T Consensus 127 -------~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~ 157 (287)
T cd01854 127 -------EELELVEALALGYPVLAVSAKTGEGLDELRE 157 (287)
T ss_pred -------HHHHHHHHHhCCCeEEEEECCCCccHHHHHh
Confidence 0000111111335577899999999987774
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0012 Score=59.08 Aligned_cols=116 Identities=12% Similarity=0.061 Sum_probs=74.7
Q ss_pred cccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 88 KTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 88 pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
-||.+....|.-..-+|-+-||+|++.|-+....--..|+.+|+++|.-. .-++++.. -..+.. .+
T Consensus 72 ITIDVAYRyFsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~-----------Gvl~QTrR-Hs~I~s--LL 137 (431)
T COG2895 72 ITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARK-----------GVLEQTRR-HSFIAS--LL 137 (431)
T ss_pred ceEEEEeeecccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecch-----------hhHHHhHH-HHHHHH--Hh
Confidence 35555556666678899999999999987766666667899999999742 22233222 122221 23
Q ss_pred CCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-------ccceeecccccccceeeee
Q psy6623 168 TDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-------FDSICNNKWFTDTSIILFL 234 (262)
Q Consensus 168 ~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-------~~~~~~~tsA~d~~~I~~~ 234 (262)
.-..++|..||+||.+=. . . . -+-|...|.. +...+.+.||..|.||-.-
T Consensus 138 GIrhvvvAVNKmDLvdy~--e---~----------~--F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~~ 194 (431)
T COG2895 138 GIRHVVVAVNKMDLVDYS--E---E----------V--FEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVSK 194 (431)
T ss_pred CCcEEEEEEeeecccccC--H---H----------H--HHHHHHHHHHHHHHcCCCcceEEechhccCCccccc
Confidence 345788889999996510 0 0 0 2233333332 5667889999999999654
|
|
| >KOG1707|consensus | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0002 Score=67.41 Aligned_cols=110 Identities=14% Similarity=0.110 Sum_probs=69.0
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHH----HHHHHHHHHhCCCCCCCeEEEEe
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQE----SLKLFDSICNNKWFTDTSIILFL 176 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e----~~~~~~~i~~~~~~~~~piil~~ 176 (262)
.+...+.|++..+..+-.-.+=++.+++|..|+++++ ...++. |+-++++.... ..++||||+|
T Consensus 55 ~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~----------~~T~D~ist~WLPlir~~~~~--~~~~PVILvG 122 (625)
T KOG1707|consen 55 NVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDD----------ESTVDRISTKWLPLIRQLFGD--YHETPVILVG 122 (625)
T ss_pred cCceEEEecccccchhHHHHHHHhhcCEEEEEEecCC----------hHHhhhhhhhhhhhhhcccCC--CccCCEEEEe
Confidence 3446688988655555554667889999999999887 333333 44444443322 3589999999
Q ss_pred eCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeehh
Q psy6623 177 NKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 177 NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~~ 237 (262)
||+|+......+ ++ ..+.-|-..|.+ + .++.|||++-.|+.++|..
T Consensus 123 NK~d~~~~~~~s--~e-----------~~~~pim~~f~E--iEtciecSA~~~~n~~e~fYy 169 (625)
T KOG1707|consen 123 NKSDNGDNENNS--DE-----------VNTLPIMIAFAE--IETCIECSALTLANVSELFYY 169 (625)
T ss_pred eccCCccccccc--hh-----------HHHHHHHHHhHH--HHHHHhhhhhhhhhhHhhhhh
Confidence 999986522110 00 002223334433 2 2567999999999999964
|
|
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00081 Score=67.74 Aligned_cols=67 Identities=15% Similarity=0.162 Sum_probs=51.9
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
+..+.+.||+|+..+-.--....+.+|++|+|+|.++ .-.......|+.+... +.|+++|.||+|
T Consensus 91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~-----------g~~~~t~~~~~~~~~~----~~p~iv~iNK~D 155 (836)
T PTZ00416 91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVE-----------GVCVQTETVLRQALQE----RIRPVLFINKVD 155 (836)
T ss_pred ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCC-----------CcCccHHHHHHHHHHc----CCCEEEEEEChh
Confidence 5678999999998887767777899999999999876 2223344556655542 579999999999
Q ss_pred hh
Q psy6623 181 LF 182 (262)
Q Consensus 181 l~ 182 (262)
+.
T Consensus 156 ~~ 157 (836)
T PTZ00416 156 RA 157 (836)
T ss_pred hh
Confidence 97
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.001 Score=60.32 Aligned_cols=83 Identities=12% Similarity=0.077 Sum_probs=49.4
Q ss_pred cCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCc
Q psy6623 124 EDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRP 203 (262)
Q Consensus 124 ~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~ 203 (262)
.|+|.+++|+++.. ..++...-.++. ++. ..++|++|++||+||..+.- ...
T Consensus 119 ANvD~vlIV~s~~p----------~~s~~~Ldr~L~-~a~---~~~i~~VIVlNK~DL~~~~~-~~~------------- 170 (347)
T PRK12288 119 ANIDQIVIVSAVLP----------ELSLNIIDRYLV-ACE---TLGIEPLIVLNKIDLLDDEG-RAF------------- 170 (347)
T ss_pred EEccEEEEEEeCCC----------CCCHHHHHHHHH-HHH---hcCCCEEEEEECccCCCcHH-HHH-------------
Confidence 56999999999764 223322222222 222 24689999999999964210 000
Q ss_pred chhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 204 GERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 204 ~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
..-..+.+....+.++.+||++++||.++++
T Consensus 171 --~~~~~~~y~~~g~~v~~vSA~tg~GideL~~ 201 (347)
T PRK12288 171 --VNEQLDIYRNIGYRVLMVSSHTGEGLEELEA 201 (347)
T ss_pred --HHHHHHHHHhCCCeEEEEeCCCCcCHHHHHH
Confidence 0111112222345678899999999999885
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00078 Score=53.77 Aligned_cols=83 Identities=13% Similarity=0.076 Sum_probs=46.2
Q ss_pred ccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCC
Q psy6623 123 FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKR 202 (262)
Q Consensus 123 f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~ 202 (262)
.+++|.|++|+|.++.. ...-.. +...+.. ...+.|+++++||+|+..+.. +
T Consensus 6 l~~aD~il~VvD~~~p~--------~~~~~~----i~~~l~~-~~~~~p~ilVlNKiDl~~~~~----~----------- 57 (157)
T cd01858 6 IDSSDVVIQVLDARDPM--------GTRCKH----VEEYLKK-EKPHKHLIFVLNKCDLVPTWV----T----------- 57 (157)
T ss_pred hhhCCEEEEEEECCCCc--------cccCHH----HHHHHHh-ccCCCCEEEEEEchhcCCHHH----H-----------
Confidence 57899999999988621 111112 2222221 123589999999999954210 0
Q ss_pred cchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 203 PGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 203 ~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
..++...-.......+.+||+.+.|+..+.+
T Consensus 58 ---~~~~~~~~~~~~~~~~~iSa~~~~~~~~L~~ 88 (157)
T cd01858 58 ---ARWVKILSKEYPTIAFHASINNPFGKGSLIQ 88 (157)
T ss_pred ---HHHHHHHhcCCcEEEEEeeccccccHHHHHH
Confidence 0111111111123346688888888877664
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0014 Score=60.60 Aligned_cols=85 Identities=15% Similarity=0.153 Sum_probs=58.7
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
|--|+=..-..+.+++..++|.||.|+.-|----..-..=+++|+++||.++ --+.+..-.++..+..
T Consensus 52 RGITILaKnTav~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~E-----------GpMPQTrFVlkKAl~~- 119 (603)
T COG1217 52 RGITILAKNTAVNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASE-----------GPMPQTRFVLKKALAL- 119 (603)
T ss_pred cCcEEEeccceeecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEccc-----------CCCCchhhhHHHHHHc-
Confidence 3333333445577889999999999998776655666677999999999986 3344444444444432
Q ss_pred CCCCCeEEEEeeCCchhhhh
Q psy6623 166 WFTDTSIILFLNKKDLFEEK 185 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~k 185 (262)
+.+-||+.||+|.+..+
T Consensus 120 ---gL~PIVVvNKiDrp~Ar 136 (603)
T COG1217 120 ---GLKPIVVINKIDRPDAR 136 (603)
T ss_pred ---CCCcEEEEeCCCCCCCC
Confidence 34556778999987654
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0014 Score=51.42 Aligned_cols=78 Identities=18% Similarity=0.065 Sum_probs=44.0
Q ss_pred cccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCC
Q psy6623 122 CFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGK 201 (262)
Q Consensus 122 ~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~ 201 (262)
..++++++|+|+|..+-. ...-.+..+++.. . ..+.|+++++||+|+..+..
T Consensus 8 ~i~~aD~vl~ViD~~~p~--------~~~~~~l~~~l~~----~-~~~k~~iivlNK~DL~~~~~--------------- 59 (141)
T cd01857 8 VVERSDIVVQIVDARNPL--------LFRPPDLERYVKE----V-DPRKKNILLLNKADLLTEEQ--------------- 59 (141)
T ss_pred HHhhCCEEEEEEEccCCc--------ccCCHHHHHHHHh----c-cCCCcEEEEEechhcCCHHH---------------
Confidence 357899999999987611 1111122222221 1 14689999999999854221
Q ss_pred CcchhHHHHHHhhhccceeeccccccccee
Q psy6623 202 RPGERNRMQESLKLFDSICNNKWFTDTSII 231 (262)
Q Consensus 202 ~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I 231 (262)
.....+.+......++++||.++.+.
T Consensus 60 ----~~~~~~~~~~~~~~ii~iSa~~~~~~ 85 (141)
T cd01857 60 ----RKAWAEYFKKEGIVVVFFSALKENAT 85 (141)
T ss_pred ----HHHHHHHHHhcCCeEEEEEecCCCcE
Confidence 01111222222345678999988863
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0012 Score=66.62 Aligned_cols=67 Identities=13% Similarity=0.104 Sum_probs=52.4
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
+..+++.||+|+..|-.-.....+.++++|+|+|.++ .-.......|+.+.. .+.|++|+.||+|
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~-----------Gv~~~t~~~~~~~~~----~~~p~i~~iNK~D 161 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------GVCVQTETVLRQALG----ERIRPVLTVNKMD 161 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCC-----------CCcccHHHHHHHHHH----CCCCEEEEEECCc
Confidence 5678999999999987777777899999999999885 212233445655543 3689999999999
Q ss_pred hh
Q psy6623 181 LF 182 (262)
Q Consensus 181 l~ 182 (262)
+.
T Consensus 162 ~~ 163 (843)
T PLN00116 162 RC 163 (843)
T ss_pred cc
Confidence 97
|
|
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0015 Score=54.21 Aligned_cols=64 Identities=16% Similarity=0.079 Sum_probs=38.8
Q ss_pred cceeeeecCCccccchhhhc-----cccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEe
Q psy6623 102 LNFKLFDVGGQRSERKKWIH-----CFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFL 176 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~~w~~-----~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~ 176 (262)
..+.+||++|.......-.. .+.+++.+|+|.+ .++.+.-..+...+.. .+.|+++|+
T Consensus 52 ~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~--------------~~~~~~d~~~~~~l~~---~~~~~ilV~ 114 (197)
T cd04104 52 PNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISS--------------TRFSSNDVKLAKAIQC---MGKKFYFVR 114 (197)
T ss_pred CCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeC--------------CCCCHHHHHHHHHHHH---hCCCEEEEE
Confidence 46899999998542221122 2678888888743 2233333333333332 157999999
Q ss_pred eCCchh
Q psy6623 177 NKKDLF 182 (262)
Q Consensus 177 NK~Dl~ 182 (262)
||+|+.
T Consensus 115 nK~D~~ 120 (197)
T cd04104 115 TKVDRD 120 (197)
T ss_pred ecccch
Confidence 999984
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >KOG0458|consensus | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0038 Score=59.07 Aligned_cols=128 Identities=15% Similarity=0.143 Sum_probs=81.0
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
--|..+....|+-+...+++.|.+|++-|-.-...--..+++.|+|+|++- +..-.--+......|-..+++.+
T Consensus 240 GvTm~v~~~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~-~~FE~gfd~~gQtrEha~llr~L----- 313 (603)
T KOG0458|consen 240 GVTMDVKTTWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAST-GEFESGFDPGGQTREHALLLRSL----- 313 (603)
T ss_pred ceeEEeeeEEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCc-chhhhccCCCCchHHHHHHHHHc-----
Confidence 334444555666677889999999998887766666667899999999983 32222212234455555554443
Q ss_pred CCCCeEEEEeeCCchhh---hhhccCCCcccCCCCCCCCcch-hHHHHH--Hhhhccceeecccccccceeeee
Q psy6623 167 FTDTSIILFLNKKDLFE---EKIKKSPLTICFPEYAGKRPGE-RNRMQE--SLKLFDSICNNKWFTDTSIILFL 234 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~---~kl~~~~l~~~fp~~~g~~~~~-~~~i~~--~f~~~~~~~~~tsA~d~~~I~~~ 234 (262)
.-..++|+.||+|+-+ +|... +. .. ..|+.+ .|.+..+.+.++|+..|+|+-..
T Consensus 314 -gi~qlivaiNKmD~V~Wsq~RF~e--Ik-----------~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 314 -GISQLIVAINKMDLVSWSQDRFEE--IK-----------NKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred -CcceEEEEeecccccCccHHHHHH--HH-----------HHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 3457899999999853 11100 00 00 233322 34556788999999999998765
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.005 Score=46.28 Aligned_cols=70 Identities=27% Similarity=0.438 Sum_probs=44.6
Q ss_pred eeEEEEeeeccceeeeecCCcccc---------chhhhccccCCCEEEEeeeccccccccccCcccccHHH-HHHHHHHH
Q psy6623 92 IVEVHFSFKNLNFKLFDVGGQRSE---------RKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQE-SLKLFDSI 161 (262)
Q Consensus 92 i~~~~~~~~~~~~~i~D~~Gq~~~---------r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e-~~~~~~~i 161 (262)
.....+.+++..+.++||+|-... ........+.++++|||+|.++ ...+ ...+++.+
T Consensus 37 ~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~------------~~~~~~~~~~~~l 104 (116)
T PF01926_consen 37 PVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASN------------PITEDDKNILREL 104 (116)
T ss_dssp EEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTS------------HSHHHHHHHHHHH
T ss_pred eeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCC------------CCCHHHHHHHHHH
Confidence 333455667888899999996431 1112223388999999999554 2222 23333444
Q ss_pred HhCCCCCCCeEEEEeeC
Q psy6623 162 CNNKWFTDTSIILFLNK 178 (262)
Q Consensus 162 ~~~~~~~~~piil~~NK 178 (262)
+ .+.|+++|+||
T Consensus 105 -~----~~~~~i~v~NK 116 (116)
T PF01926_consen 105 -K----NKKPIILVLNK 116 (116)
T ss_dssp -H----TTSEEEEEEES
T ss_pred -h----cCCCEEEEEcC
Confidence 2 57899999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0027 Score=61.32 Aligned_cols=108 Identities=10% Similarity=0.060 Sum_probs=63.0
Q ss_pred cceeeeecCCcccc--c---hhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEe
Q psy6623 102 LNFKLFDVGGQRSE--R---KKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFL 176 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~--r---~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~ 176 (262)
..+.+.||+|-..- + ..-....+++++||||+|... .....+ ....+.+.. ..++.|++++.
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~----------~~s~~D-eeIlk~Lkk--~~K~~PVILVV 296 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQ----------LKSISD-EEVREAILA--VGQSVPLYVLV 296 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCC----------CCChhH-HHHHHHHHh--cCCCCCEEEEE
Confidence 67889999997542 1 123346889999999999765 111111 122222221 11236999999
Q ss_pred eCCchhhhhhccCCCcccCCCCCCCCcch-hHHHHHHhhh---ccceeecccccccceeeeeeh
Q psy6623 177 NKKDLFEEKIKKSPLTICFPEYAGKRPGE-RNRMQESLKL---FDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 177 NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~-~~~i~~~f~~---~~~~~~~tsA~d~~~I~~~f~ 236 (262)
||+|+.++. .. .... ..++...+.. ..--++++||+.|.|+..+.+
T Consensus 297 NKIDl~dre--ed------------dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLd 346 (741)
T PRK09866 297 NKFDQQDRN--SD------------DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARH 346 (741)
T ss_pred EcccCCCcc--cc------------hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHH
Confidence 999984310 00 0001 3344322221 122478899999999988875
|
|
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0017 Score=59.13 Aligned_cols=116 Identities=17% Similarity=0.132 Sum_probs=68.3
Q ss_pred ccceeEEEEeee-ccceeeeecCCccccchhhh-ccc-------cCCCEEEEeeeccccccccccCcccccHHHHHHHHH
Q psy6623 89 TTGIVEVHFSFK-NLNFKLFDVGGQRSERKKWI-HCF-------EDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFD 159 (262)
Q Consensus 89 T~Gi~~~~~~~~-~~~~~i~D~~Gq~~~r~~w~-~~f-------~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~ 159 (262)
|..-....+.+. +..+-+-||-|=-+.-.-|. .-| ..+|.+|.|+|.|+ . ...+-++.-.
T Consensus 226 TLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSd----------p-~~~~~~~~v~ 294 (411)
T COG2262 226 TLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASD----------P-EILEKLEAVE 294 (411)
T ss_pred cccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCC----------h-hHHHHHHHHH
Confidence 333334555554 56788889998433222121 112 46999999999998 2 3333333344
Q ss_pred HHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 160 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 160 ~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.++..-...+.|+|+++||+|+.........+... .+ ...++||++|.|++.+...
T Consensus 295 ~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~---------------------~~-~~v~iSA~~~~gl~~L~~~ 350 (411)
T COG2262 295 DVLAEIGADEIPIILVLNKIDLLEDEEILAELERG---------------------SP-NPVFISAKTGEGLDLLRER 350 (411)
T ss_pred HHHHHcCCCCCCEEEEEecccccCchhhhhhhhhc---------------------CC-CeEEEEeccCcCHHHHHHH
Confidence 44443334569999999999976432111111110 01 2567999999999887753
|
|
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.00043 Score=59.49 Aligned_cols=122 Identities=15% Similarity=0.042 Sum_probs=57.1
Q ss_pred ceeeeecCCccccchhhhccc--------cCCCEEEEeeeccccccccccCcccccH-HHHHHHHHHHHhCCCCCCCeEE
Q psy6623 103 NFKLFDVGGQRSERKKWIHCF--------EDVTAIIFCVAMSEYDQVLHEDETTNRM-QESLKLFDSICNNKWFTDTSII 173 (262)
Q Consensus 103 ~~~i~D~~Gq~~~r~~w~~~f--------~~~~~iIfv~dls~~d~~~~e~~~~~~l-~e~~~~~~~i~~~~~~~~~pii 173 (262)
.+-++||+||-+.-..|...- ...-++++++|.+-... ...+ ...+.-+..+++ -+.|.+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~-------~~~f~s~~L~s~s~~~~----~~lP~v 160 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSD-------PSKFVSSLLLSLSIMLR----LELPHV 160 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SS-------HHHHHHHHHHHHHHHHH----HTSEEE
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccC-------hhhHHHHHHHHHHHHhh----CCCCEE
Confidence 677999999988777665544 55678999999886221 1122 222222222332 268999
Q ss_pred EEeeCCchhhhhhccCCCcccCCCCCCCCc-----ch--hHHHHHHhhh-ccc-eeecccccccceeeeeehh
Q psy6623 174 LFLNKKDLFEEKIKKSPLTICFPEYAGKRP-----GE--RNRMQESLKL-FDS-ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 174 l~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~-----~~--~~~i~~~f~~-~~~-~~~~tsA~d~~~I~~~f~~ 237 (262)
.++||+|+..+.... ..+++.+...-.. .. ..-+...+.+ ..+ .++..|+++++++..++..
T Consensus 161 nvlsK~Dl~~~~~~~--~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~ 231 (238)
T PF03029_consen 161 NVLSKIDLLSKYLEF--ILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAA 231 (238)
T ss_dssp EEE--GGGS-HHHHH--HHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHH
T ss_pred EeeeccCcccchhHH--HHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHH
Confidence 999999998743111 1111111100000 00 0111111111 223 5788999999999988853
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0012 Score=60.32 Aligned_cols=83 Identities=16% Similarity=0.168 Sum_probs=48.9
Q ss_pred cCCC-EEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCC
Q psy6623 124 EDVT-AIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKR 202 (262)
Q Consensus 124 ~~~~-~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~ 202 (262)
...+ .|++|+|+.++. .++ ...+.... .+.|+++++||+||.........+
T Consensus 67 ~~~~~lIv~VVD~~D~~---------~s~---~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i----------- 118 (365)
T PRK13796 67 GDSDALVVNVVDIFDFN---------GSW---IPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKV----------- 118 (365)
T ss_pred cccCcEEEEEEECccCC---------Cch---hHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHH-----------
Confidence 3344 889999998843 222 22233332 257899999999996421100000
Q ss_pred cchhHHHHHHhhhccc---eeecccccccceeeeeehh
Q psy6623 203 PGERNRMQESLKLFDS---ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 203 ~~~~~~i~~~f~~~~~---~~~~tsA~d~~~I~~~f~~ 237 (262)
.+++...+....+ .++.+||+++.||+++++.
T Consensus 119 ---~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~ 153 (365)
T PRK13796 119 ---KNWLRQEAKELGLRPVDVVLISAQKGHGIDELLEA 153 (365)
T ss_pred ---HHHHHHHHHhcCCCcCcEEEEECCCCCCHHHHHHH
Confidence 2333333332222 4678999999999988864
|
|
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0042 Score=55.42 Aligned_cols=142 Identities=17% Similarity=0.205 Sum_probs=80.2
Q ss_pred HHHhhccccCCCCCCcCcccccee-eecccceeEEEEeeeccceeeeecCCccccch-------hhhccccCCCEEEEee
Q psy6623 62 YFLDDLDRLGAKEYQPTEQDILRT-RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERK-------KWIHCFEDVTAIIFCV 133 (262)
Q Consensus 62 yfl~~l~ri~~~~y~pt~~Dil~~-~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~-------~w~~~f~~~~~iIfv~ 133 (262)
.|++.+.+ -+|.+.|.--+ -.|..|+... ..+-.|.+=|++|--.-.+ ....+.+.+..+++|+
T Consensus 174 Tlls~vS~-----AkPKIadYpFTTL~PnLGvV~~---~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hvi 245 (369)
T COG0536 174 TLLSAVSA-----AKPKIADYPFTTLVPNLGVVRV---DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVI 245 (369)
T ss_pred HHHHHHhh-----cCCcccCCccccccCcccEEEe---cCCCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEE
Confidence 56665443 23444333222 2677786543 3456688899987522111 2233457789999999
Q ss_pred eccccccccccCcccccHHHHHHHHHHHHh-CCCCCCCeEEEEeeCCchhh--hhhccCCCcccCCCCCCCCcchhHHHH
Q psy6623 134 AMSEYDQVLHEDETTNRMQESLKLFDSICN-NKWFTDTSIILFLNKKDLFE--EKIKKSPLTICFPEYAGKRPGERNRMQ 210 (262)
Q Consensus 134 dls~~d~~~~e~~~~~~l~e~~~~~~~i~~-~~~~~~~piil~~NK~Dl~~--~kl~~~~l~~~fp~~~g~~~~~~~~i~ 210 (262)
|++..+. .+-.++...+..++-. ++.+.+.|.+|++||+|+.. +.+.. + .+++.
T Consensus 246 D~s~~~~-------~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~--~--------------~~~l~ 302 (369)
T COG0536 246 DLSPIDG-------RDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEE--L--------------KKALA 302 (369)
T ss_pred ecCcccC-------CCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHH--H--------------HHHHH
Confidence 9998432 1223333333333333 25677899999999999542 21110 0 12222
Q ss_pred HHhhhccceeec-ccccccceeeeeehh
Q psy6623 211 ESLKLFDSICNN-KWFTDTSIILFLNKK 237 (262)
Q Consensus 211 ~~f~~~~~~~~~-tsA~d~~~I~~~f~~ 237 (262)
+. ..+.... +||.++++++.+...
T Consensus 303 ~~---~~~~~~~~ISa~t~~g~~~L~~~ 327 (369)
T COG0536 303 EA---LGWEVFYLISALTREGLDELLRA 327 (369)
T ss_pred Hh---cCCCcceeeehhcccCHHHHHHH
Confidence 21 1222222 999999999988865
|
|
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0019 Score=64.31 Aligned_cols=69 Identities=20% Similarity=0.245 Sum_probs=51.3
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
++..+++.||+|+..+........+.+|++|+|+|... .-.......++..... +.|.+++.||+
T Consensus 85 ~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~-----------g~~~~t~~~~~~~~~~----~~~~iv~iNK~ 149 (731)
T PRK07560 85 KEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVE-----------GVMPQTETVLRQALRE----RVKPVLFINKV 149 (731)
T ss_pred CcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCC-----------CCCccHHHHHHHHHHc----CCCeEEEEECc
Confidence 36778999999999887777778899999999999775 1223344455544332 45778999999
Q ss_pred chhh
Q psy6623 180 DLFE 183 (262)
Q Consensus 180 Dl~~ 183 (262)
|+..
T Consensus 150 D~~~ 153 (731)
T PRK07560 150 DRLI 153 (731)
T ss_pred hhhc
Confidence 9864
|
|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0047 Score=57.03 Aligned_cols=36 Identities=25% Similarity=0.309 Sum_probs=27.1
Q ss_pred cceeeeecCCc----cccchhhhcc---ccCCCEEEEeeeccc
Q psy6623 102 LNFKLFDVGGQ----RSERKKWIHC---FEDVTAIIFCVAMSE 137 (262)
Q Consensus 102 ~~~~i~D~~Gq----~~~r~~w~~~---f~~~~~iIfv~dls~ 137 (262)
..+++||++|. ...+.+-..+ +++++++++|+|++.
T Consensus 72 ~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~ 114 (396)
T PRK09602 72 IPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASG 114 (396)
T ss_pred eeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 66899999994 3334433344 799999999999983
|
|
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0061 Score=58.85 Aligned_cols=114 Identities=16% Similarity=0.130 Sum_probs=76.8
Q ss_pred ccceeEEEEeeeccceeeeecCCccccc------hhhhccc--cCCCEEEEeeeccccccccccCcccccHHHHHHHHHH
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRSER------KKWIHCF--EDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDS 160 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~~r------~~w~~~f--~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~ 160 (262)
|+--.+..+..++..+++.|++|--+.. +.-..|. .+.|.||-|+|.++ ++.++.+.-+
T Consensus 37 TVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtn-------------LeRnLyltlQ 103 (653)
T COG0370 37 TVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATN-------------LERNLYLTLQ 103 (653)
T ss_pred eEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccch-------------HHHHHHHHHH
Confidence 3334455566778889999999964432 2334444 45799999999887 4555666666
Q ss_pred HHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 161 ICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 161 i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+.+- +.|+++++|+.|..+++-..-+. +-+.+ ...+.+..|+|+.|+|++++.++
T Consensus 104 LlE~----g~p~ilaLNm~D~A~~~Gi~ID~---------------~~L~~---~LGvPVv~tvA~~g~G~~~l~~~ 158 (653)
T COG0370 104 LLEL----GIPMILALNMIDEAKKRGIRIDI---------------EKLSK---LLGVPVVPTVAKRGEGLEELKRA 158 (653)
T ss_pred HHHc----CCCeEEEeccHhhHHhcCCcccH---------------HHHHH---HhCCCEEEEEeecCCCHHHHHHH
Confidence 6542 68899999999997653222111 11111 14578899999999999888764
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0068 Score=48.20 Aligned_cols=51 Identities=25% Similarity=0.275 Sum_probs=31.6
Q ss_pred CCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehh
Q psy6623 168 TDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 168 ~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+.|+++++||+|+..+.. + ..++ ..+.. ....++.+||+++.++.++.+.
T Consensus 28 ~~~p~IiVlNK~Dl~~~~~----~--------------~~~~-~~~~~~~~~~ii~vSa~~~~gi~~L~~~ 79 (155)
T cd01849 28 KGKKLILVLNKADLVPKEV----L--------------RKWL-AYLRHSYPTIPFKISATNGQGIEKKESA 79 (155)
T ss_pred CCCCEEEEEechhcCCHHH----H--------------HHHH-HHHHhhCCceEEEEeccCCcChhhHHHH
Confidence 3689999999999853210 0 1111 11111 1233577999999999888863
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >KOG1532|consensus | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0069 Score=52.62 Aligned_cols=124 Identities=14% Similarity=0.119 Sum_probs=65.1
Q ss_pred cceeeeecCCccccchhhhc-------cc--cCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeE
Q psy6623 102 LNFKLFDVGGQRSERKKWIH-------CF--EDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSI 172 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~~w~~-------~f--~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pi 172 (262)
.++.+.||+||-. --.|.. -+ ....+|+||+|...- .+...+-..+-.-.+++- -.+.|+
T Consensus 116 ~~~~liDTPGQIE-~FtWSAsGsIIte~lass~ptvv~YvvDt~rs-------~~p~tFMSNMlYAcSily---ktklp~ 184 (366)
T KOG1532|consen 116 FDYVLIDTPGQIE-AFTWSASGSIITETLASSFPTVVVYVVDTPRS-------TSPTTFMSNMLYACSILY---KTKLPF 184 (366)
T ss_pred cCEEEEcCCCceE-EEEecCCccchHhhHhhcCCeEEEEEecCCcC-------CCchhHHHHHHHHHHHHH---hccCCe
Confidence 4567778888732 112321 11 235678899997751 122334333333334432 246899
Q ss_pred EEEeeCCchhhhhhccC---C---CcccC----CCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 173 ILFLNKKDLFEEKIKKS---P---LTICF----PEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 173 il~~NK~Dl~~~kl~~~---~---l~~~f----p~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+++||+|+.+...... + +.... .+|-++-...+......|- +.+....+||.+|.|....|.+
T Consensus 185 ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY-~~lrtv~VSs~tG~G~ddf~~a 258 (366)
T KOG1532|consen 185 IVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFY-RSLRTVGVSSVTGEGFDDFFTA 258 (366)
T ss_pred EEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHH-hhCceEEEecccCCcHHHHHHH
Confidence 99999999865432211 0 00000 0010000000333333332 4566778999999999999975
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.012 Score=48.74 Aligned_cols=85 Identities=12% Similarity=0.175 Sum_probs=55.9
Q ss_pred cccceeEEEEeeeccceeeeecCCccccc-----------hhhhccccCCCEEEEeeeccccccccccCcccccHHHHHH
Q psy6623 88 KTTGIVEVHFSFKNLNFKLFDVGGQRSER-----------KKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLK 156 (262)
Q Consensus 88 pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r-----------~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~ 156 (262)
.|..+......+++..+.+.||+|-.... +.+..+..+++++|||+++..+ ...-...++
T Consensus 35 ~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~---------t~~d~~~l~ 105 (196)
T cd01852 35 VTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRF---------TEEEEQAVE 105 (196)
T ss_pred cccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCc---------CHHHHHHHH
Confidence 34455555666788899999999954321 1122345789999999998763 234455667
Q ss_pred HHHHHHhCCCCCCCeEEEEeeCCchhh
Q psy6623 157 LFDSICNNKWFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 157 ~~~~i~~~~~~~~~piil~~NK~Dl~~ 183 (262)
.+.+++.... -.++++++|+.|...
T Consensus 106 ~l~~~fg~~~--~~~~ivv~T~~d~l~ 130 (196)
T cd01852 106 TLQELFGEKV--LDHTIVLFTRGDDLE 130 (196)
T ss_pred HHHHHhChHh--HhcEEEEEECccccC
Confidence 7766664322 247888899998654
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.0077 Score=55.41 Aligned_cols=75 Identities=21% Similarity=0.410 Sum_probs=56.6
Q ss_pred eEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeE
Q psy6623 93 VEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSI 172 (262)
Q Consensus 93 ~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pi 172 (262)
++..|.+++..+++.||+|++-|..-.-.-.--+|++|.|+|... --=...+++| ++|. +.++||
T Consensus 72 SVMqF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAK-----------GiE~qT~KLf-eVcr---lR~iPI 136 (528)
T COG4108 72 SVMQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAK-----------GIEPQTLKLF-EVCR---LRDIPI 136 (528)
T ss_pred eEEEeccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEeccc-----------CccHHHHHHH-HHHh---hcCCce
Confidence 456788899999999999999877655444557999999999874 2223445555 4553 578999
Q ss_pred EEEeeCCchh
Q psy6623 173 ILFLNKKDLF 182 (262)
Q Consensus 173 il~~NK~Dl~ 182 (262)
+-|.||.|..
T Consensus 137 ~TFiNKlDR~ 146 (528)
T COG4108 137 FTFINKLDRE 146 (528)
T ss_pred EEEeeccccc
Confidence 9999999963
|
|
| >KOG1191|consensus | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.0083 Score=55.89 Aligned_cols=121 Identities=19% Similarity=0.193 Sum_probs=70.1
Q ss_pred eeEEEEeeeccceeeeecCCccccchhh---------hccccCCCEEEEeeec--cccccccccCcccccHHHHHHHHHH
Q psy6623 92 IVEVHFSFKNLNFKLFDVGGQRSERKKW---------IHCFEDVTAIIFCVAM--SEYDQVLHEDETTNRMQESLKLFDS 160 (262)
Q Consensus 92 i~~~~~~~~~~~~~i~D~~Gq~~~r~~w---------~~~f~~~~~iIfv~dl--s~~d~~~~e~~~~~~l~e~~~~~~~ 160 (262)
.-+..++++++++.+.||+|-+..+..- ..-.+.+|.|++|+|. +++ .+-....+.+..
T Consensus 306 aiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t----------~sd~~i~~~l~~ 375 (531)
T KOG1191|consen 306 AIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDT----------ESDLKIARILET 375 (531)
T ss_pred hheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEeccccccc----------ccchHHHHHHHH
Confidence 4567788999999999999987722211 1234679999999998 332 111111122222
Q ss_pred HHh-----CCCCCCCeEEEEeeCCchhhhhhccCCC-cccCCCCCCCCcchhHHHHHHhhhccceeec-ccccccceeee
Q psy6623 161 ICN-----NKWFTDTSIILFLNKKDLFEEKIKKSPL-TICFPEYAGKRPGERNRMQESLKLFDSICNN-KWFTDTSIILF 233 (262)
Q Consensus 161 i~~-----~~~~~~~piil~~NK~Dl~~~kl~~~~l-~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~-tsA~d~~~I~~ 233 (262)
.-. .+.....+++++.||.|+.. ++...+. -..+|.-.|. -...+|. +|++++++++.
T Consensus 376 ~~~g~~~~~~~~~~~~~i~~~nk~D~~s-~~~~~~~~~~~~~~~~~~--------------~~~~i~~~vs~~tkeg~~~ 440 (531)
T KOG1191|consen 376 EGVGLVVIVNKMEKQRIILVANKSDLVS-KIPEMTKIPVVYPSAEGR--------------SVFPIVVEVSCTTKEGCER 440 (531)
T ss_pred hccceEEEeccccccceEEEechhhccC-ccccccCCceeccccccC--------------cccceEEEeeechhhhHHH
Confidence 211 11124579999999999865 2221111 1111211121 1233454 99999999998
Q ss_pred eehh
Q psy6623 234 LNKK 237 (262)
Q Consensus 234 ~f~~ 237 (262)
+-.+
T Consensus 441 L~~a 444 (531)
T KOG1191|consen 441 LSTA 444 (531)
T ss_pred HHHH
Confidence 8764
|
|
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.0061 Score=45.76 Aligned_cols=55 Identities=13% Similarity=0.113 Sum_probs=36.8
Q ss_pred chhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhh
Q psy6623 116 RKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 116 r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~ 183 (262)
......+++++++++.|++.++ .+++... |...+... .-.+.|+++++||.|+..
T Consensus 37 ~~~~~~~~~s~~~~~~v~~~~~----------~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~ 91 (124)
T smart00010 37 DVYDPTSYESFDVVLQCWRVDD----------RDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEE 91 (124)
T ss_pred hhccccccCCCCEEEEEEEccC----------HHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHh
Confidence 3344667889999999999887 4444332 33333322 224688999999999854
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.0098 Score=58.54 Aligned_cols=83 Identities=17% Similarity=0.169 Sum_probs=62.2
Q ss_pred eecccceeEEEEeeec-cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 86 RVKTTGIVEVHFSFKN-LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~-~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
|--|+.....++.+++ ..+++.||.|+--|-.--..-.+-+|++|.|+|..+ --...+...|+....
T Consensus 59 RGITI~saa~s~~~~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdave-----------GV~~QTEtv~rqa~~- 126 (697)
T COG0480 59 RGITITSAATTLFWKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVE-----------GVEPQTETVWRQADK- 126 (697)
T ss_pred cCCEEeeeeeEEEEcCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCC-----------CeeecHHHHHHHHhh-
Confidence 3444444555677785 999999999998877766667788999999999886 334445566666654
Q ss_pred CCCCCCeEEEEeeCCchhh
Q psy6623 165 KWFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~~ 183 (262)
.++|.++|.||+|...
T Consensus 127 ---~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 127 ---YGVPRILFVNKMDRLG 142 (697)
T ss_pred ---cCCCeEEEEECccccc
Confidence 3799999999999754
|
|
| >KOG1423|consensus | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.012 Score=51.97 Aligned_cols=121 Identities=16% Similarity=0.118 Sum_probs=69.0
Q ss_pred eeccceeeeecCCccccchhh------------hccccCCCEEEEeeeccccccccccCcccccHHH-HHHHHHHHHhCC
Q psy6623 99 FKNLNFKLFDVGGQRSERKKW------------IHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQE-SLKLFDSICNNK 165 (262)
Q Consensus 99 ~~~~~~~i~D~~Gq~~~r~~w------------~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e-~~~~~~~i~~~~ 165 (262)
-++..+-++||.|--.-.... .+-..++|+|+.|+|.++ +.+-++- .+..++..
T Consensus 117 s~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~---------tr~~l~p~vl~~l~~y---- 183 (379)
T KOG1423|consen 117 SGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASA---------TRTPLHPRVLHMLEEY---- 183 (379)
T ss_pred cCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccC---------CcCccChHHHHHHHHH----
Confidence 366789999999953322211 123467999999999996 1222221 22222222
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhcc----------c----eeeccccccccee
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFD----------S----ICNNKWFTDTSII 231 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~----------~----~~~~tsA~d~~~I 231 (262)
.+.|-+|+.||.|.+..|..--++..... +|.-+...--+.++|...+ | -++.+||+.|+||
T Consensus 184 --s~ips~lvmnkid~~k~k~~Ll~l~~~Lt--~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~Gi 259 (379)
T KOG1423|consen 184 --SKIPSILVMNKIDKLKQKRLLLNLKDLLT--NGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGI 259 (379)
T ss_pred --hcCCceeeccchhcchhhhHHhhhHHhcc--ccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCH
Confidence 46788999999998765533222221111 0100000223344555432 3 1678999999999
Q ss_pred eeeeh
Q psy6623 232 LFLNK 236 (262)
Q Consensus 232 ~~~f~ 236 (262)
+++=+
T Consensus 260 kdlkq 264 (379)
T KOG1423|consen 260 KDLKQ 264 (379)
T ss_pred HHHHH
Confidence 98874
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.004 Score=50.41 Aligned_cols=82 Identities=16% Similarity=-0.027 Sum_probs=47.0
Q ss_pred hccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCC
Q psy6623 120 IHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYA 199 (262)
Q Consensus 120 ~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~ 199 (262)
....+++|.|++|+|.++... ..-. ..... ..+.|+++++||+|+..+... ...
T Consensus 14 ~~~i~~aD~il~v~D~~~~~~--------~~~~---~i~~~------~~~k~~ilVlNK~Dl~~~~~~-~~~-------- 67 (171)
T cd01856 14 KEKLKLVDLVIEVRDARIPLS--------SRNP---LLEKI------LGNKPRIIVLNKADLADPKKT-KKW-------- 67 (171)
T ss_pred HHHHhhCCEEEEEeeccCccC--------cCCh---hhHhH------hcCCCEEEEEehhhcCChHHH-HHH--------
Confidence 345689999999999875210 0001 11111 134789999999998632100 000
Q ss_pred CCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 200 GKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 200 g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+++.. ....++.+||+++.|++++.+.
T Consensus 68 ------~~~~~~----~~~~vi~iSa~~~~gi~~L~~~ 95 (171)
T cd01856 68 ------LKYFES----KGEKVLFVNAKSGKGVKKLLKA 95 (171)
T ss_pred ------HHHHHh----cCCeEEEEECCCcccHHHHHHH
Confidence 111111 1123567999999999887753
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.015 Score=45.86 Aligned_cols=94 Identities=18% Similarity=0.252 Sum_probs=56.8
Q ss_pred eeecCCccccchhhhc----cccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCch
Q psy6623 106 LFDVGGQRSERKKWIH----CFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181 (262)
Q Consensus 106 i~D~~Gq~~~r~~w~~----~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl 181 (262)
+.||+|.--+.+.+-+ .-.+|+.|++|.|.++-... +.-. |.. .+ +.|+|=|.||+|+
T Consensus 40 ~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~---------~pP~---fa~-----~f-~~pvIGVITK~Dl 101 (143)
T PF10662_consen 40 TIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSV---------FPPG---FAS-----MF-NKPVIGVITKIDL 101 (143)
T ss_pred EEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCcc---------CCch---hhc-----cc-CCCEEEEEECccC
Confidence 5899997555443322 33689999999999972211 1110 111 12 4799999999999
Q ss_pred h--hhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 182 F--EEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 182 ~--~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
. .+.+... .++++.-. -+. ++.+||.+|+||+++.+
T Consensus 102 ~~~~~~i~~a----------------~~~L~~aG-~~~--if~vS~~~~eGi~eL~~ 139 (143)
T PF10662_consen 102 PSDDANIERA----------------KKWLKNAG-VKE--IFEVSAVTGEGIEELKD 139 (143)
T ss_pred ccchhhHHHH----------------HHHHHHcC-CCC--eEEEECCCCcCHHHHHH
Confidence 8 3221110 12222111 033 48899999999998873
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >KOG0468|consensus | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.015 Score=56.03 Aligned_cols=69 Identities=13% Similarity=0.219 Sum_probs=53.3
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
..-+++.||.|+-.+..-...-++-++++++|+|..+ .-+-..-.+++...+ .+.|++++.||.|
T Consensus 196 S~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~E-----------GVmlntEr~ikhaiq----~~~~i~vviNKiD 260 (971)
T KOG0468|consen 196 SYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAE-----------GVMLNTERIIKHAIQ----NRLPIVVVINKVD 260 (971)
T ss_pred eeeeeeecCCCcccchHHHHHHhhhcceEEEEEEccc-----------CceeeHHHHHHHHHh----ccCcEEEEEehhH
Confidence 3568999999999998877888899999999999986 333333444455544 3689999999999
Q ss_pred hhhh
Q psy6623 181 LFEE 184 (262)
Q Consensus 181 l~~~ 184 (262)
.+-.
T Consensus 261 RLil 264 (971)
T KOG0468|consen 261 RLIL 264 (971)
T ss_pred HHHH
Confidence 8643
|
|
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.042 Score=50.65 Aligned_cols=123 Identities=16% Similarity=0.100 Sum_probs=75.9
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+--|+.+....+..++..+.+.|+.|++.+-+--..-..+.+.+++|++..+ .-....-|.+..++.
T Consensus 34 RG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~de--------Gl~~qtgEhL~iLdl----- 100 (447)
T COG3276 34 RGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADE--------GLMAQTGEHLLILDL----- 100 (447)
T ss_pred cCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCcc--------CcchhhHHHHHHHHh-----
Confidence 4455556666666677799999999999876655555668999999999854 002233333333322
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+.....+++++|+|..++...... ++-|.....-....++.+||++|+||.++=+.
T Consensus 101 -lgi~~giivltk~D~~d~~r~e~~---------------i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~ 156 (447)
T COG3276 101 -LGIKNGIIVLTKADRVDEARIEQK---------------IKQILADLSLANAKIFKTSAKTGRGIEELKNE 156 (447)
T ss_pred -cCCCceEEEEeccccccHHHHHHH---------------HHHHHhhcccccccccccccccCCCHHHHHHH
Confidence 344567899999999754210000 11111111112344578999999999888764
|
|
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.019 Score=47.95 Aligned_cols=99 Identities=15% Similarity=0.082 Sum_probs=54.0
Q ss_pred cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeE--EEEeeCC
Q psy6623 102 LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSI--ILFLNKK 179 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pi--il~~NK~ 179 (262)
....+.++.|..--...+. .-++++|.|+|..+.++. .. ... ..+.+ ++++||+
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~----------~~---~~~--------~qi~~ad~~~~~k~ 147 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKI----------PR---KGG--------PGITRSDLLVINKI 147 (199)
T ss_pred CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhh----------hh---hhH--------hHhhhccEEEEEhh
Confidence 3444666666322222221 125779999999885432 10 000 12233 7889999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhh--hccceeecccccccceeeeeehhhHHHhh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLK--LFDSICNNKWFTDTSIILFLNKKDLFEEK 243 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~--~~~~~~~~tsA~d~~~I~~~f~~~lL~~~ 243 (262)
|+.+.. ... ...+.+..+ +....+++|||++|+||.++|+ ++.+.
T Consensus 148 d~~~~~--~~~---------------~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~--~i~~~ 194 (199)
T TIGR00101 148 DLAPMV--GAD---------------LGVMERDAKKMRGEKPFIFTNLKTKEGLDTVID--WIEHY 194 (199)
T ss_pred hccccc--ccc---------------HHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHH--HHHhh
Confidence 996410 000 111222111 1345678999999999999994 55543
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.021 Score=50.05 Aligned_cols=81 Identities=14% Similarity=0.049 Sum_probs=46.2
Q ss_pred ccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCC
Q psy6623 121 HCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAG 200 (262)
Q Consensus 121 ~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g 200 (262)
...+.+|.||+|+|..+-. ..-. ..+...+ .+.|+++|+||+|+..+.. ....
T Consensus 17 ~~l~~aDvVl~V~Dar~p~---------~~~~---~~i~~~l-----~~kp~IiVlNK~DL~~~~~-~~~~--------- 69 (276)
T TIGR03596 17 EKLKLVDVVIEVLDARIPL---------SSRN---PMIDEIR-----GNKPRLIVLNKADLADPAV-TKQW--------- 69 (276)
T ss_pred HHHhhCCEEEEEEeCCCCC---------CCCC---hhHHHHH-----CCCCEEEEEEccccCCHHH-HHHH---------
Confidence 4568899999999986510 1111 1112222 2579999999999853210 0000
Q ss_pred CCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 201 KRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 201 ~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+++.+ ....+..+||+++.++..+.+.
T Consensus 70 -----~~~~~~----~~~~vi~iSa~~~~gi~~L~~~ 97 (276)
T TIGR03596 70 -----LKYFEE----KGIKALAINAKKGKGVKKIIKA 97 (276)
T ss_pred -----HHHHHH----cCCeEEEEECCCcccHHHHHHH
Confidence 112211 1233567889999888877653
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.096 Score=44.45 Aligned_cols=66 Identities=11% Similarity=0.154 Sum_probs=40.5
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCe-EEEEeeC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTS-IILFLNK 178 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~p-iil~~NK 178 (262)
++.++.+.|++|.- .... ...+.++++++|+|.+. .-. ......+..+. . .+.| +++++||
T Consensus 81 ~~~~i~~vDtPg~~--~~~l-~~ak~aDvVllviDa~~----------~~~-~~~~~i~~~l~-~---~g~p~vi~VvnK 142 (225)
T cd01882 81 KKRRLTFIECPNDI--NAMI-DIAKVADLVLLLIDASF----------GFE-METFEFLNILQ-V---HGFPRVMGVLTH 142 (225)
T ss_pred CCceEEEEeCCchH--HHHH-HHHHhcCEEEEEEecCc----------CCC-HHHHHHHHHHH-H---cCCCeEEEEEec
Confidence 56788999999864 2222 23578999999999875 111 11222333222 2 2356 4569999
Q ss_pred Cchhh
Q psy6623 179 KDLFE 183 (262)
Q Consensus 179 ~Dl~~ 183 (262)
.|+..
T Consensus 143 ~D~~~ 147 (225)
T cd01882 143 LDLFK 147 (225)
T ss_pred cccCC
Confidence 99863
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.035 Score=48.97 Aligned_cols=81 Identities=14% Similarity=0.053 Sum_probs=46.4
Q ss_pred ccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCC
Q psy6623 121 HCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAG 200 (262)
Q Consensus 121 ~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g 200 (262)
...+.+|.||+|+|..+.. ..+- ..+...+ .+.|+++++||+|+..+.. ....
T Consensus 20 ~~l~~aDvIL~VvDar~p~--------~~~~----~~l~~~~-----~~kp~iiVlNK~DL~~~~~-~~~~--------- 72 (287)
T PRK09563 20 ENLKLVDVVIEVLDARIPL--------SSEN----PMIDKII-----GNKPRLLILNKSDLADPEV-TKKW--------- 72 (287)
T ss_pred HHhhhCCEEEEEEECCCCC--------CCCC----hhHHHHh-----CCCCEEEEEEchhcCCHHH-HHHH---------
Confidence 3467899999999986511 0111 1222222 2578999999999853210 0000
Q ss_pred CCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 201 KRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 201 ~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+++. .....+..+||+++.++..+.+.
T Consensus 73 -----~~~~~----~~~~~vi~vSa~~~~gi~~L~~~ 100 (287)
T PRK09563 73 -----IEYFE----EQGIKALAINAKKGQGVKKILKA 100 (287)
T ss_pred -----HHHHH----HcCCeEEEEECCCcccHHHHHHH
Confidence 11221 12234567888888888877653
|
|
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.042 Score=45.92 Aligned_cols=53 Identities=9% Similarity=-0.086 Sum_probs=32.7
Q ss_pred CCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 169 DTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 169 ~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
..|.++++||+|+..+.- ..+... ...+.... ....++.+||++|.||.++|+
T Consensus 148 ~~a~iiv~NK~Dl~~~~~--~~~~~~-----------~~~l~~~~--~~~~i~~~Sa~~g~gv~~l~~ 200 (207)
T TIGR00073 148 KEADLIVINKADLAEAVG--FDVEKM-----------KADAKKIN--PEAEIILMSLKTGEGLDEWLE 200 (207)
T ss_pred hhCCEEEEEHHHccccch--hhHHHH-----------HHHHHHhC--CCCCEEEEECCCCCCHHHHHH
Confidence 467799999999864210 000000 22222211 336689999999999999995
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.11 Score=43.24 Aligned_cols=102 Identities=18% Similarity=0.247 Sum_probs=56.4
Q ss_pred eeeeecCCc------cccchhh----hcccc---CCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCC
Q psy6623 104 FKLFDVGGQ------RSERKKW----IHCFE---DVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDT 170 (262)
Q Consensus 104 ~~i~D~~Gq------~~~r~~w----~~~f~---~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~ 170 (262)
+.+.|++|- ...+..| ..|++ +..+++.++|+-.. .... -.+.++-+.. .+.
T Consensus 72 ~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~---------~~~~--D~em~~~l~~----~~i 136 (200)
T COG0218 72 LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHP---------PKDL--DREMIEFLLE----LGI 136 (200)
T ss_pred EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCC---------CcHH--HHHHHHHHHH----cCC
Confidence 789999983 3445566 44664 36677888887641 1111 1123322322 368
Q ss_pred eEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh----ccceeecccccccceeeeeeh
Q psy6623 171 SIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL----FDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 171 piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~----~~~~~~~tsA~d~~~I~~~f~ 236 (262)
|++|++||+|-.. .....+ ....+.+.+.- ..+ +..+|+..+.||+++-+
T Consensus 137 ~~~vv~tK~DKi~----~~~~~k-----------~l~~v~~~l~~~~~~~~~-~~~~ss~~k~Gi~~l~~ 190 (200)
T COG0218 137 PVIVVLTKADKLK----KSERNK-----------QLNKVAEELKKPPPDDQW-VVLFSSLKKKGIDELKA 190 (200)
T ss_pred CeEEEEEccccCC----hhHHHH-----------HHHHHHHHhcCCCCccce-EEEEecccccCHHHHHH
Confidence 9999999999654 111100 02233322211 222 66778888888777664
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.087 Score=47.98 Aligned_cols=81 Identities=14% Similarity=0.123 Sum_probs=44.2
Q ss_pred cccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCC
Q psy6623 122 CFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGK 201 (262)
Q Consensus 122 ~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~ 201 (262)
...|+|.+++|+++.. +.+...++..+ ..+. ..+++.+|++||+||..+. .. .
T Consensus 109 iaANvD~vliV~s~~p-------~~~~~~ldr~L----~~a~---~~~i~piIVLNK~DL~~~~-~~--~---------- 161 (356)
T PRK01889 109 IAANVDTVFIVCSLNH-------DFNLRRIERYL----ALAW---ESGAEPVIVLTKADLCEDA-EE--K---------- 161 (356)
T ss_pred EEEeCCEEEEEEecCC-------CCChhHHHHHH----HHHH---HcCCCEEEEEEChhcCCCH-HH--H----------
Confidence 3578999999999852 11112222222 2222 1357778999999996421 00 0
Q ss_pred CcchhHHHHHHhhhccceeecccccccceeeeee
Q psy6623 202 RPGERNRMQESLKLFDSICNNKWFTDTSIILFLN 235 (262)
Q Consensus 202 ~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f 235 (262)
.+.+.+. .....++.+||+++.++..+.
T Consensus 162 ----~~~~~~~--~~g~~Vi~vSa~~g~gl~~L~ 189 (356)
T PRK01889 162 ----IAEVEAL--APGVPVLAVSALDGEGLDVLA 189 (356)
T ss_pred ----HHHHHHh--CCCCcEEEEECCCCccHHHHH
Confidence 1111111 122445678888888876654
|
|
| >KOG0705|consensus | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.078 Score=50.24 Aligned_cols=135 Identities=13% Similarity=0.122 Sum_probs=85.3
Q ss_pred ccccCCCCCCcCccccceeeecccc-eeEEEEee-eccceeeeecCCccccchhhhccccCCCEEEEeeecccccccccc
Q psy6623 67 LDRLGAKEYQPTEQDILRTRVKTTG-IVEVHFSF-KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHE 144 (262)
Q Consensus 67 l~ri~~~~y~pt~~Dil~~~~pT~G-i~~~~~~~-~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e 144 (262)
+.|+....|.+.+ .|--| +..+.+.. +..-+.+.|.||.. -..|-..++++|||+.+-+
T Consensus 47 vhr~ltgty~~~e-------~~e~~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIfvf~~~d------- 107 (749)
T KOG0705|consen 47 VHRYLTGTYTQDE-------SPEGGRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFVFSVED------- 107 (749)
T ss_pred eeeeccceecccc-------CCcCccceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEEEEEecc-------
Confidence 6777788888755 44444 22222222 44667889998832 2346678999999999988
Q ss_pred CcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeeccc
Q psy6623 145 DETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKW 224 (262)
Q Consensus 145 ~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~ts 224 (262)
.++++....+...+.....-...|+++++.+.-. ..+....... ....+...+ .+++.+++||
T Consensus 108 ---~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~i-S~~~~rv~~d-----------a~~r~l~~~--~krcsy~et~ 170 (749)
T KOG0705|consen 108 ---EQSFQAVQALAHEMSSYRNISDLPLILVGTQDHI-SAKRPRVITD-----------DRARQLSAQ--MKRCSYYETC 170 (749)
T ss_pred ---ccCHHHHHHHHhhcccccccccchHHhhcCcchh-hcccccccch-----------HHHHHHHHh--cCccceeecc
Confidence 6777777666666665544556788888775433 2221111110 001111111 1668899999
Q ss_pred ccccceeeeeehh
Q psy6623 225 FTDTSIILFLNKK 237 (262)
Q Consensus 225 A~d~~~I~~~f~~ 237 (262)
|+.|.++..+|+.
T Consensus 171 atyGlnv~rvf~~ 183 (749)
T KOG0705|consen 171 ATYGLNVERVFQE 183 (749)
T ss_pred hhhhhhHHHHHHH
Confidence 9999999999986
|
|
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.12 Score=41.09 Aligned_cols=64 Identities=19% Similarity=0.310 Sum_probs=41.7
Q ss_pred cceeeeecCCccc----cchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEee
Q psy6623 102 LNFKLFDVGGQRS----ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLN 177 (262)
Q Consensus 102 ~~~~i~D~~Gq~~----~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~N 177 (262)
..+.+.|++|-.. ....+..|.+.++++|||++.+. .-.-.+ ...+...... ....+++|.|
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~----------~~~~~~-~~~l~~~~~~---~~~~~i~V~n 166 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQ----------DLTESD-MEFLKQMLDP---DKSRTIFVLN 166 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTS----------TGGGHH-HHHHHHHHTT---TCSSEEEEEE
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCc----------ccchHH-HHHHHHHhcC---CCCeEEEEEc
Confidence 5688999999733 34678889999999999999876 122222 3334444432 2233888889
Q ss_pred CC
Q psy6623 178 KK 179 (262)
Q Consensus 178 K~ 179 (262)
|.
T Consensus 167 k~ 168 (168)
T PF00350_consen 167 KA 168 (168)
T ss_dssp -G
T ss_pred CC
Confidence 84
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >KOG0464|consensus | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.042 Score=50.39 Aligned_cols=80 Identities=19% Similarity=0.260 Sum_probs=60.5
Q ss_pred ccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCC
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFT 168 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~ 168 (262)
|+.-.-..|.+++..+++.||.|+-.||---..|.+-.+|++.|+|.|. .--...+..|+..-. -
T Consensus 89 tiqsaav~fdwkg~rinlidtpghvdf~leverclrvldgavav~dasa-----------gve~qtltvwrqadk----~ 153 (753)
T KOG0464|consen 89 TIQSAAVNFDWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASA-----------GVEAQTLTVWRQADK----F 153 (753)
T ss_pred eeeeeeeecccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccC-----------Ccccceeeeehhccc----c
Confidence 3333345677899999999999999999989999999999999999986 222333444544322 3
Q ss_pred CCeEEEEeeCCchhh
Q psy6623 169 DTSIILFLNKKDLFE 183 (262)
Q Consensus 169 ~~piil~~NK~Dl~~ 183 (262)
+.|-+.|.||+|...
T Consensus 154 ~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 154 KIPAHCFINKMDKLA 168 (753)
T ss_pred CCchhhhhhhhhhhh
Confidence 688999999999765
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.091 Score=47.37 Aligned_cols=101 Identities=12% Similarity=0.062 Sum_probs=57.6
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+..+.|.||+|-..... ....-+|.+++|++... ...+...+. .++. ..-++|.||.
T Consensus 147 ~g~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~----------gd~iq~~k~---gi~E------~aDIiVVNKa 204 (332)
T PRK09435 147 AGYDVILVETVGVGQSET---AVAGMVDFFLLLQLPGA----------GDELQGIKK---GIME------LADLIVINKA 204 (332)
T ss_pred cCCCEEEEECCCCccchh---HHHHhCCEEEEEecCCc----------hHHHHHHHh---hhhh------hhheEEeehh
Confidence 467889999999763322 24567999999875222 233332221 1221 1227899999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-------ccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-------FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-------~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+....-... . ...+...+.- ....++.+||++|+||.++++.
T Consensus 205 Dl~~~~~a~~-~--------------~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~ 254 (332)
T PRK09435 205 DGDNKTAARR-A--------------AAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQA 254 (332)
T ss_pred cccchhHHHH-H--------------HHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHH
Confidence 9864210000 0 1122222211 1124778999999999999974
|
|
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.25 Score=42.51 Aligned_cols=68 Identities=19% Similarity=0.205 Sum_probs=43.3
Q ss_pred cceeeeecCCccc-------------cchhhhccccCC-CEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 102 LNFKLFDVGGQRS-------------ERKKWIHCFEDV-TAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 102 ~~~~i~D~~Gq~~-------------~r~~w~~~f~~~-~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
..|.+.|++|-.. .+.+-..|.++. +.|++|+|... .-.-.+++++.+.+- .
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~----------d~~~~d~l~ia~~ld----~ 190 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANV----------DLANSDALKLAKEVD----P 190 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCC----------CCCchhHHHHHHHHH----H
Confidence 6799999999742 122445577754 57888888653 111123344444332 1
Q ss_pred CCCeEEEEeeCCchhh
Q psy6623 168 TDTSIILFLNKKDLFE 183 (262)
Q Consensus 168 ~~~piil~~NK~Dl~~ 183 (262)
...++++|+||.|...
T Consensus 191 ~~~rti~ViTK~D~~~ 206 (240)
T smart00053 191 QGERTIGVITKLDLMD 206 (240)
T ss_pred cCCcEEEEEECCCCCC
Confidence 3689999999999865
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >KOG0461|consensus | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.15 Score=45.90 Aligned_cols=116 Identities=20% Similarity=0.308 Sum_probs=60.8
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
...+.+.|+.|+.+.-+-...--.=.|..|+|+|+..=- .....|.+-+=+-.| .-.+|+.||+|
T Consensus 69 ~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~--------QtQtAEcLiig~~~c-------~klvvvinkid 133 (522)
T KOG0461|consen 69 QLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGK--------QTQTAECLIIGELLC-------KKLVVVINKID 133 (522)
T ss_pred cceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhccc--------ccccchhhhhhhhhc-------cceEEEEeccc
Confidence 367899999998654332222222245668899987621 123334433333332 23577788888
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh----ccceeeccccccc----ceeeeeehhhHHHhhc
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL----FDSICNNKWFTDT----SIILFLNKKDLFEEKI 244 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~----~~~~~~~tsA~d~----~~I~~~f~~~lL~~~i 244 (262)
+..|.-..+.+.+. .+-+++.... ....+.++||++| +.|.++- ..|+..+
T Consensus 134 ~lpE~qr~ski~k~-----------~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~--e~l~s~i 192 (522)
T KOG0461|consen 134 VLPENQRASKIEKS-----------AKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELK--EALESRI 192 (522)
T ss_pred cccchhhhhHHHHH-----------HHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHH--HHHHHhh
Confidence 87652222222110 1222222222 2366788999999 5555554 3344444
|
|
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.3 Score=40.94 Aligned_cols=84 Identities=15% Similarity=0.258 Sum_probs=51.8
Q ss_pred ccceeEEEEeeeccceeeeecCCcccc-------chhh----hccccCCCEEEEeeeccccccccccCcccccHHHHHHH
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRSE-------RKKW----IHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKL 157 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~~-------r~~w----~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~ 157 (262)
|.........+++..+.++||+|--.- .... ..+..+.+++|+|+.+..+ ...-...+++
T Consensus 36 t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~---------t~~~~~~l~~ 106 (212)
T PF04548_consen 36 TQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRF---------TEEDREVLEL 106 (212)
T ss_dssp -SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB----------SHHHHHHHHH
T ss_pred ccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcc---------hHHHHHHHHH
Confidence 444555566778899999999994211 1111 1245689999999998865 3455677788
Q ss_pred HHHHHhCCCCCCCeEEEEeeCCchhh
Q psy6623 158 FDSICNNKWFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 158 ~~~i~~~~~~~~~piil~~NK~Dl~~ 183 (262)
+..++...... .++|+++..|.+.
T Consensus 107 l~~~FG~~~~k--~~ivvfT~~d~~~ 130 (212)
T PF04548_consen 107 LQEIFGEEIWK--HTIVVFTHADELE 130 (212)
T ss_dssp HHHHHCGGGGG--GEEEEEEEGGGGT
T ss_pred HHHHccHHHHh--HhhHHhhhccccc
Confidence 88888654433 4677778777654
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.12 Score=45.81 Aligned_cols=104 Identities=8% Similarity=-0.066 Sum_probs=54.6
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+..+-|.||+|-.. ......+.++.++++..... . .+.......+ .+.|.++++||+
T Consensus 125 ~g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~----------~---~el~~~~~~l------~~~~~ivv~NK~ 182 (300)
T TIGR00750 125 AGYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGT----------G---DDLQGIKAGL------MEIADIYVVNKA 182 (300)
T ss_pred CCCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCc----------c---HHHHHHHHHH------hhhccEEEEEcc
Confidence 467889999998431 11234556777776643221 1 2211111222 356779999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh--ccc--eeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL--FDS--ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~--~~~--~~~~tsA~d~~~I~~~f~~ 237 (262)
|+....-.. ..... ...-...+.. ..| .++.+||++++||.++++.
T Consensus 183 Dl~~~~~~~-~~~~~-----------~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~ 232 (300)
T TIGR00750 183 DGEGATNVT-IARLM-----------LALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDA 232 (300)
T ss_pred cccchhHHH-HHHHH-----------HHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHH
Confidence 987431000 00000 0000011111 122 3688999999999999964
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.14 Score=45.12 Aligned_cols=82 Identities=21% Similarity=0.305 Sum_probs=51.9
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
--|+......++..+-.+...|+.|+..|-+.-..--...|+.|+|++.+| --+....+.. ++ ..
T Consensus 60 GITIntahveyet~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~d-----------GpmPqTrEHi--Ll-ar- 124 (394)
T COG0050 60 GITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATD-----------GPMPQTREHI--LL-AR- 124 (394)
T ss_pred CceeccceeEEecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCC-----------CCCCcchhhh--hh-hh-
Confidence 334433344445567788899999998887666655567899999999987 1122222211 11 11
Q ss_pred CCCC-eEEEEeeCCchhh
Q psy6623 167 FTDT-SIILFLNKKDLFE 183 (262)
Q Consensus 167 ~~~~-piil~~NK~Dl~~ 183 (262)
.-.+ -|++|+||+|+.+
T Consensus 125 qvGvp~ivvflnK~Dmvd 142 (394)
T COG0050 125 QVGVPYIVVFLNKVDMVD 142 (394)
T ss_pred hcCCcEEEEEEecccccC
Confidence 1244 5778889999975
|
|
| >KOG3905|consensus | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.99 Score=40.49 Aligned_cols=59 Identities=19% Similarity=0.220 Sum_probs=37.1
Q ss_pred CCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh----ccceeecccccccceeeeeehh
Q psy6623 169 DTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL----FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 169 ~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~----~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
++|++||.+|+|...- +... -+|.... .+||....+. ..-..++||++.+.||+.+.+.
T Consensus 222 Gi~vlVV~TK~D~~s~-leke------~eyrDeh---fdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKY 284 (473)
T KOG3905|consen 222 GIPVLVVCTKCDAVSV-LEKE------HEYRDEH---FDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKY 284 (473)
T ss_pred CCcEEEEEeccchhhH-hhhc------chhhHHH---HHHHHHHHHHHHHHcCceeEEeecccccchHHHHHH
Confidence 5799999999998431 1111 0121111 5566554433 5566788999999999877753
|
|
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=91.73 E-value=0.72 Score=41.19 Aligned_cols=75 Identities=5% Similarity=0.200 Sum_probs=44.4
Q ss_pred eeeccceeeeecCCccccchhh-------hccc--cCCCEEEEeeeccccccccccCcccccH-HHHHHHHHHHHhCCCC
Q psy6623 98 SFKNLNFKLFDVGGQRSERKKW-------IHCF--EDVTAIIFCVAMSEYDQVLHEDETTNRM-QESLKLFDSICNNKWF 167 (262)
Q Consensus 98 ~~~~~~~~i~D~~Gq~~~r~~w-------~~~f--~~~~~iIfv~dls~~d~~~~e~~~~~~l-~e~~~~~~~i~~~~~~ 167 (262)
..++.+++++||+|........ ..|. .+.+++|||..+.... .... ...++.+..++.....
T Consensus 82 ~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R--------~~~~DkqlLk~Iqe~FG~~iw 153 (313)
T TIGR00991 82 TRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYR--------VDTLDGQVIRAITDSFGKDIW 153 (313)
T ss_pred EECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCccc--------CCHHHHHHHHHHHHHhhhhhh
Confidence 3578899999999976432111 1111 2689999997665310 1111 3345555555533222
Q ss_pred CCCeEEEEeeCCchh
Q psy6623 168 TDTSIILFLNKKDLF 182 (262)
Q Consensus 168 ~~~piil~~NK~Dl~ 182 (262)
.+++|++++.|..
T Consensus 154 --~~~IVVfTh~d~~ 166 (313)
T TIGR00991 154 --RKSLVVLTHAQFS 166 (313)
T ss_pred --ccEEEEEECCccC
Confidence 3689999999964
|
|
| >KOG3887|consensus | Back alignment and domain information |
|---|
Probab=91.67 E-value=0.49 Score=40.67 Aligned_cols=71 Identities=23% Similarity=0.376 Sum_probs=50.8
Q ss_pred cceeeeecCCccccch---hhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC--CCCCCCeEEEEe
Q psy6623 102 LNFKLFDVGGQRSERK---KWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN--KWFTDTSIILFL 176 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~---~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~--~~~~~~piil~~ 176 (262)
+.|++||.+||-.+-. -....|+++-++|||+|.-+ .+.+++..+...+.. +...++.+=|+.
T Consensus 75 inf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQd------------dy~eala~L~~~v~raykvNp~in~EVfi 142 (347)
T KOG3887|consen 75 INFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQD------------DYMEALARLHMTVERAYKVNPNINFEVFI 142 (347)
T ss_pred cceEEeecCCccccCCCccCHHHHHhccCeEEEEEechH------------HHHHHHHHHHHHhhheeecCCCceEEEEE
Confidence 6789999999976422 22446899999999999864 455666555555432 234577888999
Q ss_pred eCCchhhh
Q psy6623 177 NKKDLFEE 184 (262)
Q Consensus 177 NK~Dl~~~ 184 (262)
.|.|-+.+
T Consensus 143 HKvDGLsd 150 (347)
T KOG3887|consen 143 HKVDGLSD 150 (347)
T ss_pred EeccCCch
Confidence 99998654
|
|
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.00 E-value=0.38 Score=42.97 Aligned_cols=114 Identities=17% Similarity=0.133 Sum_probs=66.0
Q ss_pred ceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchh
Q psy6623 103 NFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182 (262)
Q Consensus 103 ~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~ 182 (262)
.+.+.|..|++-.-.--.+--.=.||+|+|++..+ .++. ....|-+..++ ++ .-..++++-||.||-
T Consensus 87 ~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANE---pcPQ----PQT~EHl~Ale-Ii-----gik~iiIvQNKIDlV 153 (415)
T COG5257 87 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANE---PCPQ----PQTREHLMALE-II-----GIKNIIIVQNKIDLV 153 (415)
T ss_pred EEEEeeCCchHHHHHHHhcchhhhcceEEEEecCC---CCCC----CchHHHHHHHh-hh-----ccceEEEEeccccee
Confidence 46789999998654433332233689999999775 2222 22233333322 22 235689999999997
Q ss_pred hhhhccCCCcccCCCCCCCCcch--hHHHHHHhhhccceeecccccccceeeeeehhhHHHhhcc
Q psy6623 183 EEKIKKSPLTICFPEYAGKRPGE--RNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK 245 (262)
Q Consensus 183 ~~kl~~~~l~~~fp~~~g~~~~~--~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~ 245 (262)
.+.-. ++. ++ .+|++.... -.-.+..+||..+.||+.++++ +++.+.
T Consensus 154 ~~E~A---lE~----------y~qIk~FvkGt~A-e~aPIIPiSA~~~~NIDal~e~--i~~~Ip 202 (415)
T COG5257 154 SRERA---LEN----------YEQIKEFVKGTVA-ENAPIIPISAQHKANIDALIEA--IEKYIP 202 (415)
T ss_pred cHHHH---HHH----------HHHHHHHhccccc-CCCceeeehhhhccCHHHHHHH--HHHhCC
Confidence 53211 111 11 333332221 2345678999999999999954 555554
|
|
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=90.20 E-value=1.2 Score=38.38 Aligned_cols=83 Identities=10% Similarity=0.151 Sum_probs=46.9
Q ss_pred ceeEEEEeeeccceeeeecCCccccc--hhh--------hcccc--CCCEEEEeeeccccccccccCcccccHHHHHHHH
Q psy6623 91 GIVEVHFSFKNLNFKLFDVGGQRSER--KKW--------IHCFE--DVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLF 158 (262)
Q Consensus 91 Gi~~~~~~~~~~~~~i~D~~Gq~~~r--~~w--------~~~f~--~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~ 158 (262)
.........++.++++|||+|-.... ... ..|.. +.++++||..++.... ...-...++.+
T Consensus 68 ~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~-------~~~d~~llk~I 140 (249)
T cd01853 68 RVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRR-------DYLDLPLLRAI 140 (249)
T ss_pred EEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCC-------CHHHHHHHHHH
Confidence 33444445677889999999975441 101 12332 5788888876654110 01112344455
Q ss_pred HHHHhCCCCCCCeEEEEeeCCchh
Q psy6623 159 DSICNNKWFTDTSIILFLNKKDLF 182 (262)
Q Consensus 159 ~~i~~~~~~~~~piil~~NK~Dl~ 182 (262)
...+..... .+++|++||+|..
T Consensus 141 ~e~fG~~i~--~~~ivV~T~~d~~ 162 (249)
T cd01853 141 TDSFGPSIW--RNAIVVLTHAASS 162 (249)
T ss_pred HHHhChhhH--hCEEEEEeCCccC
Confidence 554432221 4689999999974
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.13 E-value=0.73 Score=40.82 Aligned_cols=83 Identities=14% Similarity=0.107 Sum_probs=46.8
Q ss_pred cCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCc
Q psy6623 124 EDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRP 203 (262)
Q Consensus 124 ~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~ 203 (262)
.+++-+|+|+++.+- +.+.+.+...+- ++. ..++.-+|++||+||..+.-..
T Consensus 78 ~n~d~~iiIvs~~~P------~~~~~~ldR~Lv----~ae---~~gi~pvIvlnK~DL~~~~~~~--------------- 129 (301)
T COG1162 78 ANNDQAIIVVSLVDP------DFNTNLLDRYLV----LAE---AGGIEPVIVLNKIDLLDDEEAA--------------- 129 (301)
T ss_pred cccceEEEEEeccCC------CCCHHHHHHHHH----HHH---HcCCcEEEEEEccccCcchHHH---------------
Confidence 346667777777761 112233333332 222 2456667779999997531100
Q ss_pred chhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 204 GERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 204 ~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
.+-....+.+-.+....+||++++++.++..
T Consensus 130 --~~~~~~~y~~~gy~v~~~s~~~~~~~~~l~~ 160 (301)
T COG1162 130 --VKELLREYEDIGYPVLFVSAKNGDGLEELAE 160 (301)
T ss_pred --HHHHHHHHHhCCeeEEEecCcCcccHHHHHH
Confidence 0112222333556778899999998887774
|
|
| >KOG0465|consensus | Back alignment and domain information |
|---|
Probab=89.88 E-value=0.66 Score=44.71 Aligned_cols=75 Identities=11% Similarity=0.213 Sum_probs=51.7
Q ss_pred EEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEE
Q psy6623 94 EVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSII 173 (262)
Q Consensus 94 ~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pii 173 (262)
-..+.+++.++++.||+|+-.|----..-.+-.+|.|.|++... --...+...|+.+.. .++|.+
T Consensus 96 At~~~w~~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~-----------GVqsQt~tV~rQ~~r----y~vP~i 160 (721)
T KOG0465|consen 96 ATYFTWRDYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVA-----------GVESQTETVWRQMKR----YNVPRI 160 (721)
T ss_pred eeeeeeccceeEEecCCCceeEEEEehhhhhhccCeEEEEEccc-----------ceehhhHHHHHHHHh----cCCCeE
Confidence 34566788999999999996653333334556777777777654 333445566666653 379999
Q ss_pred EEeeCCchhh
Q psy6623 174 LFLNKKDLFE 183 (262)
Q Consensus 174 l~~NK~Dl~~ 183 (262)
-|.||+|...
T Consensus 161 ~FiNKmDRmG 170 (721)
T KOG0465|consen 161 CFINKMDRMG 170 (721)
T ss_pred EEEehhhhcC
Confidence 9999999743
|
|
| >KOG0467|consensus | Back alignment and domain information |
|---|
Probab=89.31 E-value=0.69 Score=45.63 Aligned_cols=85 Identities=19% Similarity=0.243 Sum_probs=58.0
Q ss_pred cccceeEEE----EeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh
Q psy6623 88 KTTGIVEVH----FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN 163 (262)
Q Consensus 88 pT~Gi~~~~----~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~ 163 (262)
.|.||.... ...++..+++.|++|+-.|.+--..--+=+|+.+..+|..+ ---......+++.
T Consensus 54 q~rgitmkss~is~~~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvve-----------gv~~qt~~vlrq~-- 120 (887)
T KOG0467|consen 54 QTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVE-----------GVCSQTYAVLRQA-- 120 (887)
T ss_pred hhhceeeeccccccccCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeecc-----------ccchhHHHHHHHH--
Confidence 456665433 22377889999999999988877777778999999999875 1112233333333
Q ss_pred CCCCCCCeEEEEeeCCchhhhhhc
Q psy6623 164 NKWFTDTSIILFLNKKDLFEEKIK 187 (262)
Q Consensus 164 ~~~~~~~piil~~NK~Dl~~~kl~ 187 (262)
|..+...+|+.||+|.+.-+++
T Consensus 121 --~~~~~~~~lvinkidrl~~el~ 142 (887)
T KOG0467|consen 121 --WIEGLKPILVINKIDRLITELK 142 (887)
T ss_pred --HHccCceEEEEehhhhHHHHHh
Confidence 3345667889999996554443
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=88.84 E-value=0.45 Score=38.70 Aligned_cols=15 Identities=40% Similarity=0.658 Sum_probs=13.2
Q ss_pred CCeEEEEeeCCchhh
Q psy6623 169 DTSIILFLNKKDLFE 183 (262)
Q Consensus 169 ~~piil~~NK~Dl~~ 183 (262)
+.|+++++||+|+..
T Consensus 30 ~kp~IlVlNK~DL~~ 44 (172)
T cd04178 30 NKKLVLVLNKIDLVP 44 (172)
T ss_pred CCCEEEEEehhhcCC
Confidence 589999999999964
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=88.60 E-value=2.9 Score=39.61 Aligned_cols=53 Identities=11% Similarity=0.174 Sum_probs=33.9
Q ss_pred ecccceeEEEEeeec------cceeeeecCCccccchhhhccccC----CCEEEEeeeccccc
Q psy6623 87 VKTTGIVEVHFSFKN------LNFKLFDVGGQRSERKKWIHCFED----VTAIIFCVAMSEYD 139 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~------~~~~i~D~~Gq~~~r~~w~~~f~~----~~~iIfv~dls~~d 139 (262)
.++.|.....+.+.+ ..+.+|-++|-..+..+-..-... -..||+|+|+|.-.
T Consensus 52 ~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~vvIvlDlS~PW 114 (472)
T PF05783_consen 52 KKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNTLVVIVLDLSKPW 114 (472)
T ss_pred CCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccceEEEEEecCCChH
Confidence 355666555555521 468999999876666655443321 24778899999844
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >KOG0085|consensus | Back alignment and domain information |
|---|
Probab=87.85 E-value=0.25 Score=42.12 Aligned_cols=35 Identities=60% Similarity=0.897 Sum_probs=31.2
Q ss_pred cccceeeeeehhhHHHhhccCCCccccCCCCCCCC
Q psy6623 226 TDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGPW 260 (262)
Q Consensus 226 ~d~~~I~~~f~~~lL~~~i~~~~l~~~~~~~~~~~ 260 (262)
++..-|..+.+.++|+.++.-+|+.++||+++||-
T Consensus 265 ~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~ 299 (359)
T KOG0085|consen 265 QNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPK 299 (359)
T ss_pred cCCceEEEechhhhhhhhhhHHHHHHhCcccCCCc
Confidence 44567888999999999999999999999999984
|
|
| >KOG0459|consensus | Back alignment and domain information |
|---|
Probab=87.72 E-value=0.49 Score=43.47 Aligned_cols=136 Identities=12% Similarity=0.069 Sum_probs=75.1
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
.-.|+++-...|+-..-.+++.|..|+..|-.-...-...++..++|++.-- .+. ...++.--+.=+...-..
T Consensus 141 kgKtvEvGrA~FEte~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~-gef------etgFerGgQTREha~Lak 213 (501)
T KOG0459|consen 141 KGKTVEVGRAYFETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARK-GEF------ETGFEKGGQTREHAMLAK 213 (501)
T ss_pred ccceeeeeeEEEEecceeEEeeccCcccccchhhccccchhhhhhhhhhhhh-chh------hcccccccchhHHHHHHH
Confidence 4578888888888888899999999999987666655566777777776621 000 011111101111111112
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcch-hHHHHH-Hhhh-ccceeecccccccceeeeeeh
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGE-RNRMQE-SLKL-FDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~-~~~i~~-~f~~-~~~~~~~tsA~d~~~I~~~f~ 236 (262)
...-..+|++.||+|-+.-.-.. .. +-++. .. ..|++. .|.. ....+..+|+.+|.++..--.
T Consensus 214 t~gv~~lVv~vNKMddPtvnWs~---eR-y~E~~----~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 214 TAGVKHLIVLINKMDDPTVNWSN---ER-YEECK----EKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred hhccceEEEEEEeccCCccCcch---hh-HHHHH----HHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 22345789999999975411000 00 00000 00 233331 0111 456778899999999886653
|
|
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.50 E-value=0.9 Score=41.64 Aligned_cols=66 Identities=14% Similarity=0.133 Sum_probs=42.0
Q ss_pred ceeeeecCCccccchhhhc--cccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 103 NFKLFDVGGQRSERKKWIH--CFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 103 ~~~i~D~~Gq~~~r~~w~~--~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
-+.+.||+|++.+-+-... .=..++..++++...+ ... .-.++.+--++ ....|++++.+|+|
T Consensus 202 lVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAdd---------G~~--~~tkEHLgi~~----a~~lPviVvvTK~D 266 (527)
T COG5258 202 LVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADD---------GVT--KMTKEHLGIAL----AMELPVIVVVTKID 266 (527)
T ss_pred EEEEEecCCccHHHHHHHHHHhccccceEEEEEEccC---------Ccc--hhhhHhhhhhh----hhcCCEEEEEEecc
Confidence 4679999999987554433 2356888999988765 111 11222221111 13689999999999
Q ss_pred hhh
Q psy6623 181 LFE 183 (262)
Q Consensus 181 l~~ 183 (262)
+..
T Consensus 267 ~~~ 269 (527)
T COG5258 267 MVP 269 (527)
T ss_pred cCc
Confidence 853
|
|
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=85.82 E-value=0.84 Score=48.10 Aligned_cols=74 Identities=15% Similarity=0.332 Sum_probs=43.7
Q ss_pred eeeecCCcc--------ccchhhhccc---------cCCCEEEEeeeccccccccccCcc-cccH-HHHHHHHHHHHhCC
Q psy6623 105 KLFDVGGQR--------SERKKWIHCF---------EDVTAIIFCVAMSEYDQVLHEDET-TNRM-QESLKLFDSICNNK 165 (262)
Q Consensus 105 ~i~D~~Gq~--------~~r~~w~~~f---------~~~~~iIfv~dls~~d~~~~e~~~-~~~l-~e~~~~~~~i~~~~ 165 (262)
-++||+|.- ..+..|..+. +..+|||+++|+++.-. .++. .... ......+.++.+ .
T Consensus 164 vliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~---~~~~~~~~~a~~lR~rl~el~~-~ 239 (1169)
T TIGR03348 164 VLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLT---ADPAERKAHARAIRQRLQELRE-Q 239 (1169)
T ss_pred EEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhC---CCHHHHHHHHHHHHHHHHHHHH-H
Confidence 489999932 3455686654 45999999999997321 1110 0111 112222333332 2
Q ss_pred CCCCCeEEEEeeCCchh
Q psy6623 166 WFTDTSIILFLNKKDLF 182 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~ 182 (262)
.-...||.|+++|+|+.
T Consensus 240 lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 240 LGARFPVYLVLTKADLL 256 (1169)
T ss_pred hCCCCCEEEEEecchhh
Confidence 22479999999999985
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >KOG0460|consensus | Back alignment and domain information |
|---|
Probab=84.84 E-value=2.1 Score=38.67 Aligned_cols=76 Identities=20% Similarity=0.270 Sum_probs=49.8
Q ss_pred eEEEEee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCC
Q psy6623 93 VEVHFSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDT 170 (262)
Q Consensus 93 ~~~~~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~ 170 (262)
+...+.+ ..-.+.-.|+.|+..|-+.-+.--...++.|+|++.+| -.+.+..+.+--.-+ ..=.
T Consensus 106 n~aHveYeTa~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatD-----------G~MPQTrEHlLLArQ---VGV~ 171 (449)
T KOG0460|consen 106 NAAHVEYETAKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATD-----------GPMPQTREHLLLARQ---VGVK 171 (449)
T ss_pred eeeeeeeeccccccccCCCCchHHHHHHhhcCccccCceEEEEEcCC-----------CCCcchHHHHHHHHH---cCCc
Confidence 3444444 34567778999998887666655567899999999997 334444333322211 1224
Q ss_pred eEEEEeeCCchh
Q psy6623 171 SIILFLNKKDLF 182 (262)
Q Consensus 171 piil~~NK~Dl~ 182 (262)
.|++|.||.|+.
T Consensus 172 ~ivvfiNKvD~V 183 (449)
T KOG0460|consen 172 HIVVFINKVDLV 183 (449)
T ss_pred eEEEEEeccccc
Confidence 689999999987
|
|
| >cd03110 Fer4_NifH_child This protein family's function is unkown | Back alignment and domain information |
|---|
Probab=84.58 E-value=3.8 Score=32.94 Aligned_cols=66 Identities=11% Similarity=0.111 Sum_probs=44.2
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
++..+.+.|++|..... -...+..++.+|+++..+. .++......++.+-. .+.|+.+++||.
T Consensus 91 ~~~d~viiDtpp~~~~~--~~~~l~~aD~vliv~~~~~-----------~~~~~~~~~~~~l~~----~~~~~~vV~N~~ 153 (179)
T cd03110 91 EGAELIIIDGPPGIGCP--VIASLTGADAALLVTEPTP-----------SGLHDLERAVELVRH----FGIPVGVVINKY 153 (179)
T ss_pred cCCCEEEEECcCCCcHH--HHHHHHcCCEEEEEecCCc-----------ccHHHHHHHHHHHHH----cCCCEEEEEeCC
Confidence 45778899999764432 2345688999999998774 444555444443322 146788999999
Q ss_pred chh
Q psy6623 180 DLF 182 (262)
Q Consensus 180 Dl~ 182 (262)
|..
T Consensus 154 ~~~ 156 (179)
T cd03110 154 DLN 156 (179)
T ss_pred CCC
Confidence 864
|
It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion. |
| >KOG1143|consensus | Back alignment and domain information |
|---|
Probab=83.39 E-value=4 Score=37.41 Aligned_cols=116 Identities=17% Similarity=0.123 Sum_probs=63.1
Q ss_pred ceeeeecCCccccchhhhccccC--CCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 103 NFKLFDVGGQRSERKKWIHCFED--VTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 103 ~~~i~D~~Gq~~~r~~w~~~f~~--~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
-+++.|++|+.+|.+-..+-..+ .+...+|++... .......|-+-+... -++|++++.+|+|
T Consensus 250 lvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~--------Gi~~tTrEHLgl~~A-------L~iPfFvlvtK~D 314 (591)
T KOG1143|consen 250 LVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADR--------GITWTTREHLGLIAA-------LNIPFFVLVTKMD 314 (591)
T ss_pred eEEEeecccchhhheeeeeecccCCCceEEEEEEcCC--------CCccccHHHHHHHHH-------hCCCeEEEEEeec
Confidence 36899999999998877664433 456666665432 012233343333322 2699999999999
Q ss_pred hhhhhh-c--cCCCcccCCCCCCCCc--------ch-hHHHHHHhhhccceeecccccccceeeee
Q psy6623 181 LFEEKI-K--KSPLTICFPEYAGKRP--------GE-RNRMQESLKLFDSICNNKWFTDTSIILFL 234 (262)
Q Consensus 181 l~~~kl-~--~~~l~~~fp~~~g~~~--------~~-~~~i~~~f~~~~~~~~~tsA~d~~~I~~~ 234 (262)
+....- . ..+++..... .|... .+ .+.-.+.....-+.++..|..+|++.+-+
T Consensus 315 l~~~~~~~~tv~~l~nll~~-~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll 379 (591)
T KOG1143|consen 315 LVDRQGLKKTVKDLSNLLAK-AGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL 379 (591)
T ss_pred cccchhHHHHHHHHHHHHhh-cCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence 975311 0 1122221111 12111 11 22333333334456777888888887643
|
|
| >KOG1424|consensus | Back alignment and domain information |
|---|
Probab=83.27 E-value=2.1 Score=40.64 Aligned_cols=55 Identities=22% Similarity=0.269 Sum_probs=35.1
Q ss_pred chhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhh
Q psy6623 116 RKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 184 (262)
Q Consensus 116 r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~ 184 (262)
|.+|.. .+-+|.||-+||.-+ ..+.-+-.+-..+.+ .......+|+.||.||...
T Consensus 166 RQLWRV-lErSDivvqIVDARn-----------Pllfr~~dLe~Yvke--~d~~K~~~LLvNKaDLl~~ 220 (562)
T KOG1424|consen 166 RQLWRV-LERSDIVVQIVDARN-----------PLLFRSPDLEDYVKE--VDPSKANVLLVNKADLLPP 220 (562)
T ss_pred HHHHHH-HhhcceEEEEeecCC-----------ccccCChhHHHHHhc--cccccceEEEEehhhcCCH
Confidence 778875 478999999999876 222222222222221 1234667889999999764
|
|
| >PF14331 ImcF-related_N: ImcF-related N-terminal domain | Back alignment and domain information |
|---|
Probab=82.71 E-value=1.8 Score=37.70 Aligned_cols=54 Identities=11% Similarity=0.268 Sum_probs=32.1
Q ss_pred cCCCEEEEeeeccccccccccCccccc-HHHH----HHHHHHHHhCCCCCCCeEEEEeeCCchh
Q psy6623 124 EDVTAIIFCVAMSEYDQVLHEDETTNR-MQES----LKLFDSICNNKWFTDTSIILFLNKKDLF 182 (262)
Q Consensus 124 ~~~~~iIfv~dls~~d~~~~e~~~~~~-l~e~----~~~~~~i~~~~~~~~~piil~~NK~Dl~ 182 (262)
+..+|||+++|+.+.- ..+...+ +... ...++++.+ ..-...||.|+++|+|+.
T Consensus 24 ~PlnGvil~vs~~~Ll----~~~~~~r~l~~~a~~lR~rL~el~~-~lg~~~PVYvv~Tk~D~l 82 (266)
T PF14331_consen 24 QPLNGVILTVSVDDLL----NADEAERELEALARALRQRLEELQR-TLGVRLPVYVVFTKCDLL 82 (266)
T ss_pred CCCCEEEEEEEHHHHh----cCChhhhHHHHHHHHHHHHHHHHHH-HhCCCCCeEeeeECCCcc
Confidence 4589999999998732 2211122 2222 222333322 223479999999999984
|
|
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.26 E-value=1.9 Score=37.81 Aligned_cols=72 Identities=11% Similarity=0.288 Sum_probs=53.3
Q ss_pred eeccceeeeecCCccc-------cchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCe
Q psy6623 99 FKNLNFKLFDVGGQRS-------ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTS 171 (262)
Q Consensus 99 ~~~~~~~i~D~~Gq~~-------~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~p 171 (262)
+++-.+.+||++|-+. +|.+...+....+.|+.+.+..| ..+.-....++.+.-.. .+.+
T Consensus 84 ~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~d-----------raL~~d~~f~~dVi~~~--~~~~ 150 (296)
T COG3596 84 YDGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADD-----------RALGTDEDFLRDVIILG--LDKR 150 (296)
T ss_pred ccccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCC-----------ccccCCHHHHHHHHHhc--cCce
Confidence 3556789999999766 67778888889999999999887 33444455666666432 2478
Q ss_pred EEEEeeCCchhh
Q psy6623 172 IILFLNKKDLFE 183 (262)
Q Consensus 172 iil~~NK~Dl~~ 183 (262)
++++.|.+|...
T Consensus 151 ~i~~VtQ~D~a~ 162 (296)
T COG3596 151 VLFVVTQADRAE 162 (296)
T ss_pred eEEEEehhhhhc
Confidence 999999999754
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 262 | ||||
| 3c7k_A | 333 | Molecular Architecture Of Galphao And The Structura | 2e-97 | ||
| 2g83_A | 313 | Structure Of Activated G-alpha-i1 Bound To A Nucleo | 2e-82 | ||
| 2g83_A | 313 | Structure Of Activated G-alpha-i1 Bound To A Nucleo | 7e-25 | ||
| 2xns_A | 327 | Crystal Structure Of Human G Alpha I1 Bound To A De | 2e-82 | ||
| 2xns_A | 327 | Crystal Structure Of Human G Alpha I1 Bound To A De | 9e-25 | ||
| 4g5q_A | 330 | Structure Of Lgn Gl4GALPHAI1 COMPLEX Length = 330 | 2e-82 | ||
| 4g5q_A | 330 | Structure Of Lgn Gl4GALPHAI1 COMPLEX Length = 330 | 8e-25 | ||
| 3qi2_A | 328 | A Galpha P-Loop Mutation Prevents Transition To The | 2e-82 | ||
| 3qi2_A | 328 | A Galpha P-Loop Mutation Prevents Transition To The | 9e-25 | ||
| 1y3a_A | 329 | Structure Of G-Alpha-I1 Bound To A Gdp-Selective Pe | 2e-82 | ||
| 1y3a_A | 329 | Structure Of G-Alpha-I1 Bound To A Gdp-Selective Pe | 9e-25 | ||
| 3qe0_A | 325 | A Galpha-I1 P-Loop Mutation Prevents Transition To | 2e-82 | ||
| 3qe0_A | 325 | A Galpha-I1 P-Loop Mutation Prevents Transition To | 9e-25 | ||
| 2ik8_A | 324 | Crystal Structure Of The Heterodimeric Complex Of H | 2e-82 | ||
| 2ik8_A | 324 | Crystal Structure Of The Heterodimeric Complex Of H | 9e-25 | ||
| 2gtp_A | 323 | Crystal Structure Of The Heterodimeric Complex Of H | 2e-82 | ||
| 2gtp_A | 323 | Crystal Structure Of The Heterodimeric Complex Of H | 9e-25 | ||
| 1kjy_A | 325 | Crystal Structure Of Human G[alpha]i1 Bound To The | 2e-82 | ||
| 1kjy_A | 325 | Crystal Structure Of Human G[alpha]i1 Bound To The | 9e-25 | ||
| 1bh2_A | 315 | A326s Mutant Of An Inhibitory Alpha Subunit Length | 3e-82 | ||
| 1bh2_A | 315 | A326s Mutant Of An Inhibitory Alpha Subunit Length | 7e-25 | ||
| 3ffb_A | 360 | Crystal Structure Of A Fast Activating G Protein Mu | 3e-82 | ||
| 3ffb_A | 360 | Crystal Structure Of A Fast Activating G Protein Mu | 7e-25 | ||
| 1gp2_A | 353 | G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 Wi | 3e-82 | ||
| 1gp2_A | 353 | G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 Wi | 7e-25 | ||
| 2zjy_A | 356 | Structure Of The K349p Mutant Of Gi Alpha 1 Subunit | 4e-82 | ||
| 2zjy_A | 356 | Structure Of The K349p Mutant Of Gi Alpha 1 Subunit | 9e-25 | ||
| 1as0_A | 353 | Gtp-Gamma-S Bound G42v Gia1 Length = 353 | 4e-82 | ||
| 1as0_A | 353 | Gtp-Gamma-S Bound G42v Gia1 Length = 353 | 8e-25 | ||
| 3d7m_A | 354 | Crystal Structure Of The G Protein Fast-Exchange Do | 4e-82 | ||
| 3d7m_A | 354 | Crystal Structure Of The G Protein Fast-Exchange Do | 9e-25 | ||
| 3ums_A | 354 | Crystal Structure Of The G202a Mutant Of Human G-Al | 1e-81 | ||
| 3ums_A | 354 | Crystal Structure Of The G202a Mutant Of Human G-Al | 8e-25 | ||
| 1svk_A | 353 | Structure Of The K180p Mutant Of Gi Alpha Subunit B | 2e-81 | ||
| 1svk_A | 353 | Structure Of The K180p Mutant Of Gi Alpha Subunit B | 8e-25 | ||
| 1gg2_A | 353 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 2e-81 | ||
| 1gg2_A | 353 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 7e-25 | ||
| 3onw_A | 328 | Structure Of A G-Alpha-I1 Mutant With Enhanced Affi | 2e-81 | ||
| 3onw_A | 328 | Structure Of A G-Alpha-I1 Mutant With Enhanced Affi | 9e-25 | ||
| 1gil_A | 353 | Structure Of Active Conformations Of Gia1 And The M | 3e-81 | ||
| 1gil_A | 353 | Structure Of Active Conformations Of Gia1 And The M | 8e-25 | ||
| 3umr_A | 354 | Crystal Structure Of The G202d Mutant Of Human G-Al | 3e-80 | ||
| 3umr_A | 354 | Crystal Structure Of The G202d Mutant Of Human G-Al | 2e-23 | ||
| 2ode_A | 350 | Crystal Structure Of The Heterodimeric Complex Of H | 3e-80 | ||
| 2ode_A | 350 | Crystal Structure Of The Heterodimeric Complex Of H | 1e-23 | ||
| 2ihb_A | 323 | Crystal Structure Of The Heterodimeric Complex Of H | 6e-80 | ||
| 2ihb_A | 323 | Crystal Structure Of The Heterodimeric Complex Of H | 2e-23 | ||
| 4g5r_A | 330 | Structure Of Lgn Gl4GALPHAI3 COMPLEX Length = 330 | 6e-80 | ||
| 4g5r_A | 330 | Structure Of Lgn Gl4GALPHAI3 COMPLEX Length = 330 | 2e-23 | ||
| 4g5o_A | 330 | Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX Length | 5e-79 | ||
| 4g5o_A | 330 | Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX Length | 2e-23 | ||
| 1fqj_A | 325 | Crystal Structure Of The Heterotrimeric Complex Of | 8e-79 | ||
| 1fqj_A | 325 | Crystal Structure Of The Heterotrimeric Complex Of | 1e-24 | ||
| 3v00_C | 356 | Studies Of A Constitutively Active G-Alpha Subunit | 6e-78 | ||
| 3v00_C | 356 | Studies Of A Constitutively Active G-Alpha Subunit | 1e-23 | ||
| 1got_A | 350 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 1e-76 | ||
| 1got_A | 350 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 1e-23 | ||
| 1shz_A | 340 | Crystal Structure Of The P115rhogef Rgrgs Domain In | 5e-72 | ||
| 1shz_A | 340 | Crystal Structure Of The P115rhogef Rgrgs Domain In | 4e-24 | ||
| 1tnd_A | 324 | The 2.2 Angstroms Crystal Structure Of Transducin-A | 1e-68 | ||
| 1tnd_A | 324 | The 2.2 Angstroms Crystal Structure Of Transducin-A | 3e-18 | ||
| 3ohm_A | 327 | Crystal Structure Of Activated G Alpha Q Bound To I | 3e-58 | ||
| 3ah8_A | 355 | Structure Of Heterotrimeric G Protein Galpha-Q Beta | 4e-58 | ||
| 2bcj_Q | 353 | Crystal Structure Of G Protein-coupled Receptor Kin | 5e-58 | ||
| 4gnk_A | 353 | Crystal Structure Of Galphaq In Complex With Full-l | 6e-58 | ||
| 4ekc_A | 347 | Structure Of Human Regulator Of G Protein Signaling | 3e-56 | ||
| 1cjk_C | 402 | Complex Of Gs-Alpha With The Catalytic Domains Of M | 8e-51 | ||
| 3sn6_A | 380 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 8e-51 | ||
| 1cul_C | 380 | Complex Of Gs-Alpha With The Catalytic Domains Of M | 9e-51 | ||
| 1azs_C | 402 | Complex Of Gs-Alpha With The Catalytic Domains Of M | 9e-51 | ||
| 1cs4_C | 394 | Complex Of Gs-Alpha With The Catalytic Domains Of M | 9e-51 | ||
| 1zcb_A | 362 | Crystal Structure Of G Alpha 13 In Complex With Gdp | 3e-50 | ||
| 3cx7_A | 338 | Crystal Structure Of Pdzrhogef Rgrgs Domain In A Co | 4e-50 | ||
| 1zca_A | 359 | Crystal Structure Of G Alpha 12 In Complex With Gdp | 8e-50 | ||
| 3cx6_A | 338 | Crystal Structure Of Pdzrhogef Rgrgs Domain In A Co | 3e-49 | ||
| 2xtz_A | 354 | Crystal Structure Of The G Alpha Protein Atgpa1 Fro | 1e-44 | ||
| 4fid_A | 340 | Crystal Structure Of A Heterotrimeric G-Protein Sub | 1e-44 | ||
| 3lvr_E | 497 | The Crystal Structure Of Asap3 In Complex With Arf6 | 3e-07 | ||
| 3n5c_A | 162 | Crystal Structure Of Arf6delta13 Complexed With Gdp | 5e-07 | ||
| 4fme_C | 160 | Espg-Rab1-Arf6 Complex Length = 160 | 5e-07 | ||
| 1e0s_A | 174 | Small G Protein Arf6-Gdp Length = 174 | 5e-07 | ||
| 2a5d_A | 175 | Structural Basis For The Activation Of Cholera Toxi | 5e-07 | ||
| 3aq4_A | 184 | Molecular Insights Into Plant Cell Proliferation Di | 7e-07 | ||
| 3pcr_B | 162 | Structure Of Espg-Arf6 Complex Length = 162 | 7e-07 | ||
| 3o47_A | 329 | Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le | 3e-06 | ||
| 3rd1_A | 178 | Structure Of An Adp Ribosylation Factor From Entamo | 3e-06 | ||
| 3vhx_A | 172 | The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi | 3e-06 | ||
| 2w83_A | 165 | Crystal Structure Of The Arf6 Gtpase In Complex Wit | 4e-06 | ||
| 2a5g_A | 175 | Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length | 4e-06 | ||
| 1re0_A | 164 | Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe | 5e-06 | ||
| 1hur_A | 180 | Human Adp-Ribosylation Factor 1 Complexed With Gdp, | 6e-06 | ||
| 1rrg_A | 181 | Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com | 6e-06 | ||
| 3tjz_A | 164 | Crystal Structure Of Arf1 Bound To The GammaZETA-Co | 7e-06 | ||
| 2k5u_A | 181 | Solution Structure Of Myirstoylated Yeast Arf1 Prot | 8e-06 | ||
| 3lrp_A | 181 | Crystal Structure Of Plasmodium Falciparum Adp-Ribo | 1e-05 | ||
| 2ksq_A | 181 | The Myristoylated Yeast Arf1 In A Gtp And Bicelle B | 1e-05 | ||
| 1mr3_F | 181 | Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 | 2e-05 | ||
| 1z6x_A | 180 | Structure Of Human Adp-Ribosylation Factor 4 Length | 2e-05 | ||
| 2b6h_A | 192 | Structure Of Human Adp-Ribosylation Factor 5 Length | 3e-05 | ||
| 1moz_A | 183 | Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo | 3e-05 | ||
| 1j2j_A | 166 | Crystal Structure Of Gga1 Gat N-terminal Region In | 4e-05 | ||
| 1ksh_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati | 3e-04 | ||
| 1r4a_A | 165 | Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac | 6e-04 | ||
| 1ksg_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt | 6e-04 |
| >pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis For Rgs16-Mediated Deactivation Length = 333 | Back alignment and structure |
|
| >pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide- State-selective Peptide: Minimal Determinants For Recognizing The Active Form Of A G Protein Alpha Subunit Length = 313 | Back alignment and structure |
|
| >pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide- State-selective Peptide: Minimal Determinants For Recognizing The Active Form Of A G Protein Alpha Subunit Length = 313 | Back alignment and structure |
|
| >pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed Helical Peptide Derived From The Goloco Motif Of Rgs14 Length = 327 | Back alignment and structure |
|
| >pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed Helical Peptide Derived From The Goloco Motif Of Rgs14 Length = 327 | Back alignment and structure |
|
| >pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX Length = 330 | Back alignment and structure |
|
| >pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX Length = 330 | Back alignment and structure |
|
| >pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The Activated State: G42r Bound To Rgs14 Goloco Length = 328 | Back alignment and structure |
|
| >pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The Activated State: G42r Bound To Rgs14 Goloco Length = 328 | Back alignment and structure |
|
| >pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide Provides Insight Into Guanine Nucleotide Exchange Length = 329 | Back alignment and structure |
|
| >pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide Provides Insight Into Guanine Nucleotide Exchange Length = 329 | Back alignment and structure |
|
| >pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The Activated State Length = 325 | Back alignment and structure |
|
| >pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The Activated State Length = 325 | Back alignment and structure |
|
| >pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs16 And Activated Gi Alpha 1 Length = 324 | Back alignment and structure |
|
| >pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs16 And Activated Gi Alpha 1 Length = 324 | Back alignment and structure |
|
| >pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs1 And Activated Gi Alpha 1 Length = 323 | Back alignment and structure |
|
| >pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs1 And Activated Gi Alpha 1 Length = 323 | Back alignment and structure |
|
| >pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco Motif Of Rgs14 Length = 325 | Back alignment and structure |
|
| >pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco Motif Of Rgs14 Length = 325 | Back alignment and structure |
|
| >pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit Length = 315 | Back alignment and structure |
|
| >pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit Length = 315 | Back alignment and structure |
|
| >pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp Bound Length = 353 | Back alignment and structure |
|
| >pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp Bound Length = 353 | Back alignment and structure |
|
| >pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound To Alf4 And Gdp Length = 356 | Back alignment and structure |
|
| >pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound To Alf4 And Gdp Length = 356 | Back alignment and structure |
|
| >pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1 Length = 353 | Back alignment and structure |
|
| >pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1 Length = 353 | Back alignment and structure |
|
| >pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double Mutant I56cQ333C Length = 354 | Back alignment and structure |
|
| >pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double Mutant I56cQ333C Length = 354 | Back alignment and structure |
|
| >pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1 Length = 354 | Back alignment and structure |
|
| >pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1 Length = 354 | Back alignment and structure |
|
| >pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To Alf4 And Gdp Length = 353 | Back alignment and structure |
|
| >pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To Alf4 And Gdp Length = 353 | Back alignment and structure |
|
| >pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 353 | Back alignment and structure |
|
| >pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 353 | Back alignment and structure |
|
| >pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity For The Rgs14 Goloco Motif. Length = 328 | Back alignment and structure |
|
| >pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity For The Rgs14 Goloco Motif. Length = 328 | Back alignment and structure |
|
| >pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The Mechanism Of Gtp Hydrolysis Length = 353 | Back alignment and structure |
|
| >pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The Mechanism Of Gtp Hydrolysis Length = 353 | Back alignment and structure |
|
| >pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1 Length = 354 | Back alignment and structure |
|
| >pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1 Length = 354 | Back alignment and structure |
|
| >pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs8 And Activated Gi Alpha 3 Length = 350 | Back alignment and structure |
|
| >pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs8 And Activated Gi Alpha 3 Length = 350 | Back alignment and structure |
|
| >pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs10 And Activated Gi Alpha 3 Length = 323 | Back alignment and structure |
|
| >pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs10 And Activated Gi Alpha 3 Length = 323 | Back alignment and structure |
|
| >pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX Length = 330 | Back alignment and structure |
|
| >pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX Length = 330 | Back alignment and structure |
|
| >pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX Length = 330 | Back alignment and structure |
|
| >pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX Length = 330 | Back alignment and structure |
|
| >pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)- (GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)] Length = 325 | Back alignment and structure |
|
| >pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)- (GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)] Length = 325 | Back alignment and structure |
|
| >pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide Insights Into The Mechanism Of G Protein Activation. Length = 356 | Back alignment and structure |
|
| >pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide Insights Into The Mechanism Of G Protein Activation. Length = 356 | Back alignment and structure |
|
| >pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 350 | Back alignment and structure |
|
| >pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 350 | Back alignment and structure |
|
| >pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A Complex With Galpha(13):galpha(i1) Chimera Length = 340 | Back alignment and structure |
|
| >pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A Complex With Galpha(13):galpha(i1) Chimera Length = 340 | Back alignment and structure |
|
| >pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha Complexed With Gtp Gamma S Length = 324 | Back alignment and structure |
|
| >pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha Complexed With Gtp Gamma S Length = 324 | Back alignment and structure |
|
| >pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its Effector Phospholipase C Beta 3 Length = 327 | Back alignment and structure |
|
| >pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma In Complex With An Inhibitor Ym-254890 Length = 355 | Back alignment and structure |
|
| >pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 353 | Back alignment and structure |
|
| >pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length Human Plcbeta3 Length = 353 | Back alignment and structure |
|
| >pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2 (rgs2) In Complex With Murine Galpha-q(r183c) Length = 347 | Back alignment and structure |
|
| >pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With Adenosine 5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn Length = 402 | Back alignment and structure |
|
| >pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 380 | Back alignment and structure |
|
| >pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With 2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg Length = 380 | Back alignment and structure |
|
| >pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase Length = 402 | Back alignment and structure |
|
| >pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With 2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And Mg Length = 394 | Back alignment and structure |
|
| >pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp Length = 362 | Back alignment and structure |
|
| >pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex With Galpha-13 Bound To Gdp-Alf4 Length = 338 | Back alignment and structure |
|
| >pdb|1ZCA|A Chain A, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+ And Alf4- Length = 359 | Back alignment and structure |
|
| >pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex With Galpha-13 Bound To Gdp Length = 338 | Back alignment and structure |
|
| >pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From Arabidopsis Thaliana Length = 354 | Back alignment and structure |
|
| >pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit From Entamoeba Histolytica, Ehg-Alpha-1 Length = 340 | Back alignment and structure |
|
| >pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497 | Back alignment and structure |
|
| >pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160 | Back alignment and structure |
|
| >pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174 | Back alignment and structure |
|
| >pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175 | Back alignment and structure |
|
| >pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184 | Back alignment and structure |
|
| >pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162 | Back alignment and structure |
|
| >pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 | Back alignment and structure |
|
| >pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178 | Back alignment and structure |
|
| >pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172 | Back alignment and structure |
|
| >pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165 | Back alignment and structure |
|
| >pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175 | Back alignment and structure |
|
| >pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164 | Back alignment and structure |
|
| >pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180 | Back alignment and structure |
|
| >pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181 | Back alignment and structure |
|
| >pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164 | Back alignment and structure |
|
| >pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181 | Back alignment and structure |
|
| >pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181 | Back alignment and structure |
|
| >pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181 | Back alignment and structure |
|
| >pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181 | Back alignment and structure |
|
| >pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180 | Back alignment and structure |
|
| >pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192 | Back alignment and structure |
|
| >pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183 | Back alignment and structure |
|
| >pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166 | Back alignment and structure |
|
| >pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186 | Back alignment and structure |
|
| >pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165 | Back alignment and structure |
|
| >pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... Length = 353 | Back alignment and structure |
|---|
Score = 251 bits (643), Expect = 5e-83
Identities = 137/192 (71%), Positives = 154/192 (80%)
Query: 7 DTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDD 66
D V+ + + EL +KRLW DSGVQ CF RS EYQLNDSA Y+L+D
Sbjct: 98 ARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLND 157
Query: 67 LDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDV 126
LDR+ Y PT+QD+LRTRVKTTGIVE HF+FK+L+FK+FDVGGQRSERKKWIHCFE V
Sbjct: 158 LDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGV 217
Query: 127 TAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 186
TAIIFCVA+S+YD VL EDE NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLFEEKI
Sbjct: 218 TAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 277
Query: 187 KKSPLTICFPEY 198
KKSPLTIC+PEY
Sbjct: 278 KKSPLTICYPEY 289
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* Length = 402 | Back alignment and structure |
|---|
Score = 250 bits (640), Expect = 5e-82
Identities = 97/200 (48%), Positives = 124/200 (62%), Gaps = 2/200 (1%)
Query: 13 MVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGA 72
+ + + F E K LW D GV+ C+ RSNEYQL D A+YFLD +D +
Sbjct: 128 VDYILSVMNVPDFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQ 187
Query: 73 KEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFC 132
+Y P++QD+LR RV T+GI E F +NF +FDVGGQR ER+KWI CF DVTAIIF
Sbjct: 188 DDYVPSDQDLLRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFV 247
Query: 133 VAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK--KSP 190
VA S Y+ V+ ED TNR+QE+L LF SI NN+W S+ILFLNK+DL EK+ KS
Sbjct: 248 VASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSK 307
Query: 191 LTICFPEYAGKRPGERNRMQ 210
+ FPE+A E +
Sbjct: 308 IEDYFPEFARYTTPEDATPE 327
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* Length = 327 | Back alignment and structure |
|---|
Score = 247 bits (631), Expect = 1e-81
Identities = 102/189 (53%), Positives = 130/189 (68%)
Query: 13 MVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGA 72
+E F + A+K LW D G+QEC+ R EYQL+DS KY+L+DLDR+
Sbjct: 78 AQLVREVDVEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVAD 137
Query: 73 KEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFC 132
Y PT+QD+LR RV TTGI+E F +++ F++ DVGGQRSER+KWIHCFE+VT+I+F
Sbjct: 138 PSYLPTQQDVLRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFL 197
Query: 133 VAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLT 192
VA+SEYDQVL E + NRM+ES LF +I WF ++S+ILFLNKKDL EEKI S L
Sbjct: 198 VALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLV 257
Query: 193 ICFPEYAGK 201
FPEY G
Sbjct: 258 DYFPEYDGP 266
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* Length = 362 | Back alignment and structure |
|---|
Score = 246 bits (628), Expect = 1e-80
Identities = 91/188 (48%), Positives = 124/188 (65%)
Query: 16 DVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEY 75
+ + + L A++ LW DSG+Q + R E+QL +S KYFLD+LD+LG +Y
Sbjct: 115 PMAAQGMVETRVFLQYLPAIRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDY 174
Query: 76 QPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAM 135
P++QDIL R T GI E F KN+ FK+ DVGGQRSERK+W CF+ VT+I+F V+
Sbjct: 175 IPSQQDILLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSS 234
Query: 136 SEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICF 195
SE+DQVL ED TNR+ ESL +F++I NN+ F++ SIILFLNK DL EEK++ + F
Sbjct: 235 SEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYF 294
Query: 196 PEYAGKRP 203
E+ G
Sbjct: 295 LEFEGDPH 302
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} Length = 354 | Back alignment and structure |
|---|
Score = 243 bits (621), Expect = 8e-80
Identities = 88/197 (44%), Positives = 122/197 (61%), Gaps = 8/197 (4%)
Query: 19 QRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPT 78
D ++++ ++ LW D +QE R NE Q+ D KY +++L RL Y PT
Sbjct: 94 GGRLDYPRLTKDIAEGIETLWKDPAIQETCARGNELQVPDCTKYLMENLKRLSDINYIPT 153
Query: 79 EQDILRTRVKTTGIVEVHFSFKNLN------FKLFDVGGQRSERKKWIHCFEDVTAIIFC 132
++D+L RV+TTG+VE+ FS N ++LFDVGGQR+ER+KWIH FE VTA+IFC
Sbjct: 154 KEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFC 213
Query: 133 VAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLT 192
A+SEYDQ L EDE NRM E+ +LFD + F TS +LFLNK D+FE+K+ PL
Sbjct: 214 AAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLN 273
Query: 193 IC--FPEYAGKRPGERN 207
+C F +Y G++
Sbjct: 274 VCEWFRDYQPVSSGKQE 290
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 4e-11
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 12/86 (13%)
Query: 97 FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDET-TNRMQESL 155
+ + F FD+GG R+ W + + I+F V D R+ ES
Sbjct: 64 LTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV-----------DCADHERLLESK 112
Query: 156 KLFDSICNNKWFTDTSIILFLNKKDL 181
+ DS+ ++ + I++ NK D
Sbjct: 113 EELDSLMTDETIANVPILILGNKIDR 138
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 6e-11
Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 12/86 (13%)
Query: 97 FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDET-TNRMQESL 155
+ N+ F FD+GG R+ W F +V I+F V D R E+
Sbjct: 62 LAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLV-----------DAADPERFDEAR 110
Query: 156 KLFDSICNNKWFTDTSIILFLNKKDL 181
D++ N D ++ NK D
Sbjct: 111 VELDALFNIAELKDVPFVILGNKIDA 136
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 2e-10
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 12/86 (13%)
Query: 97 FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDET-TNRMQESL 155
N F ++D+GGQ S R W + + +I V D T R+ +
Sbjct: 60 IVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVV-----------DSTDRERISVTR 108
Query: 156 KLFDSICNNKWFTDTSIILFLNKKDL 181
+ + ++ +++F NK+D+
Sbjct: 109 EELYKMLAHEDLRKAGLLIFANKQDV 134
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 4e-10
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Query: 97 FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDET-TNRMQESL 155
++KNL F+++D+GG S R W + + A+I+ V D +R+ S
Sbjct: 46 VTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVV-----------DSCDRDRIGISK 94
Query: 156 KLFDSICNNKWFTDTSIILFLNKKDL 181
++ + +++F NK+D+
Sbjct: 95 SELVAMLEEEELRKAILVVFANKQDM 120
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 4e-10
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 97 FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDET-TNRMQESL 155
+ ++DVGGQ+S R W + FE +I+ V D RMQ+
Sbjct: 57 LEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV-----------DSADRQRMQDCQ 105
Query: 156 KLFDSICNNKWFTDTSIILFLNKKDL 181
+ S+ + ++++F NK+DL
Sbjct: 106 RELQSLLVEERLAGATLLIFANKQDL 131
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 4e-10
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 97 FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLK 156
+KN++F+++D+GGQ R W F D A+I+ V D + RM +
Sbjct: 61 LQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVV-----DSTDRD-----RMGVAKH 110
Query: 157 LFDSICNNKWFTDTSIILFLNKKDL 181
++ + + +++F NK+DL
Sbjct: 111 ELYALLDEDELRKSLLLIFANKQDL 135
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 4e-10
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 12/86 (13%)
Query: 97 FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDET-TNRMQESL 155
N F ++D+GGQ S R W + + +I V D T R+ +
Sbjct: 55 IVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVV-----------DSTDRERISVTR 103
Query: 156 KLFDSICNNKWFTDTSIILFLNKKDL 181
+ + ++ +++F NK+D+
Sbjct: 104 EELYKMLAHEDLRKAGLLIFANKQDV 129
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 5e-10
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 97 FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLK 156
+ N+ KL+D+GGQ R W V+AI++ V D E +++ S
Sbjct: 62 ITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMV-----DAADQE-----KIEASKN 111
Query: 157 LFDSICNNKWFTDTSIILFLNKKDL 181
++ + +++ NK+DL
Sbjct: 112 ELHNLLDKPQLQGIPVLVLGNKRDL 136
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 6e-10
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Query: 97 FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDET-TNRMQESL 155
+KN++F ++DVGGQ R W H F++ +IF V D R+ E+
Sbjct: 39 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV-----------DSNDRERVNEAR 87
Query: 156 KLFDSICNNKWFTDTSIILFLNKKDL 181
+ + D +++F NK+DL
Sbjct: 88 EELMRMLAEDELRDAVLLVFANKQDL 113
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 7e-10
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 12/86 (13%)
Query: 97 FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDET-TNRMQESL 155
S+KNL ++D+GGQ S R W + D A+IF V D T +RM +
Sbjct: 57 LSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVV-----------DSTDKDRMSTAS 105
Query: 156 KLFDSICNNKWFTDTSIILFLNKKDL 181
K + + D ++++F NK+D
Sbjct: 106 KELHLMLQEEELQDAALLVFANKQDQ 131
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 8e-10
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 12/86 (13%)
Query: 97 FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDET-TNRMQESL 155
+ ++D+GGQR R W FE+ +I+ + D R +E+
Sbjct: 55 VQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVI-----------DSADRKRFEETG 103
Query: 156 KLFDSICNNKWFTDTSIILFLNKKDL 181
+ + + + +++F NK+DL
Sbjct: 104 QELTELLEEEKLSCVPVLIFANKQDL 129
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 2e-09
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 12/86 (13%)
Query: 97 FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDET-TNRMQESL 155
+KN+ F ++DVGGQ R W H F++ +IF V D R+QES
Sbjct: 68 VEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV-----------DSNDRERVQESA 116
Query: 156 KLFDSICNNKWFTDTSIILFLNKKDL 181
+ D +++F NK+D+
Sbjct: 117 DELQKMLQEDELRDAVLLVFANKQDM 142
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 4e-09
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Query: 97 FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDET-TNRMQESL 155
+KN++F ++DVGGQ R W H F++ +IF V D R+ E+
Sbjct: 204 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV-----------DSNDRERVNEAR 252
Query: 156 KLFDSICNNKWFTDTSIILFLNKKDL 181
+ + D +++F NK+DL
Sbjct: 253 EELMRMLAEDELRDAVLLVFANKQDL 278
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 7e-09
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 28/95 (29%)
Query: 97 FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCV----------AMSEYDQVLHEDE 146
F +L+F +FD+ GQ R W H +++ AIIF + A E D +L+ +
Sbjct: 62 FKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPD 121
Query: 147 TTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181
+R I+ F NK DL
Sbjct: 122 IKHR------------------RIPILFFANKMDL 138
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 2e-07
Identities = 21/128 (16%), Positives = 42/128 (32%), Gaps = 24/128 (18%)
Query: 67 LDRLGAKEYQPTEQDILRTRVKTTGIVEVHF--------SFKNLNFKLFDVGGQRSERKK 118
L + +K + + +++ + + F F L+ V GQ
Sbjct: 31 LKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS 90
Query: 119 WIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN-----KWFTDTSII 173
V I+F D NR++ + + ++ N D I+
Sbjct: 91 RKLILRGVDGIVFVA-----------DSAPNRLRANAESMRNMRENLAEYGLTLDDVPIV 139
Query: 174 LFLNKKDL 181
+ +NK+DL
Sbjct: 140 IQVNKRDL 147
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} Length = 227 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 1e-06
Identities = 32/181 (17%), Positives = 57/181 (31%), Gaps = 26/181 (14%)
Query: 1 MNGTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSA 60
M G L+ + +V ++ SEEL + + G +QLN+
Sbjct: 21 MFGPGLEELNTSLVLSLM--------SSEELCPTAG---LPQRQIDGIGSGVNFQLNNQH 69
Query: 61 KYFLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWI 120
K+ + L KE R R + V+ F N G + S +
Sbjct: 70 KFNILILYSTTRKE---------RDRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQ 120
Query: 121 HCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180
E V I+ + + +DE ++ M + F S ++L +
Sbjct: 121 KVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSG------RPLLVLSCISQG 174
Query: 181 L 181
Sbjct: 175 D 175
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 1e-05
Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 14/103 (13%)
Query: 89 TTGIVEVHFSFK-NLNFKLFDVGGQRSERKKWI---HCFEDVTAIIFCVAMSEYDQVLHE 144
T I + S +NF+++D GQ F A+I+ + D
Sbjct: 55 TNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVI-----DAQDDY 109
Query: 145 DETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK 187
E R+ ++ + D + +F++K D + K
Sbjct: 110 MEALTRLHITVSKAYKVN-----PDMNFEVFIHKVDGLSDDHK 147
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-05
Identities = 24/133 (18%), Positives = 38/133 (28%), Gaps = 29/133 (21%)
Query: 67 LDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDV 126
L L +PT V + + + L D G R K +
Sbjct: 65 LTLLTTDSVRPT--------VVSQEPLSAA-DYDGSGVTLVDFPGHVKLRYKLSDYLKTR 115
Query: 127 T----AIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSI---CNNKWFTDTSIILFLNKK 179
+IF V S D ++ + + I + I++ NK
Sbjct: 116 AKFVKGLIFMVD-STVDP--------KKLTTTAEFLVDILSITESSCENGIDILIACNKS 166
Query: 180 DLF----EEKIKK 188
+LF KIK
Sbjct: 167 ELFTARPPSKIKD 179
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 5e-05
Identities = 19/102 (18%), Positives = 30/102 (29%), Gaps = 20/102 (19%)
Query: 98 SFKNLNFKLFDVGGQRSERKKWIHCFEDVT----AIIFCVAMSEYDQVLHEDETTNRMQE 153
+ L D G R K + +IF V S D ++
Sbjct: 51 DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVD-STVDP--------KKLTT 101
Query: 154 SLKLFDSI---CNNKWFTDTSIILFLNKKDLF----EEKIKK 188
+ + I + I++ NK +LF KIK
Sbjct: 102 TAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKD 143
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 3e-04
Identities = 21/132 (15%), Positives = 50/132 (37%), Gaps = 34/132 (25%)
Query: 107 FDVGGQRSERKKWIHCF-------------EDVTAIIFCVAMSEYDQVLHEDETTNRMQE 153
F+ G + + K + F +D+ I + E D ++ + +
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSIL--SKEEIDHIIMSK---DAVSG 63
Query: 154 SLKLFDSICNN-----KWFTDTSIIL---FLNKKDLFEEKIKKSPLTICFPEYAGKRPGE 205
+L+LF ++ + + F + + + FL + E+ + S +T + E
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP-IKTEQRQPSMMTRMYIEQ------- 115
Query: 206 RNRMQESLKLFD 217
R+R+ ++F
Sbjct: 116 RDRLYNDNQVFA 127
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214 | Back alignment and structure |
|---|
Score = 38.6 bits (90), Expect = 9e-04
Identities = 15/86 (17%), Positives = 36/86 (41%), Gaps = 12/86 (13%)
Query: 100 KNLNFKLFDVGGQRSERKK-WIHCFEDVTAIIFCVAMSEYDQVLHE--DETTNRMQESLK 156
+ + L D+ G S R + A++F V + + + + + + + +S+
Sbjct: 52 RGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMA 111
Query: 157 LFDSICNNKWFTDTSIILFLNKKDLF 182
L +S S+++ NK+D+
Sbjct: 112 LKNSP---------SLLIACNKQDIA 128
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 262 | |||
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 100.0 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 100.0 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 100.0 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 100.0 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 100.0 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 100.0 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 99.83 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 99.76 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 99.76 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 99.76 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 99.75 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 99.75 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 99.75 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 99.74 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.74 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 99.74 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 99.74 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 99.73 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 99.72 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 99.72 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.72 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 99.71 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.7 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.7 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.68 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.68 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.68 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.68 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.67 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.67 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 99.66 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.66 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.66 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.66 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.66 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.66 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.66 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.66 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.66 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.65 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.65 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.65 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.65 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.65 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.65 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.65 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.65 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.65 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.65 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.65 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.65 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.65 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.65 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.64 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.64 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.64 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.64 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.64 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.64 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.64 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.63 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.63 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.63 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.63 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.63 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.63 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.63 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.62 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.62 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.62 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.61 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.61 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.61 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.61 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.61 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.61 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.61 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.61 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.61 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.61 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.6 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.6 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.59 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.59 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.59 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.59 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 99.58 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.58 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.58 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.58 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.58 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.58 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.58 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.58 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.57 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.57 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.57 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.56 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.55 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.54 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.53 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.53 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.53 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.52 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.52 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.52 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.52 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.51 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.5 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.23 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.47 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.46 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.44 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.44 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.42 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.4 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.38 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.36 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.36 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.34 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.32 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.31 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.3 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.29 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.27 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.22 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.21 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.19 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.16 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.16 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.16 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.16 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.14 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.11 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.11 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.09 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.09 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.08 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.06 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.06 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.05 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.04 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.03 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.03 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.03 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.02 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.02 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.0 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 98.98 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 98.98 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 98.97 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 98.96 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.96 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 98.96 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 98.96 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 98.95 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 98.93 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 98.92 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 98.91 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 98.89 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 98.89 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 98.86 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 98.85 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 98.84 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 98.84 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 98.84 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.8 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 98.8 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 98.75 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 98.73 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 98.68 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 98.67 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 98.66 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 98.66 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.65 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 98.64 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 98.63 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 98.52 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.52 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 98.49 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 98.48 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 98.45 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.43 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 98.42 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 98.42 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 98.41 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 98.4 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.28 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 98.25 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 98.13 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 98.1 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 98.09 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 98.06 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 97.99 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 97.96 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 97.87 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 97.83 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 97.8 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 97.78 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 97.78 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 97.68 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 97.49 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 97.38 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 97.27 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.21 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.05 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 97.02 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 96.98 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 96.97 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 96.74 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 96.58 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 96.51 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 96.18 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 95.29 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 94.3 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 93.78 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 92.12 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 81.67 |
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-58 Score=410.71 Aligned_cols=233 Identities=47% Similarity=0.772 Sum_probs=219.0
Q ss_pred CCCCCHHHHHHHHhhhhccCCCCCCcHHHHHHHHHhcCChHHHHHHhcccccccccchhHHHhhccccCCCCCCcCcccc
Q psy6623 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQDI 82 (262)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d~~v~~~~~~~~~~~l~d~~~yfl~~l~ri~~~~y~pt~~Di 82 (262)
++|+++.+++.++.+.... ...+++++++.|..||+||+||+||.++++|+|+|+++|||++++|++.++|.||.+|+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~l~Ri~~~~Y~PT~~Di 147 (327)
T 3ohm_A 70 KYEHNKAHAQLVREVDVEK--VSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDV 147 (327)
T ss_dssp SSTHHHHHHHHHHTCCGGG--CCCCCTTHHHHHHHHHTCHHHHHHHHGGGGSCCCTTHHHHHTTHHHHHSTTCCCCHHHH
T ss_pred CCchhHHHHHHHhcccccc--cccccHHHHHHHHHHHcCHHHHHHHHccccceecccHHHHHHHHHHHhccCCCccccch
Confidence 4678888999998775532 34799999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 83 LRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 83 l~~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
++++.||+|+.+..+.++++++++||||||+++|++|.+||++++|+|||+|+|+|||++.++.+.+++.+++.+|++++
T Consensus 148 lr~r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~ 227 (327)
T 3ohm_A 148 LRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTII 227 (327)
T ss_dssp TTCCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHH
T ss_pred hcccCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCC-cch--hHHHHHHhhh------ccceeecccccccceeee
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKR-PGE--RNRMQESLKL------FDSICNNKWFTDTSIILF 233 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~-~~~--~~~i~~~f~~------~~~~~~~tsA~d~~~I~~ 233 (262)
+++++.++|++|||||+|++.+|+...++..|||+|.|+. +.+ .+||.++|.+ +.+|+|+|||+|++||+.
T Consensus 228 ~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~ 307 (327)
T 3ohm_A 228 TYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRF 307 (327)
T ss_dssp TSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHH
T ss_pred hhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHH
Confidence 9999999999999999999999999999999999999964 444 8899999975 679999999999999999
Q ss_pred eehh
Q psy6623 234 LNKK 237 (262)
Q Consensus 234 ~f~~ 237 (262)
+|.+
T Consensus 308 vF~~ 311 (327)
T 3ohm_A 308 VFAA 311 (327)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9975
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-56 Score=397.40 Aligned_cols=215 Identities=41% Similarity=0.686 Sum_probs=203.9
Q ss_pred CCCCCcHHHHHHHHHhcCChHHHHHHhcccccccccchhHHHhhccccCCCCCCcCccccceeeecccceeEEEEeeecc
Q psy6623 23 DTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNL 102 (262)
Q Consensus 23 ~~~~~~~~~~~~i~~lw~d~~v~~~~~~~~~~~l~d~~~yfl~~l~ri~~~~y~pt~~Dil~~~~pT~Gi~~~~~~~~~~ 102 (262)
....+++++++.|..||+||+||+||.++++|+|+|++.|||++++|++.++|.||.+|+++++.||+|+.+..+.++++
T Consensus 82 ~~~~~~~~~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~l~Ri~~~~Y~PT~~Dil~~~~~TiGi~~~~~~~~~v 161 (340)
T 4fid_A 82 VTLPFSPELVGDVEALWADEGIQATYEESAKFQLPDCAKYLFENVKRIAMEDYVPTEEDLIHNRTKTTGIHEYDFVVKDI 161 (340)
T ss_dssp CCSSCCTTHHHHHHHHHHSHHHHHHHHTCTTSCCCTTHHHHHHTHHHHSSTTCCCCHHHHHHSCCCCCSCEEEEEESSSC
T ss_pred CCCCCCHHHHHHHHHHHcCHHHHHHHHhcccccccchhhhHHHHHHHHhcccCCccccceeecccceeeeEEEEEEeeee
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchh
Q psy6623 103 NFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182 (262)
Q Consensus 103 ~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~ 182 (262)
++++||||||+++|++|.+||++++|+|||+|+|+|||++.|+.+.+++.+++.+|+++++++++.++|++|||||+|++
T Consensus 162 ~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~ 241 (340)
T 4fid_A 162 PFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLF 241 (340)
T ss_dssp EEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHH
T ss_pred eeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCcccCCCCCCCCcch--hHHHHHHh------hh-----------------ccceeecccccccceeeeeehh
Q psy6623 183 EEKIKKSPLTICFPEYAGKRPGE--RNRMQESL------KL-----------------FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 183 ~~kl~~~~l~~~fp~~~g~~~~~--~~~i~~~f------~~-----------------~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+|+...++.++||+|.|+++.+ .+|+.++| .+ +.+|+|+|||+|+.||+.+|+.
T Consensus 242 ~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~ 321 (340)
T 4fid_A 242 EEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFML 321 (340)
T ss_dssp HHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHH
T ss_pred hhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHH
Confidence 99999999999999999987665 89999999 21 4699999999999999999986
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-54 Score=386.85 Aligned_cols=234 Identities=63% Similarity=1.014 Sum_probs=217.1
Q ss_pred CCCCCHHHHHHHHhhhhccCCCCCCcHHHHHHHHHhcCChHHHHHHhcccccccccchhHHHhhccccCCCCCCcCcccc
Q psy6623 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQDI 82 (262)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d~~v~~~~~~~~~~~l~d~~~yfl~~l~ri~~~~y~pt~~Di 82 (262)
++|+++..+..++.+.....+ ..+++++++.|..||+||+||+||.++++|+|+|+++|||++++|++.++|.||.+|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~lw~d~~iq~~~~~~~e~~l~dsa~yfl~~~~ri~~~~Y~PT~~Di 173 (353)
T 1cip_A 95 GDAARADDARQLFVLAGAAEE-GFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDV 173 (353)
T ss_dssp SSTTHHHHHHHHHHHHHHHTT-TCCCHHHHHHHHHHHHCHHHHHHHTTGGGSCCCTTHHHHHTTHHHHTSTTCCCCHHHH
T ss_pred CCcchHHHHHHHHhhcccccc-ccCCHHHHHHHHHHHCCHHHHHHHHhhhhcccCccHHHHHHHHHHHhcCCCCCCcccc
Confidence 356778888888888654332 5799999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 83 LRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 83 l~~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
++++.||+|+.+..+.++++++++||||||+++|++|.+||+++++||||+|+|+||+++.|+++.+++.+++.+|++++
T Consensus 174 l~~~~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~ 253 (353)
T 1cip_A 174 LRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSIC 253 (353)
T ss_dssp HTCCCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHH
T ss_pred ccccCceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcch--hHHHHHHhhh-------ccceeecccccccceeee
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGE--RNRMQESLKL-------FDSICNNKWFTDTSIILF 233 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~--~~~i~~~f~~-------~~~~~~~tsA~d~~~I~~ 233 (262)
+++++.++|++||+||+|++.+|+...++..|||+|.|..+.+ .+|+..+|.+ +.+++|+|||++|+||++
T Consensus 254 ~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~ 333 (353)
T 1cip_A 254 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQF 333 (353)
T ss_dssp TCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHH
T ss_pred cCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHH
Confidence 9988899999999999999999999899999999999976655 7888877643 578999999999999999
Q ss_pred eehh
Q psy6623 234 LNKK 237 (262)
Q Consensus 234 ~f~~ 237 (262)
+|+.
T Consensus 334 vF~~ 337 (353)
T 1cip_A 334 VFDA 337 (353)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9964
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-54 Score=387.92 Aligned_cols=234 Identities=42% Similarity=0.697 Sum_probs=206.8
Q ss_pred CCCCCHHHHHHHHhhhhccC-------CCCCCcHHHHHHHHHhcCChHHHHHHhcccccccccchhHHHhhccccCCCCC
Q psy6623 3 GTSLDTTDAKMVFDVIQRME-------DTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEY 75 (262)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~lw~d~~v~~~~~~~~~~~l~d~~~yfl~~l~ri~~~~y 75 (262)
++|.++..++.++.+..... +...| +++++.|..||+||+||+||.++++|+|+|+++|||++++||+.++|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~i~~LW~d~~iq~~~~r~~e~~l~ds~~yfl~~~~ri~~~~Y 174 (362)
T 1zcb_A 96 GDNKNQLHGDKLMAFDTRAPMAAQGMVETRVF-LQYLPAIRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDY 174 (362)
T ss_dssp SSGGGHHHHHHHHTSCSSSHHHHTTCCCHHHH-HHHHHHHHHHHHCHHHHHHHHTGGGSCCCTTHHHHHTTHHHHTSTTC
T ss_pred CCcccHHHHHHHHhhcccccccccccCcchhH-HHHHHHHHHHHCCHHHHHHHHhcchhhhcccHHHHHHHHHHHhcCCC
Confidence 36777888888887754211 11356 89999999999999999999999999999999999999999999999
Q ss_pred CcCccccceeeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHH
Q psy6623 76 QPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL 155 (262)
Q Consensus 76 ~pt~~Dil~~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~ 155 (262)
.||.+|+++++.||+|+.+..+.++++++++||||||+++|++|.+||++++++|||+|+|+|||++.|+++.+++.++.
T Consensus 175 ~PT~~Dil~~r~~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~ 254 (362)
T 1zcb_A 175 IPSQQDILLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESL 254 (362)
T ss_dssp CCCHHHHHHCCCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHH
T ss_pred CCChhhhhhccCCccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCC-Ccch--hHHHHHHhhh-------ccceeecccc
Q psy6623 156 KLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGK-RPGE--RNRMQESLKL-------FDSICNNKWF 225 (262)
Q Consensus 156 ~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~-~~~~--~~~i~~~f~~-------~~~~~~~tsA 225 (262)
.+|..+++++++.++|++||+||+||+.+|+...++..|||+|.|. .+.+ .+|+..+|.. +.+++|+|||
T Consensus 255 ~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA 334 (362)
T 1zcb_A 255 NIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTA 334 (362)
T ss_dssp HHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCT
T ss_pred HHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEec
Confidence 9999999998889999999999999999999999999999999996 5544 7888887744 4689999999
Q ss_pred cccceeeeeehh
Q psy6623 226 TDTSIILFLNKK 237 (262)
Q Consensus 226 ~d~~~I~~~f~~ 237 (262)
++|+||+++|+.
T Consensus 335 ~d~~nV~~vF~~ 346 (362)
T 1zcb_A 335 INTENIRLVFRD 346 (362)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCchhHHHHHHH
Confidence 999999999974
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-53 Score=387.40 Aligned_cols=233 Identities=43% Similarity=0.726 Sum_probs=212.0
Q ss_pred CCCCCHHHHHHHHhhhhccCCCCCCcHHHHHHHHHhcCChHHHHHHhcccccccccchhHHHhhccccCCCCCCcCcccc
Q psy6623 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQDI 82 (262)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d~~v~~~~~~~~~~~l~d~~~yfl~~l~ri~~~~y~pt~~Di 82 (262)
++|+++..++.++.+... ....|++++++.|..||+||+||+||.++++|+|+|+++|||++++||+.++|.||.+|+
T Consensus 120 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~~~ri~~~~Y~PT~~Di 197 (402)
T 1azs_C 120 ANPENQFRVDYILSVMNV--PDFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQDDYVPSDQDL 197 (402)
T ss_dssp SSGGGHHHHHHHHHTTTC--SSCCCCHHHHHHHHHHHHCHHHHHHHTTGGGSCCCTTHHHHHTTHHHHTCTTCCCCHHHH
T ss_pred CCchhHHHHHHHHhhccc--CCCCCCHHHHHHHHHHHcCHHHHHHHHhcccceeccchhhHHHHHHHhhccccCCccccc
Confidence 377888888888887642 225799999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 83 LRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 83 l~~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
++++.+|+|+.+..+.+++++++|||||||+++|++|.+||++++++|||+|+|+|||++.|+++.+++.++..||+.++
T Consensus 198 l~~r~~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~ 277 (402)
T 1azs_C 198 LRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIW 277 (402)
T ss_dssp HHCCCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHH
T ss_pred cccccceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhc--cCCCcccCCCCCC------------CC-cch--hHHHHHHhhh---------c
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIK--KSPLTICFPEYAG------------KR-PGE--RNRMQESLKL---------F 216 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~--~~~l~~~fp~~~g------------~~-~~~--~~~i~~~f~~---------~ 216 (262)
+++++.++|++|||||+||+.+|+. ..++.+|||+|.| .+ +.+ ..|+.++|.+ +
T Consensus 278 ~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~ 357 (402)
T 1azs_C 278 NNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRH 357 (402)
T ss_dssp TCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSS
T ss_pred hcccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCc
Confidence 9888899999999999999998885 5689999999985 21 122 6788777743 3
Q ss_pred cceeecccccccceeeeeehh
Q psy6623 217 DSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 217 ~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+++|+|||+||+||+++|..
T Consensus 358 ~~~~~~TSA~d~~nV~~vF~~ 378 (402)
T 1azs_C 358 YCYPHFTCAVDTENIRRVFND 378 (402)
T ss_dssp CEEEEECCTTCHHHHHHHHHH
T ss_pred ccEEEEEEeecCcCHHHHHHH
Confidence 689999999999999999975
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-52 Score=373.25 Aligned_cols=233 Identities=39% Similarity=0.663 Sum_probs=203.2
Q ss_pred CCCCHHHHHHHHhhhhccCCCCCCcHHHHHHHHHhcCChHHHHHHhcccccccccchhHHHhhccccCCCCCCcCccccc
Q psy6623 4 TSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQDIL 83 (262)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d~~v~~~~~~~~~~~l~d~~~yfl~~l~ri~~~~y~pt~~Dil 83 (262)
+|.++..+..+.......+ ...+++++++.|..||+||+||+||.++++|+|+|+++|||++++|++.++|.||.+|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~LW~D~~vq~~~~r~~e~~l~d~~~yfl~~~~ri~~~~Y~PT~~D~~ 158 (354)
T 2xtz_A 80 SSESIAIGEKLSEIGGRLD-YPRLTKDIAEGIETLWKDPAIQETCARGNELQVPDCTKYLMENLKRLSDINYIPTKEDVL 158 (354)
T ss_dssp CHHHHHHHHHHHHHHHHCS-SCCCCHHHHHHHHHHTTCHHHHHHHTTGGGTTCCTTHHHHHTSHHHHHSTTCCCCHHHHH
T ss_pred ChhHHHHHHHHHhcccccc-cccCCHHHHHHHHHHHCCHHHHHHHHhcchhhhhccHHHHHHHHHHHhcCCCCCCchhee
Confidence 3455556666655543333 257899999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccceeEEEEee------eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHH
Q psy6623 84 RTRVKTTGIVEVHFSF------KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKL 157 (262)
Q Consensus 84 ~~~~pT~Gi~~~~~~~------~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~ 157 (262)
+++.+|+|+.+..|.+ +.+++++||||||+++|++|.+||++++++|||+|+++|||++.|+.+.+++.++..+
T Consensus 159 ~~r~~T~Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~ 238 (354)
T 2xtz_A 159 YARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKEL 238 (354)
T ss_dssp HCCCCCCSEEEEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHH
T ss_pred eecccccceeeEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHH
Confidence 9999999999999988 4589999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCccc--CCCCC----CCCcch--hHHHHHHhhh------------cc
Q psy6623 158 FDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--FPEYA----GKRPGE--RNRMQESLKL------------FD 217 (262)
Q Consensus 158 ~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~--fp~~~----g~~~~~--~~~i~~~f~~------------~~ 217 (262)
|+.+++++++.++|++|||||+||+.+|+...++..+ ||+|. |+++.+ .+|+.++|.+ +.
T Consensus 239 ~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~ 318 (354)
T 2xtz_A 239 FDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRV 318 (354)
T ss_dssp HHHHHTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSC
T ss_pred HHHHHhccccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcc
Confidence 9999998888899999999999999988877776655 99997 433333 7788887742 45
Q ss_pred ceeecccccccceeeeeehh
Q psy6623 218 SICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 218 ~~~~~tsA~d~~~I~~~f~~ 237 (262)
+++|+|||+||+||+++|+.
T Consensus 319 ~~~~eTSA~d~~nV~~vF~~ 338 (354)
T 2xtz_A 319 FKIYRTTALDQKLVKKTFKL 338 (354)
T ss_dssp EEEEECCTTCHHHHHHHHHH
T ss_pred eEEEEEEeecchhHHHHHHH
Confidence 78899999999999999974
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.6e-21 Score=161.10 Aligned_cols=123 Identities=18% Similarity=0.222 Sum_probs=88.8
Q ss_pred ecccceeEEE--Eee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEVH--FSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~~--~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|..... +.+ ..++++||||+||++++.++..||++++++|+|+|+++ ..++.....|+..+.
T Consensus 43 ~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~----------~~Sf~~i~~~~~~i~ 112 (216)
T 4dkx_A 43 QATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITN----------VNSFQQTTKWIDDVR 112 (216)
T ss_dssp -------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecch----------hHHHHHHHHHHHHHH
Confidence 5677754332 333 34789999999999999999999999999999999999 788888888888776
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
... ..++|++|||||+|+..++... .+-..+......+.+++|||++|.||+++|..
T Consensus 113 ~~~-~~~~piilVgNK~Dl~~~r~V~-----------------~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~ 169 (216)
T 4dkx_A 113 TER-GSDVIIMLVGNKTDLADKRQVS-----------------IEEGERKAKELNVMFIETSAKAGYNVKQLFRR 169 (216)
T ss_dssp HHH-TTSSEEEEEEECTTCGGGCCSC-----------------HHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred Hhc-CCCCeEEEEeeccchHhcCccc-----------------HHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHH
Confidence 542 3579999999999997654211 11111222224577899999999999999974
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5.3e-19 Score=145.73 Aligned_cols=141 Identities=21% Similarity=0.233 Sum_probs=95.9
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+.||+|.....+.++++.+.+|||+|++.++..|..|+++++++|+|+|+++ ..++.+...++..+....
T Consensus 53 ~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~----------~~s~~~~~~~~~~~~~~~ 122 (198)
T 1f6b_A 53 HVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCAD----------HERLLESKEELDSLMTDE 122 (198)
T ss_dssp --CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCG
T ss_pred cCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHhCc
Confidence 3577777777788888999999999999999999999999999999999998 678999999999988765
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhh---hccceeecccccccceeeeeehhhHHHh
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLK---LFDSICNNKWFTDTSIILFLNKKDLFEE 242 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~---~~~~~~~~tsA~d~~~I~~~f~~~lL~~ 242 (262)
...++|++|++||+|+..+ .....+...+....-...... ..+. .+.+.+++|||++|+||+++|+ +|.+
T Consensus 123 ~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~SA~~g~gv~~l~~--~l~~ 195 (198)
T 1f6b_A 123 TIANVPILILGNKIDRPEA-ISEERLREMFGLYGQTTGKGS----VSLKELNARPLEVFMCSVLKRQGYGEGFR--WMAQ 195 (198)
T ss_dssp GGTTSCEEEEEECTTSTTC-CCHHHHHHHHTCTTTCCCSSC----CCTTTCCSCCEEEEECBTTTTBSHHHHHH--HHHT
T ss_pred ccCCCcEEEEEECCCcccc-CCHHHHHHHhCcccccccccc----cccccccCceEEEEEEECCCCCCHHHHHH--HHHH
Confidence 5568999999999999641 111111111100000000000 0000 1346788999999999999994 4544
Q ss_pred h
Q psy6623 243 K 243 (262)
Q Consensus 243 ~ 243 (262)
.
T Consensus 196 ~ 196 (198)
T 1f6b_A 196 Y 196 (198)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-18 Score=137.73 Aligned_cols=131 Identities=21% Similarity=0.378 Sum_probs=100.5
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|+....+..+++.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....++..+.....
T Consensus 29 ~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~ 98 (164)
T 1r8s_A 29 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RERVNEAREELMRMLAEDE 98 (164)
T ss_dssp CCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCGG
T ss_pred cCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHhchh
Confidence 567787777778888999999999999999999999999999999999998 6788888899999887666
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHH-HHhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQ-ESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~-~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
..++|++|++||+|+..+. ....+ .+.+. .....+.+.+++|||++|.||+++|+ +|...+
T Consensus 99 ~~~~piilv~nK~Dl~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~--~l~~~i 160 (164)
T 1r8s_A 99 LRDAVLLVFANKQDLPNAM-NAAEI--------------TDKLGLHSLRHRNWYIQATCATSGDGLYEGLD--WLSNQL 160 (164)
T ss_dssp GTTCEEEEEEECTTSTTCC-CHHHH--------------HHHTTGGGCSSCCEEEEECBTTTTBTHHHHHH--HHHHHC
T ss_pred hcCCeEEEEEECcCCcCCC-CHHHH--------------HHHhCcccccCccEEEEEcccCCCcCHHHHHH--HHHHHH
Confidence 6789999999999996521 00000 00000 00111456788999999999999995 444443
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-18 Score=139.79 Aligned_cols=132 Identities=15% Similarity=0.249 Sum_probs=102.5
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+.||+|+....+.++++.+++||++|++.++..|..|+++++++|+|+|+++ ..++.+...++..++...
T Consensus 44 ~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~ 113 (181)
T 1fzq_A 44 ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSAD----------RKRFEETGQELTELLEEE 113 (181)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTC----------GGGHHHHHHHHHHHTTCG
T ss_pred ccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcC----------HHHHHHHHHHHHHHHhCh
Confidence 4789998888888889999999999999999999999999999999999998 678888888988888765
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHH-HHhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQ-ESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~-~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
...+.|++|++||+|+..+.- ...+ .+.+. .....+.+.+++|||++|+||.++|+ +|.+.+
T Consensus 114 ~~~~~piilv~NK~Dl~~~~~-~~~~--------------~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~--~l~~~~ 176 (181)
T 1fzq_A 114 KLSCVPVLIFANKQDLLTAAP-ASEI--------------AEGLNLHTIRDRVWQIQSCSALTGEGVQDGMN--WVCKNV 176 (181)
T ss_dssp GGTTCCEEEEEECTTSTTCCC-HHHH--------------HHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH--HHHHTC
T ss_pred hhcCCCEEEEEECcCcccCCC-HHHH--------------HHHhCchhccCCceEEEEccCCCCCCHHHHHH--HHHHHH
Confidence 557899999999999965310 0000 00000 00112456789999999999999995 455444
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.7e-18 Score=135.94 Aligned_cols=132 Identities=21% Similarity=0.306 Sum_probs=102.9
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|+....+.+++..+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..++....
T Consensus 36 ~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~ 105 (171)
T 1upt_A 36 IPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCD----------RDRIGISKSELVAMLEEEE 105 (171)
T ss_dssp CCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTC----------CTTHHHHHHHHHHHHTCGG
T ss_pred CCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHhchh
Confidence 578888888888889999999999999999999999999999999999998 6788889999999887655
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHH-HHhhhccceeecccccccceeeeeehhhHHHhhcc
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQ-ESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK 245 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~-~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~ 245 (262)
..+.|++|++||+|+..+.- ...+ .+.+. .....+.+.+++|||++|.||.++|+ +|...+.
T Consensus 106 ~~~~piilv~nK~Dl~~~~~-~~~~--------------~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~--~l~~~i~ 168 (171)
T 1upt_A 106 LRKAILVVFANKQDMEQAMT-SSEM--------------ANSLGLPALKDRKWQIFKTSATKGTGLDEAME--WLVETLK 168 (171)
T ss_dssp GTTCEEEEEEECTTSTTCCC-HHHH--------------HHHHTGGGCTTSCEEEEECCTTTCTTHHHHHH--HHHHHHH
T ss_pred hCCCEEEEEEECCCCcCCCC-HHHH--------------HHHhCchhccCCceEEEECcCCCCcCHHHHHH--HHHHHHh
Confidence 57899999999999965210 0000 11111 11122456789999999999999995 4555443
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-18 Score=140.50 Aligned_cols=132 Identities=20% Similarity=0.333 Sum_probs=103.0
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
..||+|+....+.+++..+.+|||+|++.++..|..++++++++|+|+|+++ ..++.+...++..++...
T Consensus 50 ~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~ 119 (189)
T 2x77_A 50 TVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTD----------RDRMGVAKHELYALLDED 119 (189)
T ss_dssp ECSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTC----------CTTHHHHHHHHHHHHTCS
T ss_pred cCCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhhh
Confidence 3689998888888889999999999999999999999999999999999998 678899999999998776
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHH-HHhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQ-ESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~-~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
...++|++|++||+|+..+.- ...+ .+.+. .....+.+.+++|||++|+||+++|+ +|.+.+
T Consensus 120 ~~~~~piilv~nK~Dl~~~~~-~~~~--------------~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~--~l~~~i 182 (189)
T 2x77_A 120 ELRKSLLLIFANKQDLPDAAS-EAEI--------------AEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMD--WLVERL 182 (189)
T ss_dssp TTTTCEEEEEEECTTSTTCCC-HHHH--------------HHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH--HHHHHH
T ss_pred hcCCCeEEEEEECCCCcCCCC-HHHH--------------HHHhChhhccCCceEEEEccCCCccCHHHHHH--HHHHHH
Confidence 667899999999999965210 0000 00000 01112456789999999999999995 444444
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-18 Score=140.41 Aligned_cols=133 Identities=19% Similarity=0.224 Sum_probs=98.7
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|.....+.++++++.+||++|++.++..|..|+++++++|+|+|+++ ..++.+...++..+.....
T Consensus 52 ~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~ 121 (190)
T 1m2o_B 52 QPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAAD----------PERFDEARVELDALFNIAE 121 (190)
T ss_dssp CCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTC----------GGGHHHHHHHHHHHHTCGG
T ss_pred ccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCC----------hHHHHHHHHHHHHHHcchh
Confidence 567777777888888999999999999999999999999999999999998 6788999999999887655
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
..+.|++|++||+|+..+ .....+.+.+....... ...+ ...+.+.+++|||++|+||+++|+
T Consensus 122 ~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~Sa~~g~gi~~l~~ 184 (190)
T 1m2o_B 122 LKDVPFVILGNKIDAPNA-VSEAELRSALGLLNTTG---SQRI---EGQRPVEVFMCSVVMRNGYLEAFQ 184 (190)
T ss_dssp GTTCCEEEEEECTTSTTC-CCHHHHHHHTTCSSCCC------C---CSSCCEEEEECBTTTTBSHHHHHH
T ss_pred hcCCCEEEEEECCCCcCC-CCHHHHHHHhCCccccc---cccc---cccceEEEEEeECCcCCCHHHHHH
Confidence 568999999999999651 11111111111100000 0000 011446788999999999999995
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.74 E-value=3.5e-18 Score=138.87 Aligned_cols=134 Identities=16% Similarity=0.217 Sum_probs=100.3
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+.||+|+....+.+++..+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+....
T Consensus 44 ~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~ 113 (187)
T 1zj6_A 44 TSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD----------RERISVTREELYKMLAHE 113 (187)
T ss_dssp EECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTC----------TTTHHHHHHHHHHHHTSG
T ss_pred CcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhch
Confidence 3688898888888889999999999999999999999999999999999998 678999999999998765
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHH-HhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQE-SLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~-~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
...+.|++|++||+|+..+. ....+ .+++.. .+....+.+++|||++|+||+++|+ +|.+.+
T Consensus 114 ~~~~~piilv~NK~Dl~~~~-~~~~i--------------~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~--~l~~~~ 176 (187)
T 1zj6_A 114 DLRKAGLLIFANKQDVKECM-TVAEI--------------SQFLKLTSIKDHQWHIQACCALTGEGLCQGLE--WMMSRL 176 (187)
T ss_dssp GGTTCEEEEEEECTTSTTCC-CHHHH--------------HHHHTGGGCCSSCEEEEECBTTTTBTHHHHHH--HHHHHH
T ss_pred hhCCCeEEEEEECCCCcCCC-CHHHH--------------HHHhChhhhcCCCcEEEEccCCCCcCHHHHHH--HHHHHH
Confidence 45689999999999996421 00000 111111 1222457789999999999999995 555555
Q ss_pred cC
Q psy6623 245 KK 246 (262)
Q Consensus 245 ~~ 246 (262)
..
T Consensus 177 ~~ 178 (187)
T 1zj6_A 177 KI 178 (187)
T ss_dssp CC
T ss_pred HH
Confidence 44
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.74 E-value=5e-18 Score=138.74 Aligned_cols=126 Identities=18% Similarity=0.201 Sum_probs=98.9
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|+....+..+++.+.+|||+|++.++..|..|+++++++|+|+|+++ ..++.+...++..++....
T Consensus 48 ~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~s~~~~~~~~~~~~~~~~ 117 (199)
T 4bas_A 48 TATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSD----------HLRLCVVKSEIQAMLKHED 117 (199)
T ss_dssp CCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTC----------GGGHHHHHHHHHHHHTSHH
T ss_pred ccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCc----------HHHHHHHHHHHHHHHhChh
Confidence 678888888888888999999999999999999999999999999999998 6788888889988876532
Q ss_pred C-------CCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHH-HHHh-hhccceeecccccccceeeeeehh
Q psy6623 167 F-------TDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRM-QESL-KLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 167 ~-------~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i-~~~f-~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
. .++|++||+||+|+..+.. ...+ .+.+ ...+ ....+.+++|||++|+||+++|+.
T Consensus 118 ~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~--------------~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 182 (199)
T 4bas_A 118 IRRELPGGGRVPFLFFANKMDAAGAKT-AAEL--------------VEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSW 182 (199)
T ss_dssp HHSBCTTSCBCCEEEEEECTTSTTCCC-HHHH--------------HHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHH
T ss_pred hhhcccccCCCCEEEEEECcCCCCCCC-HHHH--------------HHHhcchhhccCCeeEEEEeeCCCccCHHHHHHH
Confidence 2 2789999999999975310 0000 1111 1111 335678899999999999999964
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-18 Score=140.85 Aligned_cols=128 Identities=22% Similarity=0.373 Sum_probs=97.5
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
..||+|+....+..+++.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+....
T Consensus 57 ~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~----------~~s~~~~~~~l~~~~~~~ 126 (192)
T 2b6h_A 57 TIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RERVQESADELQKMLQED 126 (192)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTC----------GGGHHHHHHHHHHHHTCG
T ss_pred cCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHhccc
Confidence 3689998888888889999999999999999999999999999999999998 678888889999988766
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHH-----hhhccceeecccccccceeeeeehhhHH
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQES-----LKLFDSICNNKWFTDTSIILFLNKKDLF 240 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~-----f~~~~~~~~~tsA~d~~~I~~~f~~~lL 240 (262)
...++|++|++||+|+..+. . .+-+... ...+.+.+++|||++|.||+++|+ +|
T Consensus 127 ~~~~~piilv~NK~Dl~~~~-~------------------~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~--~l 185 (192)
T 2b6h_A 127 ELRDAVLLVFANKQDMPNAM-P------------------VSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLD--WL 185 (192)
T ss_dssp GGTTCEEEEEEECTTSTTCC-C------------------HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHH--HH
T ss_pred ccCCCeEEEEEECCCCCCCC-C------------------HHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHH--HH
Confidence 56789999999999996521 0 0111111 111456788999999999999995 45
Q ss_pred Hhhc
Q psy6623 241 EEKI 244 (262)
Q Consensus 241 ~~~i 244 (262)
...+
T Consensus 186 ~~~i 189 (192)
T 2b6h_A 186 SHEL 189 (192)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 5444
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=8.6e-18 Score=136.20 Aligned_cols=129 Identities=22% Similarity=0.334 Sum_probs=102.8
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+.||+|+....+.+++..+++||++|++.++..|..++++++++|+|+|+++ ..++.+...++..++...
T Consensus 46 ~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~ 115 (186)
T 1ksh_A 46 ISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD----------RQRMQDCQRELQSLLVEE 115 (186)
T ss_dssp CCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCG
T ss_pred ccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHhCh
Confidence 3678888888888889999999999999999999999999999999999998 678888889999988765
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHh-----hhccceeecccccccceeeeeehhhHH
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESL-----KLFDSICNNKWFTDTSIILFLNKKDLF 240 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f-----~~~~~~~~~tsA~d~~~I~~~f~~~lL 240 (262)
...+.|++|++||+|+..+.- .+-+.+.+ ..+.+.+++|||++|.||+++|+ +|
T Consensus 116 ~~~~~piilv~nK~Dl~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~--~l 174 (186)
T 1ksh_A 116 RLAGATLLIFANKQDLPGALS-------------------CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGID--WL 174 (186)
T ss_dssp GGTTCEEEEEEECTTSTTCCC-------------------HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH--HH
T ss_pred hcCCCcEEEEEeCccCCCCCC-------------------HHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHH--HH
Confidence 566899999999999965310 01111111 12456789999999999999995 45
Q ss_pred Hhhcc
Q psy6623 241 EEKIK 245 (262)
Q Consensus 241 ~~~i~ 245 (262)
.+.+.
T Consensus 175 ~~~i~ 179 (186)
T 1ksh_A 175 LDDIS 179 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.5e-18 Score=136.65 Aligned_cols=132 Identities=23% Similarity=0.287 Sum_probs=101.8
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.+|+|+....+.+++..+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+.....
T Consensus 52 ~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~ 121 (190)
T 2h57_A 52 LPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSD----------RLRMVVAKEELDTLLNHPD 121 (190)
T ss_dssp CCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTC----------HHHHHHHHHHHHHHHHSTT
T ss_pred CCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHhChh
Confidence 578888888888889999999999999999999999999999999999998 6778888889998887655
Q ss_pred C--CCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHH-HHhhhccceeecccccccceeeeeehhhHHHhh
Q psy6623 167 F--TDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQ-ESLKLFDSICNNKWFTDTSIILFLNKKDLFEEK 243 (262)
Q Consensus 167 ~--~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~-~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~ 243 (262)
. .++|++||+||+|+..+. ....+ .+++. ..+..+.+.++++||++|+||.++|+ +|.+.
T Consensus 122 ~~~~~~piilv~nK~Dl~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~--~l~~~ 184 (190)
T 2h57_A 122 IKHRRIPILFFANKMDLRDAV-TSVKV--------------SQLLCLENIKDKPWHICASDAIKGEGLQEGVD--WLQDQ 184 (190)
T ss_dssp TTTSCCCEEEEEECTTSTTCC-CHHHH--------------HHHHTGGGCCSSCEEEEECBTTTTBTHHHHHH--HHHHH
T ss_pred hccCCCeEEEEEeCcCcccCC-CHHHH--------------HHHhChhhccCCceEEEEccCCCCcCHHHHHH--HHHHH
Confidence 5 689999999999996421 00000 11111 11112457789999999999999995 45554
Q ss_pred cc
Q psy6623 244 IK 245 (262)
Q Consensus 244 i~ 245 (262)
+.
T Consensus 185 i~ 186 (190)
T 2h57_A 185 IQ 186 (190)
T ss_dssp C-
T ss_pred HH
Confidence 43
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-17 Score=135.47 Aligned_cols=127 Identities=17% Similarity=0.220 Sum_probs=99.8
Q ss_pred eeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 85 ~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
.+.||+|+....+.+++..+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+...
T Consensus 48 ~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~s~~~~~~~~~~~~~~ 117 (181)
T 2h17_A 48 HTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD----------RERISVTREELYKMLAH 117 (181)
T ss_dssp EEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTC----------TTTHHHHHHHHHHHHTC
T ss_pred ccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHhC
Confidence 34788898888888889999999999999999999999999999999999998 67889999999998876
Q ss_pred CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHH-HHhhhccceeecccccccceeeeeeh
Q psy6623 165 KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQ-ESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~-~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
....+.|++|++||+|+..+. ....+ .+++. .......+.+++|||++|.||+++|+
T Consensus 118 ~~~~~~piilv~NK~Dl~~~~-~~~~i--------------~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 175 (181)
T 2h17_A 118 EDLRKAGLLIFANKQDVKECM-TVAEI--------------SQFLKLTSIKDHQWHIQACCALTGEGLCQGLE 175 (181)
T ss_dssp GGGTTCEEEEEEECTTSTTCC-CHHHH--------------HHHTTGGGCCSSCEEEEECBTTTTBTHHHHHH
T ss_pred hhhCCCeEEEEEECCCcccCC-CHHHH--------------HHHhCcccccCCceEEEEccCCCCcCHHHHHH
Confidence 445689999999999986421 00000 01110 01112456789999999999999995
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.3e-18 Score=137.75 Aligned_cols=132 Identities=19% Similarity=0.312 Sum_probs=100.7
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|.....+..+++.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....++..++....
T Consensus 52 ~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~s~~~~~~~~~~~~~~~~ 121 (188)
T 1zd9_A 52 IPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAAD----------QEKIEASKNELHNLLDKPQ 121 (188)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCGG
T ss_pred CCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCC----------HHHHHHHHHHHHHHHhCcc
Confidence 577888777777788999999999999999999999999999999999998 6788888899999887655
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHH-HhhhccceeecccccccceeeeeehhhHHHhhcc
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQE-SLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK 245 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~-~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~ 245 (262)
..++|++|++||+|+..+. ....+ .+.+.. ......+.+++|||++|.||.++|+ +|...+.
T Consensus 122 ~~~~piilv~NK~Dl~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~--~l~~~~~ 184 (188)
T 1zd9_A 122 LQGIPVLVLGNKRDLPGAL-DEKEL--------------IEKMNLSAIQDREICCYSISCKEKDNIDITLQ--WLIQHSK 184 (188)
T ss_dssp GTTCCEEEEEECTTSTTCC-CHHHH--------------HHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH--HHHHTCC
T ss_pred cCCCCEEEEEECCCCccCC-CHHHH--------------HHHhChhhhccCCeeEEEEECCCCCCHHHHHH--HHHHHHH
Confidence 5689999999999996521 00000 000000 0111345678999999999999994 5555544
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.7e-18 Score=137.43 Aligned_cols=151 Identities=13% Similarity=0.073 Sum_probs=103.9
Q ss_pred HHHhhccccCCCCCCcCccccceeeecccceeEEEEee-----eccceeeeecCCccccchhhhccccCCCEEEEeeecc
Q psy6623 62 YFLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSF-----KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMS 136 (262)
Q Consensus 62 yfl~~l~ri~~~~y~pt~~Dil~~~~pT~Gi~~~~~~~-----~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls 136 (262)
-+++.+..-....|.|+...+...+.||+|+......+ ..+.+++|||+|++.++..|..|+++++++|+|+|++
T Consensus 29 sL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~ 108 (198)
T 3t1o_A 29 TNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSA 108 (198)
T ss_dssp HHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECC
T ss_pred HHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECC
Confidence 35555555555666666555544567888877654433 3578999999999999999999999999999999999
Q ss_pred ccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhc
Q psy6623 137 EYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLF 216 (262)
Q Consensus 137 ~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~ 216 (262)
+.. ..+ ...++.....|+..+. ....++|++||+||+|+..+ .. .+-+.+.....
T Consensus 109 ~~~--~~~--~~~s~~~l~~~l~~~~--~~~~~~piilv~NK~Dl~~~-~~------------------~~~~~~~~~~~ 163 (198)
T 3t1o_A 109 PNR--LRA--NAESMRNMRENLAEYG--LTLDDVPIVIQVNKRDLPDA-LP------------------VEMVRAVVDPE 163 (198)
T ss_dssp GGG--HHH--HHHHHHHHHHHHHHTT--CCTTSSCEEEEEECTTSTTC-CC------------------HHHHHHHHCTT
T ss_pred cch--hhH--hHHHHHHHHHHHHhhc--cccCCCCEEEEEEchhcccc-cC------------------HHHHHHHHHhc
Confidence 410 000 0344555555555542 23468999999999998652 00 12233333334
Q ss_pred cc-eeecccccccceeeeeehh
Q psy6623 217 DS-ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 217 ~~-~~~~tsA~d~~~I~~~f~~ 237 (262)
.+ .++++||++|+||+++|+.
T Consensus 164 ~~~~~~~~Sa~~~~gv~~l~~~ 185 (198)
T 3t1o_A 164 GKFPVLEAVATEGKGVFETLKE 185 (198)
T ss_dssp CCSCEEECBGGGTBTHHHHHHH
T ss_pred CCceEEEEecCCCcCHHHHHHH
Confidence 56 7889999999999999964
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-17 Score=134.33 Aligned_cols=128 Identities=24% Similarity=0.286 Sum_probs=96.4
Q ss_pred eeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 85 ~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
.+.||+|+....+.+++..+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+...
T Consensus 45 ~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~ 114 (183)
T 1moz_A 45 TTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTD----------KDRMSTASKELHLMLQE 114 (183)
T ss_dssp EECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTC----------TTTHHHHHHHHHHHTTS
T ss_pred ccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHcC
Confidence 34688998888888888999999999999999999999999999999999998 67889999999998876
Q ss_pred CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHH-Hhhhccceeecccccccceeeeeehh
Q psy6623 165 KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQE-SLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~-~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
....++|++|++||+|+..+. ....+.. ++.. ....+.+.++++||++|+||+++|+.
T Consensus 115 ~~~~~~piilv~nK~Dl~~~~-~~~~i~~--------------~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 173 (183)
T 1moz_A 115 EELQDAALLVFANKQDQPGAL-SASEVSK--------------ELNLVELKDRSWSIVASSAIKGEGITEGLDW 173 (183)
T ss_dssp STTSSCEEEEEEECTTSTTCC-CHHHHHH--------------HTTTTTCCSSCEEEEEEBGGGTBTHHHHHHH
T ss_pred hhhCCCeEEEEEECCCCCCCC-CHHHHHH--------------HhCcccccCCceEEEEccCCCCcCHHHHHHH
Confidence 556789999999999986521 0000111 1000 01114467889999999999999953
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-17 Score=136.59 Aligned_cols=123 Identities=14% Similarity=0.137 Sum_probs=87.1
Q ss_pred eccccee--EEEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIV--EVHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~--~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|.. ...+.+++ +.+.+||++|++.++..|..|+++++++|+|+|+++ ..++.+...|+..+.
T Consensus 59 ~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~----------~~s~~~~~~~~~~i~ 128 (201)
T 2hup_A 59 GSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITK----------RSSFLSVPHWIEDVR 128 (201)
T ss_dssp ------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTB----------HHHHHTHHHHHHHHH
T ss_pred CCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 5666643 34455544 789999999999999999999999999999999998 566777777777766
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~~ 237 (262)
... ..++|++||+||+|+..++... .+-+.+......+ .+++|||++|+||.++|+.
T Consensus 129 ~~~-~~~~piilv~NK~Dl~~~~~v~-----------------~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 186 (201)
T 2hup_A 129 KYA-GSNIVQLLIGNKSDLSELREVS-----------------LAEAQSLAEHYDILCAIETSAKDSSNVEEAFLR 186 (201)
T ss_dssp HHS-CTTCEEEEEEECTTCGGGCCSC-----------------HHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHH
T ss_pred Hhc-CCCCCEEEEEECCccccccccC-----------------HHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHH
Confidence 532 3579999999999997532100 1112222222456 7889999999999999963
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.70 E-value=6.2e-18 Score=149.60 Aligned_cols=125 Identities=15% Similarity=0.090 Sum_probs=85.8
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccch---hhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERK---KWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~---~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
..||+|+....+. ..+++++||||||+++++ .+.+||++++++|+|+|+++ . +.++..+|..++
T Consensus 31 ~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd----------~--~~~~~~~l~~~l 97 (331)
T 3r7w_B 31 LESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQD----------E--YINAITNLAMII 97 (331)
T ss_dssp CCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSS----------C--TTHHHHHHHHHH
T ss_pred ecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCc----------h--HHHHHHHHHHHH
Confidence 3689998877653 458999999999999975 46899999999999999997 2 455555555443
Q ss_pred hC--CCCCCCeEEEEeeCCchhhh--h-----hccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeee
Q psy6623 163 NN--KWFTDTSIILFLNKKDLFEE--K-----IKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILF 233 (262)
Q Consensus 163 ~~--~~~~~~piil~~NK~Dl~~~--k-----l~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~ 233 (262)
.. ....++|++|+|||+|+..+ | .......+-+.+... .+..+.+++|||+| .||.+
T Consensus 98 ~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~-------------~~~~i~f~eTSAkd-~nV~e 163 (331)
T 3r7w_B 98 EYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGL-------------DGVQVSFYLTSIFD-HSIYE 163 (331)
T ss_dssp HHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSC-------------SCCCEEEECCCSSS-SHHHH
T ss_pred HHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcc-------------cccCceEEEeccCC-CcHHH
Confidence 21 12357999999999999642 1 111111111221100 00357899999998 58999
Q ss_pred eehh
Q psy6623 234 LNKK 237 (262)
Q Consensus 234 ~f~~ 237 (262)
+|..
T Consensus 164 AFs~ 167 (331)
T 3r7w_B 164 AFSR 167 (331)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9974
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=4.1e-17 Score=131.69 Aligned_cols=123 Identities=11% Similarity=0.131 Sum_probs=77.4
Q ss_pred ecccceeE--EEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|... ..+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+.
T Consensus 38 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~ 107 (183)
T 2fu5_C 38 ISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITN----------EKSFDNIRNWIRNIE 107 (183)
T ss_dssp HHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTC----------HHHHHHHHHHHHHHH
T ss_pred CCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 67777543 3455544 789999999999999999999999999999999998 567777777777766
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.. ...++|++|++||+|+..++. +. ...+........+.+++|||++|.||.++|..
T Consensus 108 ~~-~~~~~piilv~nK~Dl~~~~~----v~-------------~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 164 (183)
T 2fu5_C 108 EH-ASADVEKMILGNKCDVNDKRQ----VS-------------KERGEKLALDYGIKFMETSAKANINVENAFFT 164 (183)
T ss_dssp HH-SCTTCEEEEEEEC--CCSCCC----SC-------------HHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred Hh-cCCCCCEEEEEECccCCccCc----CC-------------HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 53 234789999999999864321 00 11111112224577899999999999999964
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-16 Score=126.42 Aligned_cols=115 Identities=12% Similarity=0.104 Sum_probs=87.1
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.++.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....++..+.... ..++|++|++||+
T Consensus 53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~ 121 (170)
T 1r2q_A 53 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN----------EESFARAKNWVKELQRQA-SPNIVIALSGNKA 121 (170)
T ss_dssp EEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHS-CTTCEEEEEEECG
T ss_pred EEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhc-CCCCcEEEEEECc
Confidence 35789999999999999999999999999999999998 567777777777776532 3579999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
|+..++... ..-.........+.++++||++|.||+++|+ +|.+.+
T Consensus 122 Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~--~i~~~~ 167 (170)
T 1r2q_A 122 DLANKRAVD-----------------FQEAQSYADDNSLLFMETSAKTSMNVNEIFM--AIAKKL 167 (170)
T ss_dssp GGGGGCCSC-----------------HHHHHHHHHHTTCEEEECCTTTCTTHHHHHH--HHHHTS
T ss_pred cCccccccC-----------------HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH--HHHHHH
Confidence 996532100 1112222222557788999999999999995 455544
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.1e-17 Score=131.56 Aligned_cols=131 Identities=10% Similarity=0.097 Sum_probs=89.3
Q ss_pred ecccce--eEEEEeeec---cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHH
Q psy6623 87 VKTTGI--VEVHFSFKN---LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSI 161 (262)
Q Consensus 87 ~pT~Gi--~~~~~~~~~---~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i 161 (262)
.||+|. ....+.+.+ +.+++||++|++.++..|..|+++++++|+|+|+++ ..++.+...|+..+
T Consensus 36 ~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i 105 (178)
T 2hxs_A 36 KQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITN----------YQSFENLEDWYTVV 105 (178)
T ss_dssp HHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHH
T ss_pred CCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHH
Confidence 567773 445555544 789999999999999999999999999999999998 45555555555544
Q ss_pred HhCC-CCCCC-eEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhH
Q psy6623 162 CNNK-WFTDT-SIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 239 (262)
Q Consensus 162 ~~~~-~~~~~-piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~l 239 (262)
.... ...+. |++|++||+|+..++. +. .+..........+.++++||++|.||.++|+ +
T Consensus 106 ~~~~~~~~~~~~iilv~nK~Dl~~~~~----~~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~--~ 166 (178)
T 2hxs_A 106 KKVSEESETQPLVALVGNKIDLEHMRT----IK-------------PEKHLRFCQENGFSSHFVSAKTGDSVFLCFQ--K 166 (178)
T ss_dssp HHHHHHHTCCCEEEEEEECGGGGGGCS----SC-------------HHHHHHHHHHHTCEEEEECTTTCTTHHHHHH--H
T ss_pred HHHhcccCCCCeEEEEEEccccccccc----cC-------------HHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH--H
Confidence 4310 01134 4899999999975321 00 0111111122457789999999999999995 4
Q ss_pred HHhhccC
Q psy6623 240 FEEKIKK 246 (262)
Q Consensus 240 L~~~i~~ 246 (262)
|...+.+
T Consensus 167 l~~~~~~ 173 (178)
T 2hxs_A 167 VAAEILG 173 (178)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 5555443
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.5e-16 Score=124.82 Aligned_cols=131 Identities=14% Similarity=0.109 Sum_probs=92.7
Q ss_pred ecccceeE--EEEee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|... ..+.+ ..+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~ 102 (170)
T 1ek0_A 33 EPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTK----------PQSFIKARHWVKELH 102 (170)
T ss_dssp CCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHH
T ss_pred CCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCC----------hHHHHHHHHHHHHHH
Confidence 45555432 33333 34689999999999999999999999999999999998 567777777777776
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 242 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~ 242 (262)
... ..++|++|++||+|+..+.- ...+. ............+.++++||++|.||.++|+ +|.+
T Consensus 103 ~~~-~~~~piilv~nK~Dl~~~~~-~~~v~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~--~l~~ 165 (170)
T 1ek0_A 103 EQA-SKDIIIALVGNKIDXLQEGG-ERKVA-------------REEGEKLAEEKGLLFFETSAKTGENVNDVFL--GIGE 165 (170)
T ss_dssp HHS-CTTCEEEEEEECGGGGGSSC-CCCSC-------------HHHHHHHHHHHTCEEEECCTTTCTTHHHHHH--HHHT
T ss_pred Hhc-CCCCcEEEEEECCCcccccc-ccCCC-------------HHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH--HHHH
Confidence 542 35799999999999975310 01110 1122222222457789999999999999995 4544
Q ss_pred hc
Q psy6623 243 KI 244 (262)
Q Consensus 243 ~i 244 (262)
.+
T Consensus 166 ~i 167 (170)
T 1ek0_A 166 KI 167 (170)
T ss_dssp TS
T ss_pred HH
Confidence 43
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-16 Score=129.38 Aligned_cols=110 Identities=14% Similarity=0.188 Sum_probs=84.9
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+.......++|++|++||+|
T Consensus 69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 138 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTN----------EQSFLNVRNWISQLQMHAYSENPDIVLCGNKSD 138 (195)
T ss_dssp EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTT
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 4689999999999999999999999999999999998 567777777777777654446799999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+..++... ...+........+.++++||++|.||+++|+.
T Consensus 139 l~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 178 (195)
T 3bc1_A 139 LEDQRAVK-----------------EEEARELAEKYGIPYFETSAANGTNISHAIEM 178 (195)
T ss_dssp CGGGCCSC-----------------HHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred cccccccC-----------------HHHHHHHHHHcCCCEEEEECCCCCCHHHHHHH
Confidence 96532100 11122212224567899999999999999964
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.5e-18 Score=140.01 Aligned_cols=111 Identities=10% Similarity=0.044 Sum_probs=74.0
Q ss_pred ecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHH---HHHHhCCC-CCCCeEEEEeeCC-chh
Q psy6623 108 DVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLF---DSICNNKW-FTDTSIILFLNKK-DLF 182 (262)
Q Consensus 108 D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~---~~i~~~~~-~~~~piil~~NK~-Dl~ 182 (262)
++|||++.|..|.+||++++|+|||||++| ..++. +.+.+ ..+++... +.++|++|++||+ |++
T Consensus 108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD----------~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp 176 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEA----------HKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 176 (227)
T ss_dssp ---------CCHHHHHHHCSEEEEEEECBT----------TCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS
T ss_pred ccCcHHHHHHHHHHHhcCCCEEEEEecccc----------HhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc
Confidence 678999999999999999999999999998 44543 66666 55565543 5899999999995 775
Q ss_pred hhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhccC
Q psy6623 183 EEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKK 246 (262)
Q Consensus 183 ~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~~ 246 (262)
. .+...++.+.+ | +... .|.|+++.|||++|+|+.+++ +||.+.+.+
T Consensus 177 ~-Ams~~EI~e~L----~---------L~~l-~R~W~Iq~csA~TGeGL~EGL--dWL~~~l~~ 223 (227)
T 3l82_B 177 K-RMPCFYLAHEL----H---------LNLL-NHPWLVQDTEAETLTGFLNGI--EWILEEVES 223 (227)
T ss_dssp C-BCCHHHHHHHT----T---------GGGG-CSCEEEEEEETTTCTTHHHHH--HHHTTTTTT
T ss_pred C-CCCHHHHHHHc----C---------CcCC-CCCEEEEEeECCCCcCHHHHH--HHHHHHHHh
Confidence 4 22222221100 0 0111 378999999999999999999 799887654
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.66 E-value=3.3e-16 Score=127.87 Aligned_cols=129 Identities=13% Similarity=0.081 Sum_probs=92.4
Q ss_pred ecccceeEEE--Eee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEVH--FSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~~--~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|..... +.+ ....+.+||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+.
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~----------~~s~~~~~~~~~~i~ 122 (192)
T 2fg5_A 53 SPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITK----------QDSFYTLKKWVKELK 122 (192)
T ss_dssp CCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTC----------THHHHHHHHHHHHHH
T ss_pred CCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCC----------HHHHHHHHHHHHHHH
Confidence 4555644322 222 45789999999999999999999999999999999998 566777666766665
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 242 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~ 242 (262)
.. ...++|++|++||+|+..++. +. .+.+.+......+.++++||++|.||+++|+ +|.+
T Consensus 123 ~~-~~~~~piiiv~NK~Dl~~~~~----v~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~--~l~~ 182 (192)
T 2fg5_A 123 EH-GPENIVMAIAGNKCDLSDIRE----VP-------------LKDAKEYAESIGAIVVETSAKNAINIEELFQ--GISR 182 (192)
T ss_dssp HH-SCTTCEEEEEEECGGGGGGCC----SC-------------HHHHHHHHHTTTCEEEECBTTTTBSHHHHHH--HHHH
T ss_pred Hh-CCCCCcEEEEEECcccccccc----cC-------------HHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH--HHHH
Confidence 43 235789999999999965321 00 1122222223457789999999999999995 4555
Q ss_pred hcc
Q psy6623 243 KIK 245 (262)
Q Consensus 243 ~i~ 245 (262)
.+.
T Consensus 183 ~i~ 185 (192)
T 2fg5_A 183 QIP 185 (192)
T ss_dssp TCC
T ss_pred HHH
Confidence 544
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.4e-16 Score=126.62 Aligned_cols=130 Identities=12% Similarity=0.140 Sum_probs=93.1
Q ss_pred ecccceeE--EEEee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.+|+|... ..+.+ ..+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....++..+.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~ 111 (181)
T 2efe_B 42 ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTN----------QASFERAKKWVQELQ 111 (181)
T ss_dssp CCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHH
T ss_pred CCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 45555432 33333 35789999999999999999999999999999999998 567777777777776
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 242 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~ 242 (262)
... ..++|++|++||+|+..++. +. ...+.+......+.++++||++|.||+++|. +|..
T Consensus 112 ~~~-~~~~p~i~v~nK~Dl~~~~~----~~-------------~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~--~l~~ 171 (181)
T 2efe_B 112 AQG-NPNMVMALAGNKSDLLDARK----VT-------------AEDAQTYAQENGLFFMETSAKTATNVKEIFY--EIAR 171 (181)
T ss_dssp HHS-CTTCEEEEEEECTTCTTTCC----SC-------------HHHHHHHHHHTTCEEEECCSSSCTTHHHHHH--HHHH
T ss_pred Hhc-CCCCcEEEEEECCccccccc----CC-------------HHHHHHHHHHcCCEEEEEECCCCCCHHHHHH--HHHH
Confidence 542 35799999999999864321 00 1112222222557789999999999999995 4555
Q ss_pred hccC
Q psy6623 243 KIKK 246 (262)
Q Consensus 243 ~i~~ 246 (262)
.+.+
T Consensus 172 ~~~~ 175 (181)
T 2efe_B 172 RLPR 175 (181)
T ss_dssp TCC-
T ss_pred HHHh
Confidence 5443
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-16 Score=129.53 Aligned_cols=128 Identities=14% Similarity=0.098 Sum_probs=92.4
Q ss_pred ecccceeE--EEEee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|... ..+.+ ..+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.
T Consensus 45 ~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~ 114 (195)
T 1x3s_A 45 AATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTR----------RDTFVKLDNWLNELE 114 (195)
T ss_dssp CCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHT
T ss_pred CCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 45555433 23333 35789999999999999999999999999999999998 566777777777776
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 242 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~ 242 (262)
......++|++|++||+|+.... +. ............+.++++||++|.||+++|+ +|..
T Consensus 115 ~~~~~~~~p~ilv~nK~Dl~~~~-----~~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~--~l~~ 174 (195)
T 1x3s_A 115 TYCTRNDIVNMLVGNKIDKENRE-----VD-------------RNEGLKFARKHSMLFIEASAKTCDGVQCAFE--ELVE 174 (195)
T ss_dssp TCCSCSCCEEEEEEECTTSSSCC-----SC-------------HHHHHHHHHHTTCEEEECCTTTCTTHHHHHH--HHHH
T ss_pred HhcCcCCCcEEEEEECCcCcccc-----cC-------------HHHHHHHHHHcCCEEEEecCCCCCCHHHHHH--HHHH
Confidence 65444679999999999984311 00 1112222222457789999999999999995 3444
Q ss_pred hc
Q psy6623 243 KI 244 (262)
Q Consensus 243 ~i 244 (262)
.+
T Consensus 175 ~~ 176 (195)
T 1x3s_A 175 KI 176 (195)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-16 Score=127.93 Aligned_cols=128 Identities=14% Similarity=0.193 Sum_probs=81.7
Q ss_pred ecccceeEEE--Eeee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEVH--FSFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~~--~~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|..... +.++ .+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.
T Consensus 41 ~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~ 110 (180)
T 2g6b_A 41 ISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTN----------KASFDNIQAWLTEIH 110 (180)
T ss_dssp CCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 4566655432 2333 3689999999999999999999999999999999998 455555556665555
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 242 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~ 242 (262)
... ..++|++|++||+|+..++. +. ............+.++++||++|.||+++|+ +|..
T Consensus 111 ~~~-~~~~piilv~nK~Dl~~~~~----~~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~--~l~~ 170 (180)
T 2g6b_A 111 EYA-QHDVALMLLGNKVDSAHERV----VK-------------REDGEKLAKEYGLPFMETSAKTGLNVDLAFT--AIAK 170 (180)
T ss_dssp HHS-CTTCEEEEEEECCSTTSCCC----SC-------------HHHHHHHHHHHTCCEEECCTTTCTTHHHHHH--HHHH
T ss_pred HhC-CCCCcEEEEEECcccCcccc----cC-------------HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH--HHHH
Confidence 432 25789999999999975321 00 1111111222456789999999999999995 3444
Q ss_pred hc
Q psy6623 243 KI 244 (262)
Q Consensus 243 ~i 244 (262)
.+
T Consensus 171 ~~ 172 (180)
T 2g6b_A 171 EL 172 (180)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.7e-16 Score=125.23 Aligned_cols=122 Identities=14% Similarity=0.137 Sum_probs=90.2
Q ss_pred eccccee--EEEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIV--EVHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~--~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|.. ...+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~ 108 (181)
T 3tw8_B 39 ITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTS----------AESFVNVKRWLHEIN 108 (181)
T ss_dssp TTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTC----------HHHHHHHHHHHHHHH
T ss_pred CCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 4555543 34445554 789999999999999999999999999999999998 667777777777766
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.. ..++|++||+||+|+..++... ............+.++++||++|.||.++|+.
T Consensus 109 ~~--~~~~p~ilv~nK~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 164 (181)
T 3tw8_B 109 QN--CDDVCRILVGNKNDDPERKVVE-----------------TEDAYKFAGQMGIQLFETSAKENVNVEEMFNC 164 (181)
T ss_dssp HH--CTTSEEEEEEECTTCGGGCCSC-----------------HHHHHHHHHHHTCCEEECBTTTTBSHHHHHHH
T ss_pred Hh--CCCCCEEEEEECCCCchhcccC-----------------HHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 43 3579999999999987643111 11111111224467889999999999999964
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.6e-16 Score=126.75 Aligned_cols=110 Identities=13% Similarity=0.113 Sum_probs=83.3
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+.+||++|++.++..|..|+++++++|+|+|+++ ..++.....++..+.......++|++|++||+|
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 122 (181)
T 3t5g_A 53 EYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTS----------IKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD 122 (181)
T ss_dssp EEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHC----CCEEEEEECTT
T ss_pred EEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 3778999999999999999999999999999999998 677888888887777654445799999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+..++... ..-+........+.++++||++|.||.++|..
T Consensus 123 l~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 162 (181)
T 3t5g_A 123 LHMERVIS-----------------YEEGKALAESWNAAFLESSAKENQTAVDVFRR 162 (181)
T ss_dssp CTTTCCSC-----------------HHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred chhcceec-----------------HHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence 86432110 11122222224567899999999999999963
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-16 Score=141.25 Aligned_cols=121 Identities=22% Similarity=0.361 Sum_probs=95.8
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|+....+..+++.+++|||+|++.++.+|..++++++++|+|+|+++ ..++.....++..++....
T Consensus 194 ~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~----------~~s~~~~~~~~~~~~~~~~ 263 (329)
T 3o47_A 194 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RERVNEAREELMRMLAEDE 263 (329)
T ss_dssp EEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTC----------SSSHHHHHHHHHHHHTCGG
T ss_pred ccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCc----------hHHHHHHHHHHHHHHhhhc
Confidence 589999988888899999999999999999999999999999999999998 7889999999999987766
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHh-----hhccceeecccccccceeeeeeh
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESL-----KLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f-----~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
..++|++||+||+|+....- ..-+...+ ..+.+.+++|||++|.||+++|+
T Consensus 264 ~~~~piilV~NK~Dl~~~~~-------------------~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~ 319 (329)
T 3o47_A 264 LRDAVLLVFANKQDLPNAMN-------------------AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLD 319 (329)
T ss_dssp GTTCEEEEEEECTTSTTCCC-------------------HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHH
T ss_pred cCCCeEEEEEECccCCcccC-------------------HHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHH
Confidence 67899999999999865210 01111111 11456789999999999999996
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-16 Score=125.92 Aligned_cols=115 Identities=12% Similarity=0.086 Sum_probs=85.2
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
+.+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+.......+.|++|++||+
T Consensus 49 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 118 (167)
T 1c1y_A 49 QQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITA----------QSTFNDLQDLREQILRVKDTEDVPMILVGNKC 118 (167)
T ss_dssp CEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHHCCSCCCEEEEEECT
T ss_pred EEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhhCcCCCcEEEEEECc
Confidence 35679999999999999999999999999999999998 56666666677666654334579999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehhhHHHhh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKKDLFEEK 243 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~~lL~~~ 243 (262)
|+..++... .+.+...... ..+.++++||++|.||+++|+ +|.+.
T Consensus 119 Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~--~l~~~ 164 (167)
T 1c1y_A 119 DLEDERVVG-----------------KEQGQNLARQWCNCAFLESSAKSKINVNEIFY--DLVRQ 164 (167)
T ss_dssp TCGGGCCSC-----------------HHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH--HHHHH
T ss_pred cccccccCC-----------------HHHHHHHHHHccCCcEEEecCCCCCCHHHHHH--HHHHH
Confidence 997532110 1111111111 246788999999999999995 44443
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.65 E-value=4.1e-16 Score=128.11 Aligned_cols=123 Identities=14% Similarity=0.144 Sum_probs=88.6
Q ss_pred ecccceeEE--EEee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEV--HFSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~--~~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.+|+|.... .+.+ ..+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+.
T Consensus 38 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~ 107 (203)
T 1zbd_A 38 VSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITN----------EESFNAVQDWSTQIK 107 (203)
T ss_dssp CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTC----------HHHHHHHHHHHHHHH
T ss_pred CCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 456664433 2333 35789999999999999999999999999999999998 566776667776665
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.. ...++|++|++||+|+..++... ...+........+.++++||++|.||.++|+.
T Consensus 108 ~~-~~~~~piilv~nK~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 164 (203)
T 1zbd_A 108 TY-SWDNAQVLLVGNKCDMEDERVVS-----------------SERGRQLADHLGFEFFEASAKDNINVKQTFER 164 (203)
T ss_dssp HH-SCSSCEEEEEEECTTCTTSCCSC-----------------HHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred Hh-cCCCCCEEEEEECcccCcccccC-----------------HHHHHHHHHHCCCeEEEEECCCCCCHHHHHHH
Confidence 43 23578999999999986532100 11111111123467889999999999999974
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=9.9e-17 Score=133.27 Aligned_cols=110 Identities=14% Similarity=0.202 Sum_probs=84.3
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.......++|++||+||+|
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~----------~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~D 152 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTS----------QQSFLNVRNWMSQLQANAYCENPDIVLIGNKAD 152 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTC----------HHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTT
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCc
Confidence 5789999999999999999999999999999999998 667777777777666544346899999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+..++. +. ...+........+.+++|||++|.||.++|+.
T Consensus 153 l~~~~~----v~-------------~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 192 (217)
T 2f7s_A 153 LPDQRE----VN-------------ERQARELADKYGIPYFETSAATGQNVEKAVET 192 (217)
T ss_dssp CGGGCC----SC-------------HHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHH
T ss_pred cccccc----cC-------------HHHHHHHHHHCCCcEEEEECCCCCCHHHHHHH
Confidence 965321 10 11111111224567889999999999999964
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-16 Score=125.28 Aligned_cols=109 Identities=11% Similarity=0.121 Sum_probs=82.1
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+.+||++|++.++..|..|+++++++|+|+|+++ ..++.....++..+.......+.|++|++||+|
T Consensus 51 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 120 (168)
T 1u8z_A 51 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITE----------MESFAATADFREQILRVKEDENVPFLLVGNKSD 120 (168)
T ss_dssp EEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGG
T ss_pred EEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcc
Confidence 4689999999999999999999999999999999998 667777777777777654445799999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+..++- .. ..-+........+.++++||++|.||.++|+
T Consensus 121 l~~~~~----~~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (168)
T 1u8z_A 121 LEDKRQ----VS-------------VEEAKNRADQWNVNYVETSAKTRANVDKVFF 159 (168)
T ss_dssp GGGGCC----SC-------------HHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred ccccCc----cC-------------HHHHHHHHHHcCCeEEEeCCCCCCCHHHHHH
Confidence 975321 10 1122222223456789999999999999995
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.5e-16 Score=127.72 Aligned_cols=112 Identities=11% Similarity=0.179 Sum_probs=80.4
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
..+.+++||++|++.++..|..++++++++|+|+|+++ ..++.+....|...+.. ...++|++||+||+
T Consensus 69 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~ 137 (194)
T 3reg_A 69 EEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNN----------RTSFDNISTKWEPEIKH-YIDTAKTVLVGLKV 137 (194)
T ss_dssp EEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHH-HCTTSEEEEEEECG
T ss_pred EEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHH-hCCCCCEEEEEECh
Confidence 34678999999999999999999999999999999998 66777753434333332 23579999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccce-eecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSI-CNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~-~~~tsA~d~~~I~~~f~~ 237 (262)
|+..+.-.. . . ...+........+. +++|||++|.||.++|+.
T Consensus 138 Dl~~~~~~~--~-----------~--~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 181 (194)
T 3reg_A 138 DLRKDGSDD--V-----------T--KQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEK 181 (194)
T ss_dssp GGCCTTTTC--C-----------C--HHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHH
T ss_pred hhccCCCCc--c-----------c--HHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHH
Confidence 997531000 0 0 11222222223455 889999999999999963
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-16 Score=127.42 Aligned_cols=110 Identities=15% Similarity=0.090 Sum_probs=85.0
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....++..++......++|++|++||+|
T Consensus 56 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D 125 (181)
T 2fn4_A 56 PARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAIND----------RQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 125 (181)
T ss_dssp EEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGG
T ss_pred EEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 3678999999999999999999999999999999998 667777778887776544456799999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+..++. +. ............+.++++||++|.||.++|+.
T Consensus 126 l~~~~~----v~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 165 (181)
T 2fn4_A 126 LESQRQ----VP-------------RSEASAFGASHHVAYFEASAKLRLNVDEAFEQ 165 (181)
T ss_dssp GGGGCC----SC-------------HHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred cccccc----cC-------------HHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 975321 10 11111111224567899999999999999963
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-16 Score=130.39 Aligned_cols=111 Identities=14% Similarity=0.123 Sum_probs=83.9
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
..+.+.+||++|++.++..|..|+++++++|+|+|+++ ..++.....++..+.......++|++||+||+
T Consensus 70 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 139 (201)
T 3oes_A 70 DEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTS----------LHSFQVIESLYQKLHEGHGKTRVPVVLVGNKA 139 (201)
T ss_dssp -CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTC----------HHHHHHHHHHHHHHHC-----CCCEEEEEECT
T ss_pred EEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 45788999999999999999999999999999999998 67788888888888765555679999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+..++... ............+.++++||++|.||.++|+.
T Consensus 140 Dl~~~~~v~-----------------~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 180 (201)
T 3oes_A 140 DLSPEREVQ-----------------AVEGKKLAESWGATFMESSARENQLTQGIFTK 180 (201)
T ss_dssp TCGGGCCSC-----------------HHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred cCccccccC-----------------HHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence 987532110 01111111224567889999999999999964
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-16 Score=129.57 Aligned_cols=124 Identities=13% Similarity=0.064 Sum_probs=78.7
Q ss_pred ecccc--eeEEEEeee----ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHH
Q psy6623 87 VKTTG--IVEVHFSFK----NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDS 160 (262)
Q Consensus 87 ~pT~G--i~~~~~~~~----~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~ 160 (262)
.||+| +....+.++ .+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....|+..
T Consensus 52 ~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~ 121 (208)
T 2yc2_C 52 AMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSS----------MESFESCKAWFEL 121 (208)
T ss_dssp ---------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTC----------HHHHHHHHHHHHH
T ss_pred CCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCC----------HHHHHHHHHHHHH
Confidence 46666 333445554 5689999999999999999999999999999999998 6677777777777
Q ss_pred HHhCCC--CCCCeEEEEeeCCchhh-hhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccc-cceeeeeeh
Q psy6623 161 ICNNKW--FTDTSIILFLNKKDLFE-EKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTD-TSIILFLNK 236 (262)
Q Consensus 161 i~~~~~--~~~~piil~~NK~Dl~~-~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d-~~~I~~~f~ 236 (262)
+..... ..++|++||+||+|+.. ++. +. .+.+.+......+.++++||++ |.||.++|+
T Consensus 122 i~~~~~~~~~~~piilv~nK~Dl~~~~~~----v~-------------~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~ 184 (208)
T 2yc2_C 122 LKSARPDRERPLRAVLVANKTDLPPQRHQ----VR-------------LDMAQDWATTNTLDFFDVSANPPGKDADAPFL 184 (208)
T ss_dssp HHHHCSCTTSCCEEEEEEECC-------C----CC-------------HHHHHHHHHHTTCEEEECCC-------CHHHH
T ss_pred HHHhhcccccCCcEEEEEECcccchhhcc----CC-------------HHHHHHHHHHcCCEEEEeccCCCCcCHHHHHH
Confidence 765432 25799999999999975 221 00 1112222222457889999999 999999996
Q ss_pred h
Q psy6623 237 K 237 (262)
Q Consensus 237 ~ 237 (262)
.
T Consensus 185 ~ 185 (208)
T 2yc2_C 185 S 185 (208)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.9e-16 Score=129.11 Aligned_cols=123 Identities=13% Similarity=0.130 Sum_probs=87.7
Q ss_pred eccccee--EEEEeee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIV--EVHFSFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~--~~~~~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.+|+|.. ...+.++ .+.+++||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.
T Consensus 51 ~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~l~~i~ 120 (191)
T 2a5j_A 51 DLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLTSWLEDAR 120 (191)
T ss_dssp ---CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 4555643 3344443 3789999999999999999999999999999999998 566666667776665
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
... ..++|++|++||+|+..++... ............+.++++||++|+||+++|+.
T Consensus 121 ~~~-~~~~piilv~nK~Dl~~~~~v~-----------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 177 (191)
T 2a5j_A 121 QHS-SSNMVIMLIGNKSDLESRRDVK-----------------REEGEAFAREHGLIFMETSAKTACNVEEAFIN 177 (191)
T ss_dssp HHS-CTTCEEEEEEECTTCGGGCCSC-----------------HHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred Hhc-CCCCCEEEEEECcccCCccccC-----------------HHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 432 3579999999999996532100 11111111224567889999999999999964
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-16 Score=132.15 Aligned_cols=121 Identities=17% Similarity=0.198 Sum_probs=82.0
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHH-HHHHHHHHhCCCCCCCeEEEEeeC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQES-LKLFDSICNNKWFTDTSIILFLNK 178 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~-~~~~~~i~~~~~~~~~piil~~NK 178 (262)
..+.+.+||++|++.++.+|..|+++++++|+|+|+++ ..++.++ ..|+..+... ..++|++||+||
T Consensus 73 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~i~~~--~~~~piilv~nK 140 (214)
T 3q3j_B 73 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISR----------PETVDSALKKWRTEILDY--CPSTRVLLIGCK 140 (214)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC----------THHHHHHHTHHHHHHHHH--CTTSEEEEEEEC
T ss_pred EEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEEC
Confidence 44789999999999999999999999999999999998 6777774 4444444432 257999999999
Q ss_pred CchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccce-eeeeehh
Q psy6623 179 KDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSI-ILFLNKK 237 (262)
Q Consensus 179 ~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~-I~~~f~~ 237 (262)
+|+..+......+.. . ........-.........+ .+++|||++|.| |.++|+.
T Consensus 141 ~Dl~~~~~~~~~~~~----~-~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~ 196 (214)
T 3q3j_B 141 TDLRTDLSTLMELSH----Q-KQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRT 196 (214)
T ss_dssp GGGGGCHHHHHHHHH----T-TCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHH
T ss_pred hhhccchhhhhhhcc----c-ccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHH
Confidence 999753110000000 0 0000001112222222456 788999999998 9999964
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.9e-16 Score=131.46 Aligned_cols=123 Identities=11% Similarity=0.127 Sum_probs=84.9
Q ss_pred eccccee--EEEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIV--EVHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~--~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|.. ...+.+++ +.+.+||++|++.++.+|..++++++++|+|+|+++ ..++.+...|+..+.
T Consensus 43 ~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~----------~~s~~~~~~~l~~i~ 112 (223)
T 3cpj_B 43 KSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISK----------SSSYENCNHWLSELR 112 (223)
T ss_dssp ----CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CC----------HHHHHHHHHHHHHHH
T ss_pred CCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCC----------HHHHHHHHHHHHHHH
Confidence 4566643 33455544 789999999999999999999999999999999998 567777777777765
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
... ..++|++||+||+|+..++. +. ............+.++++||++|.||+++|+.
T Consensus 113 ~~~-~~~~piilv~nK~Dl~~~~~----v~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 169 (223)
T 3cpj_B 113 ENA-DDNVAVGLIGNKSDLAHLRA----VP-------------TEESKTFAQENQLLFTETSALNSENVDKAFEE 169 (223)
T ss_dssp HHC-C--CEEEEEECCGGGGGGCC----SC-------------HHHHHHHHHHTTCEEEECCCC-CCCHHHHHHH
T ss_pred HhC-CCCCeEEEEEECcccccccc----cC-------------HHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 432 35789999999999975321 10 11111111224577889999999999999964
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.9e-16 Score=126.91 Aligned_cols=123 Identities=14% Similarity=0.132 Sum_probs=87.6
Q ss_pred ecccceeEE--EEee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEV--HFSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~--~~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.+|+|.... .+.. +.+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+.
T Consensus 52 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~ 121 (189)
T 2gf9_A 52 VSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIAN----------QESFAAVQDWATQIK 121 (189)
T ss_dssp CCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 455554432 2333 35789999999999999999999999999999999998 556666666666665
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.. ...+.|++||+||+|+..++... ...+........+.++++||++|.||+++|+.
T Consensus 122 ~~-~~~~~piilv~nK~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 178 (189)
T 2gf9_A 122 TY-SWDNAQVILVGNKCDLEDERVVP-----------------AEDGRRLADDLGFEFFEASAKENINVKQVFER 178 (189)
T ss_dssp HH-SCTTCEEEEEEECTTCGGGCCSC-----------------HHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred Hh-cCCCCCEEEEEECcccccccCCC-----------------HHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 43 23578999999999996532110 11111111223467899999999999999963
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.65 E-value=3.5e-16 Score=129.37 Aligned_cols=123 Identities=15% Similarity=0.140 Sum_probs=87.4
Q ss_pred ecccceeE--EEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|... ..+.+++ +.+++||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+.
T Consensus 56 ~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~----------~~s~~~~~~~~~~i~ 125 (201)
T 2ew1_A 56 GATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITC----------EESFRCLPEWLREIE 125 (201)
T ss_dssp CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 45666443 3344443 689999999999999999999999999999999998 556655556665554
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
... ..++|++||+||+|+..++- +. ..-.........+.+++|||++|.||.++|..
T Consensus 126 ~~~-~~~~piilv~NK~Dl~~~~~----v~-------------~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 182 (201)
T 2ew1_A 126 QYA-SNKVITVLVGNKIDLAERRE----VS-------------QQRAEEFSEAQDMYYLETSAKESDNVEKLFLD 182 (201)
T ss_dssp HHS-CTTCEEEEEEECGGGGGGCS----SC-------------HHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred Hhc-CCCCCEEEEEECCCCccccc----cC-------------HHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 322 24789999999999965321 10 01111111224577889999999999999964
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-16 Score=128.61 Aligned_cols=123 Identities=17% Similarity=0.164 Sum_probs=89.0
Q ss_pred eccccee--EEEEeee--ccceeeeecCCccccc-hhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHH
Q psy6623 87 VKTTGIV--EVHFSFK--NLNFKLFDVGGQRSER-KKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSI 161 (262)
Q Consensus 87 ~pT~Gi~--~~~~~~~--~~~~~i~D~~Gq~~~r-~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i 161 (262)
.+|+|.. ...+.++ .+.+.+||++|++.++ .+|..|+++++++|+|+|+++ ..++.....|+..+
T Consensus 50 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~----------~~s~~~~~~~~~~i 119 (189)
T 1z06_A 50 EATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTN----------MASFHSLPAWIEEC 119 (189)
T ss_dssp CCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHH
T ss_pred CCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHH
Confidence 4555643 3344444 3789999999999998 899999999999999999998 56666666777777
Q ss_pred HhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeeccccccc---ceeeeeeh
Q psy6623 162 CNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDT---SIILFLNK 236 (262)
Q Consensus 162 ~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~---~~I~~~f~ 236 (262)
.......++|++|++||+|+..++- +. ............+.++++||+++ +||.++|.
T Consensus 120 ~~~~~~~~~piilv~nK~Dl~~~~~----v~-------------~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~ 180 (189)
T 1z06_A 120 KQHLLANDIPRILVGNKCDLRSAIQ----VP-------------TDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFM 180 (189)
T ss_dssp HHHCCCSCCCEEEEEECTTCGGGCC----SC-------------HHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHH
T ss_pred HHhcCCCCCCEEEEEECccccccce----eC-------------HHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHH
Confidence 6544345799999999999965321 10 11111111224567889999999 99999995
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.4e-16 Score=127.36 Aligned_cols=123 Identities=12% Similarity=0.067 Sum_probs=88.0
Q ss_pred eccccee--EEEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIV--EVHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~--~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|.. ...+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~ 109 (186)
T 2bme_A 40 NHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS----------RETYNALTNWLTDAR 109 (186)
T ss_dssp CCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 3455533 23344443 789999999999999999999999999999999998 566666666666655
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
... ..++|++|++||+|+..++. .. ..-.........+.++++||++|+||.++|+.
T Consensus 110 ~~~-~~~~piilv~nK~Dl~~~~~----~~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 166 (186)
T 2bme_A 110 MLA-SQNIVIILCGNKKDLDADRE----VT-------------FLEASRFAQENELMFLETSALTGENVEEAFVQ 166 (186)
T ss_dssp HHS-CTTCEEEEEEECGGGGGGCC----SC-------------HHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred Hhc-CCCCcEEEEEECcccccccc----cC-------------HHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 432 25789999999999965321 10 11111222225577899999999999999964
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.7e-16 Score=126.75 Aligned_cols=123 Identities=9% Similarity=0.102 Sum_probs=90.0
Q ss_pred ecccceeEE--EEee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEV--HFSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~--~~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.+|+|.... .+.+ ..+.+.+||++|++.++.+|..++++++++|+|+|+++ ..++.....|+..+.
T Consensus 55 ~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~----------~~s~~~~~~~l~~i~ 124 (193)
T 2oil_A 55 RTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTK----------HQTYAVVERWLKELY 124 (193)
T ss_dssp CCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 456665433 2333 45789999999999999999999999999999999998 566666677777776
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
... ..+.|++|++||+|+..++. .. ...+........+.++++||++|.||+++|..
T Consensus 125 ~~~-~~~~piilv~nK~Dl~~~~~----~~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 181 (193)
T 2oil_A 125 DHA-EATIVVMLVGNKSDLSQARE----VP-------------TEEARMFAENNGLLFLETSALDSTNVELAFET 181 (193)
T ss_dssp TTS-CTTCEEEEEEECGGGGGGCC----SC-------------HHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred Hhc-CCCCeEEEEEECCCcccccc----cC-------------HHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 532 35789999999999975321 00 11112222224577889999999999999964
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.4e-16 Score=123.98 Aligned_cols=111 Identities=16% Similarity=0.167 Sum_probs=71.0
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
..+.+.+||++|++.++..|..|+++++++|+|+|+++ ..++.....++..+.......++|++|++||+
T Consensus 47 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 116 (166)
T 3q72_A 47 EEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTD----------KGSFEKASELRVQLRRARQTDDVPIILVGNKS 116 (166)
T ss_dssp EEEEEEEEECC---------------CCEEEEEEETTC----------HHHHHHHHHHHHHHHHCC---CCCEEEEEECT
T ss_pred EEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEecc
Confidence 45788999999999999999999999999999999998 67888888888888876555789999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+..++. +. ............+.+++|||++|+||+++|+.
T Consensus 117 Dl~~~~~----~~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 157 (166)
T 3q72_A 117 DLVRSRE----VS-------------VDEGRACAVVFDCKFIETSAALHHNVQALFEG 157 (166)
T ss_dssp TCCSSCC----SC-------------HHHHHHHHHHTTCEEEECBGGGTBSHHHHHHH
T ss_pred ccccccc----cC-------------HHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Confidence 9864321 10 11111112224567899999999999999963
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-16 Score=131.35 Aligned_cols=128 Identities=13% Similarity=0.141 Sum_probs=84.6
Q ss_pred ecccce--eEEEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGI--VEVHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi--~~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.+|+|. ....+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~ 132 (199)
T 3l0i_B 63 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD----------QESFNNVKQWLQEID 132 (199)
T ss_dssp HHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCC----------SHHHHHHHHHHHHHH
T ss_pred CCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 566664 344455544 789999999999999999999999999999999998 677777777777765
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 242 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~ 242 (262)
.. ...++|++|++||+|+..++....... ..+.. ...+.++++||++|.||.++|+ +|.+
T Consensus 133 ~~-~~~~~p~ilv~nK~Dl~~~~~v~~~~~-------------~~~~~----~~~~~~~~vSA~~g~gv~~l~~--~l~~ 192 (199)
T 3l0i_B 133 RY-ASENVNKLLVGNKCDLTTKKVVDYTTA-------------KEFAD----SLGIPFLETSAKNATNVEQSFM--TMAA 192 (199)
T ss_dssp SC-C-CCSEEEEC-CCSSCC--CCCCSCC--------------CHHHH----TTTCCBCCCCC---HHHHHHHH--HHTT
T ss_pred Hh-ccCCCCEEEEEECccCCccccCCHHHH-------------HHHHH----HcCCeEEEEECCCCCCHHHHHH--HHHH
Confidence 43 335799999999999975432221111 11111 1346688999999999999995 4444
Q ss_pred hc
Q psy6623 243 KI 244 (262)
Q Consensus 243 ~i 244 (262)
.+
T Consensus 193 ~l 194 (199)
T 3l0i_B 193 EI 194 (199)
T ss_dssp TT
T ss_pred HH
Confidence 43
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-16 Score=130.63 Aligned_cols=123 Identities=15% Similarity=0.139 Sum_probs=88.7
Q ss_pred ecccceeEE--EEee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEV--HFSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~--~~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.+|+|.... .+.+ ..+.+.+||++|++.++.+|..++++++++|+|+|+++ ..++.....|+..+.
T Consensus 53 ~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~ 122 (191)
T 3dz8_A 53 VSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN----------EESFNAVQDWATQIK 122 (191)
T ss_dssp EEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 566664433 3333 45789999999999999999999999999999999998 566666666666555
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.. ...++|++|++||+|+..++... ............+.++++||++|.||.++|+.
T Consensus 123 ~~-~~~~~piilv~nK~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 179 (191)
T 3dz8_A 123 TY-SWDNAQVILVGNKCDMEEERVVP-----------------TEKGQLLAEQLGFDFFEASAKENISVRQAFER 179 (191)
T ss_dssp HH-SCTTCEEEEEEECTTCGGGCCSC-----------------HHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred Hh-cCCCCCEEEEEECCCCccccccC-----------------HHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 42 23579999999999996542111 11111112224567899999999999999964
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5e-16 Score=124.23 Aligned_cols=128 Identities=18% Similarity=0.223 Sum_probs=90.6
Q ss_pred ecccceeE--EEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|... ..+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....++..+.
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~ 113 (179)
T 2y8e_A 44 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN----------TNSFHQTSKWIDDVR 113 (179)
T ss_dssp CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 45566433 3344433 689999999999999999999999999999999997 556666666666665
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 242 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~ 242 (262)
... ..++|++|++||+|+..++. +. ............+.++++||++|.||+++|+ +|..
T Consensus 114 ~~~-~~~~piilv~nK~Dl~~~~~----~~-------------~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~--~l~~ 173 (179)
T 2y8e_A 114 TER-GSDVIIMLVGNKTDLSDKRQ----VS-------------TEEGERKAKELNVMFIETSAKAGYNVKQLFR--RVAA 173 (179)
T ss_dssp HHH-TTSSEEEEEEECGGGGGGCC----SC-------------HHHHHHHHHHHTCEEEEEBTTTTBSHHHHHH--HHHH
T ss_pred Hhc-CCCCcEEEEEECCcccccCc----CC-------------HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH--HHHH
Confidence 432 25789999999999975321 10 1111222222457789999999999999995 4544
Q ss_pred hc
Q psy6623 243 KI 244 (262)
Q Consensus 243 ~i 244 (262)
.+
T Consensus 174 ~~ 175 (179)
T 2y8e_A 174 AL 175 (179)
T ss_dssp TC
T ss_pred HH
Confidence 43
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-16 Score=127.55 Aligned_cols=110 Identities=12% Similarity=0.060 Sum_probs=83.4
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+++||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+.......++|++|++||+|
T Consensus 65 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 134 (183)
T 3kkq_A 65 WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTD----------KASFEHVDRFHQLILRVKDRESFPMILVANKVD 134 (183)
T ss_dssp EEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTT
T ss_pred EEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCC
Confidence 4567889999999999999999999999999999998 566776777777766544446789999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeeccccc-ccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFT-DTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~-d~~~I~~~f~~ 237 (262)
+..++... ...+........+.+++|||+ +|.||+++|+.
T Consensus 135 l~~~~~v~-----------------~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~ 175 (183)
T 3kkq_A 135 LMHLRKVT-----------------RDQGKEMATKYNIPYIETSAKDPPLNVDKTFHD 175 (183)
T ss_dssp CSTTCCSC-----------------HHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHH
T ss_pred chhccCcC-----------------HHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHH
Confidence 86532110 111222222234778999999 99999999963
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=4.2e-16 Score=124.66 Aligned_cols=109 Identities=13% Similarity=0.093 Sum_probs=81.4
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
..+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.... ..+.|++|++||+
T Consensus 62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~ 130 (179)
T 1z0f_A 62 QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR----------RSTYNHLSSWLTDARNLT-NPNTVIILIGNKA 130 (179)
T ss_dssp EEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHS-CTTCEEEEEEECT
T ss_pred eEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcC----------HHHHHHHHHHHHHHHHhc-CCCCcEEEEEECc
Confidence 34789999999999999999999999999999999998 455555555655554422 2478999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
|+..++- .. .+.+.+......+.++++||++|.||.++|+
T Consensus 131 Dl~~~~~----~~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 170 (179)
T 1z0f_A 131 DLEAQRD----VT-------------YEEAKQFAEENGLLFLEASAKTGENVEDAFL 170 (179)
T ss_dssp TCGGGCC----SC-------------HHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred ccccccc----cC-------------HHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9965321 00 1122222223457789999999999999995
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.7e-16 Score=127.64 Aligned_cols=123 Identities=13% Similarity=0.109 Sum_probs=88.8
Q ss_pred ecccceeE--EEEeee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|... ..+.++ .+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+.
T Consensus 38 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~----------~~s~~~~~~~~~~i~ 107 (206)
T 2bcg_Y 38 ISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTD----------QESFNGVKMWLQEID 107 (206)
T ss_dssp CCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTC----------HHHHHHHHHHHHHHH
T ss_pred CCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 45555433 334443 3689999999999999999999999999999999998 566777666766665
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
... ..+.|++|++||+|+..++... ............+.++++||++|.||+++|..
T Consensus 108 ~~~-~~~~piilv~nK~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 164 (206)
T 2bcg_Y 108 RYA-TSTVLKLLVGNKCDLKDKRVVE-----------------YDVAKEFADANKMPFLETSALDSTNVEDAFLT 164 (206)
T ss_dssp HHS-CTTCEEEEEEECTTCTTTCCSC-----------------HHHHHHHHHHTTCCEEECCTTTCTTHHHHHHH
T ss_pred Hhc-CCCCCEEEEEECCCCccccccC-----------------HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 432 3478999999999996532100 11111111224567889999999999999974
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.1e-16 Score=125.60 Aligned_cols=110 Identities=11% Similarity=0.124 Sum_probs=85.5
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+.+||++|++.++..|..|+++++++|+|+|+++ ..++.....++..+.......++|++||+||+|
T Consensus 65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 134 (187)
T 2a9k_A 65 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITE----------MESFAATADFREQILRVKEDENVPFLLVGNKSD 134 (187)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGG
T ss_pred EEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 3689999999999999999999999999999999998 667777777777777654445799999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+..++. +. ...+.+......+.++++||++|.||.++|+.
T Consensus 135 l~~~~~----~~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 174 (187)
T 2a9k_A 135 LEDKRQ----VS-------------VEEAKNRAEQWNVNYVETSAKTRANVDKVFFD 174 (187)
T ss_dssp GGGGCC----SC-------------HHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred ccccCc----cC-------------HHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence 975321 10 11222222234567899999999999999963
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-15 Score=120.97 Aligned_cols=128 Identities=13% Similarity=0.077 Sum_probs=90.2
Q ss_pred ecccceeE--EEEee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|... ..+.+ ....+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~l~ 105 (170)
T 1z0j_A 36 NPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITK----------EETFSTLKNWVRELR 105 (170)
T ss_dssp CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHH
T ss_pred CCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 45555432 23333 34789999999999999999999999999999999998 566666666666665
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 242 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~ 242 (262)
.. ...+.|++|++||+|+..++- .. ............+.++++||++|.||+++|+ ++.+
T Consensus 106 ~~-~~~~~~iilv~nK~Dl~~~~~----v~-------------~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~--~i~~ 165 (170)
T 1z0j_A 106 QH-GPPSIVVAIAGNKCDLTDVRE----VM-------------ERDAKDYADSIHAIFVETSAKNAININELFI--EISR 165 (170)
T ss_dssp HH-SCTTSEEEEEEECTTCGGGCC----SC-------------HHHHHHHHHHTTCEEEECBTTTTBSHHHHHH--HHHH
T ss_pred Hh-CCCCCcEEEEEECCccccccc----cC-------------HHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH--HHHH
Confidence 43 235789999999999975321 00 1111221222456788999999999999995 4544
Q ss_pred hc
Q psy6623 243 KI 244 (262)
Q Consensus 243 ~i 244 (262)
.+
T Consensus 166 ~i 167 (170)
T 1z0j_A 166 RI 167 (170)
T ss_dssp HC
T ss_pred HH
Confidence 43
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.6e-16 Score=124.17 Aligned_cols=122 Identities=13% Similarity=0.104 Sum_probs=79.4
Q ss_pred ecccceeE--EEEeee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|... ..+.++ .+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+.
T Consensus 36 ~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~ 105 (170)
T 1z08_A 36 ITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITD----------EDSFQKVKNWVKELR 105 (170)
T ss_dssp CCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTC----------HHHHHHHHHHHHHHH
T ss_pred CCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 45556433 334443 3678999999999999999999999999999999998 556666666665554
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
.. ...++|++|++||+|+..++... ..-+........+.++++||++|.||+++|+
T Consensus 106 ~~-~~~~~piilv~nK~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1z08_A 106 KM-LGNEICLCIVGNKIDLEKERHVS-----------------IQEAESYAESVGAKHYHTSAKQNKGIEELFL 161 (170)
T ss_dssp HH-HGGGSEEEEEEECGGGGGGCCSC-----------------HHHHHHHHHHTTCEEEEEBTTTTBSHHHHHH
T ss_pred Hh-cCCCCeEEEEEECcccccccccC-----------------HHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence 32 12468999999999997632110 1111111222456788999999999999995
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4e-16 Score=123.52 Aligned_cols=121 Identities=13% Similarity=0.157 Sum_probs=86.9
Q ss_pred ecccceeE--EEEeee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|... ..+.++ .+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+.
T Consensus 35 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~ 104 (168)
T 1z2a_A 35 KKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTD----------RESFEAISSWREKVV 104 (168)
T ss_dssp SCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 34555332 333333 4689999999999999999999999999999999998 556666666666665
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
... .+.|++|++||+|+..++. .. ...+........+.++++||++|.||+++|+
T Consensus 105 ~~~--~~~piilv~nK~Dl~~~~~----~~-------------~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 159 (168)
T 1z2a_A 105 AEV--GDIPTALVQNKIDLLDDSC----IK-------------NEEAEGLAKRLKLRFYRTSVKEDLNVSEVFK 159 (168)
T ss_dssp HHH--CSCCEEEEEECGGGGGGCS----SC-------------HHHHHHHHHHHTCEEEECBTTTTBSSHHHHH
T ss_pred HhC--CCCCEEEEEECcccCcccc----cC-------------HHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence 432 5789999999999975321 00 1111222222456788999999999999995
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.9e-16 Score=129.30 Aligned_cols=123 Identities=12% Similarity=0.056 Sum_probs=86.5
Q ss_pred eccccee--EEEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIV--EVHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~--~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|.. ...+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.
T Consensus 55 ~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~ 124 (200)
T 2o52_A 55 NHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS----------RETYNSLAAWLTDAR 124 (200)
T ss_dssp -----CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 4565643 33444444 789999999999999999999999999999999998 566666667776665
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
... ..++|++||+||+|+..++... ..-.........+.+++|||++|.||.++|..
T Consensus 125 ~~~-~~~~piilv~nK~Dl~~~~~v~-----------------~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 181 (200)
T 2o52_A 125 TLA-SPNIVVILCGNKKDLDPEREVT-----------------FLEASRFAQENELMFLETSALTGENVEEAFLK 181 (200)
T ss_dssp HHT-CTTCEEEEEEECGGGGGGCCSC-----------------HHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred Hhc-CCCCcEEEEEECCCcccccccC-----------------HHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 432 2579999999999996532110 01111112225577899999999999999964
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.2e-16 Score=125.92 Aligned_cols=123 Identities=13% Similarity=0.141 Sum_probs=88.6
Q ss_pred eccccee--EEEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIV--EVHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~--~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|.. ...+.+++ +.+.+||++|++.++..|..|+++++++|+|+|+++ ..++.....|+..+.
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~ 115 (196)
T 3tkl_A 46 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD----------QESFNNVKQWLQEID 115 (196)
T ss_dssp CCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 4555543 34444544 789999999999999999999999999999999998 566666666666665
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
... ..+.|++|++||+|+..++... ............+.++++||++|.||.++|..
T Consensus 116 ~~~-~~~~p~ilv~nK~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 172 (196)
T 3tkl_A 116 RYA-SENVNKLLVGNKCDLTTKKVVD-----------------YTTAKEFADSLGIPFLETSAKNATNVEQSFMT 172 (196)
T ss_dssp HHS-CTTCEEEEEEECTTCTTTCCSC-----------------HHHHHHHHHHTTCCEEEECTTTCTTHHHHHHH
T ss_pred Hhc-CCCCCEEEEEECcccccccccC-----------------HHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Confidence 432 3578999999999986532110 11111112224567899999999999999964
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.62 E-value=4.7e-16 Score=122.69 Aligned_cols=109 Identities=14% Similarity=0.128 Sum_probs=83.9
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
...+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+.......+.|++|++||+|
T Consensus 50 ~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 119 (167)
T 1kao_A 50 PSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVN----------QQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVD 119 (167)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGG
T ss_pred EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCc
Confidence 4569999999999999999999999999999999998 667777777887777654446799999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+..++- +. ............+.++++||++|.||.++|+
T Consensus 120 l~~~~~----~~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 158 (167)
T 1kao_A 120 LESERE----VS-------------SSEGRALAEEWGCPFMETSAKSKTMVDELFA 158 (167)
T ss_dssp GGGGCC----SC-------------HHHHHHHHHHHTSCEEEECTTCHHHHHHHHH
T ss_pred cccccc----CC-------------HHHHHHHHHHhCCCEEEecCCCCcCHHHHHH
Confidence 865321 10 0111111112356788999999999999995
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.2e-16 Score=126.50 Aligned_cols=110 Identities=11% Similarity=0.124 Sum_probs=85.5
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+.+||++|++.++..|..|+++++++|+|+|+++ ..++.....|+..+.......++|++|++||+|
T Consensus 61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 130 (206)
T 2bov_A 61 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITE----------MESFAATADFREQILRVKEDENVPFLLVGNKSD 130 (206)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTT
T ss_pred EEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccC
Confidence 3689999999999999999999999999999999998 677777777777777654445799999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+..++- +. ...+........+.++++||++|.||+++|..
T Consensus 131 l~~~~~----~~-------------~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 170 (206)
T 2bov_A 131 LEDKRQ----VS-------------VEEAKNRAEQWNVNYVETSAKTRANVDKVFFD 170 (206)
T ss_dssp CGGGCC----SC-------------HHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred cccccc----cc-------------HHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence 975321 10 11122222224567889999999999999964
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-15 Score=124.96 Aligned_cols=123 Identities=15% Similarity=0.137 Sum_probs=85.6
Q ss_pred eccccee--EEEEeee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIV--EVHFSFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~--~~~~~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|.. ...+.++ .+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.
T Consensus 56 ~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~----------~~s~~~~~~~~~~i~ 125 (192)
T 2il1_A 56 KSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITK----------KETFDDLPKWMKMID 125 (192)
T ss_dssp -CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 5666643 3344443 3789999999999999999999999999999999998 455555555544443
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
. ....++|++|++||+|+..++. +. .+.+...... ..+.+++|||++|.||+++|+.
T Consensus 126 ~-~~~~~~piilV~NK~Dl~~~~~----v~-------------~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 183 (192)
T 2il1_A 126 K-YASEDAELLLVGNKLDCETDRE----IT-------------RQQGEKFAQQITGMRFCEASAKDNFNVDEIFLK 183 (192)
T ss_dssp H-HSCTTCEEEEEEECGGGGGGCC----SC-------------HHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHH
T ss_pred H-hcCCCCcEEEEEECcccccccc----cC-------------HHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHH
Confidence 3 2235799999999999965321 10 0111111111 2467889999999999999963
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=7.8e-16 Score=122.24 Aligned_cols=110 Identities=12% Similarity=0.082 Sum_probs=79.3
Q ss_pred ccceeeeecCCccccch-hhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 101 NLNFKLFDVGGQRSERK-KWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~-~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+.+.+||++|++.++. .|..++++++++|+|+|+++ ..++.....++..+.......++|++|++||+
T Consensus 50 ~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 119 (169)
T 3q85_A 50 EVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTD----------RRSFSKVPETLLRLRAGRPHHDLPVILVGNKS 119 (169)
T ss_dssp EEEEEEECCCCC--------CHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHSTTSCCCEEEEEECT
T ss_pred EEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCC----------hHHHHHHHHHHHHHHhcccCCCCCEEEEeeCc
Confidence 47789999999999876 88889999999999999998 67778888888888765555689999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+..++... ............+.++++||++|.||.++|..
T Consensus 120 Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 160 (169)
T 3q85_A 120 DLARSREVS-----------------LEEGRHLAGTLSCKHIETSAALHHNTRELFEG 160 (169)
T ss_dssp TCGGGCCSC-----------------HHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred chhhcccCC-----------------HHHHHHHHHHcCCcEEEecCccCCCHHHHHHH
Confidence 997532110 11122222224567899999999999999963
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.61 E-value=7.7e-16 Score=125.23 Aligned_cols=113 Identities=11% Similarity=0.123 Sum_probs=82.0
Q ss_pred EEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeE
Q psy6623 95 VHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSI 172 (262)
Q Consensus 95 ~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pi 172 (262)
..+.+++ +.+++||++|++.++ |+++++++|+|+|+++ ..++.+...|+..+.......++|+
T Consensus 58 ~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~pi 122 (184)
T 3ihw_A 58 KEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLED----------EISFQTVYNYFLRLCSFRNASEVPM 122 (184)
T ss_dssp EEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHTTSCGGGSCE
T ss_pred EEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 3344443 678899999999887 8899999999999998 6788888888888876544467999
Q ss_pred EEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhc-cceeecccccccceeeeeehh
Q psy6623 173 ILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLF-DSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 173 il~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~-~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+|++||+|+..+. ...+. ...+....... .+.+++|||++|.||+++|+.
T Consensus 123 ilv~nK~Dl~~~~--~~~v~-------------~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~ 173 (184)
T 3ihw_A 123 VLVGTQDAISAAN--PRVID-------------DSRARKLSTDLKRCTYYETCATYGLNVERVFQD 173 (184)
T ss_dssp EEEEECTTCBTTB--CCCSC-------------HHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHH
T ss_pred EEEEECccccccc--ccccC-------------HHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHH
Confidence 9999999985311 00000 11122222222 367889999999999999963
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.6e-16 Score=127.24 Aligned_cols=134 Identities=13% Similarity=0.116 Sum_probs=84.6
Q ss_pred eccccee--EEEEeee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIV--EVHFSFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~--~~~~~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.+|+|.. ...+.++ .+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.
T Consensus 58 ~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~----------~~s~~~~~~~~~~i~ 127 (199)
T 2p5s_A 58 SATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTC----------EKSFLNIREWVDMIE 127 (199)
T ss_dssp -------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCC----------hHHHHHHHHHHHHHH
Confidence 4555533 2334443 4779999999999999999999999999999999998 455555555555544
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 242 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~ 242 (262)
.. ...++|++||+||+|+......... .. .. ............+.+++|||++|.||.++|. +|..
T Consensus 128 ~~-~~~~~piilv~NK~Dl~~~~~~~~~-~~-------v~---~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~--~l~~ 193 (199)
T 2p5s_A 128 DA-AHETVPIMLVGNKADIRDTAATEGQ-KC-------VP---GHFGEKLAMTYGALFCETSAKDGSNIVEAVL--HLAR 193 (199)
T ss_dssp HH-C---CCEEEEEECGGGHHHHHHTTC-CC-------CC---HHHHHHHHHHHTCEEEECCTTTCTTHHHHHH--HHHH
T ss_pred Hh-cCCCCCEEEEEECcccccccccccc-cc-------cC---HHHHHHHHHHcCCeEEEeeCCCCCCHHHHHH--HHHH
Confidence 32 2247899999999999753211100 00 00 1112222222456788999999999999995 4444
Q ss_pred hc
Q psy6623 243 KI 244 (262)
Q Consensus 243 ~i 244 (262)
.+
T Consensus 194 ~i 195 (199)
T 2p5s_A 194 EV 195 (199)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-16 Score=126.76 Aligned_cols=123 Identities=12% Similarity=0.131 Sum_probs=85.0
Q ss_pred ecccceeE--EEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|... ..+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~ 106 (177)
T 1wms_A 37 FHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDD----------SQSFQNLSNWKKEFI 106 (177)
T ss_dssp --CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 56667543 3344443 689999999999999999999999999999999998 445544444444443
Q ss_pred ---hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhh-hccceeecccccccceeeeeehh
Q psy6623 163 ---NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLK-LFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ---~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~-~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
......++|++|++||+|+...... .+-+.+... ...+.++++||++|.||.++|+.
T Consensus 107 ~~~~~~~~~~~p~i~v~nK~Dl~~~~~~------------------~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 167 (177)
T 1wms_A 107 YYADVKEPESFPFVILGNKIDISERQVS------------------TEEAQAWCRDNGDYPYFETSAKDATNVAAAFEE 167 (177)
T ss_dssp HHHTCSCTTTSCEEEEEECTTCSSCSSC------------------HHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHH
T ss_pred HHccccccCCCcEEEEEECCcccccccC------------------HHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHH
Confidence 3333367899999999998621100 111122112 24567889999999999999963
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.3e-16 Score=126.62 Aligned_cols=110 Identities=12% Similarity=0.086 Sum_probs=82.3
Q ss_pred ccceeeeecCCccccch-hhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 101 NLNFKLFDVGGQRSERK-KWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~-~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+.+.+||++|++.++. +|..|+++++++|+|+|+++ ..++.....|+..+.......++|++|++||+
T Consensus 71 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 140 (195)
T 3cbq_A 71 EVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTD----------RRSFSKVPETLLRLRAGRPHHDLPVILVGNKS 140 (195)
T ss_dssp EEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHSTTSCCCEEEEEECT
T ss_pred EEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEeech
Confidence 46789999999998875 88899999999999999998 66777777777777654333579999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+..++... .+-.........+.+++|||++|.||+++|..
T Consensus 141 Dl~~~~~v~-----------------~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~ 181 (195)
T 3cbq_A 141 DLARSREVS-----------------LEEGRHLAGTLSCKHIETSAALHHNTRELFEG 181 (195)
T ss_dssp TCTTTCCSC-----------------HHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred hccccCCcC-----------------HHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHH
Confidence 996532110 01111111123466889999999999999964
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-15 Score=121.17 Aligned_cols=110 Identities=14% Similarity=0.105 Sum_probs=76.0
Q ss_pred ccceeeeecCCccc--cchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeC
Q psy6623 101 NLNFKLFDVGGQRS--ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNK 178 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~--~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK 178 (262)
.+.+.+||++|++. ++.++..++++++++|+|+|+++ ..++.....|+..+.......++|++|++||
T Consensus 51 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~l~~~~~~~~~piilv~NK 120 (175)
T 2nzj_A 51 DTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIAD----------RGSFESASELRIQLRRTHQADHVPIILVGNK 120 (175)
T ss_dssp EEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTC----------HHHHHHHHHHHHHHHHCC----CCEEEEEEC
T ss_pred EEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhhccCCCCEEEEEEC
Confidence 36789999999998 67778889999999999999998 6777777777777776544457999999999
Q ss_pred CchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 179 KDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 179 ~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+|+..++- +. ..-.........+.+++|||++|.||+++|..
T Consensus 121 ~Dl~~~~~----v~-------------~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 162 (175)
T 2nzj_A 121 ADLARCRE----VS-------------VEEGRACAVVFDCKFIETSATLQHNVAELFEG 162 (175)
T ss_dssp TTCTTTCC----SC-------------HHHHHHHHHHHTSEEEECBTTTTBSHHHHHHH
T ss_pred hhhccccc----cC-------------HHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence 99965321 10 01111111123467889999999999999963
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=9.3e-16 Score=122.99 Aligned_cols=125 Identities=13% Similarity=0.078 Sum_probs=74.7
Q ss_pred ecccce--eEEEEeee---ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHH
Q psy6623 87 VKTTGI--VEVHFSFK---NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSI 161 (262)
Q Consensus 87 ~pT~Gi--~~~~~~~~---~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i 161 (262)
.||+|. ....+.++ ...+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~ 107 (182)
T 1ky3_A 38 KATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTN----------ASSFENIKSWRDEF 107 (182)
T ss_dssp ---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETTC----------HHHHHTHHHHHHHH
T ss_pred CCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCC----------hHHHHHHHHHHHHH
Confidence 355553 33334443 3678999999999999999999999999999999998 45555555555555
Q ss_pred HhC---CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhh-hccceeecccccccceeeeeehh
Q psy6623 162 CNN---KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLK-LFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 162 ~~~---~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~-~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
... ....+.|++|++||+|+....-. .. ...+..... ...+.+++|||++|.||+++|+.
T Consensus 108 ~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~---v~-------------~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 171 (182)
T 1ky3_A 108 LVHANVNSPETFPFVILGNKIDAEESKKI---VS-------------EKSAQELAKSLGDIPLFLTSAKNAINVDTAFEE 171 (182)
T ss_dssp HHHHCCSCTTTCCEEEEEECTTSCGGGCC---SC-------------HHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHH
T ss_pred HHHhcccCcCCCcEEEEEECCcccccccc---CC-------------HHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHH
Confidence 432 23367899999999998542100 00 111111111 14567889999999999999963
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.9e-16 Score=125.30 Aligned_cols=110 Identities=9% Similarity=0.084 Sum_probs=78.4
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC--CCCCCeEEEEee
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK--WFTDTSIILFLN 177 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~--~~~~~piil~~N 177 (262)
..+.+++||++|++.++.+ ..|+++++++|+|+|+++ ..++.+...|+..+.... ...++|++|++|
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~~piilv~n 135 (187)
T 3c5c_A 67 QPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDS----------RQSFDSSSSYLELLALHAKETQRSIPALLLGN 135 (187)
T ss_dssp EEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_pred EEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhhccCCCCCEEEEEE
Confidence 4578999999999999874 779999999999999998 677777777777766431 125789999999
Q ss_pred CCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccc-cccceeeeeehh
Q psy6623 178 KKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWF-TDTSIILFLNKK 237 (262)
Q Consensus 178 K~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA-~d~~~I~~~f~~ 237 (262)
|+|+..++... .+.+.+......+.+++||| ++|+||+++|+.
T Consensus 136 K~Dl~~~~~v~-----------------~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~ 179 (187)
T 3c5c_A 136 KLDMAQYRQVT-----------------KAEGVALAGRFGCLFFEVSACLDFEHVQHVFHE 179 (187)
T ss_dssp CGGGGGGCSSC-----------------HHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHH
T ss_pred CcchhhcCccC-----------------HHHHHHHHHHcCCcEEEEeecCccccHHHHHHH
Confidence 99996532100 11111112224567889999 899999999963
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-15 Score=125.24 Aligned_cols=110 Identities=13% Similarity=0.097 Sum_probs=82.5
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
..+.+.+||++|++. +..|..++++++++|+|+|+++ ..++.+...|+..+.......++|++|++||+
T Consensus 74 ~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~ 142 (196)
T 2atv_A 74 EVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITD----------RGSFEEVLPLKNILDEIKKPKNVTLILVGNKA 142 (196)
T ss_dssp EEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHHTTSCCCEEEEEECG
T ss_pred EEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhhCCCCCcEEEEEECc
Confidence 347799999999998 8899999999999999999998 56677766666666654334579999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccc-eeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTS-IILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~-~I~~~f~~ 237 (262)
|+..++. +. ............+.++++||++|. ||.++|+.
T Consensus 143 Dl~~~~~----v~-------------~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~ 184 (196)
T 2atv_A 143 DLDHSRQ----VS-------------TEEGEKLATELACAFYECSACTGEGNITEIFYE 184 (196)
T ss_dssp GGGGGCC----SC-------------HHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHH
T ss_pred ccccccc----cC-------------HHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHH
Confidence 9976321 10 111111111235778899999999 99999963
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-15 Score=120.33 Aligned_cols=118 Identities=12% Similarity=0.088 Sum_probs=83.1
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC-CCCCCCeEEEEeeC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN-KWFTDTSIILFLNK 178 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~-~~~~~~piil~~NK 178 (262)
..+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+... ....+.|++|++||
T Consensus 49 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK 118 (172)
T 2erx_A 49 SICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITS----------RQSLEELKPIYEQICEIKGDVESIPIMLVGNK 118 (172)
T ss_dssp EEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTC----------HHHHHTTHHHHHHHHHHHC---CCCEEEEEEC
T ss_pred EEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEc
Confidence 34679999999999999999999999999999999998 45555555555555432 12357899999999
Q ss_pred CchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhccC
Q psy6623 179 KDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKK 246 (262)
Q Consensus 179 ~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~~ 246 (262)
+|+..++- +. ............+.++++||++|.||+++|+ +|.+.+.+
T Consensus 119 ~Dl~~~~~----v~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~--~l~~~~~~ 167 (172)
T 2erx_A 119 CDESPSRE----VQ-------------SSEAEALARTWKCAFMETSAKLNHNVKELFQ--ELLNLEKR 167 (172)
T ss_dssp GGGGGGCC----SC-------------HHHHHHHHHHHTCEEEECBTTTTBSHHHHHH--HHHHTCCS
T ss_pred cccccccc----cC-------------HHHHHHHHHHhCCeEEEecCCCCcCHHHHHH--HHHHHHhh
Confidence 99975321 10 0111111122346788999999999999995 55555543
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-15 Score=124.83 Aligned_cols=119 Identities=10% Similarity=0.054 Sum_probs=80.0
Q ss_pred cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHH-HHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 102 LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL-KLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~-~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+.. .|+..+... ..++|++|++||+|
T Consensus 66 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~D 133 (194)
T 2atx_A 66 YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVN----------PASFQNVKEEWVPELKEY--APNVPFLLIGTQID 133 (194)
T ss_dssp EEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--STTCCEEEEEECTT
T ss_pred EEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChh
Confidence 788999999999999999999999999999999998 56676665 455555432 24799999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~~ 237 (262)
+..+.-....+.... ...-. ............+ .+++|||++|.||+++|+.
T Consensus 134 l~~~~~~~~~~~~~~---~~~v~--~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 186 (194)
T 2atx_A 134 LRDDPKTLARLNDMK---EKPIC--VEQGQKLAKEIGACCYVECSALTQKGLKTVFDE 186 (194)
T ss_dssp STTCHHHHHHHTTTT---CCCCC--HHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHH
T ss_pred hcccccchhhccccc---CcccC--HHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHH
Confidence 975321100000000 00000 1111111111233 6889999999999999963
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-15 Score=124.52 Aligned_cols=120 Identities=16% Similarity=0.164 Sum_probs=80.7
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHH-HHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL-KLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~-~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+.+.+||++|++.++.+|..++++++++|+|+|+++ ..++.+.. .|+..+... ..++|++||+||+
T Consensus 67 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~ 134 (201)
T 2q3h_A 67 PVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVS----------PSSFQNVSEKWVPEIRCH--CPKAPIILVGTQS 134 (201)
T ss_dssp EEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--CSSSCEEEEEECG
T ss_pred EEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEECH
Confidence 3678899999999999999999999999999999998 56777765 455555432 2479999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~~ 237 (262)
|+..+.-....+...- ...-. ............. .+++|||++|.||.++|+.
T Consensus 135 Dl~~~~~~~~~~~~~~---~~~v~--~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 188 (201)
T 2q3h_A 135 DLREDVKVLIELDKCK---EKPVP--EEAAKLLAEEIKAASYIECSALTQKNLKEVFDA 188 (201)
T ss_dssp GGGGCHHHHHHHHTTT---CCCCC--HHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHH
T ss_pred hhhhchhhhhhhcccc---cccCC--HHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHH
Confidence 9975321100000000 00000 1111111111233 6889999999999999964
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.4e-15 Score=124.05 Aligned_cols=124 Identities=14% Similarity=0.087 Sum_probs=87.4
Q ss_pred eecccceeEEEEeeec-----cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHH
Q psy6623 86 RVKTTGIVEVHFSFKN-----LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDS 160 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~-----~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~ 160 (262)
+.+|+|.......+.. +.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..
T Consensus 40 ~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~ 109 (218)
T 4djt_A 40 YNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTS----------RITCQNLARWVKE 109 (218)
T ss_dssp EETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHH
T ss_pred CCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCC----------HHHHHHHHHHHHH
Confidence 4677776655554421 679999999999999999999999999999999998 4455554445444
Q ss_pred HHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 161 ICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 161 i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+... ...+.|++||+||+|+..++... ...+........+.++++||++|.||+++|..
T Consensus 110 ~~~~-~~~~~piilv~nK~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 168 (218)
T 4djt_A 110 FQAV-VGNEAPIVVCANKIDIKNRQKIS-----------------KKLVMEVLKGKNYEYFEISAKTAHNFGLPFLH 168 (218)
T ss_dssp HHHH-HCSSSCEEEEEECTTCC----CC-----------------HHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHH
T ss_pred HHHh-cCCCCCEEEEEECCCCccccccC-----------------HHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Confidence 4432 12358999999999986532110 11222222335577899999999999999964
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-15 Score=127.10 Aligned_cols=120 Identities=13% Similarity=0.075 Sum_probs=89.8
Q ss_pred eecccceeEEEEee----eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHH
Q psy6623 86 RVKTTGIVEVHFSF----KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSI 161 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~----~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i 161 (262)
+.+|+|.......+ +++.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+
T Consensus 44 ~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~ 113 (221)
T 3gj0_A 44 YVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTS----------RVTYKNVPNWHRDL 113 (221)
T ss_dssp EETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHH
T ss_pred CCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHH
Confidence 35666755444333 45789999999999999999999999999999999998 56666666666666
Q ss_pred HhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 162 CNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 162 ~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
... ..++|++||+||+|+..++... .. ..+... ..+.+++|||++|.||.++|.
T Consensus 114 ~~~--~~~~p~ilv~nK~Dl~~~~~~~-~~--------------~~~~~~----~~~~~~~~Sa~~~~gi~~l~~ 167 (221)
T 3gj0_A 114 VRV--CENIPIVLCGNKVDIKDRKVKA-KS--------------IVFHRK----KNLQYYDISAKSNYNFEKPFL 167 (221)
T ss_dssp HHH--STTCCEEEEEECTTSSSCSSCG-GG--------------CCHHHH----HTCEEEECBGGGTBTTTHHHH
T ss_pred HHh--CCCCCEEEEEECCccccccccH-HH--------------HHHHHH----cCCEEEEEeCCCCCCHHHHHH
Confidence 643 2478999999999996533211 00 122222 346788999999999999995
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-15 Score=125.48 Aligned_cols=116 Identities=13% Similarity=0.103 Sum_probs=79.0
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHH-HHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL-KLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~-~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+.+.+||++|++.++.+|..|+++++++|+|+|+++ ..++.+.. .|+..+... ..++|++|++||+
T Consensus 56 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~ 123 (212)
T 2j0v_A 56 IVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLIS----------KASYENVLKKWMPELRRF--APNVPIVLVGTKL 123 (212)
T ss_dssp EEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--CTTCCEEEEEECH
T ss_pred EEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEeCH
Confidence 3689999999999999999999999999999999998 56677665 455554432 2479999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhcc-ceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFD-SICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~-~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+..++...... .+.-. ............ ..+++|||++|+||.++|+.
T Consensus 124 Dl~~~~~~~~~~-------~~~v~--~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 173 (212)
T 2j0v_A 124 DLRDDKGYLADH-------TNVIT--STQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 173 (212)
T ss_dssp HHHTCHHHHHTC-------SSCCC--HHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHH
T ss_pred HhhhCccccccc-------cCCCC--HHHHHHHHHHcCCceEEEccCCCCCCHHHHHHH
Confidence 997643210000 00000 111111111223 36889999999999999974
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-15 Score=120.43 Aligned_cols=122 Identities=12% Similarity=0.174 Sum_probs=83.3
Q ss_pred eccccee--EEEEeee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIV--EVHFSFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~--~~~~~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|.. ...+.++ .+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+.
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~ 102 (170)
T 1g16_A 33 ITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITD----------ERTFTNIKQWFKTVN 102 (170)
T ss_dssp -----CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 4555533 3344444 3689999999999999999999999999999999998 455666566666655
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
... ..+.|++|++||+|+...... .+-.........+.++++||++|.||.++|..
T Consensus 103 ~~~-~~~~piilv~nK~Dl~~~~~~------------------~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 158 (170)
T 1g16_A 103 EHA-NDEAQLLLVGNKSDMETRVVT------------------ADQGEALAKELGIPFIESSAKNDDNVNEIFFT 158 (170)
T ss_dssp HHS-CTTCEEEEEEECTTCTTCCSC------------------HHHHHHHHHHHTCCEEECBTTTTBSHHHHHHH
T ss_pred Hhc-CCCCcEEEEEECccCCcCccC------------------HHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 432 247899999999998321100 01111111223467899999999999999963
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=4e-16 Score=134.79 Aligned_cols=111 Identities=10% Similarity=0.058 Sum_probs=78.2
Q ss_pred ecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHH---HHHhCCC-CCCCeEEEEeeC-Cchh
Q psy6623 108 DVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFD---SICNNKW-FTDTSIILFLNK-KDLF 182 (262)
Q Consensus 108 D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~---~i~~~~~-~~~~piil~~NK-~Dl~ 182 (262)
|+|||++.|..|.+||++++|+|||||.+| ..|+. +.+.+. .+++... +.++|++|++|| +|++
T Consensus 193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsD----------reRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp 261 (312)
T 3l2o_B 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEA----------HKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 261 (312)
T ss_dssp ----CCCCCHHHHHHHHHCSEEEECCBCBT----------TCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTS
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEecCCc----------HhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCccccc
Confidence 479999999999999999999999999999 56654 555444 5555433 578999999997 5885
Q ss_pred hhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhccC
Q psy6623 183 EEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKK 246 (262)
Q Consensus 183 ~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~~ 246 (262)
. .+...++.+.+ | .... .|.|+++.|||++|+|+.+++ +||.+.+.+
T Consensus 262 ~-Ams~~EI~e~L----~---------L~~l-~r~W~Iq~csA~tGeGL~EGl--dWL~~~l~~ 308 (312)
T 3l2o_B 262 K-RMPCFYLAHEL----H---------LNLL-NHPWLVQDTEAETLTGFLNGI--EWILEEVES 308 (312)
T ss_dssp C-BCCHHHHHHHT----T---------GGGG-CSCEEEEEEETTTCTTHHHHH--HHHHHHSCC
T ss_pred C-CCCHHHHHHHc----C---------CccC-CCcEEEEecccCCCcCHHHHH--HHHHHHHHh
Confidence 4 22221221100 0 0111 278999999999999999999 799887754
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-15 Score=124.85 Aligned_cols=120 Identities=15% Similarity=0.208 Sum_probs=79.0
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+....|...+.. ...++|++|++||+|
T Consensus 72 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~D 140 (201)
T 2gco_A 72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS----------PDSLENIPEKWTPEVKH-FCPNVPIILVGNKKD 140 (201)
T ss_dssp EEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHH-HSTTCCEEEEEECGG
T ss_pred EEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHH-hCCCCCEEEEEecHH
Confidence 4689999999999999999999999999999999998 56666663333333322 124799999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeeh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~ 236 (262)
+..+......+...... ... ............. .++++||++|.||.++|+
T Consensus 141 l~~~~~~~~~~~~~~~~--~v~---~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 192 (201)
T 2gco_A 141 LRQDEHTRRELAKMKQE--PVR---SEEGRDMANRISAFGYLECSAKTKEGVREVFE 192 (201)
T ss_dssp GTTCHHHHHHHHTTTCC--CCC---HHHHHHHHHHTTCSEEEECCTTTCTTHHHHHH
T ss_pred hhcCccchhhhcccccC--cCC---HHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHH
Confidence 97532111111000000 000 1111111112233 678999999999999995
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.58 E-value=4e-15 Score=124.24 Aligned_cols=110 Identities=17% Similarity=0.168 Sum_probs=81.5
Q ss_pred ccceeeeecCCccc-cchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 101 NLNFKLFDVGGQRS-ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~-~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+.+.+|||+|++. ++.++..|+++++++|+|+|+++ ..++.....|+..+.......++|++||+||+
T Consensus 86 ~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~----------~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~ 155 (211)
T 2g3y_A 86 SATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITD----------RASFEKASELRIQLRRARQTEDIPIILVGNKS 155 (211)
T ss_dssp EEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTC----------HHHHHHHHHHHHHHHTSGGGTTSCEEEEEECT
T ss_pred eeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhCCCCCcEEEEEECh
Confidence 35678999999988 67788889999999999999998 67888877777777653334579999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
||..++... ... | ..+. ....+.+++|||++|+||+++|..
T Consensus 156 DL~~~r~v~--~~e------~-----~~~a----~~~~~~~~e~SAk~g~~v~elf~~ 196 (211)
T 2g3y_A 156 DLVRCREVS--VSE------G-----RACA----VVFDCKFIETSAAVQHNVKELFEG 196 (211)
T ss_dssp TCGGGCCSC--HHH------H-----HHHH----HHHTCEEEECBTTTTBSHHHHHHH
T ss_pred HHhcCceEe--HHH------H-----HHHH----HHcCCEEEEEeCCCCCCHHHHHHH
Confidence 997532110 000 0 1111 113467889999999999999964
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.58 E-value=3.5e-15 Score=123.11 Aligned_cols=122 Identities=14% Similarity=0.177 Sum_probs=86.4
Q ss_pred eccccee--EEEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIV--EVHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~--~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|.. ...+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+.
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~ 119 (213)
T 3cph_A 50 ITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTD----------ERTFTNIKQWFKTVN 119 (213)
T ss_dssp SCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 4555533 34455554 789999999999999999999999999999999998 455655556666655
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
... ..++|++||+||+|+.... .. ............+.++++||++|.||.++|..
T Consensus 120 ~~~-~~~~piilv~nK~Dl~~~~-----~~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 175 (213)
T 3cph_A 120 EHA-NDEAQLLLVGNKSDMETRV-----VT-------------ADQGEALAKELGIPFIESSAKNDDNVNEIFFT 175 (213)
T ss_dssp HHT-TTCSEEEEEEECTTCSSCC-----SC-------------HHHHHHHHHHHTCCEEECBTTTTBSSHHHHHH
T ss_pred Hhc-CCCCCEEEEEECCCCcccc-----cC-------------HHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 432 2478999999999983211 00 01111111123467889999999999999974
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.6e-15 Score=124.36 Aligned_cols=87 Identities=14% Similarity=0.217 Sum_probs=65.7
Q ss_pred ccceeEEEEeee---ccceeeeecCCccccch-hhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 89 TTGIVEVHFSFK---NLNFKLFDVGGQRSERK-KWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 89 T~Gi~~~~~~~~---~~~~~i~D~~Gq~~~r~-~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
|++.....+.++ ++.+++|||+|++.++. .|..|+++++++|+|+|++++ ...+.+...++..++..
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~---------~~~~~~~~~~~~~~~~~ 108 (214)
T 2fh5_B 38 SITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAF---------QREVKDVAEFLYQVLID 108 (214)
T ss_dssp CCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTH---------HHHHHHHHHHHHHHHHH
T ss_pred CcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCc---------CHHHHHHHHHHHHHHhh
Confidence 334444445555 57899999999999998 899999999999999999872 13466666777666543
Q ss_pred C--CCCCCeEEEEeeCCchhhh
Q psy6623 165 K--WFTDTSIILFLNKKDLFEE 184 (262)
Q Consensus 165 ~--~~~~~piil~~NK~Dl~~~ 184 (262)
. ...++|++|++||+|+..+
T Consensus 109 ~~~~~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 109 SMALKNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp HHTSTTCCEEEEEEECTTSTTC
T ss_pred hhhcccCCCEEEEEECCCCCCc
Confidence 1 2246899999999999653
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.3e-15 Score=121.56 Aligned_cols=109 Identities=13% Similarity=0.071 Sum_probs=81.2
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+.+||++|++.++..|..|+++++++|+|+|+++ ..++.+...++..+.......+.|++|++||+|
T Consensus 51 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D 120 (189)
T 4dsu_A 51 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINN----------TKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCD 120 (189)
T ss_dssp EEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTT
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcc
Confidence 3568899999999999999999999999999999998 677777777777777654456899999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+...... ...+........+.++++||++|.||.++|..
T Consensus 121 l~~~~~~------------------~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 159 (189)
T 4dsu_A 121 LPSRTVD------------------TKQAQDLARSYGIPFIETSAKTRQGVDDAFYT 159 (189)
T ss_dssp SSSCSSC------------------HHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred CcccccC------------------HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 8631100 11111111224467889999999999999964
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.9e-15 Score=123.11 Aligned_cols=123 Identities=11% Similarity=0.058 Sum_probs=85.1
Q ss_pred ecccceeEE--EEeee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEV--HFSFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~--~~~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.+|+|.... .+.++ .+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+.
T Consensus 38 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~ 107 (207)
T 1vg8_A 38 KATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTA----------PNTFKTLDSWRDEFL 107 (207)
T ss_dssp CCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 455564433 33333 3689999999999999999999999999999999998 455555545555444
Q ss_pred hC---CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhh-hccceeecccccccceeeeeehh
Q psy6623 163 NN---KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLK-LFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~---~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~-~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.. ....+.|++|++||+|+...... ...+..... ...+.++++||++|.||.++|+.
T Consensus 108 ~~~~~~~~~~~piilv~nK~Dl~~~~~~------------------~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 168 (207)
T 1vg8_A 108 IQASPRDPENFPFVVLGNKIDLENRQVA------------------TKRAQAWCYSKNNIPYFETSAKEAINVEQAFQT 168 (207)
T ss_dssp HHHCCSSGGGSCEEEEEECTTSSCCCSC------------------HHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHH
T ss_pred HhcccccCCCCcEEEEEECCCCcccccC------------------HHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHH
Confidence 32 22347899999999998631100 111111111 24567889999999999999964
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.4e-15 Score=121.54 Aligned_cols=105 Identities=15% Similarity=0.128 Sum_probs=80.4
Q ss_pred cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCch
Q psy6623 102 LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl 181 (262)
..+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.... +.|+++|+||+|
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~----------~~s~~~~~~~~~~i~~~~---~~piilv~NK~D- 158 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISN----------SNTLDRAKTWVNQLKISS---NYIIILVANKID- 158 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHS---CCEEEEEEECTT-
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHhhC---CCcEEEEEECCC-
Confidence 789999999999999999999999999999999998 566777777777776532 399999999999
Q ss_pred hhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 182 FEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 182 ~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
..++ .. . .+-+.+......+.++++||++|.||.++|+.
T Consensus 159 ~~~~----~~----------~---~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 197 (208)
T 3clv_A 159 KNKF----QV----------D---ILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYM 197 (208)
T ss_dssp CC-C----CS----------C---HHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred cccc----cC----------C---HHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Confidence 3211 00 0 12222222335678899999999999999963
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.57 E-value=5.4e-15 Score=119.02 Aligned_cols=126 Identities=15% Similarity=0.119 Sum_probs=82.4
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHH-HHHHHHHhCCCCCCCeEEEEeeC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL-KLFDSICNNKWFTDTSIILFLNK 178 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~-~~~~~i~~~~~~~~~piil~~NK 178 (262)
..+.+++||++|++.++..|..++++++++|+|+|+++ ..++.+.. .|+..+... ..+.|++|++||
T Consensus 51 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~piilv~nK 118 (186)
T 1mh1_A 51 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVS----------PASFENVRAKWYPEVRHH--CPNTPIILVGTK 118 (186)
T ss_dssp EEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--STTSCEEEEEEC
T ss_pred EEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCC----------hhhHHHHHHHHHHHHHHh--CCCCCEEEEeEc
Confidence 34678899999999999999999999999999999998 56676665 455544432 237999999999
Q ss_pred CchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeehhhHHHhhc
Q psy6623 179 KDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 179 ~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
+|+..+......+... ................... .++++||++|.||.++|+ ++...+
T Consensus 119 ~Dl~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~--~l~~~~ 178 (186)
T 1mh1_A 119 LDLRDDKDTIEKLKEK-----KLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD--EAIRAV 178 (186)
T ss_dssp HHHHTCHHHHHHHHHT-----TCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHH--HHHHHH
T ss_pred ccccccchhhhhhccc-----ccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHH--HHHHHH
Confidence 9997532110000000 0000001111111111333 688999999999999995 344443
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=4.3e-15 Score=120.28 Aligned_cols=120 Identities=14% Similarity=0.126 Sum_probs=78.9
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHH-HHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL-KLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~-~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+.. .|+..+... ..++|++|++||+
T Consensus 54 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~ 121 (184)
T 1m7b_A 54 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISR----------PETLDSVLKKWKGEIQEF--CPNTKMLLVGCKS 121 (184)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--CTTCEEEEEEECG
T ss_pred EEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcc
Confidence 4779999999999999999999999999999999998 56666663 444444332 2479999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhc-cceeeccccc-ccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLF-DSICNNKWFT-DTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~-~~~~~~tsA~-d~~~I~~~f~~ 237 (262)
|+..+.....++.. +....-. .+-........ .+.+++|||+ +|.||+++|+.
T Consensus 122 Dl~~~~~~~~~~~~---~~~~~v~--~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~ 176 (184)
T 1m7b_A 122 DLRTDVSTLVELSN---HRQTPVS--YDQGANMAKQIGAATYIECSALQSENSVRDIFHV 176 (184)
T ss_dssp GGGGCHHHHHHHHT---TTCCCCC--HHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHH
T ss_pred hhhcchhhHhhhhh---cccCCCC--HHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHH
Confidence 99753110000000 0000000 11111111112 2568899998 68999999964
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.57 E-value=3.5e-15 Score=123.28 Aligned_cols=120 Identities=16% Similarity=0.185 Sum_probs=78.9
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHH-HHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL-KLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~-~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+.. .|+..+... ..++|++|++||+
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~ 139 (207)
T 2fv8_A 72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDS----------PDSLENIPEKWVPEVKHF--CPNVPIILVANKK 139 (207)
T ss_dssp EEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--STTCCEEEEEECG
T ss_pred EEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEEch
Confidence 3689999999999999999999999999999999998 56666663 344443321 2478999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~~ 237 (262)
|+..+......+...... ... ............. .++++||++|.||+++|+.
T Consensus 140 Dl~~~~~~~~~~~~~~~~--~v~---~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~ 193 (207)
T 2fv8_A 140 DLRSDEHVRTELARMKQE--PVR---TDDGRAMAVRIQAYDYLECSAKTKEGVREVFET 193 (207)
T ss_dssp GGGGCHHHHHHHHHTTCC--CCC---HHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHH
T ss_pred hhhccccchhhhhhcccC--CCC---HHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHH
Confidence 997532111111110000 000 1111111111223 6789999999999999963
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.56 E-value=2.2e-15 Score=121.07 Aligned_cols=117 Identities=15% Similarity=0.112 Sum_probs=76.2
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHH-HHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL-KLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~-~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+.+++||++|++.++..|..++++++++|+|+|+++ ..++.+.. .|+..+... ..+.|++|++||+
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~ 122 (182)
T 3bwd_D 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----------KASYENVSKKWIPELKHY--APGVPIVLVGTKL 122 (182)
T ss_dssp ---CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--CTTCCEEEEEECH
T ss_pred EEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEech
Confidence 4678899999999999999999999999999999998 56666665 344444432 2479999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhcc-ceeecccccccceeeeeeh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFD-SICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~-~~~~~tsA~d~~~I~~~f~ 236 (262)
|+..++..... .+. ...-. ..-......... ..+++|||++|+||+++|+
T Consensus 123 Dl~~~~~~~~~----~~~-~~~v~--~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 173 (182)
T 3bwd_D 123 DLRDDKQFFID----HPG-AVPIT--TVQGEELKKLIGAPAYIECSSKSQENVKGVFD 173 (182)
T ss_dssp HHHTCHHHHHH----C---CCCCC--HHHHHHHHHHHTCSEEEECCTTTCTTHHHHHH
T ss_pred hhhcCcccccc----ccc-CCCCC--HHHHHHHHHHcCCCEEEEEECCCCCCHHHHHH
Confidence 99764321000 000 00000 111111111123 3678999999999999996
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.55 E-value=9.3e-15 Score=121.03 Aligned_cols=120 Identities=13% Similarity=0.111 Sum_probs=79.1
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHH-HHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQES-LKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~-~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+.+.+||++|++.++.+|..++++++++|+|+|+++ ..++.+. ..|+..+... ..++|++|++||+
T Consensus 75 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~----------~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~ 142 (205)
T 1gwn_A 75 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISR----------PETLDSVLKKWKGEIQEF--CPNTKMLLVGCKS 142 (205)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--CTTCEEEEEEECG
T ss_pred EEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHH--CCCCCEEEEEech
Confidence 4789999999999999999999999999999999998 5666666 3444444432 2479999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhcc-ceeeccccc-ccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFD-SICNNKWFT-DTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~-~~~~~tsA~-d~~~I~~~f~~ 237 (262)
|+..+......+.. +....-. .+-......... +.+++|||+ +|.||+++|..
T Consensus 143 Dl~~~~~~~~~~~~---~~~~~v~--~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~ 197 (205)
T 1gwn_A 143 DLRTDVSTLVELSN---HRQTPVS--YDQGANMAKQIGAATYIECSALQSENSVRDIFHV 197 (205)
T ss_dssp GGGGCHHHHHHHHT---TTCCCCC--HHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHH
T ss_pred hhccchhhhhhhcc---cccCCCC--HHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHH
Confidence 99752110000000 0000000 111111111122 568899998 68999999964
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.6e-15 Score=122.87 Aligned_cols=121 Identities=14% Similarity=0.166 Sum_probs=66.1
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHH-HHHHHHHhCCCCCCCeEEEEeeC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL-KLFDSICNNKWFTDTSIILFLNK 178 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~-~~~~~i~~~~~~~~~piil~~NK 178 (262)
..+.+.+||++|++.++..|..|+++++++|+|+|+++ ..++.+.. .|+..+... ..++|++||+||
T Consensus 80 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~piilv~nK 147 (214)
T 2j1l_A 80 KPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTS----------PNSFDNIFNRWYPEVNHF--CKKVPIIVVGCK 147 (214)
T ss_dssp EEEEEEEEEC---------------CEEEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--CSSCCEEEEEEC
T ss_pred EEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEEC
Confidence 34679999999999999999999999999999999998 56676665 455444432 257899999999
Q ss_pred CchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeehh
Q psy6623 179 KDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 179 ~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~~ 237 (262)
+|+..++-....+... ....-. ..-.........+ .+++|||++|.||+++|+.
T Consensus 148 ~Dl~~~~~~~~~~~~~---~~~~v~--~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~ 202 (214)
T 2j1l_A 148 TDLRKDKSLVNKLRRN---GLEPVT--YHRGQEMARSVGAVAYLECSARLHDNVHAVFQE 202 (214)
T ss_dssp GGGGSCHHHHHHHHHT---TCCCCC--HHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHH
T ss_pred hhhhccchhhhhhccc---ccCccc--HHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHH
Confidence 9997532110000000 000000 1111111112333 6889999999999999963
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=6.8e-15 Score=121.46 Aligned_cols=119 Identities=14% Similarity=0.114 Sum_probs=79.4
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHH-HHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL-KLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~-~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+.. .|+..+.... .+.|++|++||+
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~ 144 (204)
T 4gzl_A 77 PVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVS----------PASFENVRAKWYPEVRHHC--PNTPIILVGTKL 144 (204)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHHC--SSCCEEEEEECH
T ss_pred EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhC--CCCCEEEEEech
Confidence 4667799999999999999999999999999999998 66777765 4444444322 579999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhcc-ceeecccccccceeeeeeh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFD-SICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~-~~~~~tsA~d~~~I~~~f~ 236 (262)
|+..++.....+... .................. ..++++||++|+||.++|+
T Consensus 145 Dl~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 197 (204)
T 4gzl_A 145 DLRDDKDTIEKLKEK-----KLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 197 (204)
T ss_dssp HHHTCHHHHHHHHHT-----TCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHH
T ss_pred hhccchhhhhhhhcc-----ccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHH
Confidence 997543211000000 000000111111111223 3488999999999999995
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-14 Score=116.71 Aligned_cols=115 Identities=16% Similarity=0.138 Sum_probs=80.3
Q ss_pred eEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeE
Q psy6623 93 VEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSI 172 (262)
Q Consensus 93 ~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pi 172 (262)
....+.+++..+.+|||+|++.++..|..++++++++|+|+|+++ ....++...+..+.. .++|+
T Consensus 46 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~-----------~~~~~~~~~l~~~~~----~~~p~ 110 (178)
T 2lkc_A 46 GAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADD-----------GVMPQTVEAINHAKA----ANVPI 110 (178)
T ss_dssp CCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTC-----------CCCHHHHHHHHHHGG----GSCCE
T ss_pred eEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCC-----------CCcHHHHHHHHHHHh----CCCCE
Confidence 334556677889999999999999999999999999999999886 334555566555432 36899
Q ss_pred EEEeeCCchhhh---hhccC-CCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 173 ILFLNKKDLFEE---KIKKS-PLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 173 il~~NK~Dl~~~---kl~~~-~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+|++||+|+... ++... .....+++-.| ..+.+++|||++|.||+++|+.
T Consensus 111 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~Sa~~~~gv~~l~~~ 164 (178)
T 2lkc_A 111 IVAINKMDKPEANPDRVMQELMEYNLVPEEWG---------------GDTIFCKLSAKTKEGLDHLLEM 164 (178)
T ss_dssp EEEEETTTSSCSCHHHHHHHHTTTTCCBTTTT---------------SSEEEEECCSSSSHHHHHHHHH
T ss_pred EEEEECccCCcCCHHHHHHHHHhcCcChhHcC---------------CcccEEEEecCCCCCHHHHHHH
Confidence 999999998642 11000 00000000000 1256889999999999999964
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-14 Score=114.16 Aligned_cols=108 Identities=13% Similarity=0.084 Sum_probs=81.7
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+.......+.|++|++||+|
T Consensus 50 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~D 119 (166)
T 2ce2_X 50 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINN----------TKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSD 119 (166)
T ss_dssp EEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTT
T ss_pred EEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchh
Confidence 4678999999999999999999999999999999998 566677766766665543335799999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+.... .. ...+........+.++++||++|.||.++|+
T Consensus 120 l~~~~-----~~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 157 (166)
T 2ce2_X 120 LAART-----VE-------------SRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157 (166)
T ss_dssp CSCCC-----SC-------------HHHHHHHHHHHTCCEEEECTTTCTTHHHHHH
T ss_pred hhhcc-----cC-------------HHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence 86411 00 1111111122456788999999999999995
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.52 E-value=7.2e-15 Score=119.84 Aligned_cols=116 Identities=12% Similarity=0.058 Sum_probs=81.3
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC-CCCCCeEEEEeeC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK-WFTDTSIILFLNK 178 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~-~~~~~piil~~NK 178 (262)
..+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+.... ...++|++|++||
T Consensus 54 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK 123 (199)
T 2gf0_A 54 SVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTS----------KQSLEELGPIYKLIVQIKGSVEDIPVMLVGNK 123 (199)
T ss_dssp EEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTC----------HHHHHTTHHHHHHHHHHHSCGGGSCEEEEEEC
T ss_pred EEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 34679999999999999999999999999999999998 455555444544443321 1346899999999
Q ss_pred CchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhcc
Q psy6623 179 KDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK 245 (262)
Q Consensus 179 ~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~ 245 (262)
+|+..... . ............+.++++||++|.||.++|+ +|...+.
T Consensus 124 ~Dl~~~~~-----~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~--~l~~~~~ 170 (199)
T 2gf0_A 124 CDETQREV-----D-------------TREAQAVAQEWKCAFMETSAKMNYNVKELFQ--ELLTLET 170 (199)
T ss_dssp TTCSSCSS-----C-------------HHHHHHHHHHHTCEEEECBTTTTBSHHHHHH--HHHHHCS
T ss_pred ccCCcccc-----C-------------HHHHHHHHHHhCCeEEEEecCCCCCHHHHHH--HHHHHHh
Confidence 99864110 0 1111111122346788999999999999995 4444443
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-14 Score=116.55 Aligned_cols=109 Identities=13% Similarity=0.051 Sum_probs=70.4
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.......++|++|++||+|
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~D 137 (190)
T 3con_A 68 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINN----------SKSFADINLYREQIKRVKDSDDVPMVLVGNKCD 137 (190)
T ss_dssp EEEEEEEECCC-----------CTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTT
T ss_pred EEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcC----------HHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCc
Confidence 3679999999999999999999999999999999998 566666666666655433335789999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+..... . ..-+.+......+.++++||++|.||.++|+.
T Consensus 138 l~~~~~---------------~---~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 176 (190)
T 3con_A 138 LPTRTV---------------D---TKQAHELAKSYGIPFIETSAKTRQGVEDAFYT 176 (190)
T ss_dssp CSCCCS---------------C---HHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred CCcccC---------------C---HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 864110 0 11111112224567889999999999999963
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-14 Score=116.41 Aligned_cols=106 Identities=10% Similarity=0.016 Sum_probs=72.6
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHH---HHHHHhCCCCCCCeEEEEee
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKL---FDSICNNKWFTDTSIILFLN 177 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~---~~~i~~~~~~~~~piil~~N 177 (262)
.+.+++||++|++. ..|+++++++|+|+|+++ ..++.....| +..+.. ....++|++|++|
T Consensus 53 ~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~----------~~s~~~~~~~~~~i~~~~~-~~~~~~piilv~n 116 (178)
T 2iwr_A 53 THLVLIREEAGAPD-----AKFSGWADAVIFVFSLED----------ENSFQAVSRLHGQLSSLRG-EGRGGLALALVGT 116 (178)
T ss_dssp EEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHC-SSSCCCEEEEEEE
T ss_pred EEEEEEEECCCCch-----hHHHHhCCEEEEEEECcC----------HHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEE
Confidence 46789999999986 468899999999999998 5566665554 444432 2235799999999
Q ss_pred CCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehh
Q psy6623 178 KKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 178 K~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+|+..+. .... . .+-+...... ..+.+++|||++|.||+++|+.
T Consensus 117 K~Dl~~~~--~~~v-----------~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~ 162 (178)
T 2iwr_A 117 QDRISASS--PRVV-----------G--DARARALXADMKRCSYYETXATYGLNVDRVFQE 162 (178)
T ss_dssp CTTCBTTB--CCCS-----------C--HHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHH
T ss_pred Cccccccc--cCcC-----------C--HHHHHHHHHhhcCCeEEEEeccccCCHHHHHHH
Confidence 99985311 0000 0 1111111111 2467889999999999999964
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.9e-14 Score=116.74 Aligned_cols=110 Identities=16% Similarity=0.163 Sum_probs=77.4
Q ss_pred ccceeeeecCCccc-cchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 101 NLNFKLFDVGGQRS-ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~-~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+.+.+||++|++. ++.++..|+++++++|+|+|+++ ..++.....|+..+.......++|++|++||+
T Consensus 55 ~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~----------~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~ 124 (192)
T 2cjw_A 55 SATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITD----------RASFEKASELRIQLRRARQTEDIPIILVGNKS 124 (192)
T ss_dssp EEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHTTTSCCCEEEEEECT
T ss_pred EEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhhCCCCCeEEEEEech
Confidence 35678999999987 67788999999999999999998 67777777776666543223578999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+..++... .. +..... ....+.+++|||++|.||.++|..
T Consensus 125 Dl~~~r~v~--~~------------~~~~~a---~~~~~~~~e~SA~~g~~v~~lf~~ 165 (192)
T 2cjw_A 125 DLVRXREVS--VS------------EGRAXA---VVFDXKFIETSAAVQHNVKELFEG 165 (192)
T ss_dssp TCGGGCCSC--HH------------HHHHHH---HHTTCEEEECBTTTTBSHHHHHHH
T ss_pred hhhcccccc--HH------------HHHHHH---HHhCCceEEeccccCCCHHHHHHH
Confidence 986532110 00 011111 113456789999999999999964
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.8e-15 Score=120.80 Aligned_cols=124 Identities=16% Similarity=0.154 Sum_probs=82.0
Q ss_pred ecccceeEEEEee-------eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCccc-ccHHHHHHHH
Q psy6623 87 VKTTGIVEVHFSF-------KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETT-NRMQESLKLF 158 (262)
Q Consensus 87 ~pT~Gi~~~~~~~-------~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~-~~l~e~~~~~ 158 (262)
.||+|+......+ +.+.+.+||++|++.++.+|..|+++++++++|+|+++ . .++.....|+
T Consensus 34 ~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~s~~~~~~~~ 103 (184)
T 2zej_A 34 SATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSK----------GQAEVDAMKPWL 103 (184)
T ss_dssp ---CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGG----------CHHHHHTHHHHH
T ss_pred ceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCc----------chhHHHHHHHHH
Confidence 5677766544432 36789999999999999999999999999999999997 3 2455555666
Q ss_pred HHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccc----eeecccccccc-eee
Q psy6623 159 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDS----ICNNKWFTDTS-IIL 232 (262)
Q Consensus 159 ~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~----~~~~tsA~d~~-~I~ 232 (262)
..+... ..++|++|++||+|+..++..... ..-....+.. ..+ .+++|||+++. ++.
T Consensus 104 ~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~ 166 (184)
T 2zej_A 104 FNIKAR--ASSSPVILVGTHLDVSDEKQRKAC---------------MSKITKELLNKRGFPAIRDYHFVNATEESDALA 166 (184)
T ss_dssp HHHHHH--CTTCEEEEEEECGGGCCHHHHHHH---------------HHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHH
T ss_pred HHHHhh--CCCCcEEEEEECCCcccchhhHHH---------------HHHHHHHHHHhcCCcchhheEEEecccCchhHH
Confidence 655432 247899999999999754321100 0011111211 223 27899999996 888
Q ss_pred eeehh
Q psy6623 233 FLNKK 237 (262)
Q Consensus 233 ~~f~~ 237 (262)
++++.
T Consensus 167 ~l~~~ 171 (184)
T 2zej_A 167 KLRKT 171 (184)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88864
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.50 E-value=3.1e-14 Score=125.07 Aligned_cols=117 Identities=13% Similarity=0.002 Sum_probs=79.1
Q ss_pred ecccceeEEEEee-eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccc-cHHHHHHHHHHHHhC
Q psy6623 87 VKTTGIVEVHFSF-KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTN-RMQESLKLFDSICNN 164 (262)
Q Consensus 87 ~pT~Gi~~~~~~~-~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~-~l~e~~~~~~~i~~~ 164 (262)
.||+|.... +.+ .+-++.+||+ |++++.+|..||++++++|+|+|+++ .. ++.....|+..+..
T Consensus 48 ~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~----------~~~s~~~l~~~l~~~~~- 113 (301)
T 1u0l_A 48 KIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKM----------PETSTYIIDKFLVLAEK- 113 (301)
T ss_dssp CCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSST----------TCCCHHHHHHHHHHHHH-
T ss_pred CCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCC----------CCCCHHHHHHHHHHHHH-
Confidence 466664332 222 2237999999 99999999999999999999999997 33 33333344443322
Q ss_pred CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 165 KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.++|++||+||+||..++.. ... .++. +.+... +.+++|||++|.||+++|..
T Consensus 114 ---~~~piilv~NK~DL~~~~~v-~~~--------------~~~~-~~~~~~-~~~~~~SAktg~gv~~lf~~ 166 (301)
T 1u0l_A 114 ---NELETVMVINKMDLYDEDDL-RKV--------------RELE-EIYSGL-YPIVKTSAKTGMGIEELKEY 166 (301)
T ss_dssp ---TTCEEEEEECCGGGCCHHHH-HHH--------------HHHH-HHHTTT-SCEEECCTTTCTTHHHHHHH
T ss_pred ---CCCCEEEEEeHHHcCCchhH-HHH--------------HHHH-HHHhhh-CcEEEEECCCCcCHHHHHHH
Confidence 37999999999999653211 000 1121 222222 66889999999999999963
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.3e-15 Score=123.86 Aligned_cols=121 Identities=15% Similarity=0.129 Sum_probs=78.5
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHH-HHHHHHHhCCCCCCCeEEEEeeC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL-KLFDSICNNKWFTDTSIILFLNK 178 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~-~~~~~i~~~~~~~~~piil~~NK 178 (262)
..+.+++||++|++.++..|..++++++++|+|+|+++ ..++.+.. .|+..+... ..++|++|++||
T Consensus 76 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~----------~~s~~~~~~~~~~~l~~~--~~~~piilv~NK 143 (204)
T 3th5_A 76 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVS----------PASFENVRAKWYPEVRHH--CPNTPIILVGTK 143 (204)
Confidence 34678899999999999999999999999999999998 56666665 344333322 237899999999
Q ss_pred CchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeehh
Q psy6623 179 KDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 179 ~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~~ 237 (262)
+|+..++.....+... ...... ............+ .+++|||++|+||+++|+.
T Consensus 144 ~Dl~~~~~~~~~~~~~---~~~~v~--~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~ 198 (204)
T 3th5_A 144 LDLRDDKDTIEKLKEK---KLTPIT--YPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198 (204)
Confidence 9997543111111000 000000 0001111111223 5788999999999999963
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-13 Score=113.42 Aligned_cols=120 Identities=14% Similarity=0.121 Sum_probs=77.4
Q ss_pred eccceeeeecCCccccchh-h--hccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEe
Q psy6623 100 KNLNFKLFDVGGQRSERKK-W--IHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFL 176 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~-w--~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~ 176 (262)
+.+.+++||++|++.++.. | ..||++++++|+|+|+++- ..+.+.....++..+.. ...++|++||+
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~--------~~~~~~~~~~~l~~~~~--~~~~~piilv~ 136 (196)
T 3llu_A 67 SFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDD--------YMEALTRLHITVSKAYK--VNPDMNFEVFI 136 (196)
T ss_dssp TSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSC--------CHHHHHHHHHHHHHHHH--HCTTCEEEEEE
T ss_pred CeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCc--------hHHHHHHHHHHHHHHHh--cCCCCcEEEEE
Confidence 4588999999999998665 4 8999999999999999971 11445555555555532 23579999999
Q ss_pred eCCchhhhhhccCCCcccCCCCCCCCcch-hHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 177 NKKDLFEEKIKKSPLTICFPEYAGKRPGE-RNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 177 NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~-~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
||+|+..+.......... ...+ ..+.........+.+++|||++ +||.++|..
T Consensus 137 nK~Dl~~~~~~~~~~~~v-------~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~ 190 (196)
T 3llu_A 137 HKVDGLSDDHKIETQRDI-------HQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSK 190 (196)
T ss_dssp ECGGGSCHHHHHHHHHHH-------HHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHH
T ss_pred eccccCchhhhhHHHhHH-------HHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHH
Confidence 999986421100000000 0000 1111111112457889999999 999999963
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-14 Score=123.85 Aligned_cols=108 Identities=10% Similarity=0.025 Sum_probs=78.5
Q ss_pred eccceeeee-----------------------cCCccccchhhhcccc---------------------CCCEEEEeeec
Q psy6623 100 KNLNFKLFD-----------------------VGGQRSERKKWIHCFE---------------------DVTAIIFCVAM 135 (262)
Q Consensus 100 ~~~~~~i~D-----------------------~~Gq~~~r~~w~~~f~---------------------~~~~iIfv~dl 135 (262)
..+.+++|| ++||++++.+|..||+ +++++|+|+|+
T Consensus 93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~ 172 (255)
T 3c5h_A 93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV 172 (255)
T ss_dssp ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence 457899999 9999999999999998 89999999999
Q ss_pred cccccccccCccc--ccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHh
Q psy6623 136 SEYDQVLHEDETT--NRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESL 213 (262)
Q Consensus 136 s~~d~~~~e~~~~--~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f 213 (262)
++ . .++.....|+..+.......++|++|++||+|+..++.. +-.....
T Consensus 173 t~----------~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v-------------------~~~~~~~ 223 (255)
T 3c5h_A 173 SR----------GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI-------------------RDAHTFA 223 (255)
T ss_dssp BC--------------CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH-------------------HHHHHHH
T ss_pred CC----------CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH-------------------HHHHHHH
Confidence 98 5 677777777776654322247999999999999643211 0111111
Q ss_pred hh-ccceeecccccccceeeeeeh
Q psy6623 214 KL-FDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 214 ~~-~~~~~~~tsA~d~~~I~~~f~ 236 (262)
.. ..+.+++|||++|.||.++|+
T Consensus 224 ~~~~~~~~~e~SAk~g~gv~elf~ 247 (255)
T 3c5h_A 224 LSKKNLQVVETSARSNVNVDLAFS 247 (255)
T ss_dssp HTSSSCCEEECBTTTTBSHHHHHH
T ss_pred HhcCCCeEEEEECCCCCCHHHHHH
Confidence 11 246688999999999999995
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=9.8e-14 Score=122.13 Aligned_cols=120 Identities=13% Similarity=0.120 Sum_probs=79.0
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHH-HHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL-KLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~-~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+.+.+||++|++.++..|..|+++++++|+|+|+++ ..++.+.. .|+..+... ..++|++|++||+
T Consensus 202 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~ 269 (332)
T 2wkq_A 202 PVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVS----------PASFHHVRAKWYPEVRHH--CPNTPIILVGTKL 269 (332)
T ss_dssp EEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--CTTSCEEEEEECH
T ss_pred EEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhh--CCCCcEEEEEEch
Confidence 4567799999999999999999999999999999998 56676665 344444332 2379999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~~ 237 (262)
|+..+.-....+... ...... ............+ .+++|||++|.||.++|+.
T Consensus 270 Dl~~~~~~~~~~~~~--~~~~v~---~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 323 (332)
T 2wkq_A 270 DLRDDKDTIEKLKEK--KLTPIT---YPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 323 (332)
T ss_dssp HHHTCHHHHHHHHHT--TCCCCC---HHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHH
T ss_pred hcccccchhhhcccc--cccccc---HHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHH
Confidence 996532110000000 000000 1111111111333 6889999999999999963
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-13 Score=120.30 Aligned_cols=125 Identities=21% Similarity=0.283 Sum_probs=87.7
Q ss_pred ecccceeEEEEee-eccceeeeecCCcccc-----chhhhccccCCCEEEEeeeccccccccccCcccccHHHH---HHH
Q psy6623 87 VKTTGIVEVHFSF-KNLNFKLFDVGGQRSE-----RKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQES---LKL 157 (262)
Q Consensus 87 ~pT~Gi~~~~~~~-~~~~~~i~D~~Gq~~~-----r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~---~~~ 157 (262)
.+|+|+....+.+ +++.+.+||++|++.+ +..|..++++++++|+|+|+++ ..++.+. ..+
T Consensus 36 ~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~----------~~s~~~l~~~~~~ 105 (307)
T 3r7w_A 36 GATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVES----------TEVLKDIEIFAKA 105 (307)
T ss_dssp CCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTC----------SCHHHHHHHHHHH
T ss_pred CCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCC----------hhhHHHHHHHHHH
Confidence 5788888777776 5789999999999999 8899999999999999999998 4555544 344
Q ss_pred HHHHHhCCCCCCCeEEEEeeCCchhh--hhhccCCCcccCCCCCCCCcchhHHHHHHhhhc---cceeecccccccceee
Q psy6623 158 FDSICNNKWFTDTSIILFLNKKDLFE--EKIKKSPLTICFPEYAGKRPGERNRMQESLKLF---DSICNNKWFTDTSIIL 232 (262)
Q Consensus 158 ~~~i~~~~~~~~~piil~~NK~Dl~~--~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~---~~~~~~tsA~d~~~I~ 232 (262)
+..+... ..++|++|++||+|+.. ++....... ..-+.+..... .+.+++|||++ .++.
T Consensus 106 l~~l~~~--~~~~piilv~NK~Dl~~~~~r~~~~~v~-------------~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~ 169 (307)
T 3r7w_A 106 LKQLRKY--SPDAKIFVLLHKMDLVQLDKREELFQIM-------------MKNLSETSSEFGFPNLIGFPTSIWD-ESLY 169 (307)
T ss_dssp HHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHH-------------HHHHHHHHHTTTCCSCEEEECCTTS-SHHH
T ss_pred HHHHHHh--CCCCeEEEEEecccccchhhhhHHHHHH-------------HHHHHHHHHHcCCCCeEEEEeeecC-ChHH
Confidence 4444432 34799999999999975 221000000 01111111222 37889999999 8888
Q ss_pred eeehh
Q psy6623 233 FLNKK 237 (262)
Q Consensus 233 ~~f~~ 237 (262)
++|..
T Consensus 170 e~~~~ 174 (307)
T 3r7w_A 170 KAWSQ 174 (307)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88864
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.6e-13 Score=107.12 Aligned_cols=109 Identities=18% Similarity=0.117 Sum_probs=75.5
Q ss_pred eEEEEeeeccceeeeecCCccccc------hhhhcccc--CCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 93 VEVHFSFKNLNFKLFDVGGQRSER------KKWIHCFE--DVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 93 ~~~~~~~~~~~~~i~D~~Gq~~~r------~~w~~~f~--~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
....+.+++..+++|||+|++.++ .++..|++ +++++++|+|.++ ..+. ..++..+..
T Consensus 41 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~----------~~~~---~~~~~~~~~- 106 (165)
T 2wji_A 41 KEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA----------LERN---LYLTLQLME- 106 (165)
T ss_dssp CEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTC----------HHHH---HHHHHHHHH-
T ss_pred eEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCc----------hhHh---HHHHHHHHh-
Confidence 344455667889999999999876 44577776 8999999999987 2222 334444443
Q ss_pred CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 165 KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
.++|++|++||+|+..++-.... ...+.+. ..+.+++|||++|+||+++|+
T Consensus 107 ---~~~p~ilv~nK~Dl~~~~~~~~~---------------~~~~~~~---~~~~~~~~SA~~~~~v~~l~~ 157 (165)
T 2wji_A 107 ---MGANLLLALNKMDLAKSLGIEID---------------VDKLEKI---LGVKVVPLSAAKKMGIEELKK 157 (165)
T ss_dssp ---TTCCEEEEEECHHHHHHTTCCCC---------------HHHHHHH---HTSCEEECBGGGTBSHHHHHH
T ss_pred ---cCCCEEEEEEchHhccccChhhH---------------HHHHHHH---hCCCEEEEEcCCCCCHHHHHH
Confidence 26899999999999764311110 1112221 235688999999999999995
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.5e-13 Score=105.78 Aligned_cols=108 Identities=17% Similarity=0.046 Sum_probs=75.0
Q ss_pred eeEEEEeeeccceeeeecCCccc-------cchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 92 IVEVHFSFKNLNFKLFDVGGQRS-------ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 92 i~~~~~~~~~~~~~i~D~~Gq~~-------~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
.....+..++..+.+||++|+.. ++..|..++++++++|+|+|+++ . +.....++..++..
T Consensus 39 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~----------~--~~~~~~~~~~~~~~ 106 (161)
T 2dyk_A 39 LKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRA----------E--LTQADYEVAEYLRR 106 (161)
T ss_dssp CEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSS----------C--CCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCC----------c--ccHhHHHHHHHHHh
Confidence 44455666777899999999987 46678889999999999999986 1 11112223333322
Q ss_pred CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeeh
Q psy6623 165 KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~ 236 (262)
.+.|+++++||+|+..++ ....+ +. ...+ .++++||++|.||+++|+
T Consensus 107 ---~~~p~ilv~nK~Dl~~~~---~~~~~--------------~~-----~~~~~~~~~~Sa~~~~gv~~l~~ 154 (161)
T 2dyk_A 107 ---KGKPVILVATKVDDPKHE---LYLGP--------------LY-----GLGFGDPIPTSSEHARGLEELLE 154 (161)
T ss_dssp ---HTCCEEEEEECCCSGGGG---GGCGG--------------GG-----GGSSCSCEECBTTTTBSHHHHHH
T ss_pred ---cCCCEEEEEECcccccch---HhHHH--------------HH-----hCCCCCeEEEecccCCChHHHHH
Confidence 368999999999997642 11111 11 1123 478999999999999995
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1e-12 Score=107.70 Aligned_cols=123 Identities=11% Similarity=0.111 Sum_probs=84.9
Q ss_pred eccccee--EEEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIV--EVHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~--~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|.. ...+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.
T Consensus 35 ~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~ 104 (199)
T 2f9l_A 35 KSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAK----------HLTYENVERWLKELR 104 (199)
T ss_dssp -CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 4555543 23444544 678899999999999999999999999999999987 455555555655544
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.. ...+.|+++++||+|+...+-.. ..-.+.......+.++.|||+++.|+.++|+.
T Consensus 105 ~~-~~~~~~i~~v~nK~Dl~~~~~~~-----------------~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~ 161 (199)
T 2f9l_A 105 DH-ADSNIVIMLVGNKSDLRHLRAVP-----------------TDEARAFAEKNNLSFIETSALDSTNVEEAFKN 161 (199)
T ss_dssp HH-SCTTCEEEEEEECTTCGGGCCSC-----------------HHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred Hh-cCCCCeEEEEEECcccccccCcC-----------------HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 32 22468999999999996532100 11111222224566777999999999999964
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.36 E-value=3.8e-13 Score=108.00 Aligned_cols=115 Identities=13% Similarity=0.250 Sum_probs=76.4
Q ss_pred ceeEEEEeeeccceeeeecCCccccch---------hhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHH
Q psy6623 91 GIVEVHFSFKNLNFKLFDVGGQRSERK---------KWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSI 161 (262)
Q Consensus 91 Gi~~~~~~~~~~~~~i~D~~Gq~~~r~---------~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i 161 (262)
+.....+.+++..+.+|||+|++.... .| .++++++++|+|+|+++ ..++. ...++..+
T Consensus 41 ~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~-~~~~~ad~~i~v~D~~~----------~~s~~-~~~~~~~~ 108 (172)
T 2gj8_A 41 DVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAW-QEIEQADRVLFMVDGTT----------TDAVD-PAEIWPEF 108 (172)
T ss_dssp SCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHH-HHHHTCSEEEEEEETTT----------CCCCS-HHHHCHHH
T ss_pred ceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHH-HHHHhCCEEEEEEECCC----------CCCHH-HHHHHHHH
Confidence 344455666777899999999975321 22 46899999999999997 23322 23455444
Q ss_pred HhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHH
Q psy6623 162 CNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFE 241 (262)
Q Consensus 162 ~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~ 241 (262)
.+. ...++|++|++||+|+..+.. .+.. ...+.+++|||++|+||.++|+ +|.
T Consensus 109 ~~~-~~~~~p~ilv~NK~Dl~~~~~---~~~~---------------------~~~~~~~~~SA~~g~gv~~l~~--~l~ 161 (172)
T 2gj8_A 109 IAR-LPAKLPITVVRNKADITGETL---GMSE---------------------VNGHALIRLSARTGEGVDVLRN--HLK 161 (172)
T ss_dssp HHH-SCTTCCEEEEEECHHHHCCCC---EEEE---------------------ETTEEEEECCTTTCTTHHHHHH--HHH
T ss_pred HHh-cccCCCEEEEEECccCCcchh---hhhh---------------------ccCCceEEEeCCCCCCHHHHHH--HHH
Confidence 432 224789999999999964211 0100 0225578999999999999995 444
Q ss_pred hhc
Q psy6623 242 EKI 244 (262)
Q Consensus 242 ~~i 244 (262)
+.+
T Consensus 162 ~~~ 164 (172)
T 2gj8_A 162 QSM 164 (172)
T ss_dssp HHC
T ss_pred HHh
Confidence 443
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.7e-13 Score=125.75 Aligned_cols=105 Identities=11% Similarity=0.166 Sum_probs=74.3
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
++++.+||++|++.++..+..++++++++|+|+|+++ .+++..++..+.... .+.|++|++||+|
T Consensus 97 ~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~----------~~~~~~~~~~l~~~~-----~~~pvilV~NK~D 161 (535)
T 3dpu_A 97 ECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRT----------DSNKHYWLRHIEKYG-----GKSPVIVVMNKID 161 (535)
T ss_dssp TCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGG----------GGGHHHHHHHHHHHS-----SSCCEEEEECCTT
T ss_pred eEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCC----------chhHHHHHHHHHHhC-----CCCCEEEEEECCC
Confidence 5789999999999999999999999999999999987 344555544444432 3689999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+..++- +. .+.+.+.+....+.+++|||++|.||+++|..
T Consensus 162 l~~~~~----v~-------------~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~ 201 (535)
T 3dpu_A 162 ENPSYN----IE-------------QKKINERFPAIENRFHRISCKNGDGVESIAKS 201 (535)
T ss_dssp TCTTCC----CC-------------HHHHHHHCGGGTTCEEECCC-----CTTHHHH
T ss_pred cccccc----cC-------------HHHHHHHHHhcCCceEEEecCcccCHHHHHHH
Confidence 865321 00 22334444444566899999999999999964
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-12 Score=108.68 Aligned_cols=122 Identities=19% Similarity=0.195 Sum_probs=79.0
Q ss_pred ccceeEEEEeeeccceeeeecCCc------ccc---chhhhccccCCCEEEEeeeccccccccccCccccc--HHHHHHH
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQ------RSE---RKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNR--MQESLKL 157 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq------~~~---r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~--l~e~~~~ 157 (262)
|..+....+..++..+.+|||+|+ +.. ...+..+++.++++|+|+|+++ ..+ ......+
T Consensus 63 t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~ 132 (228)
T 2qu8_A 63 TKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISE----------QCGLTIKEQINL 132 (228)
T ss_dssp --CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTC----------TTSSCHHHHHHH
T ss_pred ceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEeccc----------ccCcchHHHHHH
Confidence 445555556667789999999999 331 1234456889999999999997 223 3445666
Q ss_pred HHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-cc--ceeecccccccceeeee
Q psy6623 158 FDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FD--SICNNKWFTDTSIILFL 234 (262)
Q Consensus 158 ~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~--~~~~~tsA~d~~~I~~~ 234 (262)
+..+... ..+.|++||+||+|+...+ .+.. +.......+.. .. +.+++|||++|+||.++
T Consensus 133 ~~~l~~~--~~~~piilv~nK~Dl~~~~----~~~~-----------~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 195 (228)
T 2qu8_A 133 FYSIKSV--FSNKSIVIGFNKIDKCNMD----SLSI-----------DNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQA 195 (228)
T ss_dssp HHHHHTC--C-CCCEEEEEECGGGCC------CCCH-----------HHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHH
T ss_pred HHHHHHh--hcCCcEEEEEeCcccCCch----hhHH-----------HHHHHHHHHHHhcCCCceEEEEecccCCCHHHH
Confidence 7666542 3579999999999996532 1100 01111122222 22 67889999999999999
Q ss_pred ehh
Q psy6623 235 NKK 237 (262)
Q Consensus 235 f~~ 237 (262)
|+.
T Consensus 196 ~~~ 198 (228)
T 2qu8_A 196 KIT 198 (228)
T ss_dssp HHH
T ss_pred HHH
Confidence 964
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.8e-12 Score=103.85 Aligned_cols=122 Identities=10% Similarity=0.084 Sum_probs=83.3
Q ss_pred eccccee--EEEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIV--EVHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~--~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|.. ...+.+++ +.+++||++|+++++..|..++++++++|+|+|+++ ..++.....|+..+.
T Consensus 59 ~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~ 128 (191)
T 1oix_A 59 KSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAK----------HLTYENVERWLKELR 128 (191)
T ss_dssp CCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 4555643 33444544 567789999999999999999999999999999987 444544444555443
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
.. ...+.|+++++||+|+...+-.. ....+.......+.+..|||+|+.++.++|+
T Consensus 129 ~~-~~~~~~i~~v~nK~Dl~~~~~~~-----------------~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~ 184 (191)
T 1oix_A 129 DH-ADSNIVIMLVGNKSDLRHLRAVP-----------------TDEARAFAEKNGLSFIETSALDSTNVEAAFQ 184 (191)
T ss_dssp HH-SCTTCEEEEEEECGGGGGGCCSC-----------------HHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred Hh-cCCCCcEEEEEECcccccccccC-----------------HHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 32 22468999999999996532100 1111222222456677899999999999995
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.1e-12 Score=103.24 Aligned_cols=116 Identities=17% Similarity=0.122 Sum_probs=79.9
Q ss_pred eEEEEeeeccceeeeecCCccccc------hhhhcccc--CCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 93 VEVHFSFKNLNFKLFDVGGQRSER------KKWIHCFE--DVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 93 ~~~~~~~~~~~~~i~D~~Gq~~~r------~~w~~~f~--~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
....+.+++..+.+|||+|++.++ .+|..|++ +++++++|+|.+++ .....++..+..
T Consensus 45 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-------------~~~~~~~~~~~~- 110 (188)
T 2wjg_A 45 KEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL-------------ERNLYLTLQLME- 110 (188)
T ss_dssp EEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGH-------------HHHHHHHHHHHT-
T ss_pred eEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhH-------------HHHHHHHHHHHh-
Confidence 444566678899999999999885 56788885 49999999998862 223444444443
Q ss_pred CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 165 KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
.+.|++|++||+|+..++-.... ...+.+. ..+.++++||+++.||.++|+ ++...+
T Consensus 111 ---~~~piilv~nK~Dl~~~~~~~~~---------------~~~~~~~---~~~~~~~~Sa~~~~~v~~l~~--~i~~~~ 167 (188)
T 2wjg_A 111 ---MGANLLLALNKMDLAKSLGIEID---------------VDKLEKI---LGVKVVPLSAAKKMGIEELKK--AISIAV 167 (188)
T ss_dssp ---TTCCEEEEEECHHHHHHTTCCCC---------------HHHHHHH---HTSCEEECBGGGTBSHHHHHH--HHHHHH
T ss_pred ---cCCCEEEEEEhhhccccccchHH---------------HHHHHHH---hCCCeEEEEecCCCCHHHHHH--HHHHHH
Confidence 36899999999999764311110 1122221 236688999999999999995 444444
Q ss_pred c
Q psy6623 245 K 245 (262)
Q Consensus 245 ~ 245 (262)
.
T Consensus 168 ~ 168 (188)
T 2wjg_A 168 K 168 (188)
T ss_dssp T
T ss_pred H
Confidence 3
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.3e-13 Score=112.89 Aligned_cols=74 Identities=20% Similarity=0.322 Sum_probs=63.1
Q ss_pred eccceeeeecCCccccchhhhccccC----CCEEEEeeecc-ccccccccCcccccHHHHHHHHHHHHhCC---CCCCCe
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFED----VTAIIFCVAMS-EYDQVLHEDETTNRMQESLKLFDSICNNK---WFTDTS 171 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~----~~~iIfv~dls-~~d~~~~e~~~~~~l~e~~~~~~~i~~~~---~~~~~p 171 (262)
....+.+||++|++.++..|..|+++ ++++|+|+|++ + ..++.+...++..++... ...++|
T Consensus 53 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~p 122 (218)
T 1nrj_B 53 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVD----------PKKLTTTAEFLVDILSITESSCENGID 122 (218)
T ss_dssp GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSC----------TTCCHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCC----------hHHHHHHHHHHHHHHhcccccccCCCC
Confidence 56789999999999999999999988 89999999999 5 577788888888877542 225799
Q ss_pred EEEEeeCCchhh
Q psy6623 172 IILFLNKKDLFE 183 (262)
Q Consensus 172 iil~~NK~Dl~~ 183 (262)
++|++||+|+..
T Consensus 123 ~ilv~nK~Dl~~ 134 (218)
T 1nrj_B 123 ILIACNKSELFT 134 (218)
T ss_dssp EEEEEECTTSTT
T ss_pred EEEEEEchHhcc
Confidence 999999999965
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.2e-12 Score=104.71 Aligned_cols=111 Identities=9% Similarity=0.038 Sum_probs=75.4
Q ss_pred ccceeeeecCC----------ccccchhhhccccCC---CEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 101 NLNFKLFDVGG----------QRSERKKWIHCFEDV---TAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 101 ~~~~~i~D~~G----------q~~~r~~w~~~f~~~---~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
+..+.+|||+| ++.++..|..|++++ +++|+|+|+++ ..+..+ ..+++.+..
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~-~~~~~~~~~---- 132 (195)
T 1svi_A 68 NDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRH----------APSNDD-VQMYEFLKY---- 132 (195)
T ss_dssp TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTS----------CCCHHH-HHHHHHHHH----
T ss_pred CCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCC----------CCCHHH-HHHHHHHHH----
Confidence 34799999999 888999999999887 99999999987 233332 222222222
Q ss_pred CCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehhhHHHhh
Q psy6623 168 TDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKKDLFEEK 243 (262)
Q Consensus 168 ~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~~lL~~~ 243 (262)
.+.|+++++||+|+..++-.. . ..+.+.+.+.. ..+.++++||++|.||.++|+ +|.+.
T Consensus 133 ~~~p~i~v~nK~Dl~~~~~~~----~-----------~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~--~l~~~ 192 (195)
T 1svi_A 133 YGIPVIVIATKADKIPKGKWD----K-----------HAKVVRQTLNIDPEDELILFSSETKKGKDEAWG--AIKKM 192 (195)
T ss_dssp TTCCEEEEEECGGGSCGGGHH----H-----------HHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHH--HHHHH
T ss_pred cCCCEEEEEECcccCChHHHH----H-----------HHHHHHHHHcccCCCceEEEEccCCCCHHHHHH--HHHHH
Confidence 468999999999996532100 0 01223332322 356788999999999999995 44443
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.27 E-value=7.7e-13 Score=106.75 Aligned_cols=108 Identities=20% Similarity=0.211 Sum_probs=68.7
Q ss_pred ceeeeecCC-----------ccccchhhhccccC-CCEEEEeeeccccccccccCcccccHHHHHHHHHH---------H
Q psy6623 103 NFKLFDVGG-----------QRSERKKWIHCFED-VTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDS---------I 161 (262)
Q Consensus 103 ~~~i~D~~G-----------q~~~r~~w~~~f~~-~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~---------i 161 (262)
.+.+||++| ++.++..|..|+++ ++++++|+++.+ ..++.+....|.. +
T Consensus 45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d----------~~s~~~~~~~~~~~~~~~~~~~~ 114 (190)
T 2cxx_A 45 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVD----------GKAAPEIIKRWEKRGEIPIDVEF 114 (190)
T ss_dssp TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEE----------TTHHHHHHHHHHHTTCCCHHHHH
T ss_pred CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEc----------chhhhhHHHhhhccCccHHHHHH
Confidence 789999999 88899999999987 777666666666 3444433222211 1
Q ss_pred HhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh----ccceeecccccccceeeeeehh
Q psy6623 162 CNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL----FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 162 ~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~----~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.......++|++|++||+|+..++ . . ..+.+.+.+.. ....+++|||++|+||+++|+.
T Consensus 115 ~~~~~~~~~piilv~nK~Dl~~~~--~----~-----------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 177 (190)
T 2cxx_A 115 YQFLRELDIPTIVAVNKLDKIKNV--Q----E-----------VINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNR 177 (190)
T ss_dssp HHHHHHTTCCEEEEEECGGGCSCH--H----H-----------HHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHH
T ss_pred HHHHHhcCCceEEEeehHhccCcH--H----H-----------HHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHH
Confidence 111011468999999999997532 0 0 01222222211 1234689999999999999963
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-11 Score=105.88 Aligned_cols=102 Identities=18% Similarity=0.145 Sum_probs=73.3
Q ss_pred ccceeeeecCCccccc------hhhhcccc--CCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeE
Q psy6623 101 NLNFKLFDVGGQRSER------KKWIHCFE--DVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSI 172 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r------~~w~~~f~--~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pi 172 (262)
+..+.+|||+|+.+++ .++..|+. +++++|+|+|.++ ..+ ...+...+.. .++|+
T Consensus 48 ~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~----------~e~---~~~~~~~l~~----~~~p~ 110 (272)
T 3b1v_A 48 NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATN----------LER---NLYLTTQLIE----TGIPV 110 (272)
T ss_dssp CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGG----------HHH---HHHHHHHHHH----TCSCE
T ss_pred CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCc----------hHh---HHHHHHHHHh----cCCCE
Confidence 7889999999999887 56778886 5999999999987 222 2344444443 36899
Q ss_pred EEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 173 ILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 173 il~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+|++||+|+..++-.... ..-+.+. ..+.+++|||++|+||.++|+.
T Consensus 111 ilv~NK~Dl~~~~~~~~~---------------~~~l~~~---lg~~vi~~SA~~g~gi~el~~~ 157 (272)
T 3b1v_A 111 TIALNMIDVLDGQGKKIN---------------VDKLSYH---LGVPVVATSALKQTGVDQVVKK 157 (272)
T ss_dssp EEEEECHHHHHHTTCCCC---------------HHHHHHH---HTSCEEECBTTTTBSHHHHHHH
T ss_pred EEEEEChhhCCcCCcHHH---------------HHHHHHH---cCCCEEEEEccCCCCHHHHHHH
Confidence 999999999764321110 1112221 2467889999999999999963
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-11 Score=100.15 Aligned_cols=113 Identities=11% Similarity=0.029 Sum_probs=74.6
Q ss_pred eccceeeeecCC----------ccccchhhhccccCC---CEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 100 KNLNFKLFDVGG----------QRSERKKWIHCFEDV---TAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 100 ~~~~~~i~D~~G----------q~~~r~~w~~~f~~~---~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.+..+.+||++| ++.++..+..|++++ +++++|+|.++.. .........++..
T Consensus 66 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~--------~~~~~~~~~~~~~------ 131 (195)
T 3pqc_A 66 VNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPP--------QDSDLMMVEWMKS------ 131 (195)
T ss_dssp ETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC--------CHHHHHHHHHHHH------
T ss_pred ECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCC--------CHHHHHHHHHHHH------
Confidence 356789999999 888899999999876 8999999987611 1111222222222
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehhhHHHhhc
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
.++|++||+||+|+..+.-.. . ..+.+...+.. ..+.++++||++|+||.++|+ +|.+.+
T Consensus 132 -~~~p~i~v~nK~Dl~~~~~~~----~-----------~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~--~l~~~l 192 (195)
T 3pqc_A 132 -LNIPFTIVLTKMDKVKMSERA----K-----------KLEEHRKVFSKYGEYTIIPTSSVTGEGISELLD--LISTLL 192 (195)
T ss_dssp -TTCCEEEEEECGGGSCGGGHH----H-----------HHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHH--HHHHHH
T ss_pred -cCCCEEEEEEChhcCChHHHH----H-----------HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHH--HHHHHh
Confidence 168999999999996421000 0 02223333333 346788999999999999995 455443
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-11 Score=102.68 Aligned_cols=115 Identities=12% Similarity=0.049 Sum_probs=74.8
Q ss_pred eeccceeeeecCC----------ccccchhhhccccC---CCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 99 FKNLNFKLFDVGG----------QRSERKKWIHCFED---VTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 99 ~~~~~~~i~D~~G----------q~~~r~~w~~~f~~---~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
.++..+.+|||+| ++.++..+..|+++ ++++|+|+|.++ .-. .....++..+..
T Consensus 76 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~~-~~~~~~~~~l~~-- 142 (223)
T 4dhe_A 76 AAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARR----------PLT-ELDRRMIEWFAP-- 142 (223)
T ss_dssp TTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTS----------CCC-HHHHHHHHHHGG--
T ss_pred CCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCC----------CCC-HHHHHHHHHHHh--
Confidence 3468899999999 55567777788877 777999999986 111 222333333332
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-------ccceeecccccccceeeeeehhh
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-------FDSICNNKWFTDTSIILFLNKKD 238 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-------~~~~~~~tsA~d~~~I~~~f~~~ 238 (262)
.+.|++||+||+|+....-.... ...+.+.+.. ..+.++++||++|+||.++|+
T Consensus 143 --~~~p~i~v~nK~Dl~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~-- 203 (223)
T 4dhe_A 143 --TGKPIHSLLTKCDKLTRQESINA---------------LRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHA-- 203 (223)
T ss_dssp --GCCCEEEEEECGGGSCHHHHHHH---------------HHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHH--
T ss_pred --cCCCEEEEEeccccCChhhHHHH---------------HHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHH--
Confidence 46899999999999653211000 1222222221 346688999999999999995
Q ss_pred HHHhhcc
Q psy6623 239 LFEEKIK 245 (262)
Q Consensus 239 lL~~~i~ 245 (262)
+|...+.
T Consensus 204 ~l~~~~~ 210 (223)
T 4dhe_A 204 LIESWLR 210 (223)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 4555544
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.4e-11 Score=104.20 Aligned_cols=111 Identities=14% Similarity=0.076 Sum_probs=78.0
Q ss_pred eeEEEEeeeccceeeeecCCccccch----------hhhccc--cCCCEEEEeeeccccccccccCcccccHHHHHHHHH
Q psy6623 92 IVEVHFSFKNLNFKLFDVGGQRSERK----------KWIHCF--EDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFD 159 (262)
Q Consensus 92 i~~~~~~~~~~~~~i~D~~Gq~~~r~----------~w~~~f--~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~ 159 (262)
.....+.+++..+.+|||+|+..++. ++..|+ ++++++|+|+|.++ ..+ ...+..
T Consensus 38 ~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~----------~~~---~~~l~~ 104 (256)
T 3iby_A 38 KKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH----------LER---HLYLTS 104 (256)
T ss_dssp EEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG----------HHH---HHHHHH
T ss_pred EEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC----------chh---HHHHHH
Confidence 44556667788999999999988875 667788 89999999999987 222 233333
Q ss_pred HHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 160 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 160 ~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+.. .+.|++|++||+|+...+-.... ...+.+. ..+.+++|||++|.||.++|+.
T Consensus 105 ~l~~----~~~pvilv~NK~Dl~~~~~~~~~---------------~~~l~~~---lg~~vi~~SA~~g~gi~el~~~ 160 (256)
T 3iby_A 105 QLFE----LGKPVVVALNMMDIAEHRGISID---------------TEKLESL---LGCSVIPIQAHKNIGIPALQQS 160 (256)
T ss_dssp HHTT----SCSCEEEEEECHHHHHHTTCEEC---------------HHHHHHH---HCSCEEECBGGGTBSHHHHHHH
T ss_pred HHHH----cCCCEEEEEEChhcCCcCCcHHH---------------HHHHHHH---cCCCEEEEECCCCCCHHHHHHH
Confidence 3332 26899999999999764311100 1222222 2467899999999999999953
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.6e-11 Score=110.14 Aligned_cols=118 Identities=15% Similarity=0.119 Sum_probs=79.2
Q ss_pred ccceeEEEEeeecc-ceeeeecCCccccchh-------hhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHH
Q psy6623 89 TTGIVEVHFSFKNL-NFKLFDVGGQRSERKK-------WIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDS 160 (262)
Q Consensus 89 T~Gi~~~~~~~~~~-~~~i~D~~Gq~~~r~~-------w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~ 160 (262)
|+......+.+.+. .+.+|||+|+..+..+ +..++++++++|+|+|.+. ......++.+
T Consensus 69 T~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~----------~~~~~~~l~~--- 135 (423)
T 3qq5_A 69 TTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAP----------TPYEDDVVNL--- 135 (423)
T ss_dssp -CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSC----------CHHHHHHHHH---
T ss_pred eeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCC----------hHHHHHHHHH---
Confidence 44455566666665 8999999999887655 4558999999999999843 2333333333
Q ss_pred HHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhh-hccceeecccccccceeeeeehhhH
Q psy6623 161 ICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLK-LFDSICNNKWFTDTSIILFLNKKDL 239 (262)
Q Consensus 161 i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~-~~~~~~~~tsA~d~~~I~~~f~~~l 239 (262)
+... +.|+++|+||+|+..+... .. .+.+. ...+.++++||++|+||+++|+ +
T Consensus 136 l~~~----~~piIvV~NK~Dl~~~~~~--~~------------------~~~l~~~~g~~v~~vSAktg~gI~eL~~--~ 189 (423)
T 3qq5_A 136 FKEM----EIPFVVVVNKIDVLGEKAE--EL------------------KGLYESRYEAKVLLVSALQKKGFDDIGK--T 189 (423)
T ss_dssp HHHT----TCCEEEECCCCTTTTCCCT--HH------------------HHHSSCCTTCCCCCCSSCCTTSTTTHHH--H
T ss_pred HHhc----CCCEEEEEeCcCCCCccHH--HH------------------HHHHHHHcCCCEEEEECCCCCCHHHHHH--H
Confidence 3322 6899999999999753211 01 11111 1235688999999999999995 4
Q ss_pred HHhhcc
Q psy6623 240 FEEKIK 245 (262)
Q Consensus 240 L~~~i~ 245 (262)
|.+.+.
T Consensus 190 L~~~l~ 195 (423)
T 3qq5_A 190 ISEILP 195 (423)
T ss_dssp HHHHSC
T ss_pred HHHhhh
Confidence 555553
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.16 E-value=3.6e-11 Score=103.17 Aligned_cols=111 Identities=19% Similarity=0.149 Sum_probs=78.3
Q ss_pred eeEEEEeeeccceeeeecCCccccchhh------hccc--cCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh
Q psy6623 92 IVEVHFSFKNLNFKLFDVGGQRSERKKW------IHCF--EDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN 163 (262)
Q Consensus 92 i~~~~~~~~~~~~~i~D~~Gq~~~r~~w------~~~f--~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~ 163 (262)
.....+..++..+.+||++|+..++..| ..|+ ++++++|+|+|.++ ..+ .+.++..+..
T Consensus 42 ~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~----------~~~---~~~~~~~l~~ 108 (258)
T 3a1s_A 42 KKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVN----------PEQ---SLYLLLEILE 108 (258)
T ss_dssp EEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTS----------CHH---HHHHHHHHHT
T ss_pred EEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCc----------hhh---HHHHHHHHHh
Confidence 3444555667899999999999888654 5666 58999999999987 222 3345555553
Q ss_pred CCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 164 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 164 ~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.++|++|++||+|+..++-.... ...+.+. ..+.+++|||++|.||.++|+.
T Consensus 109 ----~~~pvilv~NK~Dl~~~~~i~~~---------------~~~l~~~---lg~~vi~~SA~~g~gi~el~~~ 160 (258)
T 3a1s_A 109 ----MEKKVILAMTAIDEAKKTGMKID---------------RYELQKH---LGIPVVFTSSVTGEGLEELKEK 160 (258)
T ss_dssp ----TTCCEEEEEECHHHHHHTTCCBC---------------HHHHHHH---HCSCEEECCTTTCTTHHHHHHH
T ss_pred ----cCCCEEEEEECcCCCCccchHHH---------------HHHHHHH---cCCCEEEEEeeCCcCHHHHHHH
Confidence 26899999999999764311110 1222222 3467889999999999999964
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=4.8e-11 Score=103.22 Aligned_cols=117 Identities=18% Similarity=0.070 Sum_probs=78.4
Q ss_pred eeEEEEeeeccceeeeecCCccccc----------hhhhccc--cCCCEEEEeeeccccccccccCcccccHHHHHHHHH
Q psy6623 92 IVEVHFSFKNLNFKLFDVGGQRSER----------KKWIHCF--EDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFD 159 (262)
Q Consensus 92 i~~~~~~~~~~~~~i~D~~Gq~~~r----------~~w~~~f--~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~ 159 (262)
.....+..++..+.+|||+|+..++ ..+..|+ ++++++|+|+|.++ ..+......++.
T Consensus 40 ~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~----------~~~~~~~~~~l~ 109 (274)
T 3i8s_A 40 RKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN----------LERNLYLTLQLL 109 (274)
T ss_dssp EEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGG----------HHHHHHHHHHHH
T ss_pred EEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCC----------hHHHHHHHHHHH
Confidence 3445566677889999999998877 3345554 79999999999987 333333333332
Q ss_pred HHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhH
Q psy6623 160 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 239 (262)
Q Consensus 160 ~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~l 239 (262)
+. +.|+++++||+|+..++-.... .+.+.+. ..+.++++||++|.||.++|+ .
T Consensus 110 ~~-------~~p~ivv~NK~Dl~~~~~~~~~---------------~~~l~~~---lg~~~i~~SA~~g~gi~el~~--~ 162 (274)
T 3i8s_A 110 EL-------GIPCIVALNMLDIAEKQNIRIE---------------IDALSAR---LGCPVIPLVSTRGRGIEALKL--A 162 (274)
T ss_dssp HH-------TCCEEEEEECHHHHHHTTEEEC---------------HHHHHHH---HTSCEEECCCGGGHHHHHHHH--H
T ss_pred hc-------CCCEEEEEECccchhhhhHHHH---------------HHHHHHh---cCCCEEEEEcCCCCCHHHHHH--H
Confidence 22 6899999999999764311110 1222222 246788999999999999995 4
Q ss_pred HHhhcc
Q psy6623 240 FEEKIK 245 (262)
Q Consensus 240 L~~~i~ 245 (262)
+.+.+.
T Consensus 163 i~~~~~ 168 (274)
T 3i8s_A 163 IDRYKA 168 (274)
T ss_dssp HHTCCC
T ss_pred HHHHHh
Confidence 555443
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.4e-10 Score=101.94 Aligned_cols=122 Identities=11% Similarity=0.031 Sum_probs=80.3
Q ss_pred EEEEeee-ccceeeeecCCccccc----------hhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 94 EVHFSFK-NLNFKLFDVGGQRSER----------KKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 94 ~~~~~~~-~~~~~i~D~~Gq~~~r----------~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
...+..+ +..+.+|||+|+...+ ..+..++++++++|+|+|.++ ..+..+...|++.+.
T Consensus 50 ~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~----------~~~~~~~~~~~~~l~ 119 (308)
T 3iev_A 50 LGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATE----------GWRPRDEEIYQNFIK 119 (308)
T ss_dssp EEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTT----------BSCHHHHHHHHHHTG
T ss_pred EEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCC----------CCCchhHHHHHHHHH
Confidence 3344556 7889999999996544 677889999999999999997 344444333344443
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 242 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~ 242 (262)
. .++|++|++||+|+...+-. +.. ....+.+.+. ....++.+||++|.||.++|+ ++..
T Consensus 120 ~----~~~pvilV~NK~Dl~~~~~~---~~~-----------~~~~l~~~~~-~~~~i~~vSA~~g~gv~~L~~--~l~~ 178 (308)
T 3iev_A 120 P----LNKPVIVVINKIDKIGPAKN---VLP-----------LIDEIHKKHP-ELTEIVPISALKGANLDELVK--TILK 178 (308)
T ss_dssp G----GCCCEEEEEECGGGSSSGGG---GHH-----------HHHHHHHHCT-TCCCEEECBTTTTBSHHHHHH--HHHH
T ss_pred h----cCCCEEEEEECccCCCCHHH---HHH-----------HHHHHHHhcc-CCCeEEEEeCCCCCCHHHHHH--HHHH
Confidence 2 36899999999998621100 000 0222222221 124578899999999999995 4555
Q ss_pred hccC
Q psy6623 243 KIKK 246 (262)
Q Consensus 243 ~i~~ 246 (262)
.+..
T Consensus 179 ~l~~ 182 (308)
T 3iev_A 179 YLPE 182 (308)
T ss_dssp HSCB
T ss_pred hCcc
Confidence 5543
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-11 Score=100.03 Aligned_cols=74 Identities=20% Similarity=0.322 Sum_probs=62.5
Q ss_pred eccceeeeecCCccccchhhhccccC----CCEEEEeeecc-ccccccccCcccccHHHHHHHHHHHHhCC---CCCCCe
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFED----VTAIIFCVAMS-EYDQVLHEDETTNRMQESLKLFDSICNNK---WFTDTS 171 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~----~~~iIfv~dls-~~d~~~~e~~~~~~l~e~~~~~~~i~~~~---~~~~~p 171 (262)
.+..+.+||++|++.++..|..|+.+ ++++|+|+|++ + ..++.+...++..++... ...++|
T Consensus 89 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~p 158 (193)
T 2ged_A 89 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVD----------PKKLTTTAEFLVDILSITESSCENGID 158 (193)
T ss_dssp CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCC----------HHHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCC----------chhHHHHHHHHHHHHhhhhhccccCCC
Confidence 67889999999999999999999987 89999999998 5 567777778887776532 225799
Q ss_pred EEEEeeCCchhh
Q psy6623 172 IILFLNKKDLFE 183 (262)
Q Consensus 172 iil~~NK~Dl~~ 183 (262)
++||+||+|+..
T Consensus 159 ~ilv~nK~Dl~~ 170 (193)
T 2ged_A 159 ILIACNKSELFT 170 (193)
T ss_dssp EEEEEECTTSTT
T ss_pred EEEEEEchHhcC
Confidence 999999999875
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=9.1e-11 Score=108.56 Aligned_cols=114 Identities=10% Similarity=0.128 Sum_probs=78.9
Q ss_pred EEEeeeccceeeeecCC----------ccccchhhhc-cccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh
Q psy6623 95 VHFSFKNLNFKLFDVGG----------QRSERKKWIH-CFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN 163 (262)
Q Consensus 95 ~~~~~~~~~~~i~D~~G----------q~~~r~~w~~-~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~ 163 (262)
..+..++..+++|||+| ++.++.++.. +++.++++|+|+|.++ .-......++..+..
T Consensus 236 ~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~-----------~~~~~~~~~~~~~~~ 304 (456)
T 4dcu_A 236 TSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEE-----------GIIEQDKRIAGYAHE 304 (456)
T ss_dssp EEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTT-----------CCCHHHHHHHHHHHH
T ss_pred EEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCC-----------CcCHHHHHHHHHHHH
Confidence 44566777899999999 8888887765 7899999999999886 112333344444433
Q ss_pred CCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcch-hHHHHHHhhh-ccceeecccccccceeeeeehh
Q psy6623 164 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGE-RNRMQESLKL-FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 164 ~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~-~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+.|++|++||+|+..++-.. ..+ .+++.+.+.. ..+.+++|||++|+||.++|..
T Consensus 305 ----~~~~~ilv~NK~Dl~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~ 362 (456)
T 4dcu_A 305 ----AGKAVVIVVNKWDAVDKDEST--------------MKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPA 362 (456)
T ss_dssp ----TTCEEEEEEECGGGSCCCSSH--------------HHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHH
T ss_pred ----cCCCEEEEEEChhcCCCchHH--------------HHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHH
Confidence 468999999999986421000 001 3344443332 2356889999999999999975
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.09 E-value=2.9e-10 Score=104.59 Aligned_cols=120 Identities=11% Similarity=-0.002 Sum_probs=80.6
Q ss_pred cccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 88 KTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 88 pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
.|+.+....+..++..+.+|||+|++.+.+.+..++..++++|+|+|.++ ..+.+..+++..+.. .
T Consensus 90 iTi~~~~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~-----------g~~~qt~~~l~~~~~---~ 155 (434)
T 1zun_B 90 ITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARY-----------GVQTQTRRHSYIASL---L 155 (434)
T ss_dssp CCCCCEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTT-----------CSCHHHHHHHHHHHH---T
T ss_pred cEEEeeeeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCC-----------CCcHHHHHHHHHHHH---c
Confidence 34555555666678889999999999999999999999999999999986 122333444332221 1
Q ss_pred CCCeEEEEeeCCchhhh---hhccCCCcccCCCCCCCCcchhHHHHHHhhh-----ccceeecccccccceeeeeehh
Q psy6623 168 TDTSIILFLNKKDLFEE---KIKKSPLTICFPEYAGKRPGERNRMQESLKL-----FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 168 ~~~piil~~NK~Dl~~~---kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-----~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
...|++|++||+|+... ++.. + .+.+.+.+.. ..+.++++||++|.||.++|..
T Consensus 156 ~~~~iIvviNK~Dl~~~~~~~~~~--i--------------~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~ 217 (434)
T 1zun_B 156 GIKHIVVAINKMDLNGFDERVFES--I--------------KADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER 217 (434)
T ss_dssp TCCEEEEEEECTTTTTSCHHHHHH--H--------------HHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred CCCeEEEEEEcCcCCcccHHHHHH--H--------------HHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence 22469999999998641 1100 0 1111111111 2367889999999999998764
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.09 E-value=4.2e-10 Score=96.92 Aligned_cols=112 Identities=19% Similarity=0.112 Sum_probs=81.0
Q ss_pred eeEEEEeeeccceeeeecCCccccch------hhhccc--cCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh
Q psy6623 92 IVEVHFSFKNLNFKLFDVGGQRSERK------KWIHCF--EDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN 163 (262)
Q Consensus 92 i~~~~~~~~~~~~~i~D~~Gq~~~r~------~w~~~f--~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~ 163 (262)
.....+.+++..+.+||++|+..+.. .+..|+ .+++++|+|+|.++ . ...+.++..+..
T Consensus 40 ~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~----------~---~~~~~~~~~~~~ 106 (271)
T 3k53_A 40 KKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTC----------L---MRNLFLTLELFE 106 (271)
T ss_dssp EEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGG----------H---HHHHHHHHHHHH
T ss_pred eeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCc----------c---hhhHHHHHHHHh
Confidence 34455666778899999999998877 788888 78999999999986 2 345556656654
Q ss_pred CCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 164 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 164 ~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
. ...|+++++||+|+..++-.... ..-+.+. ..+.+++|||++|.||.++|+.
T Consensus 107 ~---~~~p~ilv~NK~Dl~~~~~~~~~---------------~~~l~~~---lg~~~~~~Sa~~g~gi~~l~~~ 159 (271)
T 3k53_A 107 M---EVKNIILVLNKFDLLKKKGAKID---------------IKKMRKE---LGVPVIPTNAKKGEGVEELKRM 159 (271)
T ss_dssp T---TCCSEEEEEECHHHHHHHTCCCC---------------HHHHHHH---HSSCEEECBGGGTBTHHHHHHH
T ss_pred c---CCCCEEEEEEChhcCcccccHHH---------------HHHHHHH---cCCcEEEEEeCCCCCHHHHHHH
Confidence 3 23899999999999764321111 1222222 2467889999999999999964
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-10 Score=108.38 Aligned_cols=119 Identities=13% Similarity=0.108 Sum_probs=68.8
Q ss_pred ceeEEEEeeeccceeeeecCCccccchhh--------hccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 91 GIVEVHFSFKNLNFKLFDVGGQRSERKKW--------IHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 91 Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w--------~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.+....+.+++..+.+|||+|++.++..| ..++++++++|+|+|.++... ...+.+...++..+
T Consensus 270 d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s-------~~~~~~~~~~l~~l- 341 (476)
T 3gee_A 270 DYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERL-------DDELTEIRELKAAH- 341 (476)
T ss_dssp ---CEEEEETTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSS-------GGGHHHHHHHHHHC-
T ss_pred EEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcc-------hhhhHHHHHHHHhc-
Confidence 34455677788999999999998876544 457899999999999997211 12223444444332
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 242 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~ 242 (262)
.+.|+++|+||+|+....... .+.+.+. ....++.+||++|+||.++|+ ++.+
T Consensus 342 -----~~~piIvV~NK~Dl~~~~~~~-----------------~~~l~~~---~~~~~i~vSAktg~GI~eL~~--~i~~ 394 (476)
T 3gee_A 342 -----PAAKFLTVANKLDRAANADAL-----------------IRAIADG---TGTEVIGISALNGDGIDTLKQ--HMGD 394 (476)
T ss_dssp -----TTSEEEEEEECTTSCTTTHHH-----------------HHHHHHH---HTSCEEECBTTTTBSHHHHHH--HHTH
T ss_pred -----CCCCEEEEEECcCCCCccchh-----------------HHHHHhc---CCCceEEEEECCCCCHHHHHH--HHHH
Confidence 268999999999986532100 1111111 014578899999999999995 3444
Q ss_pred hc
Q psy6623 243 KI 244 (262)
Q Consensus 243 ~i 244 (262)
.+
T Consensus 395 ~~ 396 (476)
T 3gee_A 395 LV 396 (476)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.06 E-value=9.4e-11 Score=107.87 Aligned_cols=108 Identities=19% Similarity=0.121 Sum_probs=69.1
Q ss_pred eEEEEeeeccceeeeecCCcc--------ccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 93 VEVHFSFKNLNFKLFDVGGQR--------SERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 93 ~~~~~~~~~~~~~i~D~~Gq~--------~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
....+.+++..+.+|||||++ .++..|..++++++++|||+|.++ ..... -.++..++..
T Consensus 42 ~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~----------~~~~~--d~~~~~~l~~ 109 (436)
T 2hjg_A 42 IYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGRE----------GVTAA--DEEVAKILYR 109 (436)
T ss_dssp EEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTT----------CSCHH--HHHHHHHHTT
T ss_pred EEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCC----------CCCHH--HHHHHHHHHH
Confidence 344455677899999999996 678889999999999999999986 22222 2334444432
Q ss_pred CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeehh
Q psy6623 165 KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~~ 237 (262)
.+.|++|++||+|+..... ...++. . ..+ .++.+||++|.||.++++.
T Consensus 110 ---~~~pvilv~NK~D~~~~~~---~~~~~~-~------------------lg~~~~~~iSA~~g~gv~~L~~~ 158 (436)
T 2hjg_A 110 ---TKKPVVLAVNKLDNTEMRA---NIYDFY-S------------------LGFGEPYPISGTHGLGLGDLLDA 158 (436)
T ss_dssp ---CCSCEEEEEECCCC--------CCCSSG-G------------------GSSCCCEECBTTTTBTHHHHHHH
T ss_pred ---cCCCEEEEEECccCccchh---hHHHHH-H------------------cCCCCeEEEeCcCCCChHHHHHH
Confidence 4689999999999875321 111110 0 111 3678999999999999963
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.6e-10 Score=106.35 Aligned_cols=111 Identities=13% Similarity=0.097 Sum_probs=73.5
Q ss_pred eeEEEEeeeccceeeeecCCccc---------cchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 92 IVEVHFSFKNLNFKLFDVGGQRS---------ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 92 i~~~~~~~~~~~~~i~D~~Gq~~---------~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.....+.+++..+++|||||++. ++..+..++++++++|||+|.++- ..... .++..++
T Consensus 39 ~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~---------~~~~d---~~i~~~l 106 (439)
T 1mky_A 39 PVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRG---------ITKED---ESLADFL 106 (439)
T ss_dssp CSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTC---------CCHHH---HHHHHHH
T ss_pred eeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCC---------CCHHH---HHHHHHH
Confidence 44556667788899999999764 467788899999999999998751 11111 1222222
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~~ 237 (262)
.. .+.|++|++||+|+.... . ... ...|....+ .++++||++|.||.++|+.
T Consensus 107 ~~---~~~p~ilv~NK~D~~~~~-~-~~~------------------~~~~~~lg~~~~~~iSA~~g~gv~~L~~~ 159 (439)
T 1mky_A 107 RK---STVDTILVANKAENLREF-E-REV------------------KPELYSLGFGEPIPVSAEHNINLDTMLET 159 (439)
T ss_dssp HH---HTCCEEEEEESCCSHHHH-H-HHT------------------HHHHGGGSSCSCEECBTTTTBSHHHHHHH
T ss_pred HH---cCCCEEEEEeCCCCcccc-H-HHH------------------HHHHHhcCCCCEEEEeccCCCCHHHHHHH
Confidence 21 268999999999986431 0 001 001111222 3678999999999999964
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-10 Score=107.65 Aligned_cols=135 Identities=11% Similarity=0.047 Sum_probs=67.3
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+..|+++....+..++..+.+|||+|++.|.+.+..++..++++|+|+|.++-.. | .+.+....+.+.+.....
T Consensus 105 ~giTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~---e-~sf~~~~qt~e~l~~~~~-- 178 (467)
T 1r5b_A 105 KGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEF---E-AGFERGGQTREHAVLART-- 178 (467)
T ss_dssp --------CCEEECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHH---H-HTTSTTCCHHHHHHHHHH--
T ss_pred cCceEEeeeEEEecCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCcc---c-cccCCCCcHHHHHHHHHH--
Confidence 4567777767777788899999999999999999999999999999999986100 0 000000122233322221
Q ss_pred CCCCCe-EEEEeeCCchhhhhhccCCCcccCCCCCCCCcch-hHHHHHH--hh-hccceeecccccccceeeeeeh
Q psy6623 166 WFTDTS-IILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGE-RNRMQES--LK-LFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 166 ~~~~~p-iil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~-~~~i~~~--f~-~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
.++| ++|++||+|+.........+... ..+ ..++... +. ...+.++++||++|.||.++|+
T Consensus 179 --~~vp~iivviNK~Dl~~~~~~~~~~~~i--------~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~ 244 (467)
T 1r5b_A 179 --QGINHLVVVINKMDEPSVQWSEERYKEC--------VDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 244 (467)
T ss_dssp --TTCSSEEEEEECTTSTTCSSCHHHHHHH--------HHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred --cCCCEEEEEEECccCCCccccHHHHHHH--------HHHHHHHHHHhcCCCccCCceEEecccccccccccccc
Confidence 2566 99999999985310000000000 000 2222221 11 1246788999999999999884
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-10 Score=108.60 Aligned_cols=111 Identities=16% Similarity=0.105 Sum_probs=76.3
Q ss_pred EeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEe
Q psy6623 97 FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFL 176 (262)
Q Consensus 97 ~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~ 176 (262)
+..++..+++|||+|++.|...|..++..++++|+|+|.++- .+.++.+.+..... .++|+++++
T Consensus 46 v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g-----------~~~qT~e~l~~~~~----~~vPiIVvi 110 (501)
T 1zo1_I 46 VETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDG-----------VMPQTIEAIQHAKA----AQVPVVVAV 110 (501)
T ss_dssp CCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTB-----------SCTTTHHHHHHHHH----TTCCEEEEE
T ss_pred EEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccC-----------ccHHHHHHHHHHHh----cCceEEEEE
Confidence 444667899999999999999999999999999999998761 11222333333221 368999999
Q ss_pred eCCchhhhhhc--cCCCc--ccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 177 NKKDLFEEKIK--KSPLT--ICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 177 NK~Dl~~~kl~--~~~l~--~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
||+|+...... ...+. ..+|+..| ..+.++++||++|.||.++|+.
T Consensus 111 NKiDl~~~~~~~v~~~l~~~~~~~~~~~---------------~~~~~v~vSAktG~gI~eLle~ 160 (501)
T 1zo1_I 111 NKIDKPEADPDRVKNELSQYGILPEEWG---------------GESQFVHVSAKAGTGIDELLDA 160 (501)
T ss_dssp ECSSSSTTCCCCTTCCCCCCCCCTTCCS---------------SSCEEEECCTTTCTTCTTHHHH
T ss_pred EeccccccCHHHHHHHHHHhhhhHHHhC---------------CCccEEEEeeeeccCcchhhhh
Confidence 99999752111 11111 12222111 2356889999999999999964
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.2e-10 Score=109.43 Aligned_cols=108 Identities=17% Similarity=0.139 Sum_probs=77.6
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
++..+++|||+|++.+...+..+++.++++|+|+|.++ ..+..+.+.+..+.. .++|++|++||+
T Consensus 50 ~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~d-----------g~~~qt~e~l~~~~~----~~vPiIVViNKi 114 (537)
T 3izy_P 50 SGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADD-----------GVMKQTVESIQHAKD----AHVPIVLAINKC 114 (537)
T ss_dssp CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSS-----------CCCHHHHHHHHHHHT----TTCCEEECCBSG
T ss_pred CCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCC-----------CccHHHHHHHHHHHH----cCCcEEEEEecc
Confidence 45689999999999999999999999999999999986 344556666655543 368999999999
Q ss_pred chhhhhhccC--CCcc--cCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKS--PLTI--CFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~--~l~~--~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+........ .+.. .+++..| ..+.++++||++|.||.++|+.
T Consensus 115 Dl~~~~~~~v~~~l~~~~~~~e~~~---------------~~~~iv~vSAktG~GI~eLle~ 161 (537)
T 3izy_P 115 DKAEADPEKVKKELLAYDVVCEDYG---------------GDVQAVHVSALTGENMMALAEA 161 (537)
T ss_dssp GGTTTSCCSSSSHHHHTTSCCCCSS---------------SSEEECCCCSSSSCSSHHHHHH
T ss_pred cccccchHHHHHHHHhhhhhHHhcC---------------CCceEEEEECCCCCCchhHHHH
Confidence 9975321110 0000 0011001 2356889999999999999964
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.03 E-value=3.1e-10 Score=101.21 Aligned_cols=124 Identities=14% Similarity=0.100 Sum_probs=80.7
Q ss_pred EEeeec-cceeeeecCCcc----ccchhhhcccc---CCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC-CC
Q psy6623 96 HFSFKN-LNFKLFDVGGQR----SERKKWIHCFE---DVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN-KW 166 (262)
Q Consensus 96 ~~~~~~-~~~~i~D~~Gq~----~~r~~w~~~f~---~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~-~~ 166 (262)
.+.+.+ ..+.+||++|+. ..+.++..|++ .++++|+|+|+++.+ ..+.+.+...+..++... +.
T Consensus 199 ~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~-------~~~~~~~~~~~~~eL~~~~~~ 271 (342)
T 1lnz_A 199 MVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLE-------GRDPYDDYLTINQELSEYNLR 271 (342)
T ss_dssp EEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSS-------CCCHHHHHHHHHHHHHHSCSS
T ss_pred EEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCccc-------ccChHHHHHHHHHHHHHhhhh
Confidence 355554 789999999964 34445566655 499999999998732 124455555555555543 23
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhccC
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKK 246 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~~ 246 (262)
+.+.|++|++||+|+..++-. .+-+.+.+.. .+.++++||++++||+++|. +|.+.+..
T Consensus 272 l~~~p~ilV~NK~Dl~~~~e~------------------~~~l~~~l~~-~~~v~~iSA~tg~gi~eL~~--~l~~~l~~ 330 (342)
T 1lnz_A 272 LTERPQIIVANKMDMPEAAEN------------------LEAFKEKLTD-DYPVFPISAVTREGLRELLF--EVANQLEN 330 (342)
T ss_dssp TTTSCBCBEEECTTSTTHHHH------------------HHHHHHHCCS-CCCBCCCSSCCSSTTHHHHH--HHHHHHTS
T ss_pred hcCCCEEEEEECccCCCCHHH------------------HHHHHHHhhc-CCCEEEEECCCCcCHHHHHH--HHHHHHhh
Confidence 568999999999999753200 1122222221 15578999999999999995 45555554
Q ss_pred C
Q psy6623 247 S 247 (262)
Q Consensus 247 ~ 247 (262)
.
T Consensus 331 ~ 331 (342)
T 1lnz_A 331 T 331 (342)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=5.9e-10 Score=97.71 Aligned_cols=114 Identities=14% Similarity=0.069 Sum_probs=74.1
Q ss_pred eeeccceeeeecCCccc--------cchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCC
Q psy6623 98 SFKNLNFKLFDVGGQRS--------ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTD 169 (262)
Q Consensus 98 ~~~~~~~~i~D~~Gq~~--------~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~ 169 (262)
..++.++.+|||+|+.. +...+..++++++++|+|+|.++ .-... ..++...+... ..+
T Consensus 51 ~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~----------~~~~~--~~~i~~~l~~~-~~~ 117 (301)
T 1wf3_A 51 TEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRH----------PPTPE--DELVARALKPL-VGK 117 (301)
T ss_dssp EETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTS----------CCCHH--HHHHHHHHGGG-TTT
T ss_pred EeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCC----------CCChH--HHHHHHHHHhh-cCC
Confidence 44678899999999976 45566778999999999999986 11111 12332223221 247
Q ss_pred CeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhcc
Q psy6623 170 TSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK 245 (262)
Q Consensus 170 ~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~ 245 (262)
+|+++++||+|+..++-. + ...+... .....++++||++|.||.++|+ ++...+.
T Consensus 118 ~p~ilV~NK~Dl~~~~~~---~--------------~~~~~~~--~~~~~~~~iSA~~g~gv~~l~~--~l~~~l~ 172 (301)
T 1wf3_A 118 VPILLVGNKLDAAKYPEE---A--------------MKAYHEL--LPEAEPRMLSALDERQVAELKA--DLLALMP 172 (301)
T ss_dssp SCEEEEEECGGGCSSHHH---H--------------HHHHHHT--STTSEEEECCTTCHHHHHHHHH--HHHTTCC
T ss_pred CCEEEEEECcccCCchHH---H--------------HHHHHHh--cCcCcEEEEeCCCCCCHHHHHH--HHHHhcc
Confidence 899999999998642210 0 0111111 0112467899999999999994 5655554
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=4.1e-10 Score=103.55 Aligned_cols=125 Identities=15% Similarity=0.107 Sum_probs=76.2
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHH-------HHHHHHH
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQ-------ESLKLFD 159 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~-------e~~~~~~ 159 (262)
..|+.+....+..++..+.+|||+|++.+.+.+..+++.++++|+|+|.++ .+++ +..+.+.
T Consensus 69 giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-----------gsfe~~~~~~~qt~~~~~ 137 (435)
T 1jny_A 69 GVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-----------GEYEAGMSVEGQTREHII 137 (435)
T ss_dssp --------CEEECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-----------THHHHHHSTTCHHHHHHH
T ss_pred CceeEeeEEEEecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-----------CccccccccchHHHHHHH
Confidence 455555555677778899999999999999999999999999999999986 2222 2222222
Q ss_pred HHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-----ccceeecccccccceeeee
Q psy6623 160 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-----FDSICNNKWFTDTSIILFL 234 (262)
Q Consensus 160 ~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-----~~~~~~~tsA~d~~~I~~~ 234 (262)
.... ..-.|++|++||+|+.........+.. ..+.+.+.+.. ..+.++++||++|+||.++
T Consensus 138 ~~~~---~~~~~iivviNK~Dl~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 138 LAKT---MGLDQLIVAVNKMDLTEPPYDEKRYKE-----------IVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp HHHH---TTCTTCEEEEECGGGSSSTTCHHHHHH-----------HHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred HHHH---cCCCeEEEEEEcccCCCccccHHHHHH-----------HHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 2211 122468999999998641000000000 01122222222 1367889999999999988
Q ss_pred eh
Q psy6623 235 NK 236 (262)
Q Consensus 235 f~ 236 (262)
+.
T Consensus 204 ~~ 205 (435)
T 1jny_A 204 SE 205 (435)
T ss_dssp CS
T ss_pred cc
Confidence 75
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-10 Score=106.87 Aligned_cols=115 Identities=11% Similarity=0.118 Sum_probs=78.0
Q ss_pred EEEEeeeccceeeeecCCc----------cccchhhh-ccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 94 EVHFSFKNLNFKLFDVGGQ----------RSERKKWI-HCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 94 ~~~~~~~~~~~~i~D~~Gq----------~~~r~~w~-~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
...+.+++..+++|||+|+ +.++.++. .++++++++|+|+|+++ ..+.++ ..++..+.
T Consensus 215 ~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~----------~~s~~~-~~~~~~~~ 283 (436)
T 2hjg_A 215 DTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEE----------GIIEQD-KRIAGYAH 283 (436)
T ss_dssp CEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTT----------CCCHHH-HHHHHHHH
T ss_pred EEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCc----------CCcHHH-HHHHHHHH
Confidence 3456667778999999998 55555554 48899999999999987 333333 45555554
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcch-hHHHHHHhhh-ccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGE-RNRMQESLKL-FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~-~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
. .++|++|++||+|+..++- .. ..+ .+.+...+.. ....++++||++|.||.++|+.
T Consensus 284 ~----~~~~iiiv~NK~Dl~~~~~----~~----------~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~ 342 (436)
T 2hjg_A 284 E----AGKAVVIVVNKWDAVDKDE----ST----------MKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPA 342 (436)
T ss_dssp H----TTCEEEEEEECGGGSCCCT----TH----------HHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHH
T ss_pred H----cCCcEEEEEECccCCCcch----HH----------HHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHH
Confidence 3 3689999999999864210 00 000 2233333322 3456789999999999999974
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.00 E-value=4.1e-10 Score=103.72 Aligned_cols=131 Identities=12% Similarity=0.032 Sum_probs=80.9
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
..|+.+....+..++..+.+|||+|++.|.+.+..+++.++++|+|+|.++-.. |. ..+...+..+.+..+..
T Consensus 80 GiTid~~~~~~~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~---e~-~~~~~~qt~e~l~~~~~--- 152 (439)
T 3j2k_7 80 GKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEF---ET-GFEKGGQTREHAMLAKT--- 152 (439)
T ss_pred CceEEEeEEEEecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCcc---cc-ccCCCchHHHHHHHHHH---
Confidence 345555666677788899999999999999999999999999999999986110 00 00001123333332221
Q ss_pred CCCCe-EEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh------ccceeecccccccceeeeeeh
Q psy6623 167 FTDTS-IILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL------FDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 167 ~~~~p-iil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~------~~~~~~~tsA~d~~~I~~~f~ 236 (262)
.++| ++|++||+|+............ ..+.+...+.. ..+.++++||++|.||.++.+
T Consensus 153 -~~v~~iIvviNK~Dl~~~~~~~~~~~~-----------i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 153 -AGVKHLIVLINKMDDPTVNWSNERYEE-----------CKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred -cCCCeEEEEeecCCCcccchHHHHHHH-----------HHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 2455 9999999998531000000000 01111111111 146688999999999999775
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=98.98 E-value=6e-10 Score=106.18 Aligned_cols=124 Identities=11% Similarity=0.094 Sum_probs=80.3
Q ss_pred ccceeEEEEeee-----ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh
Q psy6623 89 TTGIVEVHFSFK-----NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN 163 (262)
Q Consensus 89 T~Gi~~~~~~~~-----~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~ 163 (262)
|+......+.+. +..+++|||+|+..+...+..+++.++++|+|+|.++ .... +....|.....
T Consensus 53 Ti~~~~~~~~~~~~~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~----------gv~~-qt~~~~~~~~~ 121 (599)
T 3cb4_D 53 TIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQ----------GVEA-QTLANCYTAME 121 (599)
T ss_dssp ----CEEEEEEECTTSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTT----------CCCT-HHHHHHHHHHH
T ss_pred eeeeeEEEEEEecCCCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCC----------CCCH-HHHHHHHHHHH
Confidence 333333445554 3789999999999999999999999999999999987 2222 23333433332
Q ss_pred CCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhh
Q psy6623 164 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEK 243 (262)
Q Consensus 164 ~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~ 243 (262)
.++|+++++||+|+....... ..+-+.+.+.-....++++||++|.||.++|+ ++...
T Consensus 122 ----~~ipiIvViNKiDl~~a~~~~----------------v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~--~I~~~ 179 (599)
T 3cb4_D 122 ----MDLEVVPVLNKIDLPAADPER----------------VAEEIEDIVGIDATDAVRCSAKTGVGVQDVLE--RLVRD 179 (599)
T ss_dssp ----TTCEEEEEEECTTSTTCCHHH----------------HHHHHHHHTCCCCTTCEEECTTTCTTHHHHHH--HHHHH
T ss_pred ----CCCCEEEeeeccCcccccHHH----------------HHHHHHHHhCCCcceEEEeecccCCCchhHHH--HHhhc
Confidence 368999999999996521000 01222332221222367899999999999995 34444
Q ss_pred cc
Q psy6623 244 IK 245 (262)
Q Consensus 244 i~ 245 (262)
+.
T Consensus 180 lp 181 (599)
T 3cb4_D 180 IP 181 (599)
T ss_dssp SC
T ss_pred CC
Confidence 43
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.98 E-value=1e-09 Score=103.30 Aligned_cols=81 Identities=17% Similarity=0.271 Sum_probs=65.1
Q ss_pred cccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 88 KTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 88 pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
.|+......+.+++..+++|||+|+..++..+..+++.++++|+|+|.++ ........+|..+..
T Consensus 68 iTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~-----------g~~~~t~~~~~~~~~---- 132 (528)
T 3tr5_A 68 ISVTTSVMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAK-----------GVEPRTIKLMEVCRL---- 132 (528)
T ss_dssp CSSSSSEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTT-----------CSCHHHHHHHHHHHT----
T ss_pred eeEEEeEEEEEeCCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCC-----------CCCHHHHHHHHHHHH----
Confidence 45555667778888999999999999999999999999999999999987 223444556655543
Q ss_pred CCCeEEEEeeCCchhh
Q psy6623 168 TDTSIILFLNKKDLFE 183 (262)
Q Consensus 168 ~~~piil~~NK~Dl~~ 183 (262)
.++|+++|+||+|+..
T Consensus 133 ~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 133 RHTPIMTFINKMDRDT 148 (528)
T ss_dssp TTCCEEEEEECTTSCC
T ss_pred cCCCEEEEEeCCCCcc
Confidence 3689999999999853
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=8.1e-10 Score=102.93 Aligned_cols=128 Identities=17% Similarity=0.122 Sum_probs=80.2
Q ss_pred cccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 88 KTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 88 pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
.|+.+....+..++..+.+|||+|++.+.+.+..++++++++|+|+|.++-.. +. ..+-.....+.+..... .
T Consensus 97 iTi~~~~~~~~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~---~~-~~~~~~qt~e~~~~~~~---~ 169 (483)
T 3p26_A 97 VTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAF---ES-GFDLDGQTKEHMLLASS---L 169 (483)
T ss_dssp SSCCCCEEEEECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC----------CCCCHHHHHHHHHHHH---T
T ss_pred cceEeeeEEEecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCcc---cc-ccchhhhHHHHHHHHHH---c
Confidence 35555666677788999999999999999999999999999999999987110 00 00011222222222211 2
Q ss_pred CCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcch-hHHHHHHhhh-----ccceeecccccccceeeeeeh
Q psy6623 168 TDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGE-RNRMQESLKL-----FDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 168 ~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~-~~~i~~~f~~-----~~~~~~~tsA~d~~~I~~~f~ 236 (262)
...|++|++||+|+....-.. . .+ .+.+...+.. ..+.++++||++|+||.++..
T Consensus 170 ~~~~iIvviNK~Dl~~~~~~~--~------------~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~ 230 (483)
T 3p26_A 170 GIHNLIIAMNKMDNVDWSQQR--F------------EEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEY 230 (483)
T ss_dssp TCCCEEEEEECGGGGTTCHHH--H------------HHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCC
T ss_pred CCCcEEEEEECcCcccchHHH--H------------HHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCc
Confidence 235799999999986511000 0 00 1222222211 256788999999999998753
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=98.96 E-value=8.9e-10 Score=101.99 Aligned_cols=122 Identities=12% Similarity=0.043 Sum_probs=78.7
Q ss_pred cccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccH---HHHHHHHHHHHhC
Q psy6623 88 KTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRM---QESLKLFDSICNN 164 (262)
Q Consensus 88 pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l---~e~~~~~~~i~~~ 164 (262)
.|+.+....+..++..+.+|||+|++.|.+.+..++..++++|+|+|.++-.. ..++ .+..+.+.....
T Consensus 71 iTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~-------~~sf~~~~qt~~~~~~~~~- 142 (458)
T 1f60_A 71 ITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEF-------EAGISKDGQTREHALLAFT- 142 (458)
T ss_dssp CCCSCSCEEEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHH-------HHHTCTTSHHHHHHHHHHH-
T ss_pred cEEEEEEEEEecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCcc-------ccccCcchhHHHHHHHHHH-
Confidence 45555556667778899999999999999999999999999999999986100 0001 033333332221
Q ss_pred CCCCCCe-EEEEeeCCchhh---hhhccCCCcccCCCCCCCCcchhHHHHHHhhh-----ccceeecccccccceeeeee
Q psy6623 165 KWFTDTS-IILFLNKKDLFE---EKIKKSPLTICFPEYAGKRPGERNRMQESLKL-----FDSICNNKWFTDTSIILFLN 235 (262)
Q Consensus 165 ~~~~~~p-iil~~NK~Dl~~---~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-----~~~~~~~tsA~d~~~I~~~f 235 (262)
.++| ++|++||+|+.. +++.. + .+.+...+.. ..+.++++||++|.||.+..
T Consensus 143 ---~~v~~iivviNK~Dl~~~~~~~~~~--i--------------~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~ 203 (458)
T 1f60_A 143 ---LGVRQLIVAVNKMDSVKWDESRFQE--I--------------VKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEAT 203 (458)
T ss_dssp ---TTCCEEEEEEECGGGGTTCHHHHHH--H--------------HHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCC
T ss_pred ---cCCCeEEEEEEccccccCCHHHHHH--H--------------HHHHHHHHHHcCCCccCceEEEeecccCcCccccc
Confidence 2454 999999999963 11100 0 1112111111 23678899999999998765
Q ss_pred h
Q psy6623 236 K 236 (262)
Q Consensus 236 ~ 236 (262)
.
T Consensus 204 ~ 204 (458)
T 1f60_A 204 T 204 (458)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.3e-09 Score=96.05 Aligned_cols=119 Identities=18% Similarity=0.184 Sum_probs=79.9
Q ss_pred cccceeEEEEeeeccceeeeecCCccccc---------hhhhccccCCCEEEEeeeccccccccccCcccc--cHHHHHH
Q psy6623 88 KTTGIVEVHFSFKNLNFKLFDVGGQRSER---------KKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTN--RMQESLK 156 (262)
Q Consensus 88 pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r---------~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~--~l~e~~~ 156 (262)
.|.++....+..++..+.+|||+|+.... .....+...++++|+|+|+++ .. .+.+...
T Consensus 200 ~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~----------~~~~~~~~~~~ 269 (357)
T 2e87_A 200 TTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSE----------HCGFPLEEQIH 269 (357)
T ss_dssp CSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTC----------TTSSCHHHHHH
T ss_pred eeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCc----------cccCCHHHHHH
Confidence 34455555555567889999999985432 122245567999999999987 33 5566667
Q ss_pred HHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 157 LFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 157 ~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
++..+.... .+.|+++++||+|+....-. .-+.+......+.++++||++|+||+++|+
T Consensus 270 ~~~~i~~~~--~~~piilV~NK~Dl~~~~~~-------------------~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~ 328 (357)
T 2e87_A 270 LFEEVHGEF--KDLPFLVVINKIDVADEENI-------------------KRLEKFVKEKGLNPIKISALKGTGIDLVKE 328 (357)
T ss_dssp HHHHHHHHT--TTSCEEEEECCTTTCCHHHH-------------------HHHHHHHHHTTCCCEECBTTTTBTHHHHHH
T ss_pred HHHHHHHhc--CCCCEEEEEECcccCChHHH-------------------HHHHHHHHhcCCCeEEEeCCCCcCHHHHHH
Confidence 777666421 27899999999998653210 011111112346678999999999999996
Q ss_pred h
Q psy6623 237 K 237 (262)
Q Consensus 237 ~ 237 (262)
.
T Consensus 329 ~ 329 (357)
T 2e87_A 329 E 329 (357)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.1e-09 Score=104.18 Aligned_cols=110 Identities=15% Similarity=0.149 Sum_probs=75.9
Q ss_pred cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCch
Q psy6623 102 LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl 181 (262)
..+++|||+|+..|...+..+++.++++|+|+|.++ ... .+....|..... .++|+++++||+|+
T Consensus 73 ~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~----------gv~-~qt~~~~~~a~~----~~ipiIvviNKiDl 137 (600)
T 2ywe_A 73 YKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQ----------GIE-AQTVANFWKAVE----QDLVIIPVINKIDL 137 (600)
T ss_dssp EEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTT----------BCC-HHHHHHHHHHHH----TTCEEEEEEECTTS
T ss_pred EEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCC----------Ccc-HHHHHHHHHHHH----CCCCEEEEEeccCc
Confidence 789999999999999999999999999999999987 222 233444444433 36899999999998
Q ss_pred hhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 182 FEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 182 ~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
....... . .+-+.+.+.-....++++||++|.||.++|+ ++...+
T Consensus 138 ~~a~~~~--v--------------~~el~~~lg~~~~~vi~vSAktg~GI~~Lle--~I~~~l 182 (600)
T 2ywe_A 138 PSADVDR--V--------------KKQIEEVLGLDPEEAILASAKEGIGIEEILE--AIVNRI 182 (600)
T ss_dssp TTCCHHH--H--------------HHHHHHTSCCCGGGCEECBTTTTBSHHHHHH--HHHHHS
T ss_pred cccCHHH--H--------------HHHHHHhhCCCcccEEEEEeecCCCchHHHH--HHHHhc
Confidence 6521100 0 1122222211122367899999999999995 344444
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=6e-10 Score=101.45 Aligned_cols=113 Identities=16% Similarity=0.040 Sum_probs=78.0
Q ss_pred cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCch
Q psy6623 102 LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl 181 (262)
..+.+|||+|++.+.+.+..++..++++|+|+|.++ ..++.+..+++..+... ...|+++++||+|+
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~----------~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl 141 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANE----------PFPQPQTREHFVALGII---GVKNLIIVQNKVDV 141 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTS----------CSSCHHHHHHHHHHHHH---TCCCEEEEEECGGG
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCC----------CCCcHHHHHHHHHHHHc---CCCCEEEEEECccc
Confidence 678999999999999999999999999999999987 33345555555433221 23589999999999
Q ss_pred hhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh---ccceeecccccccceeeeeehhhHHHhhc
Q psy6623 182 FEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL---FDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 182 ~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~---~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
....-.... .+.+.+.+.. ..+.++++||++|+||.++++ .|...+
T Consensus 142 ~~~~~~~~~---------------~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~--~l~~~l 190 (403)
T 3sjy_A 142 VSKEEALSQ---------------YRQIKQFTKGTWAENVPIIPVSALHKINIDSLIE--GIEEYI 190 (403)
T ss_dssp SCHHHHHHH---------------HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHH--HHHHHS
T ss_pred cchHHHHHH---------------HHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHH--HHHHhC
Confidence 643210000 1122222211 346788999999999999995 444433
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=98.95 E-value=1e-09 Score=102.14 Aligned_cols=110 Identities=15% Similarity=0.266 Sum_probs=74.4
Q ss_pred ceeEEEEeeeccceeeeecCCcc-ccc--------hhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHH
Q psy6623 91 GIVEVHFSFKNLNFKLFDVGGQR-SER--------KKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSI 161 (262)
Q Consensus 91 Gi~~~~~~~~~~~~~i~D~~Gq~-~~r--------~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i 161 (262)
.+....+.+++..+.+|||+|++ ... ..+..+++.++++|+|+|+++ ..+..+ .++++.
T Consensus 280 d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~----------~~s~~~-~~il~~- 347 (482)
T 1xzp_A 280 DVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASS----------PLDEED-RKILER- 347 (482)
T ss_dssp CSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTS----------CCCHHH-HHHHHH-
T ss_pred eeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCC----------CCCHHH-HHHHHH-
Confidence 34455667778899999999998 543 234568899999999999987 333332 334433
Q ss_pred HhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 162 CNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 162 ~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+ .+.|++|++||+|+..+ . . .+-+.+.+ ...+.++++||++|+||+++|+.
T Consensus 348 l-----~~~piivV~NK~DL~~~-~---~---------------~~~~~~~~-~~~~~~i~iSAktg~Gi~eL~~~ 398 (482)
T 1xzp_A 348 I-----KNKRYLVVINKVDVVEK-I---N---------------EEEIKNKL-GTDRHMVKISALKGEGLEKLEES 398 (482)
T ss_dssp H-----TTSSEEEEEEECSSCCC-C---C---------------HHHHHHHH-TCSTTEEEEEGGGTCCHHHHHHH
T ss_pred h-----cCCCEEEEEECcccccc-c---C---------------HHHHHHHh-cCCCcEEEEECCCCCCHHHHHHH
Confidence 2 36899999999998542 1 0 01111111 12245788999999999999964
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.93 E-value=6.9e-10 Score=100.05 Aligned_cols=121 Identities=10% Similarity=0.046 Sum_probs=84.1
Q ss_pred eeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 85 ~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
.+..|+++....+..++..+.+|||+|++.|.+....+++.++++|+|+| ++ ..+.+..+++..+..
T Consensus 43 ~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~-----------g~~~qt~e~~~~~~~- 109 (370)
T 2elf_A 43 KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ-----------GLDAHTGECIIALDL- 109 (370)
T ss_dssp EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-----------CCCHHHHHHHHHHHH-
T ss_pred hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-----------CCcHHHHHHHHHHHH-
Confidence 45678888888888888999999999999998888889999999999999 54 334444444443332
Q ss_pred CCCCCCeE-EEEee-CCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh---ccceeec--ccccc---cceeeee
Q psy6623 165 KWFTDTSI-ILFLN-KKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL---FDSICNN--KWFTD---TSIILFL 234 (262)
Q Consensus 165 ~~~~~~pi-il~~N-K~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~---~~~~~~~--tsA~d---~~~I~~~ 234 (262)
.++|. ++++| |+|+ .+..... . .+-+.+.+.. ..+.+++ +||++ ++||.++
T Consensus 110 ---~~i~~~ivvvNNK~Dl-~~~~~~~-~--------------~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L 170 (370)
T 2elf_A 110 ---LGFKHGIIALTRSDST-HMHAIDE-L--------------KAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDEL 170 (370)
T ss_dssp ---TTCCEEEEEECCGGGS-CHHHHHH-H--------------HHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHH
T ss_pred ---cCCCeEEEEEEeccCC-CHHHHHH-H--------------HHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHH
Confidence 24666 88888 9998 4321000 0 0111221111 2356788 99999 9999999
Q ss_pred ehh
Q psy6623 235 NKK 237 (262)
Q Consensus 235 f~~ 237 (262)
++.
T Consensus 171 ~~~ 173 (370)
T 2elf_A 171 KAR 173 (370)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.92 E-value=1.4e-09 Score=99.07 Aligned_cols=113 Identities=17% Similarity=0.096 Sum_probs=68.6
Q ss_pred cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCch
Q psy6623 102 LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl 181 (262)
..+.+||++|++.+.+.+......++++|+|+|.++ .-...++.+.+..+.. +...|++|++||+|+
T Consensus 81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~----------g~~~~qt~e~l~~~~~---l~~~~iivv~NK~Dl 147 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANE----------PCPQPQTKEHLMALEI---LGIDKIIIVQNKIDL 147 (408)
T ss_dssp EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTS----------CSSCHHHHHHHHHHHH---TTCCCEEEEEECTTS
T ss_pred cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCC----------CCCCchhHHHHHHHHH---cCCCeEEEEEEccCC
Confidence 579999999999999888888889999999999986 1112333333332211 223589999999998
Q ss_pred hhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh---ccceeecccccccceeeeeehhhHHHhhc
Q psy6623 182 FEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL---FDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 182 ~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~---~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
....- ... . .+.+.+.+.. ..+.++++||++|+||.++++ +|...+
T Consensus 148 ~~~~~----~~~---------~--~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~--~l~~~i 196 (408)
T 1s0u_A 148 VDEKQ----AEE---------N--YEQIKEFVKGTIAENAPIIPISAHHEANIDVLLK--AIQDFI 196 (408)
T ss_dssp SCTTT----TTT---------H--HHHHHHHHTTSTTTTCCEEEC------CHHHHHH--HHHHHS
T ss_pred CCHHH----HHH---------H--HHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHH--HHHHhC
Confidence 65310 000 0 1222222221 346788999999999999995 455444
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=5.1e-10 Score=104.28 Aligned_cols=120 Identities=16% Similarity=0.081 Sum_probs=79.1
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
..|+.+....+.+++..+.+||++|++.+.+.+..++..++++|+|+|.++ ....+..+.+..+..
T Consensus 58 GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~-----------g~~~qt~e~l~~~~~--- 123 (482)
T 1wb1_A 58 GITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKE-----------GPKTQTGEHMLILDH--- 123 (482)
T ss_dssp ------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTT-----------CSCHHHHHHHHHHHH---
T ss_pred ccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCC-----------CccHHHHHHHHHHHH---
Confidence 346665556677788899999999999999999999999999999999886 122333333332221
Q ss_pred CCCCeEEEEeeCCchhhhh-hccCCCcccCCCCCCCCcchhHHHHHHhhh----ccceeecccccccceeeeeehh
Q psy6623 167 FTDTSIILFLNKKDLFEEK-IKKSPLTICFPEYAGKRPGERNRMQESLKL----FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~k-l~~~~l~~~fp~~~g~~~~~~~~i~~~f~~----~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.++|+++++||+|+..+. .... .+.+.+.+.. ..+.++++||++|+||.++++.
T Consensus 124 -~~ip~IvviNK~Dl~~~~~~~~~----------------~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~ 182 (482)
T 1wb1_A 124 -FNIPIIVVITKSDNAGTEEIKRT----------------EMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNL 182 (482)
T ss_dssp -TTCCBCEEEECTTSSCHHHHHHH----------------HHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHH
T ss_pred -cCCCEEEEEECCCcccchhHHHH----------------HHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHH
Confidence 358889999999986421 1000 1111111111 1466889999999999999964
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=98.89 E-value=2.3e-09 Score=97.60 Aligned_cols=79 Identities=18% Similarity=0.273 Sum_probs=60.0
Q ss_pred ccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCC
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFT 168 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~ 168 (262)
|+......+..++..+.+|||+|++.|.+.+..+++.++++|+|+|.++ ..+.+..+++..+.. .
T Consensus 62 Ti~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~-----------g~~~qt~~~l~~~~~----~ 126 (405)
T 2c78_A 62 TINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAAD-----------GPMPQTREHILLARQ----V 126 (405)
T ss_dssp CCSCEEEEEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTT-----------CCCHHHHHHHHHHHH----T
T ss_pred CEEeeeeEeccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCC-----------CCcHHHHHHHHHHHH----c
Confidence 4444444555567899999999999999999999999999999999986 223444555544432 2
Q ss_pred CCe-EEEEeeCCchh
Q psy6623 169 DTS-IILFLNKKDLF 182 (262)
Q Consensus 169 ~~p-iil~~NK~Dl~ 182 (262)
++| +++++||+|+.
T Consensus 127 ~ip~iivviNK~Dl~ 141 (405)
T 2c78_A 127 GVPYIVVFMNKVDMV 141 (405)
T ss_dssp TCCCEEEEEECGGGC
T ss_pred CCCEEEEEEECcccc
Confidence 577 89999999986
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2.1e-09 Score=97.67 Aligned_cols=81 Identities=17% Similarity=0.230 Sum_probs=61.0
Q ss_pred cccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 88 KTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 88 pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
.|++.....+..++..+.+|||+|++.|.+.+..+++.++++|+|+|.++ ..+.+..+.+..+..
T Consensus 52 iTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~-----------g~~~qt~e~l~~~~~---- 116 (397)
T 1d2e_A 52 ITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAAND-----------GPMPQTREHLLLARQ---- 116 (397)
T ss_dssp EEEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTT-----------CSCHHHHHHHHHHHH----
T ss_pred cEEEeeeEEeccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCC-----------CCCHHHHHHHHHHHH----
Confidence 45555555555567899999999999999999999999999999999986 223444455533322
Q ss_pred CCCe-EEEEeeCCchhh
Q psy6623 168 TDTS-IILFLNKKDLFE 183 (262)
Q Consensus 168 ~~~p-iil~~NK~Dl~~ 183 (262)
.++| +++++||+|+..
T Consensus 117 ~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 117 IGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp TTCCCEEEEEECGGGCS
T ss_pred cCCCeEEEEEECcccCC
Confidence 2577 789999999863
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=98.86 E-value=2e-09 Score=99.68 Aligned_cols=112 Identities=13% Similarity=0.190 Sum_probs=66.3
Q ss_pred EEEEeeeccceeeeecCCccccchhhh--------ccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 94 EVHFSFKNLNFKLFDVGGQRSERKKWI--------HCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 94 ~~~~~~~~~~~~i~D~~Gq~~~r~~w~--------~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
...+.+++..+.+|||+|++.....+. .++++++++|+|+|.++ .... +...++..+
T Consensus 264 ~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~----------~~~~-~~~~i~~~l---- 328 (462)
T 3geh_A 264 ESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAAT----------GWTT-GDQEIYEQV---- 328 (462)
T ss_dssp HHEEEETTEEEEECC--------------------CCCCSCSEEEEEEETTT----------CSCH-HHHHHHHHH----
T ss_pred EEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCC----------CCCH-HHHHHHHhc----
Confidence 344566788899999999877654433 36899999999999987 2222 223344333
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhcc
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK 245 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~ 245 (262)
.+.|+++|+||+|+....... .+.. +. ....++.+||++|+||+++|+ .+.+.+.
T Consensus 329 --~~~piivV~NK~Dl~~~~~~~-~~~~----~~----------------~~~~~i~iSAktg~Gi~eL~~--~i~~~~~ 383 (462)
T 3geh_A 329 --KHRPLILVMNKIDLVEKQLIT-SLEY----PE----------------NITQIVHTAAAQKQGIDSLET--AILEIVQ 383 (462)
T ss_dssp --TTSCEEEEEECTTSSCGGGST-TCCC----CT----------------TCCCEEEEBTTTTBSHHHHHH--HHHHHHT
T ss_pred --cCCcEEEEEECCCCCcchhhH-HHHH----hc----------------cCCcEEEEECCCCCCHHHHHH--HHHHHHh
Confidence 236999999999997643211 1111 10 123477899999999999995 4544443
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.4e-09 Score=100.57 Aligned_cols=108 Identities=21% Similarity=0.178 Sum_probs=70.8
Q ss_pred EEEEeeeccceeeeecCC--------ccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 94 EVHFSFKNLNFKLFDVGG--------QRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 94 ~~~~~~~~~~~~i~D~~G--------q~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
.......+..+.+|||+| ++.++..+..++++++++|||+|.++ .+.....++..++..
T Consensus 63 ~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~------------~~~~~d~~l~~~l~~- 129 (456)
T 4dcu_A 63 YSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGRE------------GVTAADEEVAKILYR- 129 (456)
T ss_dssp EEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSS------------CSCHHHHHHHHHHTT-
T ss_pred EEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCC------------CCChHHHHHHHHHHH-
Confidence 334445678999999999 88999999999999999999999764 222333344444433
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+.|++|++||+|+...... ..+++. .| . -..+.+||++|.||.++++.
T Consensus 130 --~~~pvilV~NK~D~~~~~~~---~~e~~~--lg---------------~-~~~~~iSA~~g~gv~~L~~~ 178 (456)
T 4dcu_A 130 --TKKPVVLAVNKLDNTEMRAN---IYDFYS--LG---------------F-GEPYPISGTHGLGLGDLLDA 178 (456)
T ss_dssp --CCSCEEEEEECC------------CCSGG--GS---------------S-SSEEECCTTTCTTHHHHHHH
T ss_pred --cCCCEEEEEECccchhhhhh---HHHHHH--cC---------------C-CceEEeecccccchHHHHHH
Confidence 47899999999998653211 111100 01 0 12458999999999999964
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.5e-09 Score=102.27 Aligned_cols=127 Identities=17% Similarity=0.107 Sum_probs=78.8
Q ss_pred ccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCC
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFT 168 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~ 168 (262)
|+.+....+..++..+.||||+|++.+.+.+..++++++++|+|+|.++-. .+. ...........+.... ...
T Consensus 232 Tid~~~~~~~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~---~e~-~~~~~~qt~e~l~~~~---~lg 304 (611)
T 3izq_1 232 TVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNA---FES-GFDLDGQTKEHMLLAS---SLG 304 (611)
T ss_dssp CCSCSCCEEECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHH---HHT-TCCTTSHHHHHHHHHH---TTT
T ss_pred eEeeeeEEEecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCc---ccc-cchhhhHHHHHHHHHH---HcC
Confidence 444455667778889999999999999999999999999999999998610 000 0001122222222222 123
Q ss_pred CCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-----ccceeecccccccceeeeee
Q psy6623 169 DTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-----FDSICNNKWFTDTSIILFLN 235 (262)
Q Consensus 169 ~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-----~~~~~~~tsA~d~~~I~~~f 235 (262)
..|++|++||+|+....-.. +.. ..+.+...+.. ..+.++++||++|.||.++.
T Consensus 305 i~~iIVVvNKiDl~~~~~~~--~~e-----------i~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~ 363 (611)
T 3izq_1 305 IHNLIIAMNKMDNVDWSQQR--FEE-----------IKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 363 (611)
T ss_dssp CCEEEEEEECTTTTTTCHHH--HHH-----------HHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred CCeEEEEEecccccchhHHH--HHH-----------HHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence 34699999999986411000 000 01122222211 24678899999999999874
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=98.84 E-value=6.5e-09 Score=97.81 Aligned_cols=118 Identities=16% Similarity=0.152 Sum_probs=80.5
Q ss_pred cccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 88 KTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 88 pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
.|+......+..++..+++|||+|++.++..+..+++.++++|+|+|.++- -......++.... .
T Consensus 68 iTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g-----------~~~~t~~~~~~~~----~ 132 (529)
T 2h5e_A 68 ISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKG-----------VEDRTRKLMEVTR----L 132 (529)
T ss_dssp --CCTTEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTC-----------SCHHHHHHHHHHT----T
T ss_pred cceeeeEEEEEECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCcc-----------chHHHHHHHHHHH----H
Confidence 444555667778889999999999999999999999999999999999861 1122333333322 2
Q ss_pred CCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcch-hHHHHHHhhh--ccceeecccccccceeeeeehh
Q psy6623 168 TDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGE-RNRMQESLKL--FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 168 ~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~-~~~i~~~f~~--~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.++|+++|+||+|+..... .+ .+.+.+.+.. .++.+..+||+++.||..++..
T Consensus 133 ~~ipiivviNK~Dl~~~~~-----------------~~~~~~i~~~l~~~~~~~~~pi~sa~~~~Gv~dl~~~ 188 (529)
T 2h5e_A 133 RDTPILTFMNKLDRDIRDP-----------------MELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKD 188 (529)
T ss_dssp TTCCEEEEEECTTSCCSCH-----------------HHHHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTT
T ss_pred cCCCEEEEEcCcCCccccH-----------------HHHHHHHHHHhCCCccceecceecccCcceeeehhhh
Confidence 4689999999999864210 01 3334444433 1233445899999999888753
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=8.4e-09 Score=88.88 Aligned_cols=126 Identities=13% Similarity=0.117 Sum_probs=66.2
Q ss_pred ecccceeEEEEee--ec--cceeeeecCCc-------cccchhh-------hccccC-------------CCEEEEeeec
Q psy6623 87 VKTTGIVEVHFSF--KN--LNFKLFDVGGQ-------RSERKKW-------IHCFED-------------VTAIIFCVAM 135 (262)
Q Consensus 87 ~pT~Gi~~~~~~~--~~--~~~~i~D~~Gq-------~~~r~~w-------~~~f~~-------------~~~iIfv~dl 135 (262)
.+|+++......+ ++ +++.+|||+|+ +.++.++ ..|++. +|+++++++.
T Consensus 46 ~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~ 125 (274)
T 3t5d_A 46 KKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAP 125 (274)
T ss_dssp ---CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECS
T ss_pred CCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecC
Confidence 5777776655554 33 58999999998 3344444 444443 7899999977
Q ss_pred cccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh
Q psy6623 136 SEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL 215 (262)
Q Consensus 136 s~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~ 215 (262)
+. .........+++.+.. ++|+++|+||+|+....- +... .+.+.+.+..
T Consensus 126 ~~----------~~~~~~d~~~l~~l~~-----~~pvi~V~nK~D~~~~~e----~~~~-----------~~~i~~~l~~ 175 (274)
T 3t5d_A 126 SG----------HGLKPLDIEFMKRLHE-----KVNIIPLIAKADTLTPEE----CQQF-----------KKQIMKEIQE 175 (274)
T ss_dssp CC----------SSCCHHHHHHHHHHTT-----TSCEEEEESSGGGSCHHH----HHHH-----------HHHHHHHHHH
T ss_pred CC----------CCCCHHHHHHHHHHhc-----cCCEEEEEeccCCCCHHH----HHHH-----------HHHHHHHHHH
Confidence 65 1222333444554432 689999999999863210 0000 2334444545
Q ss_pred ccceeecccccccceeeeeehhhHHHhhc
Q psy6623 216 FDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 216 ~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
..+.++.+||++++++.++++ .|...+
T Consensus 176 ~~i~v~~~sa~~~~~~~~l~~--~l~~~~ 202 (274)
T 3t5d_A 176 HKIKIYEFPETDDEEENKLVK--KIKDRL 202 (274)
T ss_dssp TTCCCCCC-----------CH--HHHHTC
T ss_pred cCCeEEcCCCCCChhHHHHHH--HHhcCC
Confidence 667788899999999999985 344443
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.80 E-value=5.3e-09 Score=94.03 Aligned_cols=129 Identities=14% Similarity=0.015 Sum_probs=78.4
Q ss_pred ecccceeEEEEeeeccceeeeecCCc---------cccchhhhccccCCCEEEEeeeccccccccccCcccc-cHHHHHH
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQ---------RSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTN-RMQESLK 156 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq---------~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~-~l~e~~~ 156 (262)
.+|.+.....+.+++..+.+|||+|+ +.+++.+. .+..++++++|+|+++ .. ...+...
T Consensus 211 ~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~----------~~~~~~~~~~ 279 (364)
T 2qtf_A 211 FTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTF----------SENLLIETLQ 279 (364)
T ss_dssp ---CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTS----------CHHHHHHHHH
T ss_pred ccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCC----------CcchHHHHHH
Confidence 35666666777787888999999997 23444444 5789999999999987 21 1233333
Q ss_pred HHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHH---HHHhhhccceeecccccccceeee
Q psy6623 157 LFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRM---QESLKLFDSICNNKWFTDTSIILF 233 (262)
Q Consensus 157 ~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i---~~~f~~~~~~~~~tsA~d~~~I~~ 233 (262)
.+..++......+.|+++|+||+|+....... ....+ ...+......+.++||++|+|+.+
T Consensus 280 ~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~----------------~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~ 343 (364)
T 2qtf_A 280 SSFEILREIGVSGKPILVTLNKIDKINGDLYK----------------KLDLVEKLSKELYSPIFDVIPISALKRTNLEL 343 (364)
T ss_dssp HHHHHHHHHTCCSCCEEEEEECGGGCCSCHHH----------------HHHHHHHHHHHHCSCEEEEEECBTTTTBSHHH
T ss_pred HHHHHHHHhCcCCCCEEEEEECCCCCCchHHH----------------HHHHHHHHHHHhcCCCCcEEEEECCCCcCHHH
Confidence 33333332223578999999999986421000 00111 111101123467899999999999
Q ss_pred eehhhHHHhhc
Q psy6623 234 LNKKDLFEEKI 244 (262)
Q Consensus 234 ~f~~~lL~~~i 244 (262)
+++ ++.+.+
T Consensus 344 L~~--~I~~~l 352 (364)
T 2qtf_A 344 LRD--KIYQLA 352 (364)
T ss_dssp HHH--HHHHHH
T ss_pred HHH--HHHHHh
Confidence 995 444443
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=6.1e-09 Score=94.94 Aligned_cols=113 Identities=14% Similarity=0.090 Sum_probs=73.3
Q ss_pred cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCch
Q psy6623 102 LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl 181 (262)
..+.+||++|++.+.+.+......++++|+|+|.++ .-...++.+.+..+.. +...|+++++||+|+
T Consensus 83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~----------g~~~~qt~e~l~~~~~---~~~~~iivviNK~Dl 149 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANE----------PCPRPQTREHLMALQI---IGQKNIIIAQNKIEL 149 (410)
T ss_dssp EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTS----------CSSCHHHHHHHHHHHH---HTCCCEEEEEECGGG
T ss_pred cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCC----------CCCChhHHHHHHHHHH---cCCCcEEEEEECccC
Confidence 579999999999998888888888999999999986 1112233333322211 123589999999999
Q ss_pred hhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh---ccceeecccccccceeeeeehhhHHHhhc
Q psy6623 182 FEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL---FDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 182 ~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~---~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
....-.... .+.+.+.+.. ..+.++++||++|.||.++++ +|...+
T Consensus 150 ~~~~~~~~~---------------~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~--~l~~~~ 198 (410)
T 1kk1_A 150 VDKEKALEN---------------YRQIKEFIEGTVAENAPIIPISALHGANIDVLVK--AIEDFI 198 (410)
T ss_dssp SCHHHHHHH---------------HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHH--HHHHHS
T ss_pred CCHHHHHHH---------------HHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHH--HHHHhC
Confidence 653210000 1122222221 346788999999999999995 454443
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=7.2e-09 Score=98.71 Aligned_cols=66 Identities=14% Similarity=0.089 Sum_probs=52.4
Q ss_pred ceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchh
Q psy6623 103 NFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182 (262)
Q Consensus 103 ~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~ 182 (262)
.+++|||+|++.|...+..+++.++++|+|+|.++ .-..++...+..+.. .++|++|++||+|+.
T Consensus 71 ~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~-----------Gv~~qT~e~l~~l~~----~~vPiIVViNKiDl~ 135 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINE-----------GFKPQTQEALNILRM----YRTPFVVAANKIDRI 135 (594)
T ss_dssp EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTT-----------CCCHHHHHHHHHHHH----TTCCEEEEEECGGGS
T ss_pred CEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCC-----------CccHhHHHHHHHHHH----cCCeEEEEecccccc
Confidence 48999999999999999999999999999999986 122334444443332 368999999999996
Q ss_pred h
Q psy6623 183 E 183 (262)
Q Consensus 183 ~ 183 (262)
.
T Consensus 136 ~ 136 (594)
T 1g7s_A 136 H 136 (594)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.4e-08 Score=87.90 Aligned_cols=106 Identities=17% Similarity=0.142 Sum_probs=68.4
Q ss_pred ccceeeeecCCcc-------------ccchhhhccccCCCEEE-EeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 101 NLNFKLFDVGGQR-------------SERKKWIHCFEDVTAII-FCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 101 ~~~~~i~D~~Gq~-------------~~r~~w~~~f~~~~~iI-fv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
...+.+|||+|+. .++.++..|+++++++| +|+|.++ .-...+...+++.+..
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~----------~~~~~~~~~~~~~~~~--- 190 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS----------DLANSDALKIAKEVDP--- 190 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSS----------CGGGCHHHHHHHHHCT---
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCc----------chhhhHHHHHHHHhCC---
Confidence 4789999999964 45677888999998777 7889875 1122233334444321
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh--cc-ceeecccccccceeeeeehh
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL--FD-SICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~--~~-~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+.|+++|+||+|+..+.- .. .+.+...+.. .. ..++.+||++|.||.++|+.
T Consensus 191 -~~~~~i~V~NK~Dl~~~~~---~~--------------~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~ 246 (299)
T 2aka_B 191 -QGQRTIGVITKLDLMDEGT---DA--------------RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAA 246 (299)
T ss_dssp -TCSSEEEEEECGGGSCTTC---CC--------------HHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHH
T ss_pred -CCCeEEEEEEccccCCCCc---hH--------------HHHHhCCcCcCCCCcEEEECCChhhccccccHHHH
Confidence 3689999999999965321 00 1111111100 11 24678999999999999964
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2.8e-08 Score=84.61 Aligned_cols=130 Identities=10% Similarity=0.019 Sum_probs=72.7
Q ss_pred ccceeEEEEeeeccceeeeecCCccccch-----------hhhccccCCCEEEEeeeccccccccccCcccccHHHHHHH
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRSERK-----------KWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKL 157 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~-----------~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~ 157 (262)
|.......+..++..+.+|||+|+..... ....++++++++|+|+|++++. ........+
T Consensus 58 t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~---------~~~~~~~~~ 128 (260)
T 2xtp_A 58 TKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYT---------SQDQQAAQR 128 (260)
T ss_dssp CCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCC---------HHHHHHHHH
T ss_pred eeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCC---------HHHHHHHHH
Confidence 34444455666788899999999865432 2234789999999999998621 222334455
Q ss_pred HHHHHhCCCCCCCeEEEEee-CCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhcc--ceeecccccccceeeee
Q psy6623 158 FDSICNNKWFTDTSIILFLN-KKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFD--SICNNKWFTDTSIILFL 234 (262)
Q Consensus 158 ~~~i~~~~~~~~~piil~~N-K~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~--~~~~~tsA~d~~~I~~~ 234 (262)
+..+... .. ..|+++++| |+|+....+. .+..+. ...+..-+...+..+- +..+.+||++|.||.++
T Consensus 129 l~~~~~~-~~-~~~~i~vv~nK~Dl~~~~~~-----~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l 198 (260)
T 2xtp_A 129 VKEIFGE-DA-MGHTIVLFTHKEDLNGGSLM-----DYMHDS---DNKALSKLVAACGGRICAFNNRAEGSNQDDQVKEL 198 (260)
T ss_dssp HHHHHCG-GG-GGGEEEEEECGGGGTTCCHH-----HHHHHC---CCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHH
T ss_pred HHHHhCc-hh-hccEEEEEEcccccCCccHH-----HHHHhc---chHHHHHHHHHhCCeEEEecCcccccccHHHHHHH
Confidence 5555432 11 245555555 9998642111 100000 0000111122222211 22278999999999999
Q ss_pred ehh
Q psy6623 235 NKK 237 (262)
Q Consensus 235 f~~ 237 (262)
|+.
T Consensus 199 ~~~ 201 (260)
T 2xtp_A 199 MDC 201 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 953
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.2e-08 Score=84.24 Aligned_cols=85 Identities=14% Similarity=0.234 Sum_probs=58.8
Q ss_pred ccceeEEEEeeeccceeeeecCC-----------ccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHH
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGG-----------QRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKL 157 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~G-----------q~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~ 157 (262)
|.......+.+++..+.+|||+| ++.+++.+..++++++++|+|+|++.++ .....++.+
T Consensus 65 t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~---------~~~~~~l~~ 135 (239)
T 3lxx_A 65 TKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYT---------EEEHKATEK 135 (239)
T ss_dssp CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCS---------SHHHHHHHH
T ss_pred eeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCC---------HHHHHHHHH
Confidence 34445556677788999999999 5567777788889999999999998642 222344444
Q ss_pred HHHHHhCCCCCCCeEEEEeeCCchhhh
Q psy6623 158 FDSICNNKWFTDTSIILFLNKKDLFEE 184 (262)
Q Consensus 158 ~~~i~~~~~~~~~piil~~NK~Dl~~~ 184 (262)
+...+... ...|++||+||+|+...
T Consensus 136 ~~~~~~~~--~~~~~iiv~nK~D~~~~ 160 (239)
T 3lxx_A 136 ILKMFGER--ARSFMILIFTRKDDLGD 160 (239)
T ss_dssp HHHHHHHH--HGGGEEEEEECGGGC--
T ss_pred HHHHhhhh--ccceEEEEEeCCccCCc
Confidence 44443321 13589999999998653
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=3.5e-08 Score=90.71 Aligned_cols=115 Identities=12% Similarity=0.105 Sum_probs=68.8
Q ss_pred EEEeeeccceeeeecCCccccchhh------------hccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 95 VHFSFKNLNFKLFDVGGQRSERKKW------------IHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 95 ~~~~~~~~~~~i~D~~Gq~~~r~~w------------~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
..+.+++..+.+|||+|+++.+... ..+++.++++++|+|.++ ..+..+ ..+.. .+
T Consensus 221 ~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~----------~~~~~~-~~i~~-~l 288 (439)
T 1mky_A 221 DEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQ----------GITRQD-QRMAG-LM 288 (439)
T ss_dssp EEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTT----------CCCHHH-HHHHH-HH
T ss_pred EEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCC----------CCCHHH-HHHHH-HH
Confidence 4456677789999999986554332 236678999999999886 222222 22222 22
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.. .++|+++++||+|+..++-.. .... .+.+...+.. ....++++||++|.||.++|+.
T Consensus 289 ~~---~~~~~ilv~NK~Dl~~~~~~~--~~~~-----------~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~ 348 (439)
T 1mky_A 289 ER---RGRASVVVFNKWDLVVHREKR--YDEF-----------TKLFREKLYFIDYSPLIFTSADKGWNIDRMIDA 348 (439)
T ss_dssp HH---TTCEEEEEEECGGGSTTGGGC--HHHH-----------HHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHH
T ss_pred HH---cCCCEEEEEECccCCCchhhH--HHHH-----------HHHHHHHhccCCCCcEEEEECCCCCCHHHHHHH
Confidence 21 368999999999996532100 0000 1223333322 2345789999999999999975
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.66 E-value=6.1e-09 Score=99.29 Aligned_cols=124 Identities=15% Similarity=0.113 Sum_probs=58.4
Q ss_pred cccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 88 KTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 88 pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
.|+.+....+..++..+.||||+|++.|.+.+..++..++++|+|+|.++-. .+. ...........+..+..
T Consensus 241 iTid~~~~~~~~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~---~e~-gi~~~~qt~e~l~~~~~---- 312 (592)
T 3mca_A 241 VTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNN---FER-GFLENGQTREHAYLLRA---- 312 (592)
T ss_dssp ------------------CCEEESSSEEEEECCC-------CCSEEEEEECC---SST-TSCSCSSHHHHHHHHHH----
T ss_pred eeEEeeEEEEEeCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCc---ccc-ccccchHHHHHHHHHHH----
Confidence 3555555666667889999999999999999999999999999999998610 000 00001222222222221
Q ss_pred CCCe-EEEEeeCCchhhh---hhccCCCcccCCCCCCCCcchhHHHHHHh-hh-----ccceeecccccccceeeeee
Q psy6623 168 TDTS-IILFLNKKDLFEE---KIKKSPLTICFPEYAGKRPGERNRMQESL-KL-----FDSICNNKWFTDTSIILFLN 235 (262)
Q Consensus 168 ~~~p-iil~~NK~Dl~~~---kl~~~~l~~~fp~~~g~~~~~~~~i~~~f-~~-----~~~~~~~tsA~d~~~I~~~f 235 (262)
.++| ++|++||+|+... ++.. + .+.+...+ .. ..+.++++||++|.||.+..
T Consensus 313 lgip~iIvviNKiDl~~~~~~~~~~--i--------------~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~ 374 (592)
T 3mca_A 313 LGISEIVVSVNKLDLMSWSEDRFQE--I--------------KNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKD 374 (592)
T ss_dssp SSCCCEEEEEECGGGGTTCHHHHHH--H--------------HHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCC
T ss_pred cCCCeEEEEEeccccccccHHHHHH--H--------------HHHHHHHHHHhhCCCccceEEEEEecccCccccccc
Confidence 1354 9999999998641 1000 0 12222222 11 24568899999999998543
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.5e-08 Score=87.28 Aligned_cols=97 Identities=12% Similarity=-0.055 Sum_probs=64.6
Q ss_pred CccccchhhhccccCCCEEEEeeeccccccccccCcccc-cHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccC
Q psy6623 111 GQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTN-RMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 189 (262)
Q Consensus 111 Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~-~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~ 189 (262)
+|++++.+...++++++++|+|+|+++ .. ++...-.|+..+-. .++|++|++||+|+..+....
T Consensus 65 i~er~~~l~r~~~~naD~vliV~d~~~----------p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~- 129 (302)
T 2yv5_A 65 VEERKNLLIRPKVANVDRVIIVETLKM----------PEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKK- 129 (302)
T ss_dssp ECCCSCEEETTEEESCCEEEEEECSTT----------TTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHH-
T ss_pred eCChHHHHhHHHHHhcCEEEEEEECCC----------CCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccH-
Confidence 488888889999999999999999997 22 33322333332222 478999999999996432000
Q ss_pred CCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 190 PLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 190 ~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
. ..-..+.+....+.++++||++|+||+++|..
T Consensus 130 ---~------------~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~ 162 (302)
T 2yv5_A 130 ---E------------LERWISIYRDAGYDVLKVSAKTGEGIDELVDY 162 (302)
T ss_dssp ---H------------HHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred ---H------------HHHHHHHHHHCCCeEEEEECCCCCCHHHHHhh
Confidence 0 01111222223456889999999999998863
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=98.64 E-value=2.7e-08 Score=100.18 Aligned_cols=74 Identities=22% Similarity=0.268 Sum_probs=55.5
Q ss_pred EEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCe-EE
Q psy6623 95 VHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTS-II 173 (262)
Q Consensus 95 ~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~p-ii 173 (262)
..+..++..+.+|||+|++.|.+.+..++..++++|+|+|.++- .+.+..+++..+.. .++| ++
T Consensus 352 v~f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdG-----------v~~QTrEhL~ll~~----lgIP~II 416 (1289)
T 3avx_A 352 VEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG-----------PMPQTREHILLGRQ----VGVPYII 416 (1289)
T ss_dssp EEEECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTC-----------SCTTHHHHHHHHHH----HTCSCEE
T ss_pred EEEcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCcc-----------CcHHHHHHHHHHHH----cCCCeEE
Confidence 34555678999999999999999999999999999999999872 12223333332221 2577 89
Q ss_pred EEeeCCchhh
Q psy6623 174 LFLNKKDLFE 183 (262)
Q Consensus 174 l~~NK~Dl~~ 183 (262)
|++||+|+..
T Consensus 417 VVINKiDLv~ 426 (1289)
T 3avx_A 417 VFLNKCDMVD 426 (1289)
T ss_dssp EEEECCTTCC
T ss_pred EEEeeccccc
Confidence 9999999864
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.63 E-value=3e-08 Score=88.97 Aligned_cols=119 Identities=10% Similarity=0.100 Sum_probs=55.6
Q ss_pred ecccceeEEEEee--ec--cceeeeecCCc-------cccchhhh-------ccccCCC-------------EEEEeeec
Q psy6623 87 VKTTGIVEVHFSF--KN--LNFKLFDVGGQ-------RSERKKWI-------HCFEDVT-------------AIIFCVAM 135 (262)
Q Consensus 87 ~pT~Gi~~~~~~~--~~--~~~~i~D~~Gq-------~~~r~~w~-------~~f~~~~-------------~iIfv~dl 135 (262)
.+|+++....+.+ ++ +.+++|||+|+ ++++.++. .|+++++ +++|+++.
T Consensus 76 ~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~ 155 (361)
T 2qag_A 76 ERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISP 155 (361)
T ss_dssp --CEEEEEEEEC----CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECS
T ss_pred CCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEec
Confidence 3566665544433 33 47899999999 88888887 7776544 46666654
Q ss_pred cccccccccCcccccHHHHH-HHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhh
Q psy6623 136 SEYDQVLHEDETTNRMQESL-KLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLK 214 (262)
Q Consensus 136 s~~d~~~~e~~~~~~l~e~~-~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~ 214 (262)
+. .++.+.. .+++. +. .++|+++|+||+|+...+-.. .+ ..-+.+...
T Consensus 156 ~~-----------~~l~~~d~~~~~~-l~----~~~piIlV~NK~Dl~~~~ev~----~~-----------k~~i~~~~~ 204 (361)
T 2qag_A 156 FG-----------HGLKPLDVAFMKA-IH----NKVNIVPVIAKADTLTLKERE----RL-----------KKRILDEIE 204 (361)
T ss_dssp SS-----------SSCCHHHHHHHHH-TC----S-SCEEEEEECCSSSCHHHHH----HH-----------HHHHHHHTT
T ss_pred CC-----------CCcchhHHHHHHH-hc----cCCCEEEEEECCCCCCHHHHH----HH-----------HHHHHHHHH
Confidence 32 2333322 23333 22 468999999999987532100 00 122333333
Q ss_pred hccceeecccccccceeeeeehh
Q psy6623 215 LFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 215 ~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
...+.++.+||++|.+ .+.|..
T Consensus 205 ~~~i~~~~~Sa~~~~~-~e~~~~ 226 (361)
T 2qag_A 205 EHNIKIYHLPDAESDE-DEDFKE 226 (361)
T ss_dssp CC-CCSCCCC----------CHH
T ss_pred HCCCCEEeCCCcCCCc-chhHHH
Confidence 3567788999999999 888853
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=98.52 E-value=2.4e-07 Score=80.93 Aligned_cols=114 Identities=16% Similarity=0.116 Sum_probs=71.5
Q ss_pred EeeeccceeeeecCCcc---------ccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 97 FSFKNLNFKLFDVGGQR---------SERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 97 ~~~~~~~~~i~D~~Gq~---------~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
+..++..+.+|||+|+. .++..+..+++.++++++|+|.+++ ..... ..++.+. .
T Consensus 51 ~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~----------~~~~~--~i~~~l~-~--- 114 (301)
T 1ega_A 51 HTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRW----------TPDDE--MVLNKLR-E--- 114 (301)
T ss_dssp EEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCC----------CHHHH--HHHHHHH-S---
T ss_pred EEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCCC----------CHHHH--HHHHHHH-h---
Confidence 34456789999999997 3445567788999999999998752 11111 2222222 1
Q ss_pred CCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeehhhHHHhhcc
Q psy6623 168 TDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNKKDLFEEKIK 245 (262)
Q Consensus 168 ~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~~~lL~~~i~ 245 (262)
.+.|++|++||+|+...+-. + .+.+.+......+ .++.+||++|.|+..+++ .+...+.
T Consensus 115 ~~~P~ilvlNK~D~~~~~~~---~--------------~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~--~i~~~l~ 174 (301)
T 1ega_A 115 GKAPVILAVNKVDNVQEKAD---L--------------LPHLQFLASQMNFLDIVPISAETGLNVDTIAA--IVRKHLP 174 (301)
T ss_dssp SSSCEEEEEESTTTCCCHHH---H--------------HHHHHHHHTTSCCSEEEECCTTTTTTHHHHHH--HHHTTCC
T ss_pred cCCCEEEEEECcccCccHHH---H--------------HHHHHHHHHhcCcCceEEEECCCCCCHHHHHH--HHHHhCC
Confidence 36899999999998641100 0 1111111111223 467899999999999995 4554443
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.8e-07 Score=90.32 Aligned_cols=79 Identities=13% Similarity=0.053 Sum_probs=60.5
Q ss_pred ccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCC
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFT 168 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~ 168 (262)
|+......+..+++.+++|||+|+..++..+..+++.++++|+|+|.++ .-......++..+.. .
T Consensus 61 ti~~~~~~~~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~-----------g~~~qt~~~~~~~~~----~ 125 (665)
T 2dy1_A 61 TVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEA-----------GVQVGTERAWTVAER----L 125 (665)
T ss_dssp CCSCEEEEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTT-----------CSCHHHHHHHHHHHH----T
T ss_pred eEEecceEEeeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCc-----------ccchhHHHHHHHHHH----c
Confidence 3334455566678899999999999999999999999999999999875 112333455555443 3
Q ss_pred CCeEEEEeeCCchh
Q psy6623 169 DTSIILFLNKKDLF 182 (262)
Q Consensus 169 ~~piil~~NK~Dl~ 182 (262)
++|+++++||+|+.
T Consensus 126 ~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 126 GLPRMVVVTKLDKG 139 (665)
T ss_dssp TCCEEEEEECGGGC
T ss_pred cCCEEEEecCCchh
Confidence 68999999999985
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=98.49 E-value=1.5e-07 Score=91.20 Aligned_cols=84 Identities=15% Similarity=0.077 Sum_probs=62.8
Q ss_pred eeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 85 ~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
.+.+|++.....+.+++..+++|||+|+..++..+..+++.++++|+|+|.++. . .......|..+..
T Consensus 60 ~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g----------~-~~~t~~~~~~~~~- 127 (691)
T 1dar_A 60 ERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQG----------V-EPQSETVWRQAEK- 127 (691)
T ss_dssp -------CCEEEEEETTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTC----------S-CHHHHHHHHHHHH-
T ss_pred hcccccccceEEEEECCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCC----------c-chhhHHHHHHHHH-
Confidence 345777777777888889999999999999999999999999999999999872 2 2333445554443
Q ss_pred CCCCCCeEEEEeeCCchhh
Q psy6623 165 KWFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~~ 183 (262)
.++|+++|+||+|+..
T Consensus 128 ---~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 128 ---YKVPRIAFANKMDKTG 143 (691)
T ss_dssp ---TTCCEEEEEECTTSTT
T ss_pred ---cCCCEEEEEECCCccc
Confidence 3689999999999865
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=2e-07 Score=92.22 Aligned_cols=68 Identities=13% Similarity=0.108 Sum_probs=55.3
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
+..+++|||+|+..|+..|..+++.++++|+|+|.++ ....+ ....|..... .++|+++|+||+|
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~----------g~~~q-t~~~~~~~~~----~~~p~ilviNK~D 161 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIE----------GVCVQ-TETVLRQALG----ERIKPVVVINKVD 161 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTT----------BSCHH-HHHHHHHHHH----TTCEEEEEEECHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCC----------CCCHH-HHHHHHHHHH----cCCCeEEEEECCC
Confidence 6789999999999999999999999999999999997 23333 3444554443 3689999999999
Q ss_pred hhh
Q psy6623 181 LFE 183 (262)
Q Consensus 181 l~~ 183 (262)
+..
T Consensus 162 ~~~ 164 (842)
T 1n0u_A 162 RAL 164 (842)
T ss_dssp HHH
T ss_pred cch
Confidence 974
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.43 E-value=4.6e-08 Score=87.99 Aligned_cols=96 Identities=14% Similarity=0.058 Sum_probs=64.3
Q ss_pred CccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCC
Q psy6623 111 GQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSP 190 (262)
Q Consensus 111 Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~ 190 (262)
.++.|++.+.+++++++++|+|+|+++++ ..+...+...+ .+.|++||+||+|+..+......
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------------~~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~~~~~~ 117 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------------GSWLPGLHRFV-----GNNKVLLVGNKADLIPKSVKHDK 117 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH------------HHCCTTHHHHS-----SSSCEEEEEECGGGSCTTSCHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc------------ccHHHHHHHHh-----CCCcEEEEEEChhcCCcccCHHH
Confidence 57889999999999999999999999742 11122223332 36899999999999642210000
Q ss_pred CcccCCCCCCCCcchhHHHHHHhhhccc---eeecccccccceeeeeehh
Q psy6623 191 LTICFPEYAGKRPGERNRMQESLKLFDS---ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 191 l~~~fp~~~g~~~~~~~~i~~~f~~~~~---~~~~tsA~d~~~I~~~f~~ 237 (262)
+ .+++...+....+ .++.+||++|.||+++++.
T Consensus 118 ~--------------~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~ 153 (368)
T 3h2y_A 118 V--------------KHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADA 153 (368)
T ss_dssp H--------------HHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHH
T ss_pred H--------------HHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhh
Confidence 0 2344433333333 5789999999999998853
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.42 E-value=3e-07 Score=89.18 Aligned_cols=83 Identities=11% Similarity=0.115 Sum_probs=63.0
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+..|++.....+.+++..+++|||+|+..+...+..+++.++++|+|+|.++ .. .......|..+..
T Consensus 59 ~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~----------g~-~~~~~~~~~~~~~-- 125 (693)
T 2xex_A 59 RGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQS----------GV-EPQTETVWRQATT-- 125 (693)
T ss_dssp -----CCSEEEEEETTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTT----------BS-CHHHHHHHHHHHH--
T ss_pred cCceEeeeeEEEEECCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCC----------CC-cHHHHHHHHHHHH--
Confidence 4567776677778888999999999999999999999999999999999987 22 2334455555443
Q ss_pred CCCCCeEEEEeeCCchhh
Q psy6623 166 WFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~ 183 (262)
.++|+++|+||+|+..
T Consensus 126 --~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 126 --YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp --TTCCEEEEEECTTSTT
T ss_pred --cCCCEEEEEECCCccc
Confidence 3689999999999864
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=1.5e-07 Score=80.46 Aligned_cols=84 Identities=10% Similarity=0.166 Sum_probs=56.4
Q ss_pred ccceeEEEEeeeccceeeeecCCccccchhhhcccc---------CCCEEEEeeeccccccccccCcccccH-HHHHHHH
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFE---------DVTAIIFCVAMSEYDQVLHEDETTNRM-QESLKLF 158 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~---------~~~~iIfv~dls~~d~~~~e~~~~~~l-~e~~~~~ 158 (262)
|.......+..++..+.+|||+|+..++.....+++ +++++|||++++... .... ..++..+
T Consensus 71 t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~--------~~~~~~~~~~~l 142 (262)
T 3def_A 71 GLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA--------VDELDKQVVIAI 142 (262)
T ss_dssp CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC--------CCHHHHHHHHHH
T ss_pred ceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC--------CCHHHHHHHHHH
Confidence 444555666778889999999999888766655554 789999999887511 1111 2344444
Q ss_pred HHHHhCCCCCCCeEEEEeeCCchh
Q psy6623 159 DSICNNKWFTDTSIILFLNKKDLF 182 (262)
Q Consensus 159 ~~i~~~~~~~~~piil~~NK~Dl~ 182 (262)
...+... ...|+++++||+|+.
T Consensus 143 ~~~~~~~--~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 143 TQTFGKE--IWCKTLLVLTHAQFS 164 (262)
T ss_dssp HHHHCGG--GGGGEEEEEECTTCC
T ss_pred HHHhchh--hhcCEEEEEeCcccC
Confidence 4444221 124899999999984
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=98.41 E-value=3.2e-07 Score=89.10 Aligned_cols=83 Identities=12% Similarity=0.073 Sum_probs=63.6
Q ss_pred eecccceeEEEEeeec-------cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHH
Q psy6623 86 RVKTTGIVEVHFSFKN-------LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLF 158 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~-------~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~ 158 (262)
+..|++.....+.+++ ..+++|||+|+..|...+..+++.++++|+|+|.++- ........|
T Consensus 59 rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g-----------v~~qt~~~~ 127 (704)
T 2rdo_7 59 RGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGG-----------VQPQSETVW 127 (704)
T ss_pred cCceeeeceEEEEECCccccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCC-----------CcHHHHHHH
Confidence 3456665556666666 8999999999999999999999999999999999872 223344455
Q ss_pred HHHHhCCCCCCCeEEEEeeCCchhh
Q psy6623 159 DSICNNKWFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 159 ~~i~~~~~~~~~piil~~NK~Dl~~ 183 (262)
+.... .++|+++|+||+|+..
T Consensus 128 ~~~~~----~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 128 RQANK----YKVPRIAFVNKMDRMG 148 (704)
T ss_pred HHHHH----cCCCEEEEEeCCCccc
Confidence 44432 3689999999999865
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=98.40 E-value=4.8e-08 Score=87.87 Aligned_cols=99 Identities=12% Similarity=0.014 Sum_probs=64.2
Q ss_pred ecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhc
Q psy6623 108 DVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK 187 (262)
Q Consensus 108 D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~ 187 (262)
....|+.|++.+.+++++++++|+|+|+++++... ...+ ... +.+.|+++++||+|+..+...
T Consensus 54 v~~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~-----~~~l-------~~~-----l~~~piilV~NK~DLl~~~~~ 116 (369)
T 3ec1_A 54 VPLDDDDFLSMLHRIGESKALVVNIVDIFDFNGSF-----IPGL-------PRF-----AADNPILLVGNKADLLPRSVK 116 (369)
T ss_dssp -----CHHHHHHHHHHHHCCEEEEEEETTCSGGGC-----CSSH-------HHH-----CTTSCEEEEEECGGGSCTTCC
T ss_pred CcCCHHHHHHHHHHhhccCcEEEEEEECCCCCCch-----hhHH-------HHH-----hCCCCEEEEEEChhcCCCccC
Confidence 33469999999999999999999999999865211 1111 222 236899999999999653110
Q ss_pred cCCCcccCCCCCCCCcchhHHHHHHhhhccc---eeecccccccceeeeeehh
Q psy6623 188 KSPLTICFPEYAGKRPGERNRMQESLKLFDS---ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 188 ~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~---~~~~tsA~d~~~I~~~f~~ 237 (262)
...+ .+++...+....+ .++.+||++|.|+.++++.
T Consensus 117 ~~~~--------------~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~ 155 (369)
T 3ec1_A 117 YPKL--------------LRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEA 155 (369)
T ss_dssp HHHH--------------HHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHH
T ss_pred HHHH--------------HHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHH
Confidence 0000 3444444444333 5789999999999998863
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=4.3e-07 Score=81.15 Aligned_cols=70 Identities=19% Similarity=0.249 Sum_probs=52.1
Q ss_pred ccceeeeecCCcccc-------------chhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 101 NLNFKLFDVGGQRSE-------------RKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~-------------r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
...+.+|||+|+... +.+...|+++++++|+|+|.++.+ ....+++.+++.+. .
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~---------~~~~~~~~l~~~~~----~ 201 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQD---------LATSDAIKISREVD----P 201 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSC---------GGGCHHHHHHHHSC----T
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCC---------cCCHHHHHHHHHhc----c
Confidence 467999999999886 677888999999999999887521 11234455544442 2
Q ss_pred CCCeEEEEeeCCchhh
Q psy6623 168 TDTSIILFLNKKDLFE 183 (262)
Q Consensus 168 ~~~piil~~NK~Dl~~ 183 (262)
.+.|+++|+||+|+..
T Consensus 202 ~~~~~i~V~nK~Dl~~ 217 (360)
T 3t34_A 202 SGDRTFGVLTKIDLMD 217 (360)
T ss_dssp TCTTEEEEEECGGGCC
T ss_pred cCCCEEEEEeCCccCC
Confidence 3679999999999975
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.25 E-value=2.2e-06 Score=69.78 Aligned_cols=116 Identities=10% Similarity=0.115 Sum_probs=67.0
Q ss_pred EeeeccceeeeecCCccc----------cchhhhccc---cCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh
Q psy6623 97 FSFKNLNFKLFDVGGQRS----------ERKKWIHCF---EDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN 163 (262)
Q Consensus 97 ~~~~~~~~~i~D~~Gq~~----------~r~~w~~~f---~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~ 163 (262)
+.+++ .+.+||++|+.. +++....|+ +.++++++++|+++ ..+..+ ..+..++.
T Consensus 68 ~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~----------~~~~~~--~~~~~~~~ 134 (210)
T 1pui_A 68 FEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRH----------PLKDLD--QQMIEWAV 134 (210)
T ss_dssp EEEET-TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTS----------CCCHHH--HHHHHHHH
T ss_pred EEecC-CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCC----------CCchhH--HHHHHHHH
Confidence 33444 788999999842 233333455 57899999999986 222211 11112221
Q ss_pred CCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh--ccceeecccccccceeeeeehhhHHH
Q psy6623 164 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL--FDSICNNKWFTDTSIILFLNKKDLFE 241 (262)
Q Consensus 164 ~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~--~~~~~~~tsA~d~~~I~~~f~~~lL~ 241 (262)
..+.|+++++||+|+....-.... ...+...+.+ ..+...+|||+++.++.++++ +|.
T Consensus 135 ---~~~~~~~~v~nK~D~~s~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~--~l~ 194 (210)
T 1pui_A 135 ---DSNIAVLVLLTKADKLASGARKAQ---------------LNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQ--KLD 194 (210)
T ss_dssp ---HTTCCEEEEEECGGGSCHHHHHHH---------------HHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHH--HHH
T ss_pred ---HcCCCeEEEEecccCCCchhHHHH---------------HHHHHHHHHhcCCCCceEEEeecCCCCHHHHHH--HHH
Confidence 135889999999998642100000 1122222222 135577899999999999995 455
Q ss_pred hhcc
Q psy6623 242 EKIK 245 (262)
Q Consensus 242 ~~i~ 245 (262)
+.+.
T Consensus 195 ~~~~ 198 (210)
T 1pui_A 195 TWFS 198 (210)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 4443
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=2.1e-06 Score=73.44 Aligned_cols=79 Identities=10% Similarity=0.095 Sum_probs=48.9
Q ss_pred EEEeeeccceeeeecCCccccchhhh-------cc--ccCCCEEEEeeeccccccccccCcccccH-HHHHHHHHHHHhC
Q psy6623 95 VHFSFKNLNFKLFDVGGQRSERKKWI-------HC--FEDVTAIIFCVAMSEYDQVLHEDETTNRM-QESLKLFDSICNN 164 (262)
Q Consensus 95 ~~~~~~~~~~~i~D~~Gq~~~r~~w~-------~~--f~~~~~iIfv~dls~~d~~~~e~~~~~~l-~e~~~~~~~i~~~ 164 (262)
..+..++..+.+|||+|+..+..... .| .++++++|+|+|++... .... .+++..+...+..
T Consensus 80 ~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~--------~~~~~~~~~~~l~~~~~~ 151 (270)
T 1h65_A 80 VSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYR--------VDNLDKLVAKAITDSFGK 151 (270)
T ss_dssp EEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCC--------CCHHHHHHHHHHHHHHCG
T ss_pred EEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCc--------CCHHHHHHHHHHHHHhCc
Confidence 34555678899999999977653222 22 35799999999886511 1111 2333333333221
Q ss_pred CCCCCCeEEEEeeCCchhh
Q psy6623 165 KWFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~~ 183 (262)
. ...|+++++||+|+..
T Consensus 152 ~--~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 152 G--IWNKAIVALTHAQFSP 168 (270)
T ss_dssp G--GGGGEEEEEECCSCCC
T ss_pred c--cccCEEEEEECcccCC
Confidence 1 1269999999999853
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=98.10 E-value=1.8e-06 Score=77.00 Aligned_cols=107 Identities=19% Similarity=0.165 Sum_probs=63.8
Q ss_pred ccceeeeecCCcc-------------ccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 101 NLNFKLFDVGGQR-------------SERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 101 ~~~~~i~D~~Gq~-------------~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
...+.+|||+|.. .++.+...|+++.+.+|+++..++-+ -.-.++..+++.+. .
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~---------~~~~~~~~i~~~~~----~ 195 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD---------LANSDALKVAKEVD----P 195 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSC---------GGGCHHHHHHHHHC----T
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCc---------cchhHHHHHHHHhC----c
Confidence 4789999999963 35567778888877666655433311 11123334444442 1
Q ss_pred CCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh--cc-ceeecccccccceeeeeehh
Q psy6623 168 TDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL--FD-SICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 168 ~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~--~~-~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+.|+++|+||+|+..+.- .. .+.+..+... .. ..++.+||+++.|+.++++.
T Consensus 196 ~~~~~i~V~NK~Dl~~~~~---~~--------------~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~ 251 (353)
T 2x2e_A 196 QGQRTIGVITKLDLMDEGT---DA--------------RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAA 251 (353)
T ss_dssp TCTTEEEEEECGGGSCTTC---CC--------------HHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHH
T ss_pred CCCceEEEeccccccCcch---hH--------------HHHHhCCcccccCCceEEEeCCcccccccccHHHH
Confidence 4689999999999965321 00 0111110000 12 23678999999999999864
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=3.8e-06 Score=81.44 Aligned_cols=69 Identities=14% Similarity=0.282 Sum_probs=50.1
Q ss_pred cceeeeecCCccc---cchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeC
Q psy6623 102 LNFKLFDVGGQRS---ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNK 178 (262)
Q Consensus 102 ~~~~i~D~~Gq~~---~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK 178 (262)
..+.+|||+|... ....+..|+++++++|||+|.++ .....+ ...+...+.. .+.|+++|+||
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~----------~~s~~e-~~~l~~~l~~---~~~~iiiVlNK 239 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQ----------PCTLGE-RRYLENYIKG---RGLTVFFLVNA 239 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTS----------TTCHHH-HHHHHHHTTT---SCCCEEEEEEC
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCC----------ccchhH-HHHHHHHHHh---hCCCEEEEEEC
Confidence 5789999999765 45677889999999999999886 233333 3334333322 25789999999
Q ss_pred Cchhhh
Q psy6623 179 KDLFEE 184 (262)
Q Consensus 179 ~Dl~~~ 184 (262)
+|+...
T Consensus 240 ~Dl~~~ 245 (695)
T 2j69_A 240 WDQVRE 245 (695)
T ss_dssp GGGGGG
T ss_pred cccccc
Confidence 999754
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=2.3e-06 Score=72.40 Aligned_cols=72 Identities=17% Similarity=0.040 Sum_probs=43.0
Q ss_pred ccceeeeecCCccccchhhh------ccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6623 101 NLNFKLFDVGGQRSERKKWI------HCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIIL 174 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~------~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil 174 (262)
+..+.+|||+|+......+. .++.+ +.+|+++|.+.... ...+............ ..+.|+++
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~-------~~~~~~~~~~~~~~~~---~~~~p~~i 176 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKK-------PNDYCFVRFFALLIDL---RLGATTIP 176 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCS-------HHHHHHHHHHHHHHHH---HHTSCEEE
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcC-------HHHHHHHHHHHHHHhc---ccCCCeEE
Confidence 35789999999977544322 24567 89999999875210 1112211111111111 12579999
Q ss_pred EeeCCchhh
Q psy6623 175 FLNKKDLFE 183 (262)
Q Consensus 175 ~~NK~Dl~~ 183 (262)
++||+|+..
T Consensus 177 v~NK~D~~~ 185 (262)
T 1yrb_A 177 ALNKVDLLS 185 (262)
T ss_dssp EECCGGGCC
T ss_pred EEecccccc
Confidence 999999864
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=8.2e-06 Score=74.39 Aligned_cols=112 Identities=13% Similarity=0.118 Sum_probs=68.5
Q ss_pred Eeeec-cceeeeecCCccc----cchhhhcc---ccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCC
Q psy6623 97 FSFKN-LNFKLFDVGGQRS----ERKKWIHC---FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFT 168 (262)
Q Consensus 97 ~~~~~-~~~~i~D~~Gq~~----~r~~w~~~---f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~ 168 (262)
+...+ ..+.+||++|... .+.+...+ .+.++.+|+++|+++ . ....+....+.+..+. +.+.
T Consensus 199 V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls~--~------~~~~ls~g~~el~~la--~aL~ 268 (416)
T 1udx_A 199 VEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAAD--E------PLKTLETLRKEVGAYD--PALL 268 (416)
T ss_dssp EECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTS--C------HHHHHHHHHHHHHHHC--HHHH
T ss_pred EEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCcc--C------CHHHHHHHHHHHHHHh--HHhh
Confidence 33443 6789999999843 22232233 356999999999971 1 1233333333333321 1233
Q ss_pred CCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 169 DTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 169 ~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
..|.+|++||+|+..... ...+.+.+....+.++.+||++++||+++++.
T Consensus 269 ~~P~ILVlNKlDl~~~~~-------------------~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~ 318 (416)
T 1udx_A 269 RRPSLVALNKVDLLEEEA-------------------VKALADALAREGLAVLPVSALTGAGLPALKEA 318 (416)
T ss_dssp HSCEEEEEECCTTSCHHH-------------------HHHHHHHHHTTTSCEEECCTTTCTTHHHHHHH
T ss_pred cCCEEEEEECCChhhHHH-------------------HHHHHHHHHhcCCeEEEEECCCccCHHHHHHH
Confidence 578999999999864210 22233333334566889999999999999964
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=97.96 E-value=7.9e-06 Score=71.09 Aligned_cols=71 Identities=24% Similarity=0.334 Sum_probs=48.9
Q ss_pred eccceeeeecCCccc-------------cchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 100 KNLNFKLFDVGGQRS-------------ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~-------------~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.+..+.+|||+|... ++..+..|+++++++|+|+|.++-+. .. .+...+++.+. .
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~-------~~--~~~~~i~~~~~-~-- 196 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL-------AN--SDALQLAKEVD-P-- 196 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS-------TT--CSHHHHHHHHC-S--
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch-------hh--hHHHHHHHHhC-C--
Confidence 357899999999864 56677889999999999999865210 00 11122333332 1
Q ss_pred CCCCeEEEEeeCCchhh
Q psy6623 167 FTDTSIILFLNKKDLFE 183 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~ 183 (262)
.+.|+++|+||+|+..
T Consensus 197 -~~~~~i~v~NK~Dl~~ 212 (315)
T 1jwy_B 197 -EGKRTIGVITKLDLMD 212 (315)
T ss_dssp -SCSSEEEEEECTTSSC
T ss_pred -CCCcEEEEEcCcccCC
Confidence 3689999999999864
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=1.1e-05 Score=70.25 Aligned_cols=103 Identities=11% Similarity=0.111 Sum_probs=51.2
Q ss_pred cceeeeecCCc-------cccchhhh-------ccccCCC-------------EEEEeeeccccccccccCcccccHHHH
Q psy6623 102 LNFKLFDVGGQ-------RSERKKWI-------HCFEDVT-------------AIIFCVAMSEYDQVLHEDETTNRMQES 154 (262)
Q Consensus 102 ~~~~i~D~~Gq-------~~~r~~w~-------~~f~~~~-------------~iIfv~dls~~d~~~~e~~~~~~l~e~ 154 (262)
..+++||++|+ +.++.++. .|+++.+ +++|+.+.+. .++...
T Consensus 76 ~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-----------~~Ld~~ 144 (301)
T 2qnr_A 76 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-----------HGLKPL 144 (301)
T ss_dssp EEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-----------SSCCHH
T ss_pred cCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-----------cCCCHH
Confidence 57899999999 67777766 6665543 3555555332 112111
Q ss_pred -HHHHHHHHhCCCCCCCeEEEEeeCCchhhhh-hccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceee
Q psy6623 155 -LKLFDSICNNKWFTDTSIILFLNKKDLFEEK-IKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIIL 232 (262)
Q Consensus 155 -~~~~~~i~~~~~~~~~piil~~NK~Dl~~~k-l~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~ 232 (262)
.++++.+. .++++++|+||.|+..++ +... .+.+.+......+.++++||+++ ||+
T Consensus 145 ~~~~l~~l~-----~~~~iilV~~K~Dl~~~~e~~~~----------------~~~~~~~~~~~~~~~~e~Sa~~~-~v~ 202 (301)
T 2qnr_A 145 DVAFMKAIH-----NKVNIVPVIAKADTLTLKERERL----------------KKRILDEIEEHNIKIYHLPDAES-DED 202 (301)
T ss_dssp HHHHHHHHT-----TTSCEEEEECCGGGSCHHHHHHH----------------HHHHHHHHHHTTCCCCCCC--------
T ss_pred HHHHHHHHH-----hcCCEEEEEEeCCCCCHHHHHHH----------------HHHHHHHHHHcCCeEEecCCccc-ccc
Confidence 23333332 357999999999997432 1000 12233333335677899999999 999
Q ss_pred eeehh
Q psy6623 233 FLNKK 237 (262)
Q Consensus 233 ~~f~~ 237 (262)
++|..
T Consensus 203 e~f~~ 207 (301)
T 2qnr_A 203 EDFKE 207 (301)
T ss_dssp --CHH
T ss_pred HHHHH
Confidence 99963
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.83 E-value=3.7e-05 Score=63.06 Aligned_cols=106 Identities=9% Similarity=-0.007 Sum_probs=61.9
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+..+.+||++|+-... .++..+.+++|+|+|.++.. .... .+.... +.|++|++||+
T Consensus 107 ~~~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~---------~~~~----~~~~~~------~~~~iiv~NK~ 164 (221)
T 2wsm_A 107 SDCDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGD---------DVVE----KHPEIF------RVADLIVINKV 164 (221)
T ss_dssp TTCSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCT---------THHH----HCHHHH------HTCSEEEEECG
T ss_pred CCCCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcc---------hhhh----hhhhhh------hcCCEEEEecc
Confidence 34678899999962111 11223678899999998721 1111 111111 46889999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
|+.... ...+... .+++... ...+.++.+||++|+||.++|+ +|...+
T Consensus 165 Dl~~~~--~~~~~~~-----------~~~~~~~--~~~~~i~~~Sa~~g~gi~~l~~--~l~~~~ 212 (221)
T 2wsm_A 165 ALAEAV--GADVEKM-----------KADAKLI--NPRAKIIEMDLKTGKGFEEWID--FLRGIL 212 (221)
T ss_dssp GGHHHH--TCCHHHH-----------HHHHHHH--CTTSEEEECBTTTTBTHHHHHH--HHHHHH
T ss_pred cCCcch--hhHHHHH-----------HHHHHHh--CCCCeEEEeecCCCCCHHHHHH--HHHHHH
Confidence 996532 0011000 2222221 1235678999999999999995 455544
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.80 E-value=1.4e-05 Score=75.52 Aligned_cols=68 Identities=21% Similarity=0.192 Sum_probs=50.1
Q ss_pred cceeeeecCCccc-----------cchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCC
Q psy6623 102 LNFKLFDVGGQRS-----------ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDT 170 (262)
Q Consensus 102 ~~~~i~D~~Gq~~-----------~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~ 170 (262)
..+.+|||+|... +...+..++++++++|+|+|.++. ....+...+++.+.. .+.
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~----------~~~~~~~~~l~~l~~----~~~ 219 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKL----------EISDEFSEAIGALRG----HED 219 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSC----------CCCHHHHHHHHHTTT----CGG
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcC----------CCCHHHHHHHHHHHh----cCC
Confidence 3689999999875 556777889999999999999862 223334444444322 357
Q ss_pred eEEEEeeCCchhh
Q psy6623 171 SIILFLNKKDLFE 183 (262)
Q Consensus 171 piil~~NK~Dl~~ 183 (262)
|+++|+||+|+..
T Consensus 220 pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 220 KIRVVLNKADMVE 232 (550)
T ss_dssp GEEEEEECGGGSC
T ss_pred CEEEEEECCCccC
Confidence 9999999999863
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=1.3e-05 Score=71.56 Aligned_cols=101 Identities=13% Similarity=0.101 Sum_probs=61.7
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+..+.+|||+|-.. -.....+.++++|+|+|.+.-++. ..+. ....+.|++|++||+
T Consensus 170 ~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~-------~~l~------------~~~~~~p~ivVlNK~ 227 (355)
T 3p32_A 170 AGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQL-------QGIK------------KGVLELADIVVVNKA 227 (355)
T ss_dssp TTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTT-------TTCC------------TTSGGGCSEEEEECC
T ss_pred CCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccH-------HHHH------------HhHhhcCCEEEEECC
Confidence 467899999999432 233345899999999997752211 0000 112346899999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-------ccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-------FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-------~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+..+.-.... ...+...+.. ....++.+||++|+||.++++.
T Consensus 228 Dl~~~~~~~~~---------------~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~ 277 (355)
T 3p32_A 228 DGEHHKEARLA---------------ARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDT 277 (355)
T ss_dssp CGGGHHHHHHH---------------HHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHH
T ss_pred CCcChhHHHHH---------------HHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHH
Confidence 98643210000 1112221110 1245788999999999999964
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=97.78 E-value=1.3e-05 Score=72.75 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=24.1
Q ss_pred ccceeeeecCCccc----cchhh---hccccCCCEEEEeeeccc
Q psy6623 101 NLNFKLFDVGGQRS----ERKKW---IHCFEDVTAIIFCVAMSE 137 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~----~r~~w---~~~f~~~~~iIfv~dls~ 137 (262)
.+.+.+|||+|+.. .+.++ ..++++++++|+|+|+++
T Consensus 70 ~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~ 113 (397)
T 1wxq_A 70 LIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (397)
T ss_dssp EEEEEEEECC---------------CCCSSTTCSEEEEEEETTC
T ss_pred eEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEeccc
Confidence 36799999999854 23333 356799999999999987
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=6.7e-05 Score=70.75 Aligned_cols=85 Identities=18% Similarity=0.264 Sum_probs=65.9
Q ss_pred eeeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh
Q psy6623 84 RTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN 163 (262)
Q Consensus 84 ~~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~ 163 (262)
+.|--|+--....+.+++..++|.||+|+--|..--..-.+-++++|+|+|..+ --...+...|+....
T Consensus 82 reRGITI~s~~~~~~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~-----------GV~~qT~~v~~~a~~ 150 (548)
T 3vqt_A 82 RERGISVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAK-----------GVEAQTRKLMDVCRM 150 (548)
T ss_dssp ------CTTTEEEEEETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTT-----------BSCHHHHHHHHHHHH
T ss_pred HHCCCcEeeceEEEEECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCC-----------CcccccHHHHHHHHH
Confidence 345566666677889999999999999999988777777889999999999986 445666777776664
Q ss_pred CCCCCCCeEEEEeeCCchhh
Q psy6623 164 NKWFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 164 ~~~~~~~piil~~NK~Dl~~ 183 (262)
.++|+++|.||+|...
T Consensus 151 ----~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 151 ----RATPVMTFVNKMDREA 166 (548)
T ss_dssp ----TTCCEEEEEECTTSCC
T ss_pred ----hCCceEEEEecccchh
Confidence 3789999999999754
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00016 Score=65.83 Aligned_cols=54 Identities=17% Similarity=0.061 Sum_probs=24.7
Q ss_pred CCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 169 DTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 169 ~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
++|+|+|+||+|+...+- +..+ ..-+.+.+....+.++.+||+++.++..+|..
T Consensus 167 ~v~iIlVinK~Dll~~~e----v~~~-----------k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~ 220 (418)
T 2qag_C 167 KVNIIPLIAKADTLTPEE----CQQF-----------KKQIMKEIQEHKIKIYEFPETDDEEENKLVKK 220 (418)
T ss_dssp TSEEEEEEESTTSSCHHH----HHHH-----------HHHHHHHHHHHTCCCCCCC-------------
T ss_pred cCcEEEEEEcccCccHHH----HHHH-----------HHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHH
Confidence 689999999999864221 1000 12233333335677889999999999987753
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00015 Score=62.65 Aligned_cols=93 Identities=11% Similarity=0.067 Sum_probs=56.6
Q ss_pred cCCcc-ccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhc
Q psy6623 109 VGGQR-SERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK 187 (262)
Q Consensus 109 ~~Gq~-~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~ 187 (262)
..|+. ..++......+.+++||.|+|..+- ..... ..+..++ .+.|+++++||+||.....
T Consensus 6 ~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p----------~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~- 67 (282)
T 1puj_A 6 FPGHMAKARREVTEKLKLIDIVYELVDARIP----------MSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAV- 67 (282)
T ss_dssp ---CTTHHHHHHHHHGGGCSEEEEEEETTST----------TTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHH-
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEEeCCCC----------CccCC--HHHHHHH-----CCCCEEEEEECcccCCHHH-
Confidence 45553 4555566678999999999999872 11110 1222222 4789999999999965211
Q ss_pred cCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 188 KSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 188 ~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+-..+.+....+.++.+||+++.|+.++++.
T Consensus 68 ------------------~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~ 99 (282)
T 1puj_A 68 ------------------TQQWKEHFENQGIRSLSINSVNGQGLNQIVPA 99 (282)
T ss_dssp ------------------HHHHHHHHHTTTCCEEECCTTTCTTGGGHHHH
T ss_pred ------------------HHHHHHHHHhcCCcEEEEECCCcccHHHHHHH
Confidence 00111112223355778999999999988864
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.27 E-value=8.1e-05 Score=71.47 Aligned_cols=83 Identities=17% Similarity=0.218 Sum_probs=64.4
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
|--|+-.....+.+++..+++.||+|+..|..--..-.+-+|++|+|+|..+ --...+...|+.....
T Consensus 51 RGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~-----------GV~~qT~~v~~~a~~~- 118 (638)
T 3j25_A 51 RGITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKD-----------GVQAQTRILFHALRKM- 118 (638)
T ss_dssp HSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSC-----------TTCSHHHHHHHHHHHH-
T ss_pred CCCcEEeeeEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCC-----------CCcHHHHHHHHHHHHc-
Confidence 4455555566678899999999999999988888888899999999999986 2233455666665543
Q ss_pred CCCCCeEEEEeeCCchhh
Q psy6623 166 WFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~ 183 (262)
++|.++|.||+|...
T Consensus 119 ---~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 119 ---GIPTIFFINKIDQNG 133 (638)
T ss_dssp ---TCSCEECCEECCSSS
T ss_pred ---CCCeEEEEecccccc
Confidence 688999999999754
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0001 Score=65.32 Aligned_cols=100 Identities=10% Similarity=0.074 Sum_probs=58.3
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
++..+.+|||+|....... ..+.++++|+|+|.+..+.. ..+.. .. .+.|.++|+||+
T Consensus 147 ~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~-------~~l~~------~~------~~~p~ivv~NK~ 204 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDL-------QGIKK------GL------MEVADLIVINKD 204 (341)
T ss_dssp TTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC-------------CCCCH------HH------HHHCSEEEECCC
T ss_pred cCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHH-------HHHHH------hh------hcccCEEEEECC
Confidence 4678999999996544322 35899999999998763321 11110 01 135789999999
Q ss_pred chhhhh-hccCCCcccCCCCCCCCcchhHHHHHHhhh-----c--cceeecccccccceeeeeehh
Q psy6623 180 DLFEEK-IKKSPLTICFPEYAGKRPGERNRMQESLKL-----F--DSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~k-l~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-----~--~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+.... .... ...+...+.. . ...++.+||++|+||.++++.
T Consensus 205 Dl~~~~~~~~~----------------~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~ 254 (341)
T 2p67_A 205 DGDNHTNVAIA----------------RHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHA 254 (341)
T ss_dssp CTTCHHHHHHH----------------HHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHH
T ss_pred CCCChHHHHHH----------------HHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHH
Confidence 986421 1000 0111111111 1 234678999999999999953
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00068 Score=60.19 Aligned_cols=101 Identities=11% Similarity=0.021 Sum_probs=56.7
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+..+.++||+|-. .-+....+.++.+++|+|.+.. ....... ..+ -..|.++++||+
T Consensus 165 ~~~~~iliDT~Gi~---~~~~~l~~~~d~vl~V~d~~~~----------~~~~~i~---~~i------l~~~~ivVlNK~ 222 (349)
T 2www_A 165 AGYDIILIETVGVG---QSEFAVADMVDMFVLLLPPAGG----------DELQGIK---RGI------IEMADLVAVTKS 222 (349)
T ss_dssp TTCSEEEEECCCC-----CHHHHHTTCSEEEEEECCC-------------------------------CCSCSEEEECCC
T ss_pred CCCCEEEEECCCcc---hhhhhHHhhCCEEEEEEcCCcc----------hhHHHhH---HHH------HhcCCEEEEeee
Confidence 56788999999953 2244557899999999998862 1111110 011 235789999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhh-------hccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLK-------LFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~-------~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+....-.... ...+..... .....++.+||++|+|+.++++.
T Consensus 223 Dl~~~~~~~~~---------------~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~ 272 (349)
T 2www_A 223 DGDLIVPARRI---------------QAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDK 272 (349)
T ss_dssp SGGGHHHHHHH---------------HHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHH
T ss_pred cCCCchhHHHH---------------HHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHH
Confidence 98642100000 000110000 01124567999999999999853
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00087 Score=65.07 Aligned_cols=68 Identities=12% Similarity=0.128 Sum_probs=55.5
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
+..+++.||+|+-.|..--..-.+-+|++|+|+|..+ --...+...|+..... ++|+++|.||+|
T Consensus 84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDave-----------GV~~qT~~v~~~a~~~----~lp~i~~iNKiD 148 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTS-----------GVEPQSETVWRQANKY----GVPRIVYVNKMD 148 (709)
T ss_dssp CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTT-----------CSCHHHHHHHHHHHHH----TCCEEEEEECSS
T ss_pred CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCC-----------CCchhHHHHHHHHHHc----CCCeEEEEcccc
Confidence 5789999999999887777777888999999999986 3445566677776643 689999999999
Q ss_pred hhh
Q psy6623 181 LFE 183 (262)
Q Consensus 181 l~~ 183 (262)
...
T Consensus 149 r~~ 151 (709)
T 4fn5_A 149 RQG 151 (709)
T ss_dssp STT
T ss_pred ccC
Confidence 753
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0014 Score=58.60 Aligned_cols=37 Identities=14% Similarity=0.268 Sum_probs=29.6
Q ss_pred ccceeeeecCCccccc-------hhhhccccCCCEEEEeeeccc
Q psy6623 101 NLNFKLFDVGGQRSER-------KKWIHCFEDVTAIIFCVAMSE 137 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r-------~~w~~~f~~~~~iIfv~dls~ 137 (262)
+..+++||++|+.... ..+..++++++++++|+|+++
T Consensus 68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 4679999999997653 234456899999999999986
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0019 Score=57.70 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=29.1
Q ss_pred cceeeeecCCccccc----hh---hhccccCCCEEEEeeeccc
Q psy6623 102 LNFKLFDVGGQRSER----KK---WIHCFEDVTAIIFCVAMSE 137 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r----~~---w~~~f~~~~~iIfv~dls~ 137 (262)
..+++||++|+.... .+ +..++++++++|+|+|+++
T Consensus 66 ~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 66 TTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp CEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 579999999998753 23 3345799999999999987
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.001 Score=64.79 Aligned_cols=106 Identities=17% Similarity=0.147 Sum_probs=62.2
Q ss_pred ccceeeeecCCccc-------------cchhhhccc-cCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 101 NLNFKLFDVGGQRS-------------ERKKWIHCF-EDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~-------------~r~~w~~~f-~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
...+.++||+|-.. .+.+...|. ..++.|++|+|.+. .-.-.+.+.+.+.+..
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~----------~~~~~d~l~ll~~L~~--- 215 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS----------DLANSDALKIAKEVDP--- 215 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTS----------CSSSCHHHHHHHHHCT---
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCC----------CcchhHHHHHHHHHHh---
Confidence 35688999999543 122223344 57899999999886 1122233344444432
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhh--hcc-ceeecccccccceeeeeehh
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLK--LFD-SICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~--~~~-~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+.|+++|+||+|+..+.-. . ......+.. ... ..+..+||++|.|+..+.+.
T Consensus 216 -~g~pvIlVlNKiDlv~~~~~---~--------------~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~ea 271 (772)
T 3zvr_A 216 -QGQRTIGVITKLDLMDEGTD---A--------------RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAA 271 (772)
T ss_dssp -TCSSEEEEEECTTSSCTTCC---S--------------HHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHH
T ss_pred -cCCCEEEEEeCcccCCcchh---h--------------HHHHHHHhhhhhccCCceEEecccccccchhHHHH
Confidence 36899999999998642110 0 000000000 011 23667999999999998864
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.00076 Score=55.27 Aligned_cols=54 Identities=13% Similarity=-0.009 Sum_probs=33.7
Q ss_pred CCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 169 DTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 169 ~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+.|.+|++||+|+..++- ..+... .+++.. + ...+.++++||++|+||.++|+.
T Consensus 164 ~~~~iiv~NK~Dl~~~~~--~~~~~~-----------~~~~~~-~-~~~~~~~~~Sa~~g~gv~~l~~~ 217 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVG--ADIKKM-----------ENDAKR-I-NPDAEVVLLSLKTMEGFDKVLEF 217 (226)
T ss_dssp TTCSEEEEECGGGHHHHT--CCHHHH-----------HHHHHH-H-CTTSEEEECCTTTCTTHHHHHHH
T ss_pred hcCCEEEEeccccCchhH--HHHHHH-----------HHHHHH-h-CCCCeEEEEEecCCCCHHHHHHH
Confidence 367899999999975321 000000 122221 1 12456789999999999999953
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0036 Score=54.58 Aligned_cols=90 Identities=12% Similarity=0.048 Sum_probs=52.8
Q ss_pred hhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCC
Q psy6623 119 WIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEY 198 (262)
Q Consensus 119 w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~ 198 (262)
+..-..++|.+++|+|+.+.+ -+.. -+..+-..+. ..++|.+|++||+||..+.....
T Consensus 80 ~R~~~anvD~v~~V~~~~~p~---------~~~~-~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~--------- 137 (307)
T 1t9h_A 80 IRPPICNVDQAVLVFSAVQPS---------FSTA-LLDRFLVLVE---ANDIQPIICITKMDLIEDQDTED--------- 137 (307)
T ss_dssp TTTTEECCCEEEEEEESTTTT---------CCHH-HHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHH---------
T ss_pred hHHHHHhCCEEEEEEeCCCCC---------CCHH-HHHHHHHHHH---HCCCCEEEEEECCccCchhhhHH---------
Confidence 334578999999999987511 1111 2222222222 24688999999999965210000
Q ss_pred CCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 199 AGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 199 ~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
..+-+.+.|......++.+||+++.++..++.
T Consensus 138 ------~~~~~~~~y~~~g~~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 138 ------TIQAYAEDYRNIGYDVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp ------HHHHHHHHHHHHTCCEEECCHHHHTTCTTTGG
T ss_pred ------HHHHHHHHHHhCCCeEEEEecCCCCCHHHHHh
Confidence 01122333333345677899999999887765
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0011 Score=56.42 Aligned_cols=82 Identities=16% Similarity=0.123 Sum_probs=49.1
Q ss_pred chhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccC
Q psy6623 116 RKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICF 195 (262)
Q Consensus 116 r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~f 195 (262)
++.......+++.||.|+|..+-... .+. .++ .. +.|.++++||+||.....
T Consensus 12 ~~~~~~~l~~~D~vl~VvDar~P~~~------~~~------~l~------ll-~k~~iivlNK~DL~~~~~--------- 63 (262)
T 3cnl_A 12 KRQIKDLLRLVNTVVEVRDARAPFAT------SAY------GVD------FS-RKETIILLNKVDIADEKT--------- 63 (262)
T ss_dssp THHHHHHHTTCSEEEEEEETTSTTTT------SCT------TSC------CT-TSEEEEEEECGGGSCHHH---------
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCCcC------cCh------HHH------hc-CCCcEEEEECccCCCHHH---------
Confidence 34455567899999999999862110 010 001 11 689999999999965211
Q ss_pred CCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 196 PEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 196 p~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
.+-..+.+....+.+ .+||+++.|+..+++
T Consensus 64 ----------~~~~~~~~~~~g~~v-~iSa~~~~gi~~L~~ 93 (262)
T 3cnl_A 64 ----------TKKWVEFFKKQGKRV-ITTHKGEPRKVLLKK 93 (262)
T ss_dssp ----------HHHHHHHHHHTTCCE-EECCTTSCHHHHHHH
T ss_pred ----------HHHHHHHHHHcCCeE-EEECCCCcCHHHHHH
Confidence 011111222223445 899999998877664
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.019 Score=51.79 Aligned_cols=38 Identities=13% Similarity=0.192 Sum_probs=25.4
Q ss_pred cceeeeecCCccccch-------hhhccccCCCEEEEeeeccccc
Q psy6623 102 LNFKLFDVGGQRSERK-------KWIHCFEDVTAIIFCVAMSEYD 139 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~-------~w~~~f~~~~~iIfv~dls~~d 139 (262)
..+++||++|+...++ .|..++++++++++|+|+++-+
T Consensus 86 ~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 86 AFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp CEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC----
T ss_pred cccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 3589999999987654 6788899999999999998743
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=94.30 E-value=0.055 Score=48.02 Aligned_cols=51 Identities=14% Similarity=0.024 Sum_probs=31.8
Q ss_pred CCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeee
Q psy6623 169 DTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLN 235 (262)
Q Consensus 169 ~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f 235 (262)
++|.+||+||+||..+.... . .+-....|....+.++.+||+++.++..+.
T Consensus 160 ~~~~iivlNK~DL~~~~~~~-~---------------~~~~~~~y~~~G~~v~~~Sa~~~~gl~~L~ 210 (358)
T 2rcn_A 160 QVEPLIVLNKIDLLDDEGMD-F---------------VNEQMDIYRNIGYRVLMVSSHTQDGLKPLE 210 (358)
T ss_dssp TCEEEEEEECGGGCCHHHHH-H---------------HHHHHHHHHTTTCCEEECBTTTTBTHHHHH
T ss_pred CCCEEEEEECccCCCchhHH-H---------------HHHHHHHHHhCCCcEEEEecCCCcCHHHHH
Confidence 57889999999996532100 0 111223344444567889999998887654
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.012 Score=51.70 Aligned_cols=35 Identities=6% Similarity=0.041 Sum_probs=26.3
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccc
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSE 137 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~ 137 (262)
.+..+.++||+|...-. ....+.++.+++|+|.+.
T Consensus 146 ~~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~ 180 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGA 180 (337)
T ss_dssp TTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC
T ss_pred CCCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCC
Confidence 56789999999975422 223478999999999764
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.12 E-value=0.15 Score=45.52 Aligned_cols=82 Identities=12% Similarity=0.150 Sum_probs=49.8
Q ss_pred ccceeEEEEeeeccceeeeecCCccccch-------hhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHH
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRSERK-------KWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSI 161 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~-------~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i 161 (262)
|+..+...+.+.+.++++.||+|-..-.. ......+.++++++|+|.++ . +.+...+..++
T Consensus 106 T~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~----------p--~~~~~~i~~EL 173 (376)
T 4a9a_A 106 TLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNK----------P--LHHKQIIEKEL 173 (376)
T ss_dssp CCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTS----------H--HHHHHHHHHHH
T ss_pred eeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCc----------c--HHHHHHHHHHH
Confidence 33334445677889999999999643211 12234578999999999986 2 11111111122
Q ss_pred Hh-CCCCCCCeEEEEeeCCchh
Q psy6623 162 CN-NKWFTDTSIILFLNKKDLF 182 (262)
Q Consensus 162 ~~-~~~~~~~piil~~NK~Dl~ 182 (262)
.. ...+.+.|.++++||.|..
T Consensus 174 ~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 174 EGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHTTEEETCCCCCEEEEECSSS
T ss_pred HHhhHhhccCChhhhhhHhhhh
Confidence 11 2234567888999999964
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=81.67 E-value=1.7 Score=40.26 Aligned_cols=65 Identities=11% Similarity=0.171 Sum_probs=39.2
Q ss_pred eccceeeeecCCccccc-hhhhcc-----ccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeE-
Q psy6623 100 KNLNFKLFDVGGQRSER-KKWIHC-----FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSI- 172 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r-~~w~~~-----f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pi- 172 (262)
++..+.|+||+|..... ..+... .-.++.+++|+|.+. ... +......+.. .+|+
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~----------g~~---~~~~a~~~~~-----~~~i~ 243 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASI----------GQA---CEAQAKAFKD-----KVDVA 243 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTC----------CTT---HHHHHHHHHH-----HHCCC
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccc----------ccc---HHHHHHHHHh-----hcCce
Confidence 46789999999976421 222111 227899999999876 111 2222222211 1464
Q ss_pred EEEeeCCchh
Q psy6623 173 ILFLNKKDLF 182 (262)
Q Consensus 173 il~~NK~Dl~ 182 (262)
.|++||.|..
T Consensus 244 gvVlNK~D~~ 253 (504)
T 2j37_W 244 SVIVTKLDGH 253 (504)
T ss_dssp CEEEECTTSC
T ss_pred EEEEeCCccc
Confidence 7889999975
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 262 | ||||
| d1tada1 | 121 | a.66.1.1 (A:57-177) Transducin (alpha subunit), in | 2e-28 | |
| d1cipa1 | 121 | a.66.1.1 (A:61-181) Transducin (alpha subunit), in | 5e-28 | |
| d1zcaa1 | 122 | a.66.1.1 (A:83-204) Transducin (alpha subunit), in | 1e-24 | |
| d1zcba1 | 126 | a.66.1.1 (A:76-201) Transducin (alpha subunit), in | 2e-24 | |
| d1azta1 | 114 | a.66.1.1 (A:88-201) Transducin (alpha subunit), in | 3e-24 | |
| d2bcjq1 | 117 | a.66.1.1 (Q:67-183) Transducin (alpha subunit), in | 5e-24 | |
| d1azta2 | 221 | c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub | 1e-23 | |
| d1azta2 | 221 | c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub | 1e-10 | |
| d1zcba2 | 200 | c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub | 1e-18 | |
| d1zcba2 | 200 | c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub | 5e-07 | |
| d2bcjq2 | 200 | c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub | 8e-17 | |
| d1svsa1 | 195 | c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub | 1e-14 |
| >d1tada1 a.66.1.1 (A:57-177) Transducin (alpha subunit), insertion domain {Cow (Bos taurus) [TaxId: 9913]} Length = 121 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Transducin (alpha subunit), insertion domain superfamily: Transducin (alpha subunit), insertion domain family: Transducin (alpha subunit), insertion domain domain: Transducin (alpha subunit), insertion domain species: Cow (Bos taurus) [TaxId: 9913]
Score = 102 bits (256), Expect = 2e-28
Identities = 40/80 (50%), Positives = 56/80 (70%), Gaps = 1/80 (1%)
Query: 10 DAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDR 69
DA+ + + +E+ +E+ ++RLW DSG+Q CF R++EYQLNDSA Y+L DL+R
Sbjct: 43 DARKLMHMADTIEEG-TMPKEMSDIIQRLWKDSGIQACFDRASEYQLNDSAGYYLSDLER 101
Query: 70 LGAKEYQPTEQDILRTRVKT 89
L Y PTEQD+LR+RVKT
Sbjct: 102 LVTPGYVPTEQDVLRSRVKT 121
|
| >d1cipa1 a.66.1.1 (A:61-181) Transducin (alpha subunit), insertion domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 121 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Transducin (alpha subunit), insertion domain superfamily: Transducin (alpha subunit), insertion domain family: Transducin (alpha subunit), insertion domain domain: Transducin (alpha subunit), insertion domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 101 bits (253), Expect = 5e-28
Identities = 45/80 (56%), Positives = 56/80 (70%), Gaps = 1/80 (1%)
Query: 10 DAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDR 69
DA+ +F V+ + + EL +KRLW DSGVQ CF RS EYQLNDSA Y+L+DLDR
Sbjct: 43 DARQLF-VLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDR 101
Query: 70 LGAKEYQPTEQDILRTRVKT 89
+ Y PT+QD+LRTRVKT
Sbjct: 102 IAQPNYIPTQQDVLRTRVKT 121
|
| >d1zcaa1 a.66.1.1 (A:83-204) Transducin (alpha subunit), insertion domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Transducin (alpha subunit), insertion domain superfamily: Transducin (alpha subunit), insertion domain family: Transducin (alpha subunit), insertion domain domain: Transducin (alpha subunit), insertion domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 92.7 bits (230), Expect = 1e-24
Identities = 31/74 (41%), Positives = 45/74 (60%)
Query: 13 MVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGA 72
M F+ + + + A+ LW DSG++E F R +E+QL +S KYFLD+LDR+G
Sbjct: 48 MAFENKAGLPVEPATFQLYVPALSALWRDSGIREAFSRRSEFQLGESVKYFLDNLDRIGQ 107
Query: 73 KEYQPTEQDILRTR 86
Y P++QDIL R
Sbjct: 108 LNYFPSKQDILLAR 121
|
| >d1zcba1 a.66.1.1 (A:76-201) Transducin (alpha subunit), insertion domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 126 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Transducin (alpha subunit), insertion domain superfamily: Transducin (alpha subunit), insertion domain family: Transducin (alpha subunit), insertion domain domain: Transducin (alpha subunit), insertion domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 92.3 bits (229), Expect = 2e-24
Identities = 29/65 (44%), Positives = 41/65 (63%)
Query: 22 EDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQD 81
+ L A++ LW DSG+Q + R E+QL +S KYFLD+LD+LG +Y P++QD
Sbjct: 61 MVETRVFLQYLPAIRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQD 120
Query: 82 ILRTR 86
IL R
Sbjct: 121 ILLAR 125
|
| >d1azta1 a.66.1.1 (A:88-201) Transducin (alpha subunit), insertion domain {Cow (Bos taurus) [TaxId: 9913]} Length = 114 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Transducin (alpha subunit), insertion domain superfamily: Transducin (alpha subunit), insertion domain family: Transducin (alpha subunit), insertion domain domain: Transducin (alpha subunit), insertion domain species: Cow (Bos taurus) [TaxId: 9913]
Score = 91.4 bits (227), Expect = 3e-24
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 10 DAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDR 69
+ V+ + F E K LW D GV+ C+ RSNEYQL D A+YFLD +D
Sbjct: 40 RVDYILSVMNVPDFD--FPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDV 97
Query: 70 LGAKEYQPTEQDILRTR 86
+ +Y P++QD+LR R
Sbjct: 98 IKQDDYVPSDQDLLRCR 114
|
| >d2bcjq1 a.66.1.1 (Q:67-183) Transducin (alpha subunit), insertion domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Transducin (alpha subunit), insertion domain superfamily: Transducin (alpha subunit), insertion domain family: Transducin (alpha subunit), insertion domain domain: Transducin (alpha subunit), insertion domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 91.1 bits (226), Expect = 5e-24
Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 7 DTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDD 66
+ A++V +V +E F + A+K LW D G+QEC+ R EYQL+DS KY+L+D
Sbjct: 40 NKAHAQLVREV--DVEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLND 97
Query: 67 LDRLGAKEYQPTEQDILRTR 86
LDR+ Y PT+QD+LR R
Sbjct: 98 LDRVADPSYLPTQQDVLRVR 117
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Score = 92.9 bits (230), Expect = 1e-23
Identities = 66/116 (56%), Positives = 80/116 (68%), Gaps = 2/116 (1%)
Query: 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDE 146
V T+GI E F +NF +FDVGGQR ER+KWI CF DVTAIIF VA S Y+ V+ ED
Sbjct: 32 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDN 91
Query: 147 TTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK--KSPLTICFPEYAG 200
TNR+QE+L LF SI NN+W S+ILFLNK+DL EK+ KS + FPE+A
Sbjct: 92 QTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFAR 147
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.5 bits (138), Expect = 1e-10
Identities = 29/56 (51%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 206 RNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK--KSPLTICFPEYAGP 259
NR+QE+L LF SI NN+W S+ILFLNK+DL EK+ KS + FPE+A
Sbjct: 93 TNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARY 148
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 79.2 bits (194), Expect = 1e-18
Identities = 65/142 (45%), Positives = 92/142 (64%)
Query: 82 ILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQV 141
I+ + T GI E F KN+ FK+ DVGGQRSERK+W CF+ VT+I+F V+ SE+DQV
Sbjct: 24 IIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQV 83
Query: 142 LHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGK 201
L ED TNR+ ESL +F++I NN+ F++ SIILFLNK DL EEK++ + F E+ G
Sbjct: 84 LMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGD 143
Query: 202 RPGERNRMQESLKLFDSICNNK 223
R+ + ++ F ++
Sbjct: 144 PHCLRDVQKFLVECFRGKRRDQ 165
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.8 bits (110), Expect = 5e-07
Identities = 26/58 (44%), Positives = 39/58 (67%)
Query: 205 ERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGPWYN 262
+ NR+ ESL +F++I NN+ F++ SIILFLNK DL EEK++ + F E+ G +
Sbjct: 89 QTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHC 146
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 74.6 bits (182), Expect = 8e-17
Identities = 72/137 (52%), Positives = 95/137 (69%)
Query: 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDE 146
V TTGI+E F +++ F++ DVGGQRSER+KWIHCFE+VT+I+F VA+SEYDQVL E +
Sbjct: 30 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 89
Query: 147 TTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGER 206
NRM+ES LF +I WF ++S+ILFLNKKDL EEKI S L FPEY G + +
Sbjct: 90 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQ 149
Query: 207 NRMQESLKLFDSICNNK 223
+ LK+F + +
Sbjct: 150 AAREFILKMFVDLNPDS 166
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 68.4 bits (166), Expect = 1e-14
Identities = 98/129 (75%), Positives = 107/129 (82%)
Query: 89 TTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETT 148
TGIVE HF+FK+L+FK+FDVGGQRSERKKWIHCFE VTAIIFCVA+S+YD VL EDE
Sbjct: 29 GTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEM 88
Query: 149 NRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNR 208
NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC+PEYAG E
Sbjct: 89 NRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAA 148
Query: 209 MQESLKLFD 217
+ D
Sbjct: 149 AYIQCQFED 157
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 262 | |||
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.97 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.96 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.94 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.94 | |
| d1tada1 | 121 | Transducin (alpha subunit), insertion domain {Cow | 99.86 | |
| d1azta1 | 114 | Transducin (alpha subunit), insertion domain {Cow | 99.85 | |
| d1cipa1 | 121 | Transducin (alpha subunit), insertion domain {Rat | 99.84 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.82 | |
| d2bcjq1 | 117 | Transducin (alpha subunit), insertion domain {Mous | 99.82 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.8 | |
| d1zcaa1 | 122 | Transducin (alpha subunit), insertion domain {Mous | 99.8 | |
| d1zcba1 | 126 | Transducin (alpha subunit), insertion domain {Mous | 99.79 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.79 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.78 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 99.78 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.78 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.76 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.75 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 99.75 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 99.75 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 99.75 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.75 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 99.74 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.73 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 99.73 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 99.73 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.73 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 99.73 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 99.73 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 99.72 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 99.72 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.72 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 99.72 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.71 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 99.71 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.71 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.7 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.7 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 99.7 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.7 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.7 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.7 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.69 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.67 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.67 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.67 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.65 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.64 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.64 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.64 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.64 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.61 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.61 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.6 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.59 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.58 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.55 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.48 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.44 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.37 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.35 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.2 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.06 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 98.93 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 98.93 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 98.88 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 98.82 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 98.73 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 98.67 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 98.65 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 98.63 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 98.51 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 98.44 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 98.38 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 98.32 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 98.23 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 98.23 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 98.21 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 98.16 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 98.14 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 98.08 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 98.04 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 97.96 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 97.89 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 97.59 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 97.32 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 96.36 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.31 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.1 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.89 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.83 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.0 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 93.47 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 80.23 |
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=1e-31 Score=224.87 Aligned_cols=151 Identities=45% Similarity=0.721 Sum_probs=139.0
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|+.+..+.++++++++||+|||+.+|++|.+||++++++|||+|++++++.+.++...+++.+++.+|..+++++.
T Consensus 32 ~pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~ 111 (221)
T d1azta2 32 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRW 111 (221)
T ss_dssp CCCCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGG
T ss_pred CCCCCeEEEEEEECcEEEEEEecCccceeccchhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeeCCchhhhhhcc--CCCcccCCCCCCCCc-------------ch--hHHHHHHhhh---------cccee
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKK--SPLTICFPEYAGKRP-------------GE--RNRMQESLKL---------FDSIC 220 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~--~~l~~~fp~~~g~~~-------------~~--~~~i~~~f~~---------~~~~~ 220 (262)
+.++|++|+|||+|++.+|+.. .++.++||+|.|... .. .+|++++|.+ +.+|.
T Consensus 112 ~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~ 191 (221)
T d1azta2 112 LRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYP 191 (221)
T ss_dssp GSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEE
T ss_pred hCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceee
Confidence 9999999999999999999875 478999999986421 11 7889888864 67999
Q ss_pred ecccccccceeeeeehh
Q psy6623 221 NNKWFTDTSIILFLNKK 237 (262)
Q Consensus 221 ~~tsA~d~~~I~~~f~~ 237 (262)
|+|||+||+||+.+|++
T Consensus 192 h~T~A~Dt~ni~~vf~~ 208 (221)
T d1azta2 192 HFTCAVDTENIRRVFND 208 (221)
T ss_dssp EECCTTCHHHHHHHHHT
T ss_pred eecceeccHHHHHHHHH
Confidence 99999999999999986
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=2.9e-30 Score=211.06 Aligned_cols=153 Identities=42% Similarity=0.660 Sum_probs=135.2
Q ss_pred eeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 85 ~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
.+.||+|+.+..+..++.++++||++||+.+|..|.++|++++++++++|+++++.++.+....+++.++..+|.+++++
T Consensus 27 ~~~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 106 (200)
T d1zcba2 27 GQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNN 106 (200)
T ss_dssp SCCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred CCCCeeeeEEEEEeeeeeeeeeecccceeeecccccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhC
Confidence 45789999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcch---hHHHHHHhhh-------ccceeecccccccceeeee
Q psy6623 165 KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGE---RNRMQESLKL-------FDSICNNKWFTDTSIILFL 234 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~---~~~i~~~f~~-------~~~~~~~tsA~d~~~I~~~ 234 (262)
+...++|++|++||+|++.+++...++.++||+|.|..... .+|+.++|.. +++|+|+|||+||+||+++
T Consensus 107 ~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~v 186 (200)
T d1zcba2 107 RVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLV 186 (200)
T ss_dssp GGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHH
T ss_pred hhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHH
Confidence 99999999999999999999999999999999999875432 8899998875 6899999999999999999
Q ss_pred ehh
Q psy6623 235 NKK 237 (262)
Q Consensus 235 f~~ 237 (262)
|++
T Consensus 187 f~~ 189 (200)
T d1zcba2 187 FRD 189 (200)
T ss_dssp HHH
T ss_pred HHH
Confidence 975
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=1.3e-27 Score=194.64 Aligned_cols=151 Identities=50% Similarity=0.762 Sum_probs=140.5
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|+....+..+.+.+++||++||+.++..|.+||++++++++|+|+++++..+..+...+++.+++..|..+++.+.
T Consensus 30 ~pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~ 109 (200)
T d2bcjq2 30 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW 109 (200)
T ss_dssp CCCCSCEEEEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGG
T ss_pred CceeeEEEEEEeccceeeeeccccccccccccccccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhh
Confidence 58999999999999999999999999999999999999999999999999999999999889999999999999999998
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcch---hHHHHHHhhh------ccceeecccccccceeeeeehh
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGE---RNRMQESLKL------FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~---~~~i~~~f~~------~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
..++|+++++||+|++..++....+..++|++.+..... .+|+..+|.+ +.+++|+|||+||+||+++|+.
T Consensus 110 ~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~ 189 (200)
T d2bcjq2 110 FQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAA 189 (200)
T ss_dssp GSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHH
T ss_pred ccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHH
Confidence 999999999999999999999999999999998865443 8888888865 7899999999999999999964
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.94 E-value=8.8e-27 Score=188.87 Aligned_cols=151 Identities=68% Similarity=1.059 Sum_probs=139.7
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|+.+..+..+++++++||+|||+.++++|.+||++++++++|+|+++.+.........+.+.++...|..+++++.
T Consensus 27 ~~t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~ 106 (195)
T d1svsa1 27 EAGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW 106 (195)
T ss_dssp SCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGG
T ss_pred CCCccEEEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccc
Confidence 47788888889999999999999999999999999999999999999999999998888888999999999999999988
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcch--hHHHHHHhhh-------ccceeecccccccceeeeeehh
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGE--RNRMQESLKL-------FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~--~~~i~~~f~~-------~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
..++|+++++||+|++.+++...++..+||++.|.+... ..++..+|.+ +++|+|+|||+||+||+++|+.
T Consensus 107 ~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~ 186 (195)
T d1svsa1 107 FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDA 186 (195)
T ss_dssp GTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHH
Confidence 899999999999999999999999999999998877655 7788888866 6899999999999999999964
|
| >d1tada1 a.66.1.1 (A:57-177) Transducin (alpha subunit), insertion domain {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Transducin (alpha subunit), insertion domain superfamily: Transducin (alpha subunit), insertion domain family: Transducin (alpha subunit), insertion domain domain: Transducin (alpha subunit), insertion domain species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.86 E-value=7.4e-23 Score=154.69 Aligned_cols=86 Identities=49% Similarity=0.867 Sum_probs=79.8
Q ss_pred CCCCCHHHHHHHHhhhhccCCCCCCcHHHHHHHHHhcCChHHHHHHhcccccccccchhHHHhhccccCCCCCCcCcccc
Q psy6623 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQDI 82 (262)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d~~v~~~~~~~~~~~l~d~~~yfl~~l~ri~~~~y~pt~~Di 82 (262)
++|+++.++..++........ ..++++++++|..||+|++||+||.++++|+|+||++|||++++||++++|.||.+||
T Consensus 36 ~~~~~~~~~~~i~~~~~~~~~-~~~~~e~~~~i~~LW~D~~iq~~~~r~~ef~L~Dsa~YF~~~l~RI~~~~Y~PT~qDi 114 (121)
T d1tada1 36 GDSARQDDARKLMHMADTIEE-GTMPKEMSDIIQRLWKDSGIQACFDRASEYQLNDSAGYYLSDLERLVTPGYVPTEQDV 114 (121)
T ss_dssp SSTTHHHHHHHHHHHHHHSCT-TCCCHHHHHHHHHHHHCHHHHHHHHTGGGSCCCTTHHHHHTTHHHHTSTTCCCCHHHH
T ss_pred CCchHHHHHHHHHHhhccccC-CCCCHHHHHHHHHHhCCHHHHHHHHhhhccccCcchHHHHHHHHHHcCCCCCCCHHHH
Confidence 478889999999988765444 6899999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecc
Q psy6623 83 LRTRVKT 89 (262)
Q Consensus 83 l~~~~pT 89 (262)
|++|.+|
T Consensus 115 Lr~R~~T 121 (121)
T d1tada1 115 LRSRVKT 121 (121)
T ss_dssp HHCCCCC
T ss_pred hhhcCCC
Confidence 9999987
|
| >d1azta1 a.66.1.1 (A:88-201) Transducin (alpha subunit), insertion domain {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Transducin (alpha subunit), insertion domain superfamily: Transducin (alpha subunit), insertion domain family: Transducin (alpha subunit), insertion domain domain: Transducin (alpha subunit), insertion domain species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.85 E-value=2.2e-22 Score=149.73 Aligned_cols=82 Identities=38% Similarity=0.712 Sum_probs=75.7
Q ss_pred CCCCCHHHHHHHHhhhhccCCCCCCcHHHHHHHHHhcCChHHHHHHhcccccccccchhHHHhhccccCCCCCCcCcccc
Q psy6623 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQDI 82 (262)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d~~v~~~~~~~~~~~l~d~~~yfl~~l~ri~~~~y~pt~~Di 82 (262)
++|+|+.++..++++... ....+++++++.|+.||+|+|||+||.++++|+|+||++|||++++||++++|.||.+||
T Consensus 33 ~~~~n~~~~~~i~~~~~~--~~~~~~~e~~~~i~~LW~D~giq~~~~r~~e~~L~Dsa~Yfl~~i~RI~~~dY~PT~qDi 110 (114)
T d1azta1 33 ANPENQFRVDYILSVMNV--PDFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQDDYVPSDQDL 110 (114)
T ss_dssp SSGGGHHHHHHHHHTTTC--SSCCCCHHHHHHHHHHHHSHHHHHHHHTGGGTTCCTTHHHHHTTHHHHHSTTCCCCHHHH
T ss_pred CCHHHHHHHHHHHhcccc--cCcccCHHHHHHHHHHhCCHHHHHHHHhccccCCCCchHHHHHHHHHHcCCCCCCCHhHh
Confidence 489999999999988653 234789999999999999999999999999999999999999999999999999999999
Q ss_pred ceee
Q psy6623 83 LRTR 86 (262)
Q Consensus 83 l~~~ 86 (262)
|++|
T Consensus 111 Lr~R 114 (114)
T d1azta1 111 LRCR 114 (114)
T ss_dssp HHCC
T ss_pred hccC
Confidence 9975
|
| >d1cipa1 a.66.1.1 (A:61-181) Transducin (alpha subunit), insertion domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Transducin (alpha subunit), insertion domain superfamily: Transducin (alpha subunit), insertion domain family: Transducin (alpha subunit), insertion domain domain: Transducin (alpha subunit), insertion domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.84 E-value=3.7e-22 Score=150.92 Aligned_cols=86 Identities=52% Similarity=0.872 Sum_probs=76.8
Q ss_pred CCCCCHHHHHHHHhhhhccCCCCCCcHHHHHHHHHhcCChHHHHHHhcccccccccchhHHHhhccccCCCCCCcCcccc
Q psy6623 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQDI 82 (262)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d~~v~~~~~~~~~~~l~d~~~yfl~~l~ri~~~~y~pt~~Di 82 (262)
++|.++.++..++...... ....++++++++|..||+|++||+||.++++|+|+||++|||++++||++++|.||.+||
T Consensus 36 ~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~LW~D~~Iq~~~~r~~ef~L~Dsa~YFl~~l~RI~~~dY~PT~qDI 114 (121)
T d1cipa1 36 GDAARADDARQLFVLAGAA-EEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDV 114 (121)
T ss_dssp SSTTHHHHHHHHHHHHHHH-TTTCCCHHHHHHHHHHHHCHHHHHHHTTGGGSCCCTTHHHHHTTHHHHTSTTCCCCHHHH
T ss_pred CChhHHHHHHHHHHhhccc-cCCCCCHHHHHHHHHHhCCHHHHHHHHhhhcccCCCChHHHHHHHHHHcCCCCCCCHHHH
Confidence 4677788887776665443 336899999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecc
Q psy6623 83 LRTRVKT 89 (262)
Q Consensus 83 l~~~~pT 89 (262)
|++|.+|
T Consensus 115 Lr~R~~T 121 (121)
T d1cipa1 115 LRTRVKT 121 (121)
T ss_dssp HTCCCCC
T ss_pred hHhcCCC
Confidence 9999987
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.82 E-value=5.9e-21 Score=151.09 Aligned_cols=130 Identities=18% Similarity=0.321 Sum_probs=104.8
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|+....+..+++++.+||++|++.++..|.+|+.+++++++|+|+++ ..++.++..++..+++...
T Consensus 32 ~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~ 101 (164)
T d1zd9a1 32 IPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAAD----------QEKIEASKNELHNLLDKPQ 101 (164)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCGG
T ss_pred cccceeeeeeeeeeeEEEEEeeccccccccccccccccccchhhccccccc----------ccccchhhhhhhhhhhhhc
Confidence 688999998899999999999999999999999999999999999999998 6889999999999998877
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHH-HHhhhccceeecccccccceeeeeehhhHHHhh
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQ-ESLKLFDSICNNKWFTDTSIILFLNKKDLFEEK 243 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~-~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~ 243 (262)
..++|++|++||+|+.... ....+ .+.+. ..+..+.+.+++|||++|+||.++|+ ||.+.
T Consensus 102 ~~~~pi~lv~nK~Dl~~~~-~~~~i--------------~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~--~l~~~ 162 (164)
T d1zd9a1 102 LQGIPVLVLGNKRDLPGAL-DEKEL--------------IEKMNLSAIQDREICCYSISCKEKDNIDITLQ--WLIQH 162 (164)
T ss_dssp GTTCCEEEEEECTTSTTCC-CHHHH--------------HHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH--HHHHT
T ss_pred ccCCcEEEEEeccccchhh-hHHHH--------------HHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHH--HHHHc
Confidence 8899999999999986421 00000 11110 11222567789999999999999994 55543
|
| >d2bcjq1 a.66.1.1 (Q:67-183) Transducin (alpha subunit), insertion domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Transducin (alpha subunit), insertion domain superfamily: Transducin (alpha subunit), insertion domain family: Transducin (alpha subunit), insertion domain domain: Transducin (alpha subunit), insertion domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.82 E-value=2.8e-21 Score=145.05 Aligned_cols=82 Identities=44% Similarity=0.801 Sum_probs=74.8
Q ss_pred CCCCCHHHHHHHHhhhhccCCCCCCcHHHHHHHHHhcCChHHHHHHhcccccccccchhHHHhhccccCCCCCCcCcccc
Q psy6623 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQDI 82 (262)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d~~v~~~~~~~~~~~l~d~~~yfl~~l~ri~~~~y~pt~~Di 82 (262)
++|+++..+..+++... .....+++++++.|..||+|++||+||.++++|+|+||++|||++++||++++|.||.+||
T Consensus 36 ~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~i~~LW~D~~iq~~~~r~~ef~L~Dsa~YFl~~l~RI~~~dY~PT~qDI 113 (117)
T d2bcjq1 36 KYEHNKAHAQLVREVDV--EKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDV 113 (117)
T ss_dssp SSTTHHHHHHHHHTSCS--TTCCCCCHHHHHHHHHHHHSHHHHHHHHTTTSSCCCTTHHHHHTTHHHHTSTTCCCCHHHH
T ss_pred CChhhHHHHHHHHhccc--ccccccCHHHHHHHHHHHcCHHHHHHHHHhhhhccCcccHHHHHHHHHHcCCCCCCCHHHh
Confidence 36788899999887744 4556899999999999999999999999999999999999999999999999999999999
Q ss_pred ceee
Q psy6623 83 LRTR 86 (262)
Q Consensus 83 l~~~ 86 (262)
|++|
T Consensus 114 Lr~R 117 (117)
T d2bcjq1 114 LRVR 117 (117)
T ss_dssp HHCC
T ss_pred hhcC
Confidence 9975
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.80 E-value=3.7e-20 Score=147.68 Aligned_cols=133 Identities=21% Similarity=0.330 Sum_probs=106.8
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
..||.|+.......+.+.+.+||++|++.++..|..++++++++|||+|+++ ..++..+..+|...+++.
T Consensus 40 ~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~D~s~----------~~~~~~~~~~l~~~~~~~ 109 (173)
T d1e0sa_ 40 TIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCAD----------RDRIDEARQELHRIINDR 109 (173)
T ss_dssp EEEETTEEEEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEEEEETTC----------GGGHHHHHHHHHHHHTSG
T ss_pred ccceeeeeEEEeeccceeeEEecCCCcchhhhHHHhhhcccceEEEEEeccc----------chhHHHHHHHHHHHhhhc
Confidence 3689999988888889999999999999999999999999999999999998 788999999999999888
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
...+.|++|++||+|+....- ...+.. .+-.+....+.+.+++|||++|+||.++| +||.+.+
T Consensus 110 ~~~~~piiiv~NK~Dl~~~~~-~~~i~~-------------~~~~~~~~~~~~~~~e~SA~tg~gv~e~~--~~l~~~~ 172 (173)
T d1e0sa_ 110 EMRDAIILIFANKQDLPDAMK-PHEIQE-------------KLGLTRIRDRNWYVQPSCATSGDGLYEGL--TWLTSNY 172 (173)
T ss_dssp GGTTCEEEEEEECTTSTTCCC-HHHHHH-------------HTTGGGCCSSCEEEEECBTTTTBTHHHHH--HHHHHHC
T ss_pred ccccceeeeeeeccccccccc-HHHHHH-------------HHHHHHHHhCCCEEEEeeCCCCcCHHHHH--HHHHHhc
Confidence 788999999999999864210 000000 00011122367888999999999999999 5666554
|
| >d1zcaa1 a.66.1.1 (A:83-204) Transducin (alpha subunit), insertion domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Transducin (alpha subunit), insertion domain superfamily: Transducin (alpha subunit), insertion domain family: Transducin (alpha subunit), insertion domain domain: Transducin (alpha subunit), insertion domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.80 E-value=7.1e-21 Score=143.91 Aligned_cols=85 Identities=35% Similarity=0.611 Sum_probs=74.7
Q ss_pred CCCCCHHHHHHHHhhhhccC--CCCCCcHHHHHHHHHhcCChHHHHHHhcccccccccchhHHHhhccccCCCCCCcCcc
Q psy6623 3 GTSLDTTDAKMVFDVIQRME--DTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQ 80 (262)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~lw~d~~v~~~~~~~~~~~l~d~~~yfl~~l~ri~~~~y~pt~~ 80 (262)
++|+++.++..++.+..... ....++++++++|..||+|++||+||.++++|+|+||++|||++++||+.++|.||.+
T Consensus 36 ~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~LW~D~~Iq~~~~r~~ef~L~Dsa~YFl~~l~RI~~~dYiPT~q 115 (122)
T d1zcaa1 36 QHSENEKHGMFLMAFENKAGLPVEPATFQLYVPALSALWRDSGIREAFSRRSEFQLGESVKYFLDNLDRIGQLNYFPSKQ 115 (122)
T ss_dssp SSGGGHHHHHHHHTCCCTTCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHTGGGSCCCTHHHHHHHTHHHHSSTTCCCCHH
T ss_pred CChhhHHHHHHHHhcccccCCCCCccchHHHHHHHHHHHCCHHHHHHHHhccccccccchHHHHHHHHHHcCCCCCCCHH
Confidence 47889999999988765432 2235568899999999999999999999999999999999999999999999999999
Q ss_pred ccceeee
Q psy6623 81 DILRTRV 87 (262)
Q Consensus 81 Dil~~~~ 87 (262)
|||++|.
T Consensus 116 DILr~R~ 122 (122)
T d1zcaa1 116 DILLARK 122 (122)
T ss_dssp HHHHCCC
T ss_pred HHHHhcC
Confidence 9999874
|
| >d1zcba1 a.66.1.1 (A:76-201) Transducin (alpha subunit), insertion domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Transducin (alpha subunit), insertion domain superfamily: Transducin (alpha subunit), insertion domain family: Transducin (alpha subunit), insertion domain domain: Transducin (alpha subunit), insertion domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.79 E-value=1.3e-20 Score=143.38 Aligned_cols=85 Identities=36% Similarity=0.646 Sum_probs=74.8
Q ss_pred CCCCCHHHHHHHHhhhhcc------CCCCCCcHHHHHHHHHhcCChHHHHHHhcccccccccchhHHHhhccccCCCCCC
Q psy6623 3 GTSLDTTDAKMVFDVIQRM------EDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQ 76 (262)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~lw~d~~v~~~~~~~~~~~l~d~~~yfl~~l~ri~~~~y~ 76 (262)
++|+|+..+..++.+.... .....++++++..|..||+|++||+||.++++|+|+||++|||++++||+.++|.
T Consensus 36 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~i~~LW~D~~iq~~~~r~~ef~L~Dsa~YFl~~l~RI~~~dYi 115 (126)
T d1zcba1 36 GDNKNQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPAIRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYI 115 (126)
T ss_dssp SSGGGHHHHHHHHTSCSSSHHHHTTCCCHHHHHHHHHHHHHHHHCHHHHHHHHTGGGSCCCTTHHHHHTTHHHHTSTTCC
T ss_pred CCchhHHHHHHHHhcccccccccccccccccCHHHHHHHHHHhCCHHHHHHHHHhhhhcCCcchHHHHHHHHHHcCCCCC
Confidence 4788999999988764321 1234678899999999999999999999999999999999999999999999999
Q ss_pred cCccccceeee
Q psy6623 77 PTEQDILRTRV 87 (262)
Q Consensus 77 pt~~Dil~~~~ 87 (262)
||.+|||++|.
T Consensus 116 PT~qDILr~Rk 126 (126)
T d1zcba1 116 PSQQDILLARR 126 (126)
T ss_dssp CCHHHHHHCCC
T ss_pred CCHHHHHHhcC
Confidence 99999999874
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.79 E-value=9.7e-20 Score=143.80 Aligned_cols=130 Identities=19% Similarity=0.328 Sum_probs=104.7
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|+....+..+++.+.+||++|++.++..|..++++++++++|+|+++ ...+.++..+|...+....
T Consensus 31 ~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~d----------~~~~~~~~~~~~~~~~~~~ 100 (165)
T d1ksha_ 31 SPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD----------RQRMQDCQRELQSLLVEER 100 (165)
T ss_dssp CCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCGG
T ss_pred cceEeeeeeeccccccceeeeecCcchhhhhHHHhhhhhhhcceeeeeccc----------chhHHHHHHhhhhhhhhcc
Confidence 689999999999999999999999999999999999999999999999998 7889999999999888777
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHH-HHhhhccceeecccccccceeeeeehhhHHHhh
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQ-ESLKLFDSICNNKWFTDTSIILFLNKKDLFEEK 243 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~-~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~ 243 (262)
..++|++|++||+|+...+-.. .. ...+. .....+.+.+++|||++|+||.++|+ ||.+.
T Consensus 101 ~~~~p~iiv~nK~Dl~~~~~~~-~~--------------~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~--~l~~~ 161 (165)
T d1ksha_ 101 LAGATLLIFANKQDLPGALSCN-AI--------------QEALELDSIRSHHWRIQGCSAVTGEDLLPGID--WLLDD 161 (165)
T ss_dssp GTTCEEEEEEECTTSTTCCCHH-HH--------------HHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH--HHHHH
T ss_pred cCCCceEEEEeccccccccCHH-HH--------------HHHHHhhhhhcCCCEEEEEECCCCCCHHHHHH--HHHHH
Confidence 7889999999999986421100 00 11110 11222567789999999999999995 55443
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.78 E-value=7.4e-20 Score=145.91 Aligned_cols=130 Identities=15% Similarity=0.255 Sum_probs=104.5
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||.|+....+..+++.+.+||++|++.++..|..++++++++|+|+|+++ ..++.++..++..+.....
T Consensus 45 ~~~~~~~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~d----------~~s~~~~~~~~~~~~~~~~ 114 (176)
T d1fzqa_ 45 TPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSAD----------RKRFEETGQELTELLEEEK 114 (176)
T ss_dssp EEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTC----------GGGHHHHHHHHHHHTTCGG
T ss_pred eeeeeeeEEEeccCCeeEeEeeccccccchhHHHHHhhccceeEEeecccc----------ccchhhhhhhhhhhhhhhc
Confidence 588899988889899999999999999999999999999999999999998 7899999999999887777
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHH-HHhhhccceeecccccccceeeeeehhhHHHhh
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQ-ESLKLFDSICNNKWFTDTSIILFLNKKDLFEEK 243 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~-~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~ 243 (262)
..++|++|++||+|+..+.- ...+ .+.+. .....+.+.+++|||++|+||+++| +||.+.
T Consensus 115 ~~~~pillv~nK~Dl~~~~~-~~~~--------------~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~--~~l~~~ 175 (176)
T d1fzqa_ 115 LSCVPVLIFANKQDLLTAAP-ASEI--------------AEGLNLHTIRDRVWQIQSCSALTGEGVQDGM--NWVCKN 175 (176)
T ss_dssp GTTCCEEEEEECTTSTTCCC-HHHH--------------HHHTTGGGCCSSCEEEEECCTTTCTTHHHHH--HHHHHT
T ss_pred cCCCeEEEEEEecccccccc-HHHH--------------HHHHHHHHHHhcCCEEEEEeCCCCCCHHHHH--HHHHhc
Confidence 77899999999999965210 0000 00000 1112256778899999999999999 466654
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=9.2e-20 Score=145.19 Aligned_cols=132 Identities=14% Similarity=0.090 Sum_probs=96.4
Q ss_pred ccccCCCCCCcCccccceeeecccceeEEEEee----eccceeeeecCCccccchhhhccccCCCEEEEeeecccccccc
Q psy6623 67 LDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSF----KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVL 142 (262)
Q Consensus 67 l~ri~~~~y~pt~~Dil~~~~pT~Gi~~~~~~~----~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~ 142 (262)
+.|+....|.+. +.||+|+......+ ..+++.+||++|++.++.+|..|+++++++|+|+|+++
T Consensus 20 i~~~~~~~f~~~-------~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~----- 87 (170)
T d1i2ma_ 20 VKRHLTGEFEKK-------YVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTS----- 87 (170)
T ss_dssp HHTTC-----CC-------EEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEEEETTS-----
T ss_pred HHHHHhCCCCcc-------cccceeccccccccccccccccccccccccccccceecchhcccccchhhcccccc-----
Confidence 345665555543 47899876655444 34789999999999999999999999999999999999
Q ss_pred ccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeec
Q psy6623 143 HEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNN 222 (262)
Q Consensus 143 ~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~ 222 (262)
..+++....|+..+.... .++|++|+|||+|+..++..... ..+ .....+.+++
T Consensus 88 -----~~Sf~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~---------------~~~----~~~~~~~~~e 141 (170)
T d1i2ma_ 88 -----RVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKS---------------IVF----HRKKNLQYYD 141 (170)
T ss_dssp -----GGGGTTHHHHHHHHHHHH--CSCCEEEEEECCCCSCSCCTTTS---------------HHH----HSSCSSEEEE
T ss_pred -----ccccchhHHHHHHHhhcc--CCCceeeecchhhhhhhhhhhHH---------------HHH----HHHcCCEEEE
Confidence 667777777777766432 47999999999998654321110 111 1224567889
Q ss_pred ccccccceeeeeeh
Q psy6623 223 KWFTDTSIILFLNK 236 (262)
Q Consensus 223 tsA~d~~~I~~~f~ 236 (262)
|||++|.||.++|.
T Consensus 142 ~Sak~~~~v~e~f~ 155 (170)
T d1i2ma_ 142 ISAKSNYNFEKPFL 155 (170)
T ss_dssp EBTTTTBTTTHHHH
T ss_pred EeCCCCCCHHHHHH
Confidence 99999999999996
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.78 E-value=1.5e-19 Score=145.19 Aligned_cols=133 Identities=23% Similarity=0.280 Sum_probs=101.7
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
..||.|........+++++.+||++|++.++..|..|+++++++|+|+|+++ ..++.++..++..++...
T Consensus 45 ~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~d----------~~s~~~~~~~l~~~~~~~ 114 (182)
T d1moza_ 45 TKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTD----------KDRMSTASKELHLMLQEE 114 (182)
T ss_dssp ECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTC----------TTTHHHHHHHHHHHTTSS
T ss_pred cccccceEEEEEeeCCEEEEEEecccccccchhHHhhhccceeEEEEeeecc----------cccchhHHHHHHHHHHhh
Confidence 4689999988889999999999999999999999999999999999999998 788999999999998887
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
...+.|++|++||+|+... ....++...+ -......+.+.+++|||++|+||.++|+ ||.+.+
T Consensus 115 ~~~~~piliv~NK~Dl~~~-~~~~~i~~~~-------------~~~~~~~~~~~~~e~SA~~g~gv~e~~~--~l~~~i 177 (182)
T d1moza_ 115 ELQDAALLVFANKQDQPGA-LSASEVSKEL-------------NLVELKDRSWSIVASSAIKGEGITEGLD--WLIDVI 177 (182)
T ss_dssp TTSSCEEEEEEECTTSTTC-CCHHHHHHHT-------------TTTTCCSSCEEEEEEBGGGTBTHHHHHH--HHHHHH
T ss_pred ccCCcceEEEEEeeccccc-cCHHHHHHHH-------------HHHHHhhCCCEEEEEECCCCCCHHHHHH--HHHHHH
Confidence 7888999999999998641 1111111100 0001122567789999999999999995 555544
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.76 E-value=7.9e-19 Score=139.37 Aligned_cols=123 Identities=15% Similarity=0.158 Sum_probs=89.8
Q ss_pred ecccceeEEEEee----eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEVHFSF----KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~~~~~----~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||.|.......+ ..+++++||++||+.++.+|..|+++++++|+|+|+++ .+++.....++..+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv~d~~~----------~~s~~~~~~~~~~~~ 104 (169)
T d3raba_ 35 VSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN----------EESFNAVQDWSTQIK 104 (169)
T ss_dssp CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred ccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECcc----------chhhhhhhhhhhhhh
Confidence 5556644333222 34789999999999999999999999999999999998 667777777776654
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
. ....+.|++|++||+|+..++... .+-+....+...+.+++|||++|.||.++|+.
T Consensus 105 ~-~~~~~~~iivv~nK~D~~~~~~v~-----------------~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~ 161 (169)
T d3raba_ 105 T-YSWDNAQVLLVGNKCDMEDERVVS-----------------SERGRQLADHLGFEFFEASAKDNINVKQTFER 161 (169)
T ss_dssp H-HCCSCCEEEEEEECTTCGGGCCSC-----------------HHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred c-ccCCcceEEEEEeecccccccccc-----------------hhhhHHHHHHcCCEEEEecCCCCcCHHHHHHH
Confidence 3 234678999999999987643111 11111111224567899999999999999963
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=1.2e-18 Score=138.53 Aligned_cols=110 Identities=14% Similarity=0.100 Sum_probs=84.9
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
+.+++.+||++||+.++..|..|+++++++|+|+|+++ ..++....+++..+.+. ....+|++|++||+
T Consensus 52 ~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~~~ilvgnK~ 120 (171)
T d2ew1a1 52 EKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITC----------EESFRCLPEWLREIEQY-ASNKVITVLVGNKI 120 (171)
T ss_dssp EEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-SCTTCEEEEEEECG
T ss_pred EEEEEEEEECCCchhhHHHHHHHHhccceEEEeeeccc----------chhhhhhhhhhhhhccc-ccccccEEEEEeec
Confidence 34789999999999999999999999999999999998 67788888888777653 33578999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+..++....... ..+.. ...+.+++|||++|+||+++|..
T Consensus 121 D~~~~~~v~~~~~-------------~~~~~----~~~~~~~~~SAktg~gV~e~f~~ 161 (171)
T d2ew1a1 121 DLAERREVSQQRA-------------EEFSE----AQDMYYLETSAKESDNVEKLFLD 161 (171)
T ss_dssp GGGGGCSSCHHHH-------------HHHHH----HHTCCEEECCTTTCTTHHHHHHH
T ss_pred ccccccchhhhHH-------------HHHHH----hCCCEEEEEccCCCCCHHHHHHH
Confidence 9875321110000 12222 24567889999999999999963
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=6.2e-19 Score=140.97 Aligned_cols=123 Identities=15% Similarity=0.182 Sum_probs=86.7
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
+.+++++||++|++.++..|..||++++++|+|+|+++ ..++++...++...+... ..++|++|++||+
T Consensus 48 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~Sf~~~~~~~~~~~~~~-~~~~piilvgnK~ 116 (177)
T d1kmqa_ 48 KQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDS----------PDSLENIPEKWTPEVKHF-CPNVPIILVGNKK 116 (177)
T ss_dssp EEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH-STTSCEEEEEECG
T ss_pred cceeeeccccCccchhcccchhhcccchhhhhhcccch----------hHHHHHHHHHHHHHHHHh-CCCCceEEeeecc
Confidence 45789999999999999999999999999999999998 788888888887777643 3579999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+...+.........- .......+..-+.+.+ ..+.+++|||++|.||+++|+.
T Consensus 117 Dl~~~~~~~~~~~~~~--~~~v~~~e~~~~a~~~--~~~~~~E~SAkt~~gi~e~F~~ 170 (177)
T d1kmqa_ 117 DLRNDEHTRRELAKMK--QEPVKPEEGRDMANRI--GAFGYMECSAKTKDGVREVFEM 170 (177)
T ss_dssp GGTTCHHHHHHHHHTT--CCCCCHHHHHHHHHHT--TCSEEEECCTTTCTTHHHHHHH
T ss_pred cccchhhHHHHHHHhh--cccccHHHHHHHHHHc--CCcEEEEecCCCCcCHHHHHHH
Confidence 9975432211110000 0000000111111111 2356789999999999999964
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=7.2e-19 Score=139.27 Aligned_cols=117 Identities=12% Similarity=0.097 Sum_probs=90.8
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
..+.+.+||++|++.++..|..|+++++++|+|+|+++ ..++++...|+..+.......++|++|+|||+
T Consensus 49 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~ 118 (167)
T d1c1ya_ 49 QQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITA----------QSTFNDLQDLREQILRVKDTEDVPMILVGNKC 118 (167)
T ss_dssp CEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHHCCSCCCEEEEEECT
T ss_pred eEEEeccccccCcccccccccccccccceeEEeeeccc----------hhhhHhHHHHHHHHHHhcCCCCCeEEEEEEec
Confidence 45779999999999999999999999999999999998 78888888899888765555689999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
|+..++.... .+...+.+++ ..+.+++|||++|+||.++|. +|.+++
T Consensus 119 Dl~~~~~~~~--------------~~~~~~~~~~--~~~~~~e~Sak~g~gv~e~F~--~l~~~i 165 (167)
T d1c1ya_ 119 DLEDERVVGK--------------EQGQNLARQW--CNCAFLESSAKSKINVNEIFY--DLVRQI 165 (167)
T ss_dssp TCGGGCCSCH--------------HHHHHHHHHT--TSCEEEECBTTTTBSHHHHHH--HHHHHH
T ss_pred Ccccccccch--------------hHHHHHHHHh--CCCEEEEEcCCCCcCHHHHHH--HHHHHh
Confidence 9976431111 0111222222 346788999999999999995 454444
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=1.1e-18 Score=138.51 Aligned_cols=110 Identities=18% Similarity=0.174 Sum_probs=79.9
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
..+.+.+||++||+.++.+|.+|+++++++|+|+|+++ ..++.+...|+..+.......++|++|+|||+
T Consensus 46 ~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~t~----------~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~ 115 (168)
T d2gjsa1 46 EEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTD----------KGSFEKASELRVQLRRARQTDDVPIILVGNKS 115 (168)
T ss_dssp EEEEEEEEECC-------CHHHHHTSCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHCC--CCCEEEEEECT
T ss_pred cccceeeeecccccccceecccchhhhhhhceeccccc----------cccccccccccchhhcccccccceEEEeeccc
Confidence 34788999999999999999999999999999999998 78889888888888765555678999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcch-hHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGE-RNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~-~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+..++.... .+ ..+. ....+.+++|||++|.||.++|..
T Consensus 116 Dl~~~~~v~~--------------~~~~~~~----~~~~~~~~e~Sak~~~~v~~~f~~ 156 (168)
T d2gjsa1 116 DLVRSREVSV--------------DEGRACA----VVFDCKFIETSAALHHNVQALFEG 156 (168)
T ss_dssp TCGGGCCSCH--------------HHHHHHH----HHHTSEEEECBTTTTBSHHHHHHH
T ss_pred chhhhcchhH--------------HHHHHHH----HhcCCEEEEEeCCCCcCHHHHHHH
Confidence 9976431110 00 1222 224567889999999999999974
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=2.5e-18 Score=136.54 Aligned_cols=129 Identities=12% Similarity=0.090 Sum_probs=95.1
Q ss_pred ecccceeEEEEee----eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEVHFSF----KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~~~~~----~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||.|........ ..+.+.+||++|++.++..|..|+++++++|+|+|+++ ..++.....++..+.
T Consensus 36 ~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~~~ 105 (170)
T d1r2qa_ 36 ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN----------EESFARAKNWVKELQ 105 (170)
T ss_dssp CCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHH
T ss_pred ccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEEeccch----------hhHHHHHHHHhhhhh
Confidence 4555544333222 34789999999999999999999999999999999998 677888888887776
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 242 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~ 242 (262)
+. ...++|++|++||+|+..++... .+.+........+.+++|||++|.||+++|. .|.+
T Consensus 106 ~~-~~~~~~iilvgnK~Dl~~~~~v~-----------------~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~--~l~~ 165 (170)
T d1r2qa_ 106 RQ-ASPNIVIALSGNKADLANKRAVD-----------------FQEAQSYADDNSLLFMETSAKTSMNVNEIFM--AIAK 165 (170)
T ss_dssp HH-SCTTCEEEEEEECGGGGGGCCSC-----------------HHHHHHHHHHTTCEEEECCTTTCTTHHHHHH--HHHH
T ss_pred hc-cCCCceEEeeccccccccccccc-----------------HHHHHHHHHhcCCEEEEeeCCCCCCHHHHHH--HHHH
Confidence 53 34579999999999997643211 1222222223557789999999999999995 3444
Q ss_pred hcc
Q psy6623 243 KIK 245 (262)
Q Consensus 243 ~i~ 245 (262)
.+.
T Consensus 166 ~i~ 168 (170)
T d1r2qa_ 166 KLP 168 (170)
T ss_dssp TSC
T ss_pred HHh
Confidence 544
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=99.74 E-value=9.6e-19 Score=138.92 Aligned_cols=110 Identities=11% Similarity=0.109 Sum_probs=84.7
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
..+.+.+||++|++.++.++..++++++++|+|+|+++ ..++.....|+..+.......++|++|+|||+
T Consensus 50 ~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~ 119 (168)
T d1u8za_ 50 EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITE----------MESFAATADFREQILRVKEDENVPFLLVGNKS 119 (168)
T ss_dssp EEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHCCTTSCEEEEEECG
T ss_pred ccccccccccccccchhhhhhhcccccceeEEEeeccc----------hhhhhhHHHHHHHHHHhhCCCCCcEEEEeccc
Confidence 34788999999999999999999999999999999998 78888888888888765555689999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
|+..++... .+-+.+......+.+++|||++|.||+++|.
T Consensus 120 Dl~~~~~v~-----------------~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~ 159 (168)
T d1u8za_ 120 DLEDKRQVS-----------------VEEAKNRADQWNVNYVETSAKTRANVDKVFF 159 (168)
T ss_dssp GGGGGCCSC-----------------HHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred ccccccccc-----------------HHHHHHHHHHcCCeEEEEcCCCCcCHHHHHH
Confidence 996542111 1112222222456789999999999999996
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=2.6e-18 Score=136.35 Aligned_cols=110 Identities=12% Similarity=0.096 Sum_probs=83.4
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC-CCCCCCeEEEEeeCC
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN-KWFTDTSIILFLNKK 179 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~-~~~~~~piil~~NK~ 179 (262)
.+.+.+||++|++.++..+..|+++++++|+|+|+++ .+++.....|+..+... ....++|++|||||+
T Consensus 49 ~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~ 118 (171)
T d2erxa1 49 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITS----------RQSLEELKPIYEQICEIKGDVESIPIMLVGNKC 118 (171)
T ss_dssp EEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTC----------HHHHHTTHHHHHHHHHHHC---CCCEEEEEECG
T ss_pred cceeccccccccccccccccccccceeEEEEEeeccc----------ccchhcccchhhhhhhhhccCCCCcEEEEeecc
Confidence 4678999999999999999999999999999999998 67777777777776643 234678999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+..++... .+-+.+......+.+++|||++|.||+++|..
T Consensus 119 Dl~~~~~v~-----------------~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~ 159 (171)
T d2erxa1 119 DESPSREVQ-----------------SSEAEALARTWKCAFMETSAKLNHNVKELFQE 159 (171)
T ss_dssp GGGGGCCSC-----------------HHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred ccccccccc-----------------HHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence 986543111 11111111224577899999999999999963
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.73 E-value=2.1e-18 Score=136.18 Aligned_cols=121 Identities=13% Similarity=0.146 Sum_probs=89.6
Q ss_pred ecccceeEEEEee----eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEVHFSF----KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~~~~~----~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|........ ..+.+.+||++|++.+...+..++++++++++|+|+++ ..+++....|+..+.
T Consensus 32 ~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~ 101 (164)
T d1z2aa1 32 KKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTD----------RESFEAISSWREKVV 101 (164)
T ss_dssp SCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred ccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEEEeccc----------hhhhhhccccccccc
Confidence 4666654433333 24788999999999999999999999999999999998 677777777777766
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
.. ..++|++|||||+|+..++....... ..+.. ...+.+++|||++|.||+++|+
T Consensus 102 ~~--~~~~~iilVgnK~Dl~~~~~v~~~~~-------------~~~~~----~~~~~~~e~Sak~g~~v~e~f~ 156 (164)
T d1z2aa1 102 AE--VGDIPTALVQNKIDLLDDSCIKNEEA-------------EGLAK----RLKLRFYRTSVKEDLNVSEVFK 156 (164)
T ss_dssp HH--HCSCCEEEEEECGGGGGGCSSCHHHH-------------HHHHH----HHTCEEEECBTTTTBSSHHHHH
T ss_pred cc--CCCceEEEeeccCCcccceeeeehhh-------------HHHHH----HcCCEEEEeccCCCcCHHHHHH
Confidence 43 24799999999999976431110000 12222 2456789999999999999996
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=2.2e-18 Score=137.33 Aligned_cols=110 Identities=15% Similarity=0.077 Sum_probs=87.4
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+.+||++|++.++..|..|+++++++|+|+|+++ ..++.....|+..+.......++|++|+|||+|
T Consensus 53 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~D 122 (173)
T d2fn4a1 53 PARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAIND----------RQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 122 (173)
T ss_dssp EEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGG
T ss_pred eeeeeccccccccccccccchhhccceeeeeeccccc----------ccccchhhhhhHHHHHHhccCCCceEEEEEeec
Confidence 4678999999999999999999999999999999998 788888888888887654456899999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+..++... .+..........+.+++|||++|.||+++|..
T Consensus 123 l~~~~~~~-----------------~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~ 162 (173)
T d2fn4a1 123 LESQRQVP-----------------RSEASAFGASHHVAYFEASAKLRLNVDEAFEQ 162 (173)
T ss_dssp GGGGCCSC-----------------HHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred hhhccccc-----------------hhhhhHHHHhcCCEEEEEeCCCCcCHHHHHHH
Confidence 97643111 11122222224577889999999999999964
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=3.2e-18 Score=135.50 Aligned_cols=108 Identities=13% Similarity=0.096 Sum_probs=77.3
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+.+||++|++.++.+|..|+++++++|+|+|+++ ..+++....+++.+... .....|++|++||+|
T Consensus 51 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~Sf~~~~~~~~~~~~~-~~~~~~~ilvgnK~D 119 (167)
T d1z08a1 51 RVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITD----------EDSFQKVKNWVKELRKM-LGNEICLCIVGNKID 119 (167)
T ss_dssp EEEEEEEECCCC-------CCSSTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGG
T ss_pred cceeeeeccCCcceecccchhhccCCceeEEEEeCCc----------hhHHHhhhhhhhhcccc-cccccceeeeccccc
Confidence 4788999999999999999999999999999999998 77888888887766543 235689999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+..++... .+-+........+.+++|||++|.||+++|.
T Consensus 120 l~~~~~v~-----------------~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~ 158 (167)
T d1z08a1 120 LEKERHVS-----------------IQEAESYAESVGAKHYHTSAKQNKGIEELFL 158 (167)
T ss_dssp GGGGCCSC-----------------HHHHHHHHHHTTCEEEEEBTTTTBSHHHHHH
T ss_pred cccccccc-----------------hHHHHHHHHHcCCeEEEEecCCCcCHHHHHH
Confidence 97653211 1111111222456778999999999999996
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.73 E-value=1.8e-18 Score=137.41 Aligned_cols=111 Identities=13% Similarity=0.087 Sum_probs=87.6
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
..+.+++||++|++.++..+..|+++++++|+|+|+++ ..++.....|+..+.+.....+.|++|++||+
T Consensus 50 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv~d~~d----------~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~ 119 (169)
T d1x1ra1 50 QWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTD----------KASFEHVDRFHQLILRVKDRESFPMILVANKV 119 (169)
T ss_dssp EEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHHTSSCCCEEEEEECT
T ss_pred ccccccccccccccccccchhhhhhhccEEEEeccccc----------chhhhccchhhHHHHhhccccCccEEEEeccc
Confidence 45789999999999999999999999999999999999 78888888888888765445679999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccc-eeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTS-IILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~-~I~~~f~~ 237 (262)
|+..++... .+-+.+......+.+++|||++|. ||+++|..
T Consensus 120 Dl~~~~~v~-----------------~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~ 161 (169)
T d1x1ra1 120 DLMHLRKVT-----------------RDQGKEMATKYNIPYIETSAKDPPLNVDKTFHD 161 (169)
T ss_dssp TCSTTCCSC-----------------HHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHH
T ss_pred chhhhceee-----------------hhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHH
Confidence 987643111 111222222355778899999986 99999974
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=2.4e-18 Score=138.65 Aligned_cols=121 Identities=11% Similarity=0.058 Sum_probs=85.6
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+++.+||++||+.++..|..|+++++++|+|+|+++ ..++++...++...++.. ..++|++|++||+|
T Consensus 56 ~~~l~i~D~~g~e~~~~~~~~~~~~a~~~ilv~d~t~----------~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~D 124 (185)
T d2atxa1 56 QYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVN----------PASFQNVKEEWVPELKEY-APNVPFLLIGTQID 124 (185)
T ss_dssp EEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH-STTCCEEEEEECTT
T ss_pred eEEeecccccccchhhhhhhhcccccceeeeccccch----------HHHHHHHHHHHHHHHHhc-CCCCCeeEeeeccc
Confidence 4678999999999999999999999999999999998 788888888888777643 46899999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+............. +......+-..+.... ..+.+++|||++|.||+++|..
T Consensus 125 l~~~~~~~~~~~~~-----~~r~v~~~~~~~~a~~~~~~~~~E~SAk~~~gv~e~F~~ 177 (185)
T d2atxa1 125 LRDDPKTLARLNDM-----KEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDE 177 (185)
T ss_dssp STTCHHHHHHHTTT-----TCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHH
T ss_pred cccchhhhhhhhhc-----ccccccHHHHHHHHHHcCCCEEEEecCCCCcCHHHHHHH
Confidence 86532111000000 0000001111111111 2356788999999999999974
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=4.8e-18 Score=133.85 Aligned_cols=128 Identities=18% Similarity=0.226 Sum_probs=94.1
Q ss_pred ecccceeEEEEee----eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEVHFSF----KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~~~~~----~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|........ ..+.+.+||++||+.++..|..++++++++|+|+|+++ ..++.....++..+.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~i~~~~~~~~ 99 (164)
T d1yzqa1 30 QATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITN----------VNSFQQTTKWIDDVR 99 (164)
T ss_dssp CCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred ccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEeecccc----------ccchhhhHhhHHHHH
Confidence 4555544333222 34788999999999999999999999999999999998 677888888888776
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 242 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~ 242 (262)
+.. ..++|++|++||+|+...+... .+..........+.+++|||++|.||+++|.. +.+
T Consensus 100 ~~~-~~~~~iilvgnK~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~--i~~ 159 (164)
T d1yzqa1 100 TER-GSDVIIMLVGNKTDLADKRQVS-----------------IEEGERKAKELNVMFIETSAKAGYNVKQLFRR--VAA 159 (164)
T ss_dssp HHH-TTSSEEEEEEECTTCGGGCCSC-----------------HHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH--HHH
T ss_pred Hhc-CCCceEEEEecccchhhhhhhh-----------------HHHHHHHHHHcCCEEEEecCCCCcCHHHHHHH--HHH
Confidence 542 3579999999999986532111 12222223335577899999999999999953 444
Q ss_pred hc
Q psy6623 243 KI 244 (262)
Q Consensus 243 ~i 244 (262)
++
T Consensus 160 ~l 161 (164)
T d1yzqa1 160 AL 161 (164)
T ss_dssp HS
T ss_pred hh
Confidence 43
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=7.9e-18 Score=133.08 Aligned_cols=110 Identities=13% Similarity=0.112 Sum_probs=87.0
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+.+||++|++.++.++..++++++++|+|+|+++ ..++.....|+..+.+.....++|++|+|||+|
T Consensus 51 ~~~l~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~D 120 (167)
T d1xtqa1 51 EYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTS----------IKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD 120 (167)
T ss_dssp EEEEEEEECCCCCTTCCCCGGGTSSCCEEEEEEETTC----------HHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTT
T ss_pred EEEeeecccccccccccccchhhhhhhhhhhhcccch----------hhhhhhhhhhhhhhhhcccccccceeeeccccc
Confidence 4778999999999999999999999999999999999 788888888888887655556799999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+..++....+.. ..+.. ...+.+++|||++|.||+++|..
T Consensus 121 l~~~r~v~~~~~-------------~~~a~----~~~~~~~e~Sak~~~~v~~~f~~ 160 (167)
T d1xtqa1 121 LHMERVISYEEG-------------KALAE----SWNAAFLESSAKENQTAVDVFRR 160 (167)
T ss_dssp CGGGCCSCHHHH-------------HHHHH----HHTCEEEECCTTCHHHHHHHHHH
T ss_pred cccccchhHHHH-------------HHHHH----HcCCEEEEEecCCCCCHHHHHHH
Confidence 876432111000 12222 23466789999999999999974
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=2.2e-18 Score=138.69 Aligned_cols=110 Identities=14% Similarity=0.192 Sum_probs=87.0
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+++++||++||+.++.+|..|+++++++|+|+|+++ ..+++....|+..+..+.....+|++|++||+|
T Consensus 63 ~~~~~i~dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~D 132 (186)
T d2f7sa1 63 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTS----------QQSFLNVRNWMSQLQANAYCENPDIVLIGNKAD 132 (186)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTC----------HHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTT
T ss_pred eEEeccccCCcchhhHHHHHHHHhcCCEEEEEEeccc----------cccceeeeeccchhhhhccCCCceEEEEeeecc
Confidence 3679999999999999999999999999999999998 678888888887777666667889999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+..++... .+-+.+......+.+++|||++|+||+++|+.
T Consensus 133 l~~~~~v~-----------------~~e~~~~~~~~~~~~~e~Sak~~~~i~e~f~~ 172 (186)
T d2f7sa1 133 LPDQREVN-----------------ERQARELADKYGIPYFETSAATGQNVEKAVET 172 (186)
T ss_dssp CGGGCCSC-----------------HHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHH
T ss_pred chhhhcch-----------------HHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 97643111 11111111224567899999999999999974
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=4.4e-18 Score=134.53 Aligned_cols=111 Identities=14% Similarity=0.115 Sum_probs=88.2
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
..+.+.+||++|++.++..+..|+++++++|+|+|+++ ..++.+...|+..+.......++|++|||||+
T Consensus 49 ~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~ 118 (167)
T d1kaoa_ 49 SPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVN----------QQSFQDIKPMRDQIIRVKRYEKVPVILVGNKV 118 (167)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHTTTSCCCEEEEEECG
T ss_pred ceEeeccccCCCccccccchHHHhhcccceeeeeeecc----------hhhhhhhhchhhhhhhhccCCCCCEEEEEEcc
Confidence 34778999999999999999999999999999999999 78899999998888765555789999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+...+... .+..........+.+++|||++|.||+++|..
T Consensus 119 Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~ 159 (167)
T d1kaoa_ 119 DLESEREVS-----------------SSEGRALAEEWGCPFMETSAKSKTMVDELFAE 159 (167)
T ss_dssp GGGGGCCSC-----------------HHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred chhhcccch-----------------HHHHHHHHHHcCCeEEEECCCCCcCHHHHHHH
Confidence 997643111 11111111224466889999999999999963
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.71 E-value=8.1e-18 Score=136.53 Aligned_cols=110 Identities=14% Similarity=0.093 Sum_probs=85.6
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
..+.+.+|||+|++.++.+|..|+++++++|+|+|+++ ..++.....++..+.. ....++|++|++||+
T Consensus 53 ~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v~d~t~----------~~s~~~~~~~~~~~~~-~~~~~~~iilv~nK~ 121 (194)
T d2bcgy1 53 KTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTD----------QESFNGVKMWLQEIDR-YATSTVLKLLVGNKC 121 (194)
T ss_dssp EEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHH-HSCTTCEEEEEEECT
T ss_pred EEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCcc----------hhhhhhHhhhhhhhhh-cccCCceEEEEEecc
Confidence 45789999999999999999999999999999999998 6777877777776654 345689999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+...+... .+-.........+.++++||++|.||.++|..
T Consensus 122 D~~~~~~~~-----------------~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~~ 162 (194)
T d2bcgy1 122 DLKDKRVVE-----------------YDVAKEFADANKMPFLETSALDSTNVEDAFLT 162 (194)
T ss_dssp TCTTTCCSC-----------------HHHHHHHHHHTTCCEEECCTTTCTTHHHHHHH
T ss_pred ccccccchh-----------------HHHHhhhhhccCcceEEEecCcCccHHHHHHH
Confidence 986532111 11112222234567889999999999999974
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.71 E-value=1.8e-17 Score=131.07 Aligned_cols=114 Identities=12% Similarity=0.053 Sum_probs=85.3
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
...+.+||++|++.++.+|..|+++++++|+|+|+++ ..++.....++..+.. ....+.|++||+||+|
T Consensus 52 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~-~~~~~~~iilvgnK~D 120 (167)
T d1z0ja1 52 LHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITK----------EETFSTLKNWVRELRQ-HGPPSIVVAIAGNKCD 120 (167)
T ss_dssp EEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHH-HSCTTSEEEEEEECTT
T ss_pred ccceeeeecCCchhhhHHHHHHHhhccceEEEeeech----------hhhhhhHHHhhhhhhh-ccCCcceEEEecccch
Confidence 3567899999999999999999999999999999998 6777777666665544 3346799999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
+..++....+.. .++.. ...+.+++|||++|.||+++|. .|.++|
T Consensus 121 l~~~~~v~~~~~-------------~~~~~----~~~~~~~e~SAk~~~nV~e~f~--~l~~~i 165 (167)
T d1z0ja1 121 LTDVREVMERDA-------------KDYAD----SIHAIFVETSAKNAININELFI--EISRRI 165 (167)
T ss_dssp CGGGCCSCHHHH-------------HHHHH----HTTCEEEECBTTTTBSHHHHHH--HHHHHC
T ss_pred hccccchhHHHH-------------HHHHH----HcCCEEEEEecCCCCCHHHHHH--HHHHhC
Confidence 975432111000 22222 2457789999999999999995 355544
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=7e-18 Score=133.83 Aligned_cols=128 Identities=15% Similarity=0.174 Sum_probs=85.3
Q ss_pred ecccceeEEEEee----eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEVHFSF----KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~~~~~----~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.+|+|.......+ ..+++++|||+||+.++.+|..++++++++|+|+|+++ ..++.....++..+.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~ 106 (170)
T d2g6ba1 37 ISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTN----------KASFDNIQAWLTEIH 106 (170)
T ss_dssp CCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred cceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeEEEecCCc----------ccchhhhhhhhhhhh
Confidence 3455554444333 24788999999999999999999999999999999998 677888888887766
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 242 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~ 242 (262)
... ....|++|++||+|+..++... .+-+........+.+++|||++|.||+++|. +|.+
T Consensus 107 ~~~-~~~~~iilv~~k~d~~~~~~v~-----------------~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~--~l~~ 166 (170)
T d2g6ba1 107 EYA-QHDVALMLLGNKVDSAHERVVK-----------------REDGEKLAKEYGLPFMETSAKTGLNVDLAFT--AIAK 166 (170)
T ss_dssp HHS-CTTCEEEEEEECCSTTSCCCSC-----------------HHHHHHHHHHHTCCEEECCTTTCTTHHHHHH--HHHH
T ss_pred hcc-CCCceEEEEEeeechhhccccc-----------------HHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH--HHHH
Confidence 543 3568999999999986532111 1111222222457789999999999999995 3444
Q ss_pred hc
Q psy6623 243 KI 244 (262)
Q Consensus 243 ~i 244 (262)
++
T Consensus 167 ~i 168 (170)
T d2g6ba1 167 EL 168 (170)
T ss_dssp HH
T ss_pred Hc
Confidence 44
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=1.1e-17 Score=132.15 Aligned_cols=110 Identities=12% Similarity=0.070 Sum_probs=85.1
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
..+.+.+||++||+.++..|..++++++++|+|+|+++ ..++.....++..+.+ ......|++|++||+
T Consensus 51 ~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~-~~~~~~~iilvgnK~ 119 (166)
T d1z0fa1 51 QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR----------RSTYNHLSSWLTDARN-LTNPNTVIILIGNKA 119 (166)
T ss_dssp EEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTC----------HHHHHTHHHHHHHHHH-HSCTTCEEEEEEECT
T ss_pred EEEEEEEeccCCchhHHHHHHHHhcCCcEEEEEeccCc----------hHHHHHHHHHHHHHHh-hccccceEEEEcccc
Confidence 35789999999999999999999999999999999998 6777777777777654 345678999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+...+... .+-+........+.+++|||++|.||+++|..
T Consensus 120 Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~ 160 (166)
T d1z0fa1 120 DLEAQRDVT-----------------YEEAKQFAEENGLLFLEASAKTGENVEDAFLE 160 (166)
T ss_dssp TCGGGCCSC-----------------HHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred cchhhcccH-----------------HHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 986532111 11112222224577899999999999999963
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=1.6e-17 Score=132.20 Aligned_cols=110 Identities=12% Similarity=0.045 Sum_probs=85.1
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
....+.+||++|++.+..+|..++++++++|+|+|+++ ..++.....++..+.... ..+.|++|++||+
T Consensus 52 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~ 120 (174)
T d2bmea1 52 KYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS----------RETYNALTNWLTDARMLA-SQNIVIILCGNKK 120 (174)
T ss_dssp EEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHS-CTTCEEEEEEECG
T ss_pred cceeEEEEECCCchhhhhhHHHHhhhCCEEEEEEeccc----------chhHHHHhhhhccccccc-CCceEEEEEEecc
Confidence 45789999999999999999999999999999999998 677777777777765532 3579999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+..++... ............+.+++|||++|.||+++|..
T Consensus 121 D~~~~~~~~-----------------~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~ 161 (174)
T d2bmea1 121 DLDADREVT-----------------FLEASRFAQENELMFLETSALTGENVEEAFVQ 161 (174)
T ss_dssp GGGGGCCSC-----------------HHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred cccchhchh-----------------hhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHH
Confidence 986532111 11222222235677899999999999999963
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=9.9e-18 Score=135.61 Aligned_cols=128 Identities=9% Similarity=0.096 Sum_probs=88.9
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
+.+.+++||++|++.++..|..||++++++|+|+|+++ ..+++....++....... ..++|++|++||+
T Consensus 49 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~Sf~~~~~~~~~~~~~~-~~~~~i~lvgnK~ 117 (191)
T d2ngra_ 49 EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS----------PSSFENVKEKWVPEITHH-CPKTPFLLVGTQI 117 (191)
T ss_dssp EEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH-CTTCCEEEEEECG
T ss_pred ceeeeeccccccchhhhhhhhhcccccceeecccccch----------HHHHHHHHHHHHHHHhhc-CCCCceEEEeccc
Confidence 34678999999999999999999999999999999999 778888877777766542 3579999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehhhHHHhhc
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
|+...+.....+.. .+......+...+.... ..+.+++|||++|.||+++|+. ++...+
T Consensus 118 Dl~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~V~e~f~~-l~~~~~ 177 (191)
T d2ngra_ 118 DLRDDPSTIEKLAK-----NKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE-AILAAL 177 (191)
T ss_dssp GGGGCHHHHHHHHT-----TTCCCCCHHHHHHHHHHTTCSCEEECCTTTCTTHHHHHHH-HHHHHT
T ss_pred cccccchhhhhhhh-----cccccccHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHH-HHHHHh
Confidence 99764322111000 00000001111111112 3356889999999999999984 443333
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.70 E-value=7.6e-18 Score=134.10 Aligned_cols=134 Identities=12% Similarity=0.126 Sum_probs=78.4
Q ss_pred cccCCCCCCcCccccceeeecccceeE--EEEeee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccc
Q psy6623 68 DRLGAKEYQPTEQDILRTRVKTTGIVE--VHFSFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLH 143 (262)
Q Consensus 68 ~ri~~~~y~pt~~Dil~~~~pT~Gi~~--~~~~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~ 143 (262)
.|+....|.++. .||+|... ..+.++ .+.+++||++|++.++..|..++++++++|+|+|+++
T Consensus 24 ~~l~~~~~~~~~-------~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v~d~~~------ 90 (173)
T d2fu5c1 24 FRFSEDAFNSTF-------ISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITN------ 90 (173)
T ss_dssp ----------CH-------HHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTC------
T ss_pred HHHHhCCCCCcc-------CccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEEEEECCC------
Confidence 455555554433 56776543 334443 4788999999999999999999999999999999998
Q ss_pred cCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecc
Q psy6623 144 EDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNK 223 (262)
Q Consensus 144 e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~t 223 (262)
..++.....++..+.+ ....+.|++|++||.|+...+... ..-+........+.+++|
T Consensus 91 ----~~s~~~~~~~~~~~~~-~~~~~~~iilv~~k~D~~~~~~~~-----------------~~~~~~~~~~~~~~~~e~ 148 (173)
T d2fu5c1 91 ----EKSFDNIRNWIRNIEE-HASADVEKMILGNKCDVNDKRQVS-----------------KERGEKLALDYGIKFMET 148 (173)
T ss_dssp ----HHHHHHHHHHHHHHHH-HSCTTCEEEEEEEC--CCSCCCSC-----------------HHHHHHHHHHHTCEEEEC
T ss_pred ----hhhHHHHHHHHHHhhh-hccCCceEEEEEecccchhhcccH-----------------HHHHHHHHHhcCCEEEEE
Confidence 6778888777777754 345679999999999976432110 111112223356778999
Q ss_pred cccccceeeeeeh
Q psy6623 224 WFTDTSIILFLNK 236 (262)
Q Consensus 224 sA~d~~~I~~~f~ 236 (262)
||++|+||.++|.
T Consensus 149 Sa~~g~gv~e~f~ 161 (173)
T d2fu5c1 149 SAKANINVENAFF 161 (173)
T ss_dssp CC---CCHHHHHH
T ss_pred eCCCCCCHHHHHH
Confidence 9999999999995
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=1.1e-17 Score=132.63 Aligned_cols=109 Identities=13% Similarity=0.078 Sum_probs=79.8
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+++++||++|++.+. .+..|+++++++|+|+|+++ ..++.....++..........++|++|+|||+|
T Consensus 49 ~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~D 117 (168)
T d2atva1 49 VVSMEILDTAGQEDTI-QREGHMRWGEGFVLVYDITD----------RGSFEEVLPLKNILDEIKKPKNVTLILVGNKAD 117 (168)
T ss_dssp EEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGG
T ss_pred ceEEEEeecccccccc-cchhhhcccccceeecccCC----------ccchhhhhhhcccccccccccCcceeeeccchh
Confidence 4789999999998875 56678999999999999998 666666666655444434456899999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccc-eeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTS-IILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~-~I~~~f~~ 237 (262)
+..++... .+-+.+......+.+++|||++|. ||+++|..
T Consensus 118 l~~~r~V~-----------------~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~ 158 (168)
T d2atva1 118 LDHSRQVS-----------------TEEGEKLATELACAFYECSACTGEGNITEIFYE 158 (168)
T ss_dssp GGGGCCSC-----------------HHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHH
T ss_pred hhhhccCc-----------------HHHHHHHHHHhCCeEEEEccccCCcCHHHHHHH
Confidence 97643211 111112122245778999999998 69999974
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=8.6e-18 Score=134.97 Aligned_cols=130 Identities=13% Similarity=0.050 Sum_probs=89.0
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
+.+++.+||++|++.++..+..|+++++++|+|+|+++ ..+++....++...+.. ...++|++||+||+
T Consensus 51 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~sf~~i~~~~~~~~~~-~~~~~piilvgnK~ 119 (183)
T d1mh1a_ 51 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVS----------PASFENVRAKWYPEVRH-HCPNTPIILVGTKL 119 (183)
T ss_dssp EEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHH-HSTTSCEEEEEECH
T ss_pred cceEEEeecccccccchhhhhhcccccceeeeeeccch----------HHHHHHHHHHHHHHHHH-hCCCCcEEEEeecc
Confidence 45778999999999999999999999999999999998 67777776666666653 34579999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehhhHHHhhccC
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKKDLFEEKIKK 246 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~~ 246 (262)
|+..++......... ...... ..-.....+. ..+.+++|||++|.||+++|.. +....+.+
T Consensus 120 Dl~~~~~~~~~~~~~---~~~~~~--~~~~~~~a~~~~~~~~~E~SAk~~~~V~e~F~~-l~~~il~p 181 (183)
T d1mh1a_ 120 DLRDDKDTIEKLKEK---KLTPIT--YPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE-AIRAVLCP 181 (183)
T ss_dssp HHHTCHHHHHHHHHT---TCCCCC--HHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHH-HHHHHSCC
T ss_pred cchhhhhhhhhhhhc---cccchh--hHHHHHHHHHcCCceEEEcCCCCCcCHHHHHHH-HHHHHcCC
Confidence 997643221110000 000000 1111111122 3367889999999999999973 44444443
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=9.4e-18 Score=134.04 Aligned_cols=116 Identities=13% Similarity=0.108 Sum_probs=91.0
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
..+++.+||++|++.++.+|..++.+++++|+|+|+++ .+++.....++..+.........|+++++||.
T Consensus 54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~ 123 (177)
T d1x3sa1 54 NKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTR----------RDTFVKLDNWLNELETYCTRNDIVNMLVGNKI 123 (177)
T ss_dssp EEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHTTCCSCSCCEEEEEEECT
T ss_pred cccEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCC----------ccccccchhhhhhhcccccccceeeEEEeecc
Confidence 45789999999999999999999999999999999998 78889999999998876666789999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
|.....+. ...+........+.+++|||++|+||.++|+. ++...+
T Consensus 124 d~~~~~v~------------------~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~-l~~~l~ 169 (177)
T d1x3sa1 124 DKENREVD------------------RNEGLKFARKHSMLFIEASAKTCDGVQCAFEE-LVEKII 169 (177)
T ss_dssp TSSSCCSC------------------HHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH-HHHHHH
T ss_pred cccccccc------------------HHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHH-HHHHHc
Confidence 97542111 11122222225677899999999999999963 333333
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=5e-17 Score=129.49 Aligned_cols=109 Identities=11% Similarity=0.112 Sum_probs=85.9
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+.+||++|++.++..|..++++++++|+|+|+++ ..++....+++..+.+.. ..++|++|||||+|
T Consensus 52 ~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v~d~~~----------~~S~~~~~~~~~~i~~~~-~~~~piilvgnK~D 120 (175)
T d2f9la1 52 TIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAK----------HLTYENVERWLKELRDHA-DSNIVIMLVGNKSD 120 (175)
T ss_dssp EEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTT
T ss_pred EEEEEecccCCcHHHHHHHHHHhhccCeEEEEEECCC----------cccchhHHHHHHHHHHhc-CCCCcEEEEEeeec
Confidence 4788999999999999999999999999999999998 788888888888876543 35799999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+..++... ..............+++|||++|.||+++|..
T Consensus 121 l~~~~~~~-----------------~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~ 160 (175)
T d2f9la1 121 LRHLRAVP-----------------TDEARAFAEKNNLSFIETSALDSTNVEEAFKN 160 (175)
T ss_dssp CGGGCCSC-----------------HHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred ccccccch-----------------HHHHHHhhcccCceEEEEecCCCcCHHHHHHH
Confidence 97642111 11112222224567899999999999999974
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=3.5e-17 Score=130.18 Aligned_cols=110 Identities=14% Similarity=0.132 Sum_probs=87.2
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
+.+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....++..+.+. ...++|++|++||+
T Consensus 50 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~sf~~~~~~~~~~~~~-~~~~~piilv~nK~ 118 (173)
T d2a5ja1 50 KQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLTSWLEDARQH-SSSNMVIMLIGNKS 118 (173)
T ss_dssp EEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-SCTTCEEEEEEECT
T ss_pred eEEEEEeecccCccchhhHHHHHhhccCEEEEEEeecC----------hHHHHhHHHHHHHHHHh-CCCCCeEEEEecCC
Confidence 45789999999999999999999999999999999999 78888888888888754 23579999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+..++... .+..........+.+++|||++|.||+++|..
T Consensus 119 D~~~~~~~~-----------------~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~ 159 (173)
T d2a5ja1 119 DLESRRDVK-----------------REEGEAFAREHGLIFMETSAKTACNVEEAFIN 159 (173)
T ss_dssp TCGGGCCSC-----------------HHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred chhhhhhhH-----------------HHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 986543221 11111112224567889999999999999974
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.67 E-value=9.4e-17 Score=127.11 Aligned_cols=126 Identities=12% Similarity=0.100 Sum_probs=92.1
Q ss_pred ecccceeEE--EEee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEV--HFSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~--~~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|.... .+.. ..+.+.+||++|++.+..+|..++.+++++|+|+|+++ ..++.....++..+.
T Consensus 33 ~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~~~ 102 (170)
T d1ek0a_ 33 EPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTK----------PQSFIKARHWVKELH 102 (170)
T ss_dssp CCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHH
T ss_pred cccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEEEeCCc----------ccchhhhhhhhhhhc
Confidence 455554332 3333 34789999999999999999999999999999999998 778888888877665
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.. .....|+++++||+|+..+... ..+. .+-+.+......+.+++|||++|.||+++|..
T Consensus 103 ~~-~~~~~~~~~v~nk~d~~~~~~~-~~v~-------------~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~~ 162 (170)
T d1ek0a_ 103 EQ-ASKDIIIALVGNKIDMLQEGGE-RKVA-------------REEGEKLAEEKGLLFFETSAKTGENVNDVFLG 162 (170)
T ss_dssp HH-SCTTCEEEEEEECGGGGGSSCC-CCSC-------------HHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred cc-cccccceeeeecccccccccch-hhhh-------------HHHHHHHHHHcCCEEEEecCCCCcCHHHHHHH
Confidence 53 3457899999999998763211 1111 11222222235678899999999999999963
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=5.4e-17 Score=128.73 Aligned_cols=110 Identities=13% Similarity=0.082 Sum_probs=82.9
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+.+||++|++.+...+..++++++++|+|+|+++ ..++.....|+..+.......+.|++|++||+|
T Consensus 52 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~D 121 (171)
T d2erya1 52 AARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTD----------RGSFEEIYKFQRQILRVKDRDEFPMILIGNKAD 121 (171)
T ss_dssp EEEEEEEECC----CCHHHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTT
T ss_pred ccccccccccccccccccccccccccceEEEeecccc----------ccchhhHHHHhHHHHhhcccCCCCEEEEEeccc
Confidence 4678999999999999999999999999999999998 778888888888877655556899999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+..++... .+-+.+......+.+++|||++|.||.++|..
T Consensus 122 l~~~~~v~-----------------~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~ 161 (171)
T d2erya1 122 LDHQRQVT-----------------QEEGQQLARQLKVTYMEASAKIRMNVDQAFHE 161 (171)
T ss_dssp CTTSCSSC-----------------HHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred hhhhccch-----------------HHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHH
Confidence 86532111 11122222225567889999999999999974
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.64 E-value=1.1e-16 Score=128.25 Aligned_cols=121 Identities=14% Similarity=0.137 Sum_probs=84.3
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+++||++|++.++..+..++++++++|+|+|+++ ..+++....+|...+... ..++|++|||||+|
T Consensus 49 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~Sf~~~~~~~~~~~~~~-~~~~~iilVgnK~D 117 (179)
T d1m7ba_ 49 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISR----------PETLDSVLKKWKGEIQEF-CPNTKMLLVGCKSD 117 (179)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH-CTTCEEEEEEECGG
T ss_pred EEeeccccccccccccccccchhhhhhhhheeeeccc----------CCCHHHHHHHHHHHHhcc-CCcceEEEEEeccc
Confidence 4778999999999999999999999999999999998 788888888887776532 35799999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccce-eeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSI-ILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~-I~~~f~~ 237 (262)
+........++.. .+......+-..+.... ....+++|||++|.| |+++|+.
T Consensus 118 l~~~~~~~~~~~~-----~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~~~n~i~~~F~~ 171 (179)
T d1m7ba_ 118 LRTDVSTLVELSN-----HRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHV 171 (179)
T ss_dssp GGGCHHHHHHHHT-----TTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHH
T ss_pred ccccchhhHHHhh-----hhcCcchHHHHHHHHHHhCCCeEEEEeCCCCCcCHHHHHHH
Confidence 8653211110000 00000001111111112 235678999999985 9999974
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=3.5e-17 Score=129.22 Aligned_cols=110 Identities=13% Similarity=0.086 Sum_probs=85.8
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
..+.+.+||++|++.++..+..++++++++|+|+|+++ ..+++....|+..+.+.....++|++|++||+
T Consensus 49 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 118 (166)
T d1ctqa_ 49 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINN----------TKSFEDIHQYREQIKRVKDSDDVPMVLVGNKC 118 (166)
T ss_dssp EEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHHTCSSCCEEEEEECT
T ss_pred eeeeeeeeeccCccccccchhhhhhcccccceeecccc----------cccHHHHHHHHHHHHHhcCCCCCeEEEEeccc
Confidence 34779999999999999999999999999999999998 77888888888877765555679999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+..+... .+-+.+......+.+++|||++|+||+++|..
T Consensus 119 Dl~~~~~~------------------~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~ 158 (166)
T d1ctqa_ 119 DLAARTVE------------------SRQAQDLARSYGIPYIETSAKTRQGVEDAFYT 158 (166)
T ss_dssp TCSCCCSC------------------HHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred cccccccc------------------HHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHH
Confidence 98532110 11111111224567889999999999999963
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.64 E-value=2.2e-16 Score=125.39 Aligned_cols=111 Identities=12% Similarity=0.046 Sum_probs=72.3
Q ss_pred cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh---CCCCCCCeEEEEeeC
Q psy6623 102 LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN---NKWFTDTSIILFLNK 178 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~---~~~~~~~piil~~NK 178 (262)
..+.+||++|++.+...|..+++.++++|+|+|+++ ..++..+..|+..+.. .....++|++|++||
T Consensus 52 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK 121 (175)
T d1ky3a_ 52 ATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTN----------ASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 121 (175)
T ss_dssp EEEEEECCC----------CCSTTCCEEEEEEETTC----------HHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEEC
T ss_pred ccceeeccCCchhhhhHHHHHhhccceEEEEeeccc----------ccccchhhhcchhhhhhhhhcccccCcEEEEecc
Confidence 568999999999999999999999999999999998 5667777667666653 233457899999999
Q ss_pred CchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 179 KDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 179 ~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+|+..++-... ..+...+.+.+ ..+.+++|||++|.||+++|..
T Consensus 122 ~Dl~~~~~~v~-------------~~~~~~~~~~~--~~~~~~e~SA~~g~gv~e~f~~ 165 (175)
T d1ky3a_ 122 IDAEESKKIVS-------------EKSAQELAKSL--GDIPLFLTSAKNAINVDTAFEE 165 (175)
T ss_dssp TTSCGGGCCSC-------------HHHHHHHHHHT--TSCCEEEEBTTTTBSHHHHHHH
T ss_pred cchhhhhcchh-------------HHHHHHHHHHc--CCCeEEEEeCCCCcCHHHHHHH
Confidence 99875421110 00011222222 2355789999999999999964
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.5e-16 Score=126.51 Aligned_cols=108 Identities=17% Similarity=0.153 Sum_probs=80.8
Q ss_pred ccceeeeec---CCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEee
Q psy6623 101 NLNFKLFDV---GGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLN 177 (262)
Q Consensus 101 ~~~~~i~D~---~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~N 177 (262)
...+.+||+ +||+++ ++..|+++++++|+|+|+++ ..++.+...|+..+.......++|++|++|
T Consensus 52 ~~~~~~~d~~~~~g~e~~--~~~~~~~~~~~~ilvfd~t~----------~~s~~~~~~~~~~i~~~~~~~~~piilvgn 119 (172)
T d2g3ya1 52 SATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITD----------RASFEKASELRIQLRRARQTEDIPIILVGN 119 (172)
T ss_dssp EEEEEEECCTTTTHHHHH--HHHCCCCCCSEEEEEEETTC----------HHHHHHHHHHHHHHHTSGGGTTSCEEEEEE
T ss_pred eeeeeeeccccccccccc--cccccccccceeeeeecccc----------cchhhhhhhhhhhhhhccccCCceEEEEec
Confidence 355566664 566655 68889999999999999998 788999999988888765567899999999
Q ss_pred CCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 178 KKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 178 K~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+|+..++... .+-..+......+.+++|||++|.||+++|..
T Consensus 120 K~Dl~~~~~v~-----------------~~~~~~~a~~~~~~~~e~Sak~g~~i~~~f~~ 162 (172)
T d2g3ya1 120 KSDLVRCREVS-----------------VSEGRACAVVFDCKFIETSAAVQHNVKELFEG 162 (172)
T ss_dssp CTTCGGGCCSC-----------------HHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred ccccccccccc-----------------HHHHHHHHHHcCCeEEEEeCCCCcCHHHHHHH
Confidence 99997643111 11111111224577889999999999999964
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.61 E-value=4.7e-16 Score=122.23 Aligned_cols=110 Identities=17% Similarity=0.157 Sum_probs=83.1
Q ss_pred eccceeeeecCCccccch-hhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeC
Q psy6623 100 KNLNFKLFDVGGQRSERK-KWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNK 178 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~-~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK 178 (262)
+...+.+||+.|+..+.. .|..|+++++++|+|+|+++ .+++++...|+..+.+.....++|++|+|||
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK 118 (165)
T d1z06a1 49 ERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTN----------MASFHSLPAWIEECKQHLLANDIPRILVGNK 118 (165)
T ss_dssp EEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHHHHCCCSCCCEEEEEEC
T ss_pred cceEEEEEeccCchhhccccceeeecCCCceEEEEEeeh----------hhhhhhhhhhhHHHHhhccCCCCeEEEEecc
Confidence 557789999999887754 57889999999999999999 7888888888888877655678999999999
Q ss_pred CchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccc---eeeeeeh
Q psy6623 179 KDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTS---IILFLNK 236 (262)
Q Consensus 179 ~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~---~I~~~f~ 236 (262)
+|+..++-.. .+-+.+......+.+++|||++|. ||+++|.
T Consensus 119 ~Dl~~~~~v~-----------------~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~F~ 162 (165)
T d1z06a1 119 CDLRSAIQVP-----------------TDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFM 162 (165)
T ss_dssp TTCGGGCCSC-----------------HHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHH
T ss_pred ccchhccchh-----------------HHHHHHHHHHCCCEEEEEecccCCcCcCHHHHHH
Confidence 9997643111 111112112245678899998755 7777775
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.61 E-value=2.8e-16 Score=123.84 Aligned_cols=121 Identities=12% Similarity=0.162 Sum_probs=82.6
Q ss_pred ecccceeEE--EEeee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEV--HFSFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~--~~~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|.... .+.++ .+.+.+||++||+.++.+|..++++++++|+|+|+++ .+++.....++..+.
T Consensus 32 ~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~ 101 (166)
T d1g16a_ 32 ITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITD----------ERTFTNIKQWFKTVN 101 (166)
T ss_dssp -----CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCC----------ccCHHHHHhhhhhhh
Confidence 566665443 33333 4678899999999999999999999999999999998 555555555554444
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
. ......|+++++||.|+..+.... +-+.+......+.+++|||++|+||.++|.
T Consensus 102 ~-~~~~~~~~i~~~~k~d~~~~~~~~------------------~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~ 156 (166)
T d1g16a_ 102 E-HANDEAQLLLVGNKSDMETRVVTA------------------DQGEALAKELGIPFIESSAKNDDNVNEIFF 156 (166)
T ss_dssp H-HSCTTCEEEEEEECTTCTTCCSCH------------------HHHHHHHHHHTCCEEECBTTTTBSHHHHHH
T ss_pred c-cccCcceeeeecchhhhhhhhhhH------------------HHHHHHHHhcCCeEEEECCCCCCCHHHHHH
Confidence 3 334578999999999975432111 111111122457789999999999999996
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=8.8e-17 Score=128.99 Aligned_cols=123 Identities=11% Similarity=0.053 Sum_probs=88.2
Q ss_pred ecccceeEEEEee----eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEVHFSF----KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~~~~~----~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|........ ..+.+.+||++|+...+..|..++.+++++|+|+|+++ ..++.....|+..+.
T Consensus 32 ~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~----------~~~~~~~~~~~~~i~ 101 (184)
T d1vg8a_ 32 KATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTA----------PNTFKTLDSWRDEFL 101 (184)
T ss_dssp CCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEeecccc----------hhhhhcchhhHHHHH
Confidence 5677765444433 34678999999999999999999999999999999998 566666666665554
Q ss_pred h---CCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehh
Q psy6623 163 N---NKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~---~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
. .....++|++|++||+|+..++... +-....... ..+.+++|||++|.||+++|..
T Consensus 102 ~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~------------------~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~ 162 (184)
T d1vg8a_ 102 IQASPRDPENFPFVVLGNKIDLENRQVAT------------------KRAQAWCYSKNNIPYFETSAKEAINVEQAFQT 162 (184)
T ss_dssp HHHCCSSGGGSCEEEEEECTTSSCCCSCH------------------HHHHHHHHHTTSCCEEECBTTTTBSHHHHHHH
T ss_pred HHhccccccCCCEEEEEEeecccccchhH------------------HHHHHHHHHhcCCeEEEEcCCCCcCHHHHHHH
Confidence 3 2334578999999999985422111 111111111 3466789999999999999974
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=2.6e-16 Score=125.04 Aligned_cols=108 Identities=12% Similarity=0.141 Sum_probs=79.6
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHH---HhCCCCCCCeEEEEee
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSI---CNNKWFTDTSIILFLN 177 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i---~~~~~~~~~piil~~N 177 (262)
.+.+.+||++|+...+..|..++..++++|+++|+++ ..++.....|++.+ .+.....++|++||||
T Consensus 54 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgn 123 (174)
T d1wmsa_ 54 FVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDD----------SQSFQNLSNWKKEFIYYADVKEPESFPFVILGN 123 (174)
T ss_dssp EEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEE
T ss_pred eeeEeeecccCcceehhhhhhhhhccceEEEEEeeec----------ccccchhhhHHHHHHHHhccccCCCceEEEecc
Confidence 4778999999999999999999999999999999998 45555555555444 4444456799999999
Q ss_pred CCchhhhhhccCCCcccCCCCCCCCcch-hHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 178 KKDLFEEKIKKSPLTICFPEYAGKRPGE-RNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 178 K~Dl~~~kl~~~~l~~~fp~~~g~~~~~-~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
|+|+.+..+.. .+ .++..+. ..+.+++|||++|.||.++|.
T Consensus 124 K~Dl~~~~v~~---------------~~~~~~~~~~---~~~~~~e~Sak~~~gI~e~f~ 165 (174)
T d1wmsa_ 124 KIDISERQVST---------------EEAQAWCRDN---GDYPYFETSAKDATNVAAAFE 165 (174)
T ss_dssp CTTCSSCSSCH---------------HHHHHHHHHT---TCCCEEECCTTTCTTHHHHHH
T ss_pred ccchhhccCcH---------------HHHHHHHHHc---CCCeEEEEcCCCCcCHHHHHH
Confidence 99985321110 01 2233221 235678999999999999996
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.58 E-value=1.6e-15 Score=117.54 Aligned_cols=127 Identities=22% Similarity=0.330 Sum_probs=96.5
Q ss_pred eeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCe
Q psy6623 92 IVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTS 171 (262)
Q Consensus 92 i~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~p 171 (262)
..........+.+.+||++|++.++..|..++.+++++|+++|+++ ...+..+..++..+........+|
T Consensus 34 ~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 103 (160)
T d1r8sa_ 34 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RERVNEAREELMRMLAEDELRDAV 103 (160)
T ss_dssp CCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCGGGTTCE
T ss_pred eEEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecC----------hHHHHHHHHHHHHHHHhhcccCce
Confidence 3444556678899999999999999999999999999999999998 678888889999998877778899
Q ss_pred EEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 172 IILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 172 iil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
+++++||.|+....... ++. ............+.+++|||++|+||.++| +||.+++
T Consensus 104 i~~v~~k~d~~~~~~~~-~i~-------------~~~~~~~~~~~~~~~~~~SAktg~gi~e~~--~~l~~~l 160 (160)
T d1r8sa_ 104 LLVFANKQDLPNAMNAA-EIT-------------DKLGLHSLRHRNWYIQATCATSGDGLYEGL--DWLSNQL 160 (160)
T ss_dssp EEEEEECTTSTTCCCHH-HHH-------------HHTTGGGCSSCCEEEEECBTTTTBTHHHHH--HHHHHHC
T ss_pred EEEEeecccccccccHH-HHH-------------HHHHHHHHhhCCCEEEEeECCCCCCHHHHH--HHHHhcC
Confidence 99999999986521000 000 000001112256788999999999999999 5666553
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.55 E-value=3.9e-15 Score=117.77 Aligned_cols=132 Identities=17% Similarity=0.228 Sum_probs=99.1
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.+|.|.....+...++.+.+||++|++..+..|..++..++++++|+|.++ ..++......+........
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~d~~d----------~~~~~~~~~~~~~~~~~~~ 113 (177)
T d1zj6a1 44 SPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD----------RERISVTREELYKMLAHED 113 (177)
T ss_dssp ECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTC----------TTTHHHHHHHHHHHHTSGG
T ss_pred ccccceeEEEEeecceEEEEeccccccccccchhhhhccceeeeeeccccc----------ccchhhhhhhhhhhhhccc
Confidence 577777777788888999999999999999999999999999999999998 6778888777777777777
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHH-HhhhccceeecccccccceeeeeehhhHHHhhcc
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQE-SLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK 245 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~-~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~ 245 (262)
..+.|++|++||+|+..... ..++ .+.... ....+.+.++++||++|+||+++| +||.+.++
T Consensus 114 ~~~~p~iiv~nK~Dl~~~~~-~~~i--------------~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~~--~~L~~~lk 176 (177)
T d1zj6a1 114 LRKAGLLIFANKQDVKECMT-VAEI--------------SQFLKLTSIKDHQWHIQACCALTGEGLCQGL--EWMMSRLK 176 (177)
T ss_dssp GTTCEEEEEEECTTSTTCCC-HHHH--------------HHHHTGGGCCSSCEEEEECBTTTTBTHHHHH--HHHHHHHC
T ss_pred ccceEEEEEEEcccccccCc-HHHH--------------HHHHHHHhhHhcCCEEEEEeCCCCCCHHHHH--HHHHHHhC
Confidence 78999999999999864210 0000 111111 112266789999999999999999 56766543
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=3.2e-14 Score=113.30 Aligned_cols=108 Identities=9% Similarity=0.019 Sum_probs=73.9
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH--hCCCCCCCeEEEEee
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC--NNKWFTDTSIILFLN 177 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~--~~~~~~~~piil~~N 177 (262)
..+.+.+||++|+..+ +|+++++++|+|+|+++ ..+++....|...+. +.....++|++||+|
T Consensus 50 ~~~~l~i~Dt~g~~~~-----~~~~~ad~~ilVfd~~~----------~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~ 114 (175)
T d2bmja1 50 QTHLVLIREEAGAPDA-----KFSGWADAVIFVFSLED----------ENSFQAVSRLHGQLSSLRGEGRGGLALALVGT 114 (175)
T ss_dssp EEEEEEEEECSSCCCH-----HHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHCC--CCCCEEEEEEE
T ss_pred eEEEEEEeeccccccc-----ccccccceeEEEeeccc----------chhhhhhHHHHHHHHHHhhcccCCccEEEEee
Confidence 3477999999999865 38899999999999998 666666666555543 223346789999999
Q ss_pred CCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehh
Q psy6623 178 KKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 178 K~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|.|+..+. ...+. ..-+.....+ ..+.+++|||++|.||.++|..
T Consensus 115 k~d~d~~~--~~~v~-------------~~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~ 160 (175)
T d2bmja1 115 QDRISASS--PRVVG-------------DARARALCADMKRCSYYETCATYGLNVDRVFQE 160 (175)
T ss_dssp CTTCCSSS--CCCSC-------------HHHHHHHHHTSTTEEEEEEBTTTTBTHHHHHHH
T ss_pred ecCcchhh--hcchh-------------HHHHHHHHHHhCCCeEEEeCCCCCcCHHHHHHH
Confidence 99974321 11110 1111111122 3467889999999999999974
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.44 E-value=3e-13 Score=104.37 Aligned_cols=137 Identities=18% Similarity=0.193 Sum_probs=101.8
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||.|........++....+||+.|.......|..++..++++++++|.++ ...+.....++....+...
T Consensus 29 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~----------~~~~~~~~~~~~~~~~~~~ 98 (166)
T d2qtvb1 29 QPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAAD----------PERFDEARVELDALFNIAE 98 (166)
T ss_dssp CCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCTT
T ss_pred eceeeEeEEEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccccc----------hhhhhhhhHHHHhhhhhhc
Confidence 688888888888889999999999999999999999999999999999998 6777888888888888888
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHh
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 242 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~ 242 (262)
..+.|+++++||.|+.... ....+.+.+....-. -.......+.+.+++|||++|+||+++| +||.+
T Consensus 99 ~~~~~i~i~~~k~d~~~~~-~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~~SA~tg~Gv~e~~--~~l~~ 165 (166)
T d2qtvb1 99 LKDVPFVILGNKIDAPNAV-SEAELRSALGLLNTT------GSQRIEGQRPVEVFMCSVVMRNGYLEAF--QWLSQ 165 (166)
T ss_dssp TTTCCEEEEEECTTSSSCC-CHHHHHHHHTCSSCC------C---CCSSCCEEEEEEBTTTTBSHHHHH--HHHTT
T ss_pred cCCceEEEEeccccccccC-CHHHHHHHhhhhhhh------HHHhhcccCCCEEEEeeCCCCCCHHHHH--HHHhC
Confidence 8899999999999986421 000000000000000 0000001156788999999999999999 56653
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.37 E-value=1.4e-12 Score=102.80 Aligned_cols=144 Identities=19% Similarity=0.201 Sum_probs=97.8
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||.+.+...+.+++.....||+.|+...+..|.++++..+++++++|+++ .....+....+......+.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d----------~~~~~~~~~~~~~~~~~~~ 111 (186)
T d1f6ba_ 42 VPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCAD----------HERLLESKEELDSLMTDET 111 (186)
T ss_dssp -CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCGG
T ss_pred ecccccceeEEEecccccccccccchhhhhhHHhhhhcccceeeeeeeccC----------ccchHHHHHHHHHhhcccc
Confidence 577787777888888999999999999999999999999999999999998 6777888888877777777
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
..+.|++|++||.|+.... ....+...+........... -.......+.+.+++|||++|+||+++| +||.+.+
T Consensus 112 ~~~~~~li~~~K~D~~~~~-~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~SA~tg~Gi~e~~--~~l~~~i 185 (186)
T d1f6ba_ 112 IANVPILILGNKIDRPEAI-SEERLREMFGLYGQTTGKGS-VSLKELNARPLEVFMCSVLKRQGYGEGF--RWMAQYI 185 (186)
T ss_dssp GTTSCEEEEEECTTSTTCC-CHHHHHHHHTCTTTCCCSSC-CCTTTCCSCCEEEEECBTTTTBSHHHHH--HHHHTTC
T ss_pred cCCCceEEEEeccCccccC-CHHHHHHHHhhcccchhhhh-hhHHHhhcCCCEEEEEeCCCCCCHHHHH--HHHHHhh
Confidence 7899999999999986421 00000000000000000000 0000011256778899999999999999 5887654
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.35 E-value=1.7e-12 Score=100.72 Aligned_cols=131 Identities=20% Similarity=0.289 Sum_probs=100.8
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.+|.|........+++.+.+||.+|....+..|..++..++++++++|+++ ..+.......+........
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~ 103 (169)
T d1upta_ 34 IPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCD----------RDRIGISKSELVAMLEEEE 103 (169)
T ss_dssp CCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTC----------CTTHHHHHHHHHHHHTCGG
T ss_pred ecccceeeeeeccCceEEEEeeccccccccccchhhhhhhhhhhhhhhhhh----------cchhhhccchhhhhhhhhc
Confidence 477888777788889999999999999999999999999999999999998 5677777777777777666
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHH-HhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQE-SLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~-~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
....|+++++||.|+..+.... ++ ...+.. ....+.+.+++|||++|+||+++|+ +|.+.+
T Consensus 104 ~~~~~i~iv~nk~Dl~~~~~~~-~i--------------~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~--~l~~~l 165 (169)
T d1upta_ 104 LRKAILVVFANKQDMEQAMTSS-EM--------------ANSLGLPALKDRKWQIFKTSATKGTGLDEAME--WLVETL 165 (169)
T ss_dssp GTTCEEEEEEECTTSTTCCCHH-HH--------------HHHHTGGGCTTSCEEEEECCTTTCTTHHHHHH--HHHHHH
T ss_pred cccceEEEEEeeccccccccHH-HH--------------HHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHH--HHHHHH
Confidence 7789999999999986532110 00 111111 1122567889999999999999995 454444
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.20 E-value=2.2e-11 Score=96.25 Aligned_cols=120 Identities=13% Similarity=0.068 Sum_probs=75.6
Q ss_pred eeEEEEeeeccceeeeecCCccccchhh--------hccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh
Q psy6623 92 IVEVHFSFKNLNFKLFDVGGQRSERKKW--------IHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN 163 (262)
Q Consensus 92 i~~~~~~~~~~~~~i~D~~Gq~~~r~~w--------~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~ 163 (262)
.........+..+.+|||+|+......+ ..++++++++|+|+|.++ . +.....++...++
T Consensus 43 ~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~----------~--~~~~~~~i~~~l~ 110 (178)
T d1wf3a1 43 RLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRH----------P--PTPEDELVARALK 110 (178)
T ss_dssp CEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTS----------C--CCHHHHHHHHHHG
T ss_pred cccceeeeeeeeeeecccccccccccccchhcccccccccccccceeeeechhh----------h--hcccccchhhhee
Confidence 3344455667889999999986544433 345688999999999876 1 1122233334443
Q ss_pred CCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhh
Q psy6623 164 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEK 243 (262)
Q Consensus 164 ~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~ 243 (262)
. ...+.|+++|+||+|+....-. ..+.+.+.+. ...++++||++|.||.++++ ++.+.
T Consensus 111 ~-~~~~~piilv~NK~Dl~~~~~~-----------------~~~~~~~~~~--~~~~~~iSA~~~~gi~~L~~--~i~~~ 168 (178)
T d1wf3a1 111 P-LVGKVPILLVGNKLDAAKYPEE-----------------AMKAYHELLP--EAEPRMLSALDERQVAELKA--DLLAL 168 (178)
T ss_dssp G-GTTTSCEEEEEECGGGCSSHHH-----------------HHHHHHHTST--TSEEEECCTTCHHHHHHHHH--HHHTT
T ss_pred c-cccchhhhhhhcccccccCHHH-----------------HHHHHHhhcc--cCceEEEecCCCCCHHHHHH--HHHHh
Confidence 2 2357899999999998542100 0222333222 23467799999999999985 45555
Q ss_pred cc
Q psy6623 244 IK 245 (262)
Q Consensus 244 i~ 245 (262)
+.
T Consensus 169 lp 170 (178)
T d1wf3a1 169 MP 170 (178)
T ss_dssp CC
T ss_pred CC
Confidence 43
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.06 E-value=7.9e-11 Score=95.15 Aligned_cols=87 Identities=14% Similarity=0.243 Sum_probs=65.1
Q ss_pred cccceeEEEEee---eccceeeeecCCccccc-hhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh
Q psy6623 88 KTTGIVEVHFSF---KNLNFKLFDVGGQRSER-KKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN 163 (262)
Q Consensus 88 pT~Gi~~~~~~~---~~~~~~i~D~~Gq~~~r-~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~ 163 (262)
||+|.+...+.+ .++.+.+||++|++.++ ..|..++++++++++|+|+++. ...+.+..+++..++.
T Consensus 30 ~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~~d~---------~~~~~~~~~~l~~~l~ 100 (207)
T d2fh5b1 30 TSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAF---------QREVKDVAEFLYQVLI 100 (207)
T ss_dssp CCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTH---------HHHHHHHHHHHHHHHH
T ss_pred CCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEEcccc---------cccHHHHHHHHHHHHH
Confidence 666666665655 35789999999999886 5788899999999999999972 1234566666666653
Q ss_pred CC--CCCCCeEEEEeeCCchhh
Q psy6623 164 NK--WFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 164 ~~--~~~~~piil~~NK~Dl~~ 183 (262)
.. ...++|++|++||+|++.
T Consensus 101 ~~~~~~~~~pilvv~NK~Dl~~ 122 (207)
T d2fh5b1 101 DSMALKNSPSLLIACNKQDIAM 122 (207)
T ss_dssp HHHTSTTCCEEEEEEECTTSTT
T ss_pred hHHHhhcCCcEEEEEECcccCC
Confidence 22 234689999999999975
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=98.93 E-value=4e-10 Score=86.95 Aligned_cols=111 Identities=14% Similarity=0.173 Sum_probs=72.4
Q ss_pred EEEeeeccceeeeecCCccccchh--------hhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 95 VHFSFKNLNFKLFDVGGQRSERKK--------WIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 95 ~~~~~~~~~~~i~D~~Gq~~~r~~--------w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
..+...+..+.+||++|....... ...++++++++++++|.++. ....+. .++..+... .
T Consensus 42 ~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~----------~~~~~~-~~~~~~~~~-~ 109 (161)
T d2gj8a1 42 EHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTT----------DAVDPA-EIWPEFIAR-L 109 (161)
T ss_dssp EEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTC----------CCCSHH-HHCHHHHHH-S
T ss_pred eeeeccCceeeeccccccccccccchhHHHHHHHHHHHhccccceeeccccc----------cchhhh-hhhhhhhhh-c
Confidence 445667788999999997554332 34567899999999999873 222222 222333322 1
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhh
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEK 243 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~ 243 (262)
..+.|++|++||+|+..+..... +. ....++++||++|+||+++++ +|.++
T Consensus 110 ~~~~~iilv~NK~Dl~~~~~~~~-------~~-----------------~~~~~~~iSAk~~~gi~~L~~--~l~~~ 160 (161)
T d2gj8a1 110 PAKLPITVVRNKADITGETLGMS-------EV-----------------NGHALIRLSARTGEGVDVLRN--HLKQS 160 (161)
T ss_dssp CTTCCEEEEEECHHHHCCCCEEE-------EE-----------------TTEEEEECCTTTCTTHHHHHH--HHHHH
T ss_pred ccccceeeccchhhhhhhHHHHH-------Hh-----------------CCCcEEEEECCCCCCHHHHHH--HHHhh
Confidence 24689999999999865322111 11 224577899999999999884 45443
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=98.93 E-value=8.6e-10 Score=86.89 Aligned_cols=109 Identities=13% Similarity=0.126 Sum_probs=69.2
Q ss_pred eccceeeeecCCcccc-------chhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeE
Q psy6623 100 KNLNFKLFDVGGQRSE-------RKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSI 172 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~-------r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pi 172 (262)
++..+++|||+|.... ......+...++.+++++|.+... ...+.....++.... ....+.|+
T Consensus 47 ~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~--------~~~~~~~~~~~~~~~--~~~~~~p~ 116 (180)
T d1udxa2 47 EEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEP--------LKTLETLRKEVGAYD--PALLRRPS 116 (180)
T ss_dssp SSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCH--------HHHHHHHHHHHHHHC--HHHHHSCE
T ss_pred CCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhhhhhhccccccc--------ccchhhhhhhhhccc--cccchhhh
Confidence 4577999999995432 223334567899999999987521 122223333332211 11235799
Q ss_pred EEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 173 ILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 173 il~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
++++||+|+..+.. .+-+.+.+....+.++.+||++|+||+++++.
T Consensus 117 iiv~NK~D~~~~~~-------------------~~~~~~~~~~~~~~~~~iSA~tg~gid~L~~~ 162 (180)
T d1udxa2 117 LVALNKVDLLEEEA-------------------VKALADALAREGLAVLPVSALTGAGLPALKEA 162 (180)
T ss_dssp EEEEECCTTSCHHH-------------------HHHHHHHHHTTTSCEEECCTTTCTTHHHHHHH
T ss_pred hhhhhhhhhhhHHH-------------------HHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHH
Confidence 99999999965321 22233344445667889999999999999964
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=98.88 E-value=3.5e-10 Score=89.49 Aligned_cols=123 Identities=13% Similarity=0.052 Sum_probs=79.7
Q ss_pred eEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeE
Q psy6623 93 VEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSI 172 (262)
Q Consensus 93 ~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pi 172 (262)
....+...+..+.++|++|+..+.+........++++++|+|.++ .........+..+.. .++|+
T Consensus 50 ~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~~d~~ilv~d~~~-----------g~~~~~~~~~~~~~~----~~~p~ 114 (179)
T d1wb1a4 50 GFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKE-----------GPKTQTGEHMLILDH----FNIPI 114 (179)
T ss_dssp CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTT-----------CSCHHHHHHHHHHHH----TTCCB
T ss_pred cccccccCCccccccccccccccccchhhhhhhcccccccccccc-----------ccchhhhhhhhhhhh----cCCcc
Confidence 344455677889999999999998888888999999999999986 112233344433332 36899
Q ss_pred EEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehhhHHHhhc
Q psy6623 173 ILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 173 il~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
++++||+|+....-.... .. ..+.+.+.... ....++++||++|+||.++++ .+.+.+
T Consensus 115 iiv~NKiD~~~~~~~~~~-~~-----------~~~~~~~~~~~~~~~~iv~iSA~~g~gi~eL~~--~I~~~l 173 (179)
T d1wb1a4 115 IVVITKSDNAGTEEIKRT-EM-----------IMKSILQSTHNLKNSSIIPISAKTGFGVDELKN--LIITTL 173 (179)
T ss_dssp CEEEECTTSSCHHHHHHH-HH-----------HHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHH--HHHHHH
T ss_pred eeccccccccCHHHHHHH-HH-----------HHHHHHHHhhcCCCCeEEEEEccCCcCHHHHHH--HHHhcC
Confidence 999999998642110000 00 01122221111 334567899999999999985 344443
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=98.82 E-value=4.2e-09 Score=82.12 Aligned_cols=121 Identities=17% Similarity=0.102 Sum_probs=72.2
Q ss_pred ccceeEEEEeeeccceeeeecCCccc---------cchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHH
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRS---------ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFD 159 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~---------~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~ 159 (262)
|.+.....+......+.+||++|... ....+..++..++++++++|.+. ....+...++.
T Consensus 35 t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ad~i~~~~~~~~-----------~~~~~~~~~~~ 103 (171)
T d1mkya1 35 TRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKR-----------GITKEDESLAD 103 (171)
T ss_dssp --CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTT-----------CCCHHHHHHHH
T ss_pred eeccccccccccccccccccccceeeeeccccccccccccccccccCcEEEEeecccc-----------ccccccccccc
Confidence 33444555666778899999999422 23344556788999999999875 12222222332
Q ss_pred HHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhH
Q psy6623 160 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 239 (262)
Q Consensus 160 ~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~l 239 (262)
.+.. .++|++|++||+|+.++.-.. ...+........++++||++|.||+++++ +
T Consensus 104 ~l~~----~~~pviiv~NK~Dl~~~~~~~-------------------~~~~~~~~~~~~~i~iSAk~g~gid~L~~--~ 158 (171)
T d1mkya1 104 FLRK----STVDTILVANKAENLREFERE-------------------VKPELYSLGFGEPIPVSAEHNINLDTMLE--T 158 (171)
T ss_dssp HHHH----HTCCEEEEEESCCSHHHHHHH-------------------THHHHGGGSSCSCEECBTTTTBSHHHHHH--H
T ss_pred cccc----ccccccccchhhhhhhhhhhH-------------------HHHHHHhcCCCCeEEEecCCCCCHHHHHH--H
Confidence 2221 357999999999997532110 01111111122357799999999999995 4
Q ss_pred HHhhcc
Q psy6623 240 FEEKIK 245 (262)
Q Consensus 240 L~~~i~ 245 (262)
|.+.+.
T Consensus 159 i~~~l~ 164 (171)
T d1mkya1 159 IIKKLE 164 (171)
T ss_dssp HHHHHH
T ss_pred HHHhCC
Confidence 444443
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.73 E-value=7.5e-09 Score=84.87 Aligned_cols=72 Identities=13% Similarity=0.035 Sum_probs=55.0
Q ss_pred eeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEee
Q psy6623 98 SFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLN 177 (262)
Q Consensus 98 ~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~N 177 (262)
..++..+.+.||+|++.|-.........++++|+|+|..+ .-.......+..+.. .+.|++|++|
T Consensus 66 ~~~~~~~~~iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~-----------g~~~~~~~~~~~~~~----~~~p~iivlN 130 (227)
T d1g7sa4 66 RETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINE-----------GFKPQTQEALNILRM----YRTPFVVAAN 130 (227)
T ss_dssp GGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTT-----------CCCHHHHHHHHHHHH----TTCCEEEEEE
T ss_pred cccccccccccccceecccccchhcccccceEEEEEeccc-----------CcccchhHHHHHhhc----CCCeEEEEEE
Confidence 3456678999999999998888888899999999999875 222334445544443 3689999999
Q ss_pred CCchhhh
Q psy6623 178 KKDLFEE 184 (262)
Q Consensus 178 K~Dl~~~ 184 (262)
|+|+...
T Consensus 131 K~D~~~~ 137 (227)
T d1g7sa4 131 KIDRIHG 137 (227)
T ss_dssp CGGGSTT
T ss_pred CccCCCc
Confidence 9998753
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.67 E-value=3.2e-09 Score=83.82 Aligned_cols=123 Identities=15% Similarity=0.064 Sum_probs=70.8
Q ss_pred EEEee-eccceeeeecCCccccc----hhhh---ccccCCCEEEEeeeccccccccccCcccccHHHHHH-HHHHHHhCC
Q psy6623 95 VHFSF-KNLNFKLFDVGGQRSER----KKWI---HCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLK-LFDSICNNK 165 (262)
Q Consensus 95 ~~~~~-~~~~~~i~D~~Gq~~~r----~~w~---~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~-~~~~i~~~~ 165 (262)
....+ ++..+.+|||+|....+ ..+. ...+.++.++++++.+..+.. ........ .........
T Consensus 41 ~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~i~~~v~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 113 (185)
T d1lnza2 41 GMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGR-------DPYDDYLTINQELSEYNL 113 (185)
T ss_dssp EEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCC-------CHHHHHHHHHHHHHHSCS
T ss_pred ceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhhhhhheeeecccccc-------hhhhhhhhhhhccchhhh
Confidence 33344 34578999999963322 2222 234568889888887763211 11111111 111222234
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhcc
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK 245 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~ 245 (262)
...+.|++|++||+|+...+-. .+.+.+.+. ....++.+||++|+||+++++. +.+.+.
T Consensus 114 ~~~~kp~ivv~NK~Dl~~~~~~------------------~~~~~~~~~-~~~~v~~iSA~~g~Gi~~L~~~--i~~~L~ 172 (185)
T d1lnza2 114 RLTERPQIIVANKMDMPEAAEN------------------LEAFKEKLT-DDYPVFPISAVTREGLRELLFE--VANQLE 172 (185)
T ss_dssp STTTSCBCBEEECTTSTTHHHH------------------HHHHHHHCC-SCCCBCCCSSCCSSTTHHHHHH--HHHHHT
T ss_pred hccCCcchhhccccchHhHHHH------------------HHHHHHHhc-cCCcEEEEECCCCCCHHHHHHH--HHHhhh
Confidence 5567899999999999764311 122222222 3455788999999999999964 444443
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.65 E-value=4.3e-09 Score=82.63 Aligned_cols=116 Identities=14% Similarity=0.147 Sum_probs=62.8
Q ss_pred ccceeeeecCCcc-----------ccchhh----hccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 101 NLNFKLFDVGGQR-----------SERKKW----IHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 101 ~~~~~i~D~~Gq~-----------~~r~~w----~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
...+++||++|.. ..+..+ ....++++++++|+|.+.....................++.+..
T Consensus 42 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~-- 119 (184)
T d2cxxa1 42 WKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE-- 119 (184)
T ss_dssp ETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--
T ss_pred cccceecccCCceeccccccccccccchhhhhhhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH--
Confidence 3457899999942 112222 23457899999999987532111100000001111223333322
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh----ccceeecccccccceeeeeehh
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL----FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~----~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+.|+++|+||+|+...+-.. .+.+...+.. ....++++||++|.||.++++.
T Consensus 120 --~~~p~iiv~NK~D~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~ 176 (184)
T d2cxxa1 120 --LDIPTIVAVNKLDKIKNVQEV-----------------INFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNR 176 (184)
T ss_dssp --TTCCEEEEEECGGGCSCHHHH-----------------HHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHH
T ss_pred --cCCCEEEEEeeeehhhhHHHH-----------------HHHHHHHhcccccccCCeEEEEECCCCCCHHHHHHH
Confidence 368999999999975321000 2222222221 2234567999999999998864
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.63 E-value=8.1e-09 Score=82.61 Aligned_cols=82 Identities=18% Similarity=0.249 Sum_probs=59.6
Q ss_pred eEEEEeeeccceeeeecCCccccchhhhcccc----CCCEEEEeeeccccccccccCcccccHHHHHHHHHH---HHhCC
Q psy6623 93 VEVHFSFKNLNFKLFDVGGQRSERKKWIHCFE----DVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDS---ICNNK 165 (262)
Q Consensus 93 ~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~----~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~---i~~~~ 165 (262)
....+..++..+.+||++|++..+..|..++. .++.+++++|.++- ..++.+...++.. +++..
T Consensus 37 ~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~vd~~~~---------~~~~~~~~~~l~~~~~~~~~~ 107 (209)
T d1nrjb_ 37 PLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVD---------PKKLTTTAEFLVDILSITESS 107 (209)
T ss_dssp CEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSC---------TTCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccceEEEEecc---------cccHHHHHHHHHHHHHHHHHH
Confidence 44556678889999999999999999988764 45788999998752 2344444444433 33333
Q ss_pred CCCCCeEEEEeeCCchhh
Q psy6623 166 WFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~ 183 (262)
...++|++|++||+|+..
T Consensus 108 ~~~~~piiiv~NK~D~~~ 125 (209)
T d1nrjb_ 108 CENGIDILIACNKSELFT 125 (209)
T ss_dssp STTCCCEEEEEECTTSTT
T ss_pred HhccCCeEEEEEeecccc
Confidence 446899999999999865
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=98.51 E-value=1.3e-07 Score=74.13 Aligned_cols=114 Identities=12% Similarity=0.120 Sum_probs=67.3
Q ss_pred EEEeeeccceeeeecCCccccc------------hhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 95 VHFSFKNLNFKLFDVGGQRSER------------KKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 95 ~~~~~~~~~~~i~D~~Gq~~~r------------~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
..+..++..+.++|++|..... ..+..+.+.++++++|+|.+. ....+...++..+.
T Consensus 49 ~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dvii~v~d~~~-----------~~~~~~~~~~~~~~ 117 (186)
T d1mkya2 49 DEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQ-----------GITRQDQRMAGLME 117 (186)
T ss_dssp EEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTT-----------CCCHHHHHHHHHHH
T ss_pred eeeccCCceeeeeccCCccccccccccccccchhHHHHHHHhcCCEEEEeecccc-----------cchhhHHHHHHHHH
Confidence 3445566667777777765433 344445678999999999875 22233333333332
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcch-hHHHHHHhhh-ccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGE-RNRMQESLKL-FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~-~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
. .+.|+++++||+|+...+-.. + .+ .+.+.+.+.. ....++++||++|.||.++++.
T Consensus 118 ~----~~~~~i~v~nK~D~~~~~~~~--~------------~~~~~~~~~~~~~~~~~~i~~vSa~~g~gv~~L~~~ 176 (186)
T d1mkya2 118 R----RGRASVVVFNKWDLVVHREKR--Y------------DEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDA 176 (186)
T ss_dssp H----TTCEEEEEEECGGGSTTGGGC--H------------HHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHH
T ss_pred H----cCCceeeeccchhhhcchhhh--h------------hhHHHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHH
Confidence 2 368999999999986432111 0 01 2233333222 2234788999999999998853
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.44 E-value=1.4e-07 Score=72.08 Aligned_cols=107 Identities=18% Similarity=0.284 Sum_probs=67.4
Q ss_pred EEEEeeeccceeeeecCCccccc---------hhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 94 EVHFSFKNLNFKLFDVGGQRSER---------KKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 94 ~~~~~~~~~~~~i~D~~Gq~~~r---------~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
...+..++..+.+||++|..... ......+++++++|+|+|.++ .. ..+.......+
T Consensus 40 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~d~~~----------~~-~~~~~~~~~~~--- 105 (160)
T d1xzpa2 40 SEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASS----------PL-DEEDRKILERI--- 105 (160)
T ss_dssp CEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTS----------CC-CHHHHHHHHHH---
T ss_pred eEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHhCCEEEEEEeCCC----------Cc-chhhhhhhhhc---
Confidence 34456678889999999942211 112223678999999999987 22 22223333222
Q ss_pred CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 165 KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
...++++++||.|+..+. . ...+...+. ....++.+||++|+||+++++.
T Consensus 106 ---~~~~~i~~~~k~d~~~~~-~------------------~~~~~~~~~-~~~~~~~vSA~~g~gi~~L~~~ 155 (160)
T d1xzpa2 106 ---KNKRYLVVINKVDVVEKI-N------------------EEEIKNKLG-TDRHMVKISALKGEGLEKLEES 155 (160)
T ss_dssp ---TTSSEEEEEEECSSCCCC-C------------------HHHHHHHHT-CSTTEEEEEGGGTCCHHHHHHH
T ss_pred ---ccccceeeeeeccccchh-h------------------hHHHHHHhC-CCCcEEEEECCCCCCHHHHHHH
Confidence 357899999999986521 0 122222222 2344678999999999999863
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.38 E-value=1.1e-07 Score=76.46 Aligned_cols=108 Identities=14% Similarity=0.043 Sum_probs=69.3
Q ss_pred cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCch
Q psy6623 102 LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl 181 (262)
..+.+.|++|+..|-+........++++|+|+|..+ .-......+.+..+.. +.-.|++|+.||+|+
T Consensus 86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~----------gi~~~~t~e~~~~~~~---~~i~~iIV~vNK~Dl 152 (205)
T d2qn6a3 86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANE----------PFPQPQTREHFVALGI---IGVKNLIIVQNKVDV 152 (205)
T ss_dssp EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTS----------CSSCHHHHHHHHHHHH---TTCCCEEEEEECGGG
T ss_pred EEEEEeccchHHHHHhhhhcceeccccccccccccc----------cccchhHHHHHHHHHH---cCCceeeeccccCCC
Confidence 468899999999998877777889999999999876 1111222333333221 233589999999999
Q ss_pred hhhhhccCCCcccCCCCCCCCcchhHHHHHHhh---hccceeecccccccceeeeeehh
Q psy6623 182 FEEKIKKSPLTICFPEYAGKRPGERNRMQESLK---LFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 182 ~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~---~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
....-.... ...+.+... ...+.+.++||++|.||.++++.
T Consensus 153 ~~~~~~~~~---------------~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~ 196 (205)
T d2qn6a3 153 VSKEEALSQ---------------YRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEG 196 (205)
T ss_dssp SCHHHHHHH---------------HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHH
T ss_pred ccchHHHHH---------------HHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHH
Confidence 653211100 111111111 13466788999999999888753
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=98.32 E-value=1.3e-07 Score=75.17 Aligned_cols=108 Identities=13% Similarity=0.066 Sum_probs=67.8
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
...+.+.|++|+..|......-...++++++|+|..+ .-......+.+..+.. ....+++++.||+|
T Consensus 77 ~~~~~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~----------g~~~~~t~e~~~~~~~---~~~~~iiv~inK~D 143 (195)
T d1kk1a3 77 VRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANE----------PCPRPQTREHLMALQI---IGQKNIIIAQNKIE 143 (195)
T ss_dssp EEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTS----------CSSCHHHHHHHHHHHH---HTCCCEEEEEECGG
T ss_pred ceeEeeeccchhhhhhHHhhcccccccccccccchhh----------hhhhhhhHHHHHHHHH---hcCccceeeeeccc
Confidence 4568899999999998888777889999999999886 1111222222222221 12346888999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh---ccceeecccccccceeeeeeh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL---FDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~---~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+.+..-.... ..-+.+.+.. ..+.+.++||++|+||.++.+
T Consensus 144 ~~d~~~~~~~---------------~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~ 187 (195)
T d1kk1a3 144 LVDKEKALEN---------------YRQIKEFIEGTVAENAPIIPISALHGANIDVLVK 187 (195)
T ss_dssp GSCHHHHHHH---------------HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHH
T ss_pred chhhHHHHHH---------------HHHHHHHhccccCCCCeEEEEECCCCCCHHHHHH
Confidence 8653211000 1111111111 345678899999999988775
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=98.23 E-value=3.3e-06 Score=68.59 Aligned_cols=122 Identities=11% Similarity=-0.025 Sum_probs=73.8
Q ss_pred cccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 88 KTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 88 pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
.|+......+...+..+.+.|++|++.|-.....-..-+|++|+|+|..+ .-..+..+.+.-+.. +
T Consensus 75 ~ti~~~~~~~~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~-----------G~~~Qt~e~~~~~~~---~ 140 (222)
T d1zunb3 75 ITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARY-----------GVQTQTRRHSYIASL---L 140 (222)
T ss_dssp CCCCCEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTT-----------CSCHHHHHHHHHHHH---T
T ss_pred CCceeeEEEEeccceEEEEEeccchhhhhhhhccccccCceEEEEecccc-----------CcccchHHHHHHHHH---c
Confidence 33334445566677889999999999998888888889999999999876 222333333332221 1
Q ss_pred CCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcch-hHHHHHH-hhhccceeecccccccceeee
Q psy6623 168 TDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGE-RNRMQES-LKLFDSICNNKWFTDTSIILF 233 (262)
Q Consensus 168 ~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~-~~~i~~~-f~~~~~~~~~tsA~d~~~I~~ 233 (262)
.-..++++.||+|+.+..-...... ..+ ..++.+. |....+.+.++||.+|.||..
T Consensus 141 gv~~iiv~vNK~D~~~~~~~~~~~~----------~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~ 198 (222)
T d1zunb3 141 GIKHIVVAINKMDLNGFDERVFESI----------KADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN 198 (222)
T ss_dssp TCCEEEEEEECTTTTTSCHHHHHHH----------HHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred CCCEEEEEEEccccccccceehhhh----------HHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence 2235888999999864110000000 000 1111110 111456778899999999844
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=98.23 E-value=1e-06 Score=70.66 Aligned_cols=84 Identities=18% Similarity=0.268 Sum_probs=63.8
Q ss_pred eeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 85 ~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
.|.-|+......+..++.++++.||+|++.|-+....-.+.++++|+|+|.++ --..+..+.|.....
T Consensus 50 ~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~~~~~~~~~~aD~avlVvda~~-----------Gv~~qt~~~~~~~~~- 117 (204)
T d2c78a3 50 ARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAAD-----------GPMPQTREHILLARQ- 117 (204)
T ss_dssp HHTCCCSCEEEEEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTT-----------CCCHHHHHHHHHHHH-
T ss_pred cCCeEEEeeEEEEEeCCeEEEEEeCCCchhhHHHHHHHHHHCCEEEEEEECCC-----------CCcHHHHHHHHHHHH-
Confidence 34556666677888899999999999999998888888899999999999986 333444555544433
Q ss_pred CCCCCCe-EEEEeeCCchhh
Q psy6623 165 KWFTDTS-IILFLNKKDLFE 183 (262)
Q Consensus 165 ~~~~~~p-iil~~NK~Dl~~ 183 (262)
.++| ++++.||+|+.+
T Consensus 118 ---~gi~~iiv~iNK~D~~~ 134 (204)
T d2c78a3 118 ---VGVPYIVVFMNKVDMVD 134 (204)
T ss_dssp ---TTCCCEEEEEECGGGCC
T ss_pred ---cCCCeEEEEEEecccCC
Confidence 2454 788899999853
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=98.21 E-value=1.2e-06 Score=69.84 Aligned_cols=81 Identities=17% Similarity=0.226 Sum_probs=58.8
Q ss_pred ccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCC
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFT 168 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~ 168 (262)
|+-.....+...+..+++.|++|++.|-+-...-...++++|+|+|.++ .-..+..+.+..+.. +.
T Consensus 53 Ti~~~~~~~~~~~~~~~~iDtPGh~~f~~~~~~~~~~aD~allVVda~~-----------G~~~QT~~~~~~a~~---~~ 118 (196)
T d1d2ea3 53 TINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAAND-----------GPMPQTREHLLLARQ---IG 118 (196)
T ss_dssp EEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTT-----------CSCHHHHHHHHHHHH---TT
T ss_pred cCCcceEEEEeceeeEEeecCcchHHHHHHHHHHHhhcCeEEEEEEcCC-----------CCchhHHHHHHHHHH---hc
Confidence 3333445566678899999999999988877777889999999999986 222344444444432 23
Q ss_pred CCeEEEEeeCCchhh
Q psy6623 169 DTSIILFLNKKDLFE 183 (262)
Q Consensus 169 ~~piil~~NK~Dl~~ 183 (262)
..|+||+.||+|+..
T Consensus 119 ~~~iIv~iNK~D~~~ 133 (196)
T d1d2ea3 119 VEHVVVYVNKADAVQ 133 (196)
T ss_dssp CCCEEEEEECGGGCS
T ss_pred CCcEEEEEecccccc
Confidence 468999999999853
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=98.16 E-value=4.6e-07 Score=71.59 Aligned_cols=95 Identities=9% Similarity=0.071 Sum_probs=57.3
Q ss_pred hhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCC
Q psy6623 118 KWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPE 197 (262)
Q Consensus 118 ~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~ 197 (262)
.+.+.+.++++|++++|.+. .-.....++++.+.. .++|+++|+||+|+..+. .+...
T Consensus 98 ~~~~~~~~~~~vi~viD~~~-----------~~~~~~~~~~~~l~~----~~~piivv~NK~D~~~~~----~~~~~--- 155 (195)
T d1svia_ 98 TYITTREELKAVVQIVDLRH-----------APSNDDVQMYEFLKY----YGIPVIVIATKADKIPKG----KWDKH--- 155 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTS-----------CCCHHHHHHHHHHHH----TTCCEEEEEECGGGSCGG----GHHHH---
T ss_pred hhhccccchhhhhhhhhccc-----------ccccccccccccccc----ccCcceechhhccccCHH----HHHHH---
Confidence 44556678899999999875 111222333333332 368999999999985321 00000
Q ss_pred CCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehhhHHHhhc
Q psy6623 198 YAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 198 ~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
.+.+.+.+.. ....++.+||++|+||+++++ ++.+.+
T Consensus 156 --------~~~~~~~l~~~~~~~~~~~SA~~~~gi~el~~--~i~~~l 193 (195)
T d1svia_ 156 --------AKVVRQTLNIDPEDELILFSSETKKGKDEAWG--AIKKMI 193 (195)
T ss_dssp --------HHHHHHHHTCCTTSEEEECCTTTCTTHHHHHH--HHHHHH
T ss_pred --------HHHHHHHhcccCCCCEEEEeCCCCCCHHHHHH--HHHHHh
Confidence 2223333322 445678899999999999995 454443
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=98.14 E-value=2.1e-06 Score=71.96 Aligned_cols=91 Identities=16% Similarity=0.142 Sum_probs=70.2
Q ss_pred CCCcCccccceeeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHH
Q psy6623 74 EYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQE 153 (262)
Q Consensus 74 ~y~pt~~Dil~~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e 153 (262)
+|.|-. +.|.-|+......+.+++.++++.||+|+..|..-.....+-++++|+|+|.++ ---..
T Consensus 47 D~~~~E----~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~e~~~~l~~~D~avlVvda~~-----------Gv~~~ 111 (276)
T d2bv3a2 47 DFMEQE----RERGITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQ-----------GVEPQ 111 (276)
T ss_dssp ------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCSTTHHHHHHHCCEEEEEEETTT-----------SSCHH
T ss_pred eccHHH----HhcCCccccceeeeccCCeEEEEecCCchhhhHHHHHHHHHhhhheEEeccccC-----------Ccchh
Confidence 455544 345677888888999999999999999999999888888899999999999986 44456
Q ss_pred HHHHHHHHHhCCCCCCCeEEEEeeCCchhh
Q psy6623 154 SLKLFDSICNNKWFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 154 ~~~~~~~i~~~~~~~~~piil~~NK~Dl~~ 183 (262)
....|+.... .+.|.++|.||+|...
T Consensus 112 T~~~w~~a~~----~~lP~i~fINKmDr~~ 137 (276)
T d2bv3a2 112 SETVWRQAEK----YKVPRIAFANKMDKTG 137 (276)
T ss_dssp HHHHHHHHHT----TTCCEEEEEECTTSTT
T ss_pred HHHHHHHHHH----cCCCEEEEEecccccc
Confidence 6667766653 3799999999999854
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.08 E-value=1.6e-06 Score=71.51 Aligned_cols=135 Identities=12% Similarity=0.041 Sum_probs=64.2
Q ss_pred cccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 88 KTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 88 pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
.|+......+..++..+.+.|++|+..|-+....-..-++++|+|+|..+=-..-- ........+.+.+... +
T Consensus 88 ~ti~~~~~~~~~~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~-~~~~~QT~e~l~l~~~------~ 160 (245)
T d1r5ba3 88 KTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAG-FERGGQTREHAVLART------Q 160 (245)
T ss_dssp ------CCEEECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHT-TSTTCCHHHHHHHHHH------T
T ss_pred ccccccccccccccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCc-cccccchHHHHHHHHH------c
Confidence 44444445566677889999999999998888888888999999999975100000 0001122333322211 1
Q ss_pred CCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcch-hHHHHHHhh---hccceeecccccccceeeeeehh
Q psy6623 168 TDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGE-RNRMQESLK---LFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 168 ~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~-~~~i~~~f~---~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.-.+++++.||+|+.........+... ..+ ..++.+... ...+.+.++||++|+||.+++++
T Consensus 161 ~i~~iiv~iNKmD~~~~~~~e~~~~ei--------~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~s 226 (245)
T d1r5ba3 161 GINHLVVVINKMDEPSVQWSEERYKEC--------VDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDS 226 (245)
T ss_dssp TCSSEEEEEECTTSTTCSSCHHHHHHH--------HHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCT
T ss_pred CCCeEEEEEEcCCCCccchhHHHHHHH--------HHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchhc
Confidence 223588999999985421100000000 000 112221110 13466789999999999888754
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=98.04 E-value=2.5e-06 Score=69.24 Aligned_cols=127 Identities=17% Similarity=0.121 Sum_probs=72.4
Q ss_pred ccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCC
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFT 168 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~ 168 (262)
|+......++.++..+++.|++|+..|-.-...-.+-+|++|+|+|..+--..--+ .......+.+.... .+.
T Consensus 68 ti~~~~~~~~~~~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~-~~~~qt~e~l~~~~------~~~ 140 (224)
T d1jnya3 68 TINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGM-SVEGQTREHIILAK------TMG 140 (224)
T ss_dssp ------CEEECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHH-STTCHHHHHHHHHH------HTT
T ss_pred cccceEEEEecCCceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccc-cccchhHHHHHHHH------HhC
Confidence 34444455677888999999999999998888888899999999999861000000 00112222222221 123
Q ss_pred CCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcch--hHHHHHH-----hhhccceeecccccccceeeeee
Q psy6623 169 DTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGE--RNRMQES-----LKLFDSICNNKWFTDTSIILFLN 235 (262)
Q Consensus 169 ~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~--~~~i~~~-----f~~~~~~~~~tsA~d~~~I~~~f 235 (262)
..+++++.||+|+....-... ..+ .+.+... +....+.+.++||..|.||.+.-
T Consensus 141 ~~~iIv~iNK~D~~~~~~~~~-------------~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~~s 201 (224)
T d1jnya3 141 LDQLIVAVNKMDLTEPPYDEK-------------RYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 201 (224)
T ss_dssp CTTCEEEEECGGGSSSTTCHH-------------HHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred CCceEEEEEcccCCCccccHH-------------HHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccccc
Confidence 457889999999853110000 000 1112111 11145667789999999986543
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=97.96 E-value=7.5e-06 Score=68.19 Aligned_cols=83 Identities=12% Similarity=0.041 Sum_probs=68.1
Q ss_pred eeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 85 ~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
.|..|+......+.+++.+++++||+|+..|..-...-.+-++++|+|+|..+ --.......|+....
T Consensus 50 ~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e~~~al~~~D~avlvvda~~-----------Gv~~~t~~~~~~~~~- 117 (267)
T d2dy1a2 50 LHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEA-----------GVQVGTERAWTVAER- 117 (267)
T ss_dssp HTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTT-----------CSCHHHHHHHHHHHH-
T ss_pred HhCCeEEeecccccccccceeEEccCchhhhhhhhhhhhcccCceEEEeeccC-----------CccchhHHHHHhhhh-
Confidence 34567777778889999999999999999998888888899999999999886 445566666666654
Q ss_pred CCCCCCeEEEEeeCCchh
Q psy6623 165 KWFTDTSIILFLNKKDLF 182 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~ 182 (262)
.++|.++|.||+|..
T Consensus 118 ---~~~p~~i~iNk~D~~ 132 (267)
T d2dy1a2 118 ---LGLPRMVVVTKLDKG 132 (267)
T ss_dssp ---TTCCEEEEEECGGGC
T ss_pred ---ccccccccccccccc
Confidence 368999999999973
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.89 E-value=1.2e-05 Score=65.80 Aligned_cols=124 Identities=14% Similarity=0.012 Sum_probs=76.5
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHH-------HHHHHH
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQ-------ESLKLF 158 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~-------e~~~~~ 158 (262)
+--|+......|...+.++++.|++|+..|-+-+..-..-++++|+|+|.++ ..++ +..+.+
T Consensus 68 rGiTi~~~~~~~~~~~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~-----------G~~e~g~~~~~QT~eh~ 136 (239)
T d1f60a3 68 RGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGV-----------GEFEAGISKDGQTREHA 136 (239)
T ss_dssp TTCCCSCSCEEEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSH-----------HHHHHHTCTTSHHHHHH
T ss_pred ceeccccceeEeccCCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCC-----------CccccccCchHhHHHHH
Confidence 3456666677788889999999999999999888888899999999999875 1111 222222
Q ss_pred HHHHhCCCCCCC-eEEEEeeCCchhhhhhccCCCcccCCCCCCCCcch-hHHHHH-Hhhhccceeecccccccceeeee
Q psy6623 159 DSICNNKWFTDT-SIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGE-RNRMQE-SLKLFDSICNNKWFTDTSIILFL 234 (262)
Q Consensus 159 ~~i~~~~~~~~~-piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~-~~~i~~-~f~~~~~~~~~tsA~d~~~I~~~ 234 (262)
.-.. . -++ +++++.||+|+.+..-... .. ...+ ..++.. .+....+.+...||..|.|+-+.
T Consensus 137 ~~~~---~-~gv~~iiv~iNKmD~~~~d~~~~--~~--------~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~~ 201 (239)
T d1f60a3 137 LLAF---T-LGVRQLIVAVNKMDSVKWDESRF--QE--------IVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 201 (239)
T ss_dssp HHHH---H-TTCCEEEEEEECGGGGTTCHHHH--HH--------HHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred HHHH---H-cCCCeEEEEEECCCCCCCCHHHH--HH--------HHHHHHHHHHhcCCCCCcEEEEEEEccCCCcceec
Confidence 2221 1 234 5889999999864110000 00 0000 112211 11113466678999999988554
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.59 E-value=6.4e-05 Score=64.53 Aligned_cols=69 Identities=12% Similarity=0.088 Sum_probs=57.1
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
+..+++.||+|+..|..-.....+-++++|+|||..+ .-.......++.... .+.|++||.||+|
T Consensus 95 ~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~e-----------Gv~~qT~~~~~~a~~----~~~p~i~viNKiD 159 (341)
T d1n0ua2 95 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIE-----------GVCVQTETVLRQALG----ERIKPVVVINKVD 159 (341)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTT-----------BSCHHHHHHHHHHHH----TTCEEEEEEECHH
T ss_pred ceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEeccc-----------CcchhHHHHHHHHHH----cCCCeEEEEECcc
Confidence 4568999999999998888888899999999999986 455666677776664 3689999999999
Q ss_pred hhhh
Q psy6623 181 LFEE 184 (262)
Q Consensus 181 l~~~ 184 (262)
....
T Consensus 160 r~~~ 163 (341)
T d1n0ua2 160 RALL 163 (341)
T ss_dssp HHHH
T ss_pred cccc
Confidence 8654
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.32 E-value=0.00046 Score=52.52 Aligned_cols=114 Identities=15% Similarity=0.104 Sum_probs=62.6
Q ss_pred eccceeeeecCCcccc---------chhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCC
Q psy6623 100 KNLNFKLFDVGGQRSE---------RKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDT 170 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~---------r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~ 170 (262)
+...+..||+.|.... ......+...++.++++.|.++ . ......++..+.. ...
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~----------~--~~~~~~~~~~l~~----~~~ 114 (179)
T d1egaa1 51 GAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR----------W--TPDDEMVLNKLRE----GKA 114 (179)
T ss_dssp TTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC----------C--CHHHHHHHHHHHS----SSS
T ss_pred CCceeEeecCCCceecchhhhhhhhhhccccchhhcceeEEEEecCc----------c--chhHHHHHHHhhh----ccC
Confidence 4455667787775322 1112223456778888888765 1 1222222333332 356
Q ss_pred eEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhccCC
Q psy6623 171 SIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 247 (262)
Q Consensus 171 piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~~~ 247 (262)
|+++++||+|....+-..... ...+.++. ....++++||++|+||+++++ .+.+.+..+
T Consensus 115 ~~i~v~~k~d~~~~~~~~~~~--------------~~~~~~~~--~~~~~~~vSA~~g~gi~~L~~--~i~~~lpe~ 173 (179)
T d1egaa1 115 PVILAVNKVDNVQEKADLLPH--------------LQFLASQM--NFLDIVPISAETGLNVDTIAA--IVRKHLPEA 173 (179)
T ss_dssp CEEEEEESTTTCCCHHHHHHH--------------HHHHHTTS--CCSEEEECCTTTTTTHHHHHH--HHHTTCCBC
T ss_pred ceeeeeeeeeccchhhhhhhH--------------hhhhhhhc--CCCCEEEEeCcCCCCHHHHHH--HHHHhCCCC
Confidence 889999999986532110000 11111111 224578899999999999984 466666443
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=96.36 E-value=0.0014 Score=53.94 Aligned_cols=82 Identities=10% Similarity=0.030 Sum_probs=50.8
Q ss_pred hccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCC
Q psy6623 120 IHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYA 199 (262)
Q Consensus 120 ~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~ 199 (262)
....+.+|.||+|+|.-+ .-+.. -..+..++ .+.|++||+||+||.....
T Consensus 10 ~~~i~~~DvIl~V~DaR~----------P~ss~--~~~l~~~~-----~~Kp~IlVlNK~DLv~~~~------------- 59 (273)
T d1puja_ 10 TEKLKLIDIVYELVDARI----------PMSSR--NPMIEDIL-----KNKPRIMLLNKADKADAAV------------- 59 (273)
T ss_dssp HHHGGGCSEEEEEEETTS----------TTTTS--CHHHHHHC-----SSSCEEEEEECGGGSCHHH-------------
T ss_pred HHHHHhCCEEEEEEECCC----------CCCCC--CHHHHHHH-----cCCCeEEEEECccCCchHH-------------
Confidence 345789999999999765 11111 12234444 3579999999999965321
Q ss_pred CCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 200 GKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 200 g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+...+.|........++||+++.++..+.+.
T Consensus 60 ------~~~w~~~f~~~~~~~i~isa~~~~~~~~~~~~ 91 (273)
T d1puja_ 60 ------TQQWKEHFENQGIRSLSINSVNGQGLNQIVPA 91 (273)
T ss_dssp ------HHHHHHHHHTTTCCEEECCTTTCTTGGGHHHH
T ss_pred ------HHHHHHHHHhcCCccceeecccCCCccccchh
Confidence 12223334444455667888888887766653
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.31 E-value=0.0021 Score=50.99 Aligned_cols=129 Identities=13% Similarity=-0.044 Sum_probs=62.0
Q ss_pred cceeeeecCCccccchhh--hc-c--ccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEe
Q psy6623 102 LNFKLFDVGGQRSERKKW--IH-C--FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFL 176 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~~w--~~-~--f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~ 176 (262)
..+.+.|++|+...-... .. . ....+++++++|...-.+ ... ..+..+........ -..|.++++
T Consensus 95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~-------~~~-~~~~~l~~~~~~~~--~~~~~ivvi 164 (244)
T d1yrba1 95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKK-------PND-YCFVRFFALLIDLR--LGATTIPAL 164 (244)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCS-------HHH-HHHHHHHHHHHHHH--HTSCEEEEE
T ss_pred cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccC-------chh-HhhHHHHHHHHHHH--hCCCceeee
Confidence 457789999997642211 11 1 124568899999875221 111 11111111111111 257899999
Q ss_pred eCCchhhhhhccC--CCcccCCCC----CCCCcchhHHHHHHh---hh--ccceeecccccccceeeeeehhhHHHh
Q psy6623 177 NKKDLFEEKIKKS--PLTICFPEY----AGKRPGERNRMQESL---KL--FDSICNNKWFTDTSIILFLNKKDLFEE 242 (262)
Q Consensus 177 NK~Dl~~~kl~~~--~l~~~fp~~----~g~~~~~~~~i~~~f---~~--~~~~~~~tsA~d~~~I~~~f~~~lL~~ 242 (262)
||+|+....-... ......... .........+..... .+ ..+.++++||++|+||.++++ +|.+
T Consensus 165 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~--~l~e 239 (244)
T d1yrba1 165 NKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLET--LAYE 239 (244)
T ss_dssp CCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHH--HHHH
T ss_pred eccccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHH--HHHH
Confidence 9999875311000 000000000 000000011111111 11 345678899999999999884 4544
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.10 E-value=0.0025 Score=51.26 Aligned_cols=85 Identities=13% Similarity=0.090 Sum_probs=49.8
Q ss_pred cCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCc
Q psy6623 124 EDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRP 203 (262)
Q Consensus 124 ~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~ 203 (262)
.|+|.+++|+++.+.+ .+...+ +.+-.++. ..+++.+|++||+||..+.-....
T Consensus 9 ANiD~~~iV~s~~~P~------~~~~~i----dR~Lv~a~---~~~i~pvIvlnK~DL~~~~~~~~~------------- 62 (231)
T d1t9ha2 9 CNVDQAVLVFSAVQPS------FSTALL----DRFLVLVE---ANDIQPIICITKMDLIEDQDTEDT------------- 62 (231)
T ss_dssp ECCCEEEEEEESTTTT------CCHHHH----HHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHH-------------
T ss_pred cccCEEEEEEECCCCC------CCHHHH----HHHHHHHH---HcCCCEEEEEecccccccHHHHHH-------------
Confidence 6899999998876511 011222 22222222 357899999999999642100000
Q ss_pred chhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 204 GERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 204 ~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
...+.+.+....+.++.+||+++.+++++-+
T Consensus 63 --~~~~~~~y~~~g~~v~~~Sa~~~~gl~~L~~ 93 (231)
T d1t9ha2 63 --IQAYAEDYRNIGYDVYLTSSKDQDSLADIIP 93 (231)
T ss_dssp --HHHHHHHHHHHTCCEEECCHHHHTTCTTTGG
T ss_pred --HHHHHHHHhhccccceeeecCChhHHHHHHH
Confidence 1222233333456788999999999987764
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.89 E-value=0.0052 Score=46.28 Aligned_cols=68 Identities=13% Similarity=0.145 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh--ccceeeccccccc
Q psy6623 151 MQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL--FDSICNNKWFTDT 228 (262)
Q Consensus 151 l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~--~~~~~~~tsA~d~ 228 (262)
.......+..... ...++++++||+|+....-... ..+.+.+.+.. ....++.+||++|
T Consensus 113 ~~~~~~~~~~~~~----~~~~~~~v~~k~D~~~~~~~~~---------------~~~~~~~~l~~~~~~~~~i~vSA~~g 173 (188)
T d1puia_ 113 KDLDQQMIEWAVD----SNIAVLVLLTKADKLASGARKA---------------QLNMVREAVLAFNGDVQVETFSSLKK 173 (188)
T ss_dssp CHHHHHHHHHHHH----TTCCEEEEEECGGGSCHHHHHH---------------HHHHHHHHHGGGCSCEEEEECBTTTT
T ss_pred hhHHHHHHHHhhh----ccccccchhhhhhccCHHHHHH---------------HHHHHHHHHHhhCCCCcEEEEeCCCC
Confidence 3444555555543 2578999999999864210000 02233333322 2345788999999
Q ss_pred ceeeeeehh
Q psy6623 229 SIILFLNKK 237 (262)
Q Consensus 229 ~~I~~~f~~ 237 (262)
.||+++++.
T Consensus 174 ~Gid~L~~~ 182 (188)
T d1puia_ 174 QGVDKLRQK 182 (188)
T ss_dssp BSHHHHHHH
T ss_pred CCHHHHHHH
Confidence 999998863
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.83 E-value=0.0044 Score=49.50 Aligned_cols=82 Identities=16% Similarity=0.108 Sum_probs=46.5
Q ss_pred ccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCC
Q psy6623 123 FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKR 202 (262)
Q Consensus 123 f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~ 202 (262)
..|+|.+++|+++.+-+ .+...++ .|--++ +..+++.+|++||+||..+..
T Consensus 8 vANiD~vliV~s~~~P~------~~~~~ld----R~Lv~a---~~~~i~pvIvlnK~DL~~~~~---------------- 58 (225)
T d1u0la2 8 VANVDQVILVVTVKMPE------TSTYIID----KFLVLA---EKNELETVMVINKMDLYDEDD---------------- 58 (225)
T ss_dssp EESCCEEEEEECSSTTC------CCHHHHH----HHHHHH---HHTTCEEEEEECCGGGCCHHH----------------
T ss_pred cccCCEEEEEEeCCCCC------CCHHHHH----HHHHHH---HHcCCCEEEEEeCcccCCHHH----------------
Confidence 36899999999876410 0112222 222222 224789999999999965310
Q ss_pred cchhHHHHHHhh--hccceeecccccccceeeeeeh
Q psy6623 203 PGERNRMQESLK--LFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 203 ~~~~~~i~~~f~--~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
...+...+. .....++.+||+++.+++.+-+
T Consensus 59 ---~~~~~~~~~~~~~~~~v~~vSa~~~~g~~~L~~ 91 (225)
T d1u0la2 59 ---LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKE 91 (225)
T ss_dssp ---HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHH
T ss_pred ---HHHHHHhhcccccceeEEEeccccchhHhhHHH
Confidence 111111111 1224567899999999877653
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.00 E-value=0.029 Score=45.28 Aligned_cols=86 Identities=12% Similarity=0.067 Sum_probs=52.2
Q ss_pred ccceeEEEEeeeccceeeeecCCccccc-------hhhhc--cccCCCEEEEeeeccccccccccCcccccHHHHHHHHH
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRSER-------KKWIH--CFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFD 159 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~~r-------~~w~~--~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~ 159 (262)
|..........++..+.++||+|-.... ..... .-.+.++++||++++... -...-...+..+.
T Consensus 67 T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~~~~~~~~il~v~~~~~~r-------~~~~~~~~l~~l~ 139 (257)
T d1h65a_ 67 GPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYR-------VDNLDKLVAKAIT 139 (257)
T ss_dssp CSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCC-------CCHHHHHHHHHHH
T ss_pred ceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCCC-------CCHHHHHHHHHHH
Confidence 3344555566788899999999953211 11111 224678999998877510 0122344556666
Q ss_pred HHHhCCCCCCCeEEEEeeCCchhh
Q psy6623 160 SICNNKWFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 160 ~i~~~~~~~~~piil~~NK~Dl~~ 183 (262)
.++.... -.+++|++||+|...
T Consensus 140 ~~fg~~~--~~~~ivv~t~~D~~~ 161 (257)
T d1h65a_ 140 DSFGKGI--WNKAIVALTHAQFSP 161 (257)
T ss_dssp HHHCGGG--GGGEEEEEECCSCCC
T ss_pred HHcchhh--hhCEEEEEECcccCC
Confidence 6654322 247899999999864
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.47 E-value=0.07 Score=45.83 Aligned_cols=66 Identities=15% Similarity=0.064 Sum_probs=39.8
Q ss_pred eccceeeeecCCccccchhhh-----ccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6623 100 KNLNFKLFDVGGQRSERKKWI-----HCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIIL 174 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~-----~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil 174 (262)
++-.+.+|||+|-......-. .-+..++.+|++.|..- ...-..+++.+.. .+.|+++
T Consensus 105 ~~~~~~l~DtPG~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~-------------~~~d~~l~~~l~~----~~k~~~~ 167 (400)
T d1tq4a_ 105 NIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRF-------------KKNDIDIAKAISM----MKKEFYF 167 (400)
T ss_dssp SCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCC-------------CHHHHHHHHHHHH----TTCEEEE
T ss_pred CCCeEEEEeCCCcccccccHHHHHHHhhhhcceEEEEecCCCC-------------CHHHHHHHHHHHH----cCCCEEE
Confidence 345688999999754332222 22456777777765321 1222344444433 2689999
Q ss_pred EeeCCchh
Q psy6623 175 FLNKKDLF 182 (262)
Q Consensus 175 ~~NK~Dl~ 182 (262)
|+||+|..
T Consensus 168 V~nK~D~~ 175 (400)
T d1tq4a_ 168 VRTKVDSD 175 (400)
T ss_dssp EECCHHHH
T ss_pred EEeCcccc
Confidence 99999974
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.23 E-value=1.2 Score=35.57 Aligned_cols=70 Identities=21% Similarity=0.313 Sum_probs=42.6
Q ss_pred cceeeeecCCcccc-------------chhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCC
Q psy6623 102 LNFKLFDVGGQRSE-------------RKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFT 168 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~-------------r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~ 168 (262)
..+.++|++|--.. ..++..|....+.+|+++..+.. .-...+...+.+.+- + .
T Consensus 125 ~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~---------~~~~~~~~~~~~~~~--~--~ 191 (299)
T d2akab1 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS---------DLANSDALKIAKEVD--P--Q 191 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSS---------CGGGCHHHHHHHHHC--T--T
T ss_pred CCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeeccccc---------chhhhHHHHHHHHhC--c--C
Confidence 35789999995321 24566677788876655544331 122234455555442 1 2
Q ss_pred CCeEEEEeeCCchhhh
Q psy6623 169 DTSIILFLNKKDLFEE 184 (262)
Q Consensus 169 ~~piil~~NK~Dl~~~ 184 (262)
..++++|+||+|...+
T Consensus 192 ~~r~i~Vltk~D~~~~ 207 (299)
T d2akab1 192 GQRTIGVITKLDLMDE 207 (299)
T ss_dssp CSSEEEEEECGGGSCT
T ss_pred CCceeeEEeccccccc
Confidence 4578899999998753
|