Psyllid ID: psy6649

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240--
Protein Sequence
MTRPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMINGEEQEDMGEEQKQN
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccHHHHHccHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccHHHHEccHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHccEEHcHHHHHHHHHHHHHHccccccEEEEcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
MTRPRRYELGLILLLVHILHlgadtippatLGLVFLQSMVYLNIfrkpwstldvcisadavIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITndtselshcAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLvpnasfkghLSGILVGltytdtpigwgLDYVVDKCQEMingeeqedmgeeqkqn
Flexible Loop (DISEMBL)
MTRPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMINgeeqedmgeeqkqn
Low Complexity Region (SEG)
MTRPRRYElglilllvhilhlgADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMINGEEQEDMGEEQKQN
Disordered region (IsUnstruct)
******YELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEM****************
Disordered Region (DISOPRED)
**********LILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVD*********************
Disordered Region (DISEMBL)
MTRPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMINGE************
Disordered Region (DISPRO)
*****RYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMINGEEQEDM*******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTRPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMINGEEQEDMGEEQKQN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	242	2.2.26 [Sep-21-2011]
Q4V8F3	316	Rhomboid-related protein	yes	N/A	0.880	0.674	0.400	4e-40
Q8BHC7	315	Rhomboid-related protein	yes	N/A	0.880	0.676	0.396	4e-40
Q8TEB9	315	Rhomboid-related protein	yes	N/A	0.884	0.679	0.393	1e-38
Q5RBS4	318	Rhomboid-related protein	yes	N/A	0.884	0.672	0.389	1e-37
Q8RXW0	334	Uncharacterized protein A	yes	N/A	0.743	0.538	0.389	2e-23
Q8LB17	403	Uncharacterized protein A	no	N/A	0.756	0.454	0.324	4e-18
Q6CDV6	297	Rhomboid protein 2 OS=Yar	yes	N/A	0.690	0.562	0.266	5e-05
O74926	251	Rhomboid protein 2 OS=Sch	yes	N/A	0.615	0.593	0.280	0.0002
Q12270	262	Rhomboid protein 2 OS=Sac	yes	N/A	0.764	0.706	0.248	0.0003

>sp|Q4V8F3|RHBL4_RAT Rhomboid-related protein 4 OS=Rattus norvegicus GN=Rhbdd1 PE=2 SV=1

 Score =  164 bits (416), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 89/222 (40%), Positives = 123/222 (55%), Gaps = 9/222 (4%)

Query: 3   RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTL-DVCISADAV 61
           R R  + GL+LLL  + H+G + IPP TL  + +    +LN    PW  L   CIS +  
Sbjct: 4   RTRGIDTGLLLLLSQVFHIGINNIPPVTLATLAVNVWFFLN----PWKPLYHSCISVEKC 59

Query: 62  IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
            QQ D++RL+LS   HGDD HLY+NMVS++ KG +LEK  G   F  ++   ++ T + Y
Sbjct: 60  YQQNDWQRLLLSPVHHGDDWHLYFNMVSMLWKGVKLEKRLGSRWFAYIIATFSLLTGVVY 119

Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
           +LL +    + N      +CA+GFS VLFA+K +     P  +  IL   V   +A W E
Sbjct: 120 LLLQFASAELMNQPDFKRNCAVGFSGVLFALKVLSNHYCPGGFVNILGFPVPNRFACWAE 179

Query: 182 LIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKC 223
           L  I+   P  SF GHL+GILVGL YT  P    L  ++D C
Sbjct: 180 LAAIHFCTPGTSFAGHLAGILVGLMYTQGP----LKKIMDAC 217

Rattus norvegicus (taxid: 10116)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: -

>sp|Q8BHC7|RHBL4_MOUSE Rhomboid-related protein 4 OS=Mus musculus GN=Rhbdd1 PE=1 SV=1

 Score =  164 bits (416), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 88/222 (39%), Positives = 124/222 (55%), Gaps = 9/222 (4%)

Query: 3   RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTL-DVCISADAV 61
           R R    GL+LLL  +  +G + IPP TL  + +    +LN    PW  L   CIS +  
Sbjct: 4   RTRGINTGLLLLLSQVFQIGINNIPPVTLATLAVNVWFFLN----PWKPLYHSCISVEKC 59

Query: 62  IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
            QQ+D++RL+LS   HGDD HLY+NMVS++ KG +LE+  G   F  ++   ++ T + Y
Sbjct: 60  YQQKDWQRLLLSPLHHGDDWHLYFNMVSMLWKGVKLERRLGSRWFAYVIATFSLLTGVVY 119

Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
           +LL + V  + N      +CA+GFS VLFA+K +     P  +  IL   V   +A W E
Sbjct: 120 LLLQFTVAELLNQPDFKRNCAVGFSGVLFALKVLSNHYCPGGFVNILGFPVPNRFACWAE 179

Query: 182 LIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKC 223
           L+ I+   P  SF GHL+GILVGL YT  P    L  ++D C
Sbjct: 180 LVAIHFCTPGTSFAGHLAGILVGLMYTQGP----LKKIMDTC 217

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q8TEB9|RHBL4_HUMAN Rhomboid-related protein 4 OS=Homo sapiens GN=RHBDD1 PE=1 SV=1

 Score =  159 bits (403), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 87/221 (39%), Positives = 123/221 (55%), Gaps = 7/221 (3%)

Query: 3   RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
           R R    GLILLL  I H+G + IPP TL  + L    +LN  +  +S+   C+S +   
Sbjct: 4   RSRGINTGLILLLSQIFHVGINNIPPVTLATLALNIWFFLNPQKPLYSS---CLSVEKCY 60

Query: 63  QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
           QQ+D++RL+LS   H DD HLY+NM S++ KG  LE+  G   F  ++   +V T + Y+
Sbjct: 61  QQKDWQRLLLSPLHHADDWHLYFNMASMLWKGINLERRLGSRWFAYVITAFSVLTGVVYL 120

Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
           LL + V    ++      CA+GFS VLFA+K +     P  +  IL   V   +A W EL
Sbjct: 121 LLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVLNNHYCPGGFVNILGFPVPNRFACWVEL 180

Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKC 223
           + I+L  P  SF GHL+GILVGL YT  P    L  +++ C
Sbjct: 181 VAIHLFSPGTSFAGHLAGILVGLMYTQGP----LKKIMEAC 217

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q5RBS4|RHBL4_PONAB Rhomboid-related protein 4 OS=Pongo abelii GN=RHBDD1 PE=2 SV=1

 Score =  156 bits (394), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 86/221 (38%), Positives = 121/221 (54%), Gaps = 7/221 (3%)

Query: 3   RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
           R R    GLILLL  I H+G + IPP TL  + L    +LN  +  +S+   C+S +   
Sbjct: 4   RSRGINTGLILLLSQIFHVGINNIPPVTLATLALNIWFFLNPQKPLYSS---CLSVEKCY 60

Query: 63  QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
           QQRD++RL+LS   H DD HLY+N  S++ KG  LE+  G   F  ++   +V T + Y+
Sbjct: 61  QQRDWQRLLLSPLHHADDWHLYFNTASVLWKGINLERRLGSRWFAYVITTFSVLTGVVYL 120

Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
           LL + V    ++      CA+GFS VLFA+K +     P  +  IL   V   +A W EL
Sbjct: 121 LLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVLNNHYCPGGFVNILGFPVPNRFACWVEL 180

Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKC 223
           + I+L  P  SF GH +GILVGL YT  P    L  +++ C
Sbjct: 181 VAIHLFSPGTSFAGHQAGILVGLMYTQGP----LKKIMEAC 217

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q8RXW0|Y3761_ARATH Uncharacterized protein At3g17611 OS=Arabidopsis thaliana GN=At3g17611 PE=2 SV=1

 Score =  109 bits (272), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/185 (38%), Positives = 102/185 (55%), Gaps = 5/185 (2%)

Query: 27  PPATLGLVFLQSMVYLN-IFRKP--WSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHL 83
           PP T  L+   ++VYL   F  P      +V  +   + + +D KRL LSAF H ++ HL
Sbjct: 33  PPVTASLLAANTLVYLRPAFIDPVIPHISEVWFNPHLIFKHKDLKRLFLSAFYHVNEPHL 92

Query: 84  YYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFT-SLYYILLAYIVFYITNDTSELSHCA 142
            YNM+SL+ KG +LE   G  +F S+V  L   +  +  +L   ++     D +  +  A
Sbjct: 93  VYNMMSLLWKGIKLETSMGSSEFASMVFTLIGMSQGVTLLLAKSLLLLFDYDRAYYNEYA 152

Query: 143 IGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGIL 202
           +GFS VLFAMK +L   Q + Y  +  I V   YA W ELI++ + VPNASF GHL GIL
Sbjct: 153 VGFSGVLFAMKVVLNS-QAEDYSSVYGILVPTKYAAWAELILVQMFVPNASFLGHLGGIL 211

Query: 203 VGLTY 207
            G+ Y
Sbjct: 212 AGIIY 216

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LB17|Y3846_ARATH Uncharacterized protein At3g58460 OS=Arabidopsis thaliana GN=At3g58460 PE=1 SV=2

 Score = 92.0 bits (227), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 98/191 (51%), Gaps = 8/191 (4%)

Query: 24  DTIPPATLGLVFLQSMVYLNIFRKPWSTL-DVCISADAVIQQRDYKRLILSAFEHGDDMH 82
           + IP  T  +V +  ++YL      + T  +VC    A+I +    R   +   HG  +H
Sbjct: 20  NAIPFLTSSVVVVCGVIYLICLLTGYDTFYEVCFLPSAIISRFQVYRFYTAIIFHGSLLH 79

Query: 83  LYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSH-- 140
           + +NM++L+  G +LE+I G  + L L + L    ++ ++L+A +  Y  N   +  H  
Sbjct: 80  VLFNMMALVPMGSELERIMGSVRLLYLTVLLATTNAVLHLLIASLAGY--NPFYQYDHLM 137

Query: 141 --CAIGFSAVLFAMKTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYLLVPNASFKGH 197
             CAIGFS +LF+M  I T L     + +  + NV A   PW  LI+  LL+ N S  GH
Sbjct: 138 NECAIGFSGILFSMIVIETSLSGVTSRSVFGLFNVPAKLYPWILLIVFQLLMTNVSLLGH 197

Query: 198 LSGILVGLTYT 208
           L GIL G +Y+
Sbjct: 198 LCGILSGFSYS 208

Arabidopsis thaliana (taxid: 3702)

>sp|Q6CDV6|RBD2_YARLI Rhomboid protein 2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=RBD2 PE=3 SV=1

 Score = 48.5 bits (114), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 17/184 (9%)

Query: 27  PPA-TLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYY 85
           PPA +LGL    ++++L   R  W   D+ + + A +   +  R+      H    HL  
Sbjct: 17  PPALSLGLPIFLTVIFLLSQRYVWIEDDLELRSTA-LTNFELNRISFYPLVHATWFHLLL 75

Query: 86  NMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCA--- 142
           N+V+L     Q E++ G  +   ++  L V T++ + LL+   F    D + L   A   
Sbjct: 76  NLVALQPIVSQFERVNGTVRTGIVLNILAVVTAIPWCLLSIGFF---PDEAVLGSSAWIF 132

Query: 143 --IGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSG 200
             +G+ A+  + K   T+L P       N+ V     P   L++I +++P++SF GHL G
Sbjct: 133 SFMGYWAIRESSKQPTTQLAP-------NLVVPTWLLPIIYLVVIAIVIPSSSFIGHLLG 185

Query: 201 ILVG 204
           ++ G
Sbjct: 186 LIAG 189

Probable serine protease.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|O74926|RBD2_SCHPO Rhomboid protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rbd2 PE=3 SV=2

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 8/157 (5%)

Query: 50  STLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYG-WGKFLS 108
           ST  + +S   ++Q+R    +I     H   +H+ +N VSL+    Q EK  G     L 
Sbjct: 39  STGVLSLSWIGLLQKRQLYEIITYVTLHLSMLHIVFNFVSLLPAMSQFEKKQGTLACILV 98

Query: 109 LVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQIL 168
            VI  T+F  + ++++ +  F++  D   ++    G S   FA  +      P       
Sbjct: 99  TVIPYTLFPGIMHLIVYH--FFLRKDYVSIA----GLSGWAFAFISASCVHSPQRLISFF 152

Query: 169 NI-NVKAIYAPWFELIIIYLLVPNASFKGHLSGILVG 204
           N+ ++ A   P   LI+  +LVP ASF GH SG ++G
Sbjct: 153 NLFSIPAYCFPIIYLIMTTILVPKASFIGHASGAVMG 189

Probable serine protease.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q12270|RBD2_YEAST Rhomboid protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RBD2 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 103/221 (46%), Gaps = 36/221 (16%)

Query: 27  PPATL--GLVFLQSMVYLNIF----RKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDD 80
           PPA L  GLV   + +YL  F    R+     D+ ++ +++ + +   RL L    H   
Sbjct: 13  PPAALTTGLVVFLTAIYLLSFIFALRE-----DLSLAPESLFKLQ-MSRLSLYPLIHLSL 66

Query: 81  MHLYYNMVSLILKGRQLEKIYGW---GKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSE 137
            HL +N++++       E+ +G    G FL+L     +F  + Y LL  +++        
Sbjct: 67  PHLLFNVLAIWAPLNLFEETHGTVYTGVFLNLS---ALFAGILYCLLGKLLY-----PEA 118

Query: 138 LSHCAIGFSAVLFAMKTIL-TRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKG 196
           L   A G+   LFA  +   ++++P       + ++  +Y P   L+ I +++P +SF G
Sbjct: 119 LVAGASGWCFTLFAYYSFKESQIRPRTRIFRTDYSIPTLYTPLVLLVAIAVVIPGSSFWG 178

Query: 197 HLSGILVG--LTYTD------TPIGWGLDYVVDKCQEMING 229
           H  G+ VG  + Y +      TP GW    ++ K ++ ++G
Sbjct: 179 HFFGLCVGYAIGYKESWFNKITPPGW----IITKIEKSLDG 215

Probable serine protease.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
242015304	287	conserved hypothetical protein [Pediculu	0.867	0.731	0.485	2e-52
242006593	236	conserved hypothetical protein [Pediculu	0.855	0.877	0.450	8e-48
322802448	247	hypothetical protein SINV_10941 [Solenop	0.909	0.890	0.464	2e-47
332024419	246	Rhomboid domain-containing protein 1 [Ac	0.942	0.926	0.445	1e-45
383847955	247	PREDICTED: rhomboid domain-containing pr	0.888	0.870	0.451	2e-44
321459244	312	hypothetical protein DAPPUDRAFT_300486 [	0.896	0.695	0.435	3e-44
197304727	246	rhomboid domain containing 1 [Nasonia vi	0.904	0.890	0.434	3e-44
307213224	247	Rhomboid domain-containing protein 1 [Ha	0.900	0.882	0.440	5e-44
340725934	247	PREDICTED: rhomboid domain-containing pr	0.888	0.870	0.455	3e-43
350397339	247	PREDICTED: rhomboid domain-containing pr	0.888	0.870	0.451	1e-42

>gi|242015304|ref|XP_002428304.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212512889|gb|EEB15566.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 102/210 (48%), Positives = 140/210 (66%)

Query: 8   ELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDY 67
           ELGLILL   +L  G   IPP TLG +  Q+++Y+ I   PW   +VCIS +++I  +D+
Sbjct: 11  ELGLILLFNELLIFGMKNIPPVTLGAILGQTLLYMGIINVPWEKEEVCISGNSIINDKDW 70

Query: 68  KRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYI 127
           KRL LSA EHGDDMHLY+NM S ++KGR LE  YG   F  ++ FLT+ TSL Y++LA+I
Sbjct: 71  KRLFLSAVEHGDDMHLYFNMASFLIKGRSLEARYGSKNFAIILTFLTIVTSLMYVILAFI 130

Query: 128 VFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYL 187
           +  +   TS +  CAIGFS V+FA+K + T  +P     +L +++   YA W ELIII++
Sbjct: 131 MSNVMEATSYMDSCAIGFSGVIFALKVLTTHEEPYIRAMLLGVDIPGKYAAWVELIIIHM 190

Query: 188 LVPNASFKGHLSGILVGLTYTDTPIGWGLD 217
           LVPN+SF GH +GIL G+ Y  + IG  LD
Sbjct: 191 LVPNSSFMGHFAGILSGVIYCKSFIGLFLD 220

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242006593|ref|XP_002424134.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212507451|gb|EEB11396.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  196 bits (497), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 95/211 (45%), Positives = 133/211 (63%), Gaps = 4/211 (1%)

Query: 20  HLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGD 79
             G   IPP TLG +  Q+++Y+     PW   DVC+S + +++ +D+KRL LSA EHGD
Sbjct: 23  QFGMKNIPPITLGSIVGQTLLYMGFINVPWDKEDVCLSGNGILKLKDWKRLFLSALEHGD 82

Query: 80  DMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELS 139
           DMHLYYNM S ++KGR LEK YG   F  ++IFLT+ TS  Y+LLA  +  +  + S + 
Sbjct: 83  DMHLYYNMASFLIKGRSLEKRYGSKCFAIILIFLTILTSGIYVLLAQAMSEVFENDSYMK 142

Query: 140 HCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLS 199
            CAIGFS V+FA+K + T  +P     ++ + +   YA W ELI+I+LLVPN+SF GHL+
Sbjct: 143 SCAIGFSGVIFALKVLTTHEEPSLRATLVGVQIPGKYAAWIELILIHLLVPNSSFMGHLA 202

Query: 200 GILVGLTYTDTPIGWGLDYVVDKCQEMINGE 230
           GIL G+ Y +T  G     V+DK    + G 
Sbjct: 203 GILAGVIYCNTIFG----NVLDKSISFLTGN 229

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322802448|gb|EFZ22798.1| hypothetical protein SINV_10941 [Solenopsis invicta]

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 104/224 (46%), Positives = 140/224 (62%), Gaps = 4/224 (1%)

Query: 1   MTRPRRY----ELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCI 56
           M R RR     E G+ +L + +L+ G D IPPATL  V  Q+++Y  + R PW+  +VCI
Sbjct: 1   MIRNRRRQQGLETGIFMLCMQVLNFGLDKIPPATLIGVIAQTLLYAGLIRVPWNAEEVCI 60

Query: 57  SADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVF 116
           SA  +I+ +D++   LS FEHG DMHLYYNM+S ILKG  LE +YG   F+ L+  L+  
Sbjct: 61  SAVKIIKYKDWRSFFLSNFEHGSDMHLYYNMISFILKGSYLEPLYGTTNFVLLLAILSFG 120

Query: 117 TSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIY 176
            S+ Y+ L YI+  +T D    + CAIGFSA LFA+K +    + D    I    V +  
Sbjct: 121 CSVMYVSLGYILMQLTGDYGYFTACAIGFSATLFALKVVALCEERDKLHNISGFIVPSKL 180

Query: 177 APWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVV 220
           A WFELI+I+LLVPN+SF GHL GILVG  Y+ T IG  LD ++
Sbjct: 181 AVWFELILIHLLVPNSSFIGHLGGILVGCLYSYTFIGETLDNLI 224

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024419|gb|EGI64617.1| Rhomboid domain-containing protein 1 [Acromyrmex echinatior]

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 107/240 (44%), Positives = 146/240 (60%), Gaps = 12/240 (5%)

Query: 1   MTRPRR---YELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCIS 57
           M R RR    + G+ LL +  L+ G D IPPATL  +  Q+++Y+ + R  W+  DVCIS
Sbjct: 1   MMRQRRQQGLQNGIFLLCMQALNFGLDKIPPATLIGIIAQTLLYMGLIRVSWNAEDVCIS 60

Query: 58  ADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFT 117
           A  +I+ ++++   LS FEHG DMHLYYNM+S ILKG  LE IYG   F+ L+  L++  
Sbjct: 61  AIKIIKYKNWRSFFLSNFEHGSDMHLYYNMLSFILKGSYLEPIYGTMNFVLLLGVLSIGC 120

Query: 118 SLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYA 177
           S  Y+ L YI+  +T D    + CAIGFSA LFA+K I    + D  Q I  + V +  A
Sbjct: 121 SAMYVFLGYILMQLTGDYGYFTACAIGFSATLFALKVIALCEERDKLQNINGLIVPSKIA 180

Query: 178 PWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMING-----EEQ 232
            W ELI+I+LLVPN+SF GHL GILVG  Y+ + +G  +D ++     MI G     EEQ
Sbjct: 181 VWLELILIHLLVPNSSFIGHLGGILVGCLYSYSFVGERIDNLI----HMITGTPIIHEEQ 236

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847955|ref|XP_003699618.1| PREDICTED: rhomboid domain-containing protein 1-like [Megachile rotundata]

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 97/215 (45%), Positives = 133/215 (61%)

Query: 3   RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
           R +  + G+ LL +  ++ G D IPPATL  + LQ ++Y+ + + PW+  +VCIS   + 
Sbjct: 7   RQQGLQYGIYLLCLQAINFGIDKIPPATLTSIILQVLLYIGLIKVPWNAEEVCISTIKIF 66

Query: 63  QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
           + RD+K  I+S FEHG DMHLYYNMVSLILKG  LE +YG   F+ L+  L+   S  Y 
Sbjct: 67  KYRDWKSFIISNFEHGSDMHLYYNMVSLILKGSYLEPMYGTMNFVILLAVLSFGCSAMYT 126

Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
            L Y +  +T D    + CAIGFSAVLFA+K I+   + D    +  + V +  A W EL
Sbjct: 127 SLGYALMQLTGDYGYYTQCAIGFSAVLFALKVIVVCEEQDRIHDVGGLRVPSKIAVWVEL 186

Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLD 217
           I+I+LLVP +SF GHL GILVG  Y  T +G  +D
Sbjct: 187 ILIHLLVPQSSFVGHLGGILVGCLYCYTFVGEMID 221

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321459244|gb|EFX70299.1| hypothetical protein DAPPUDRAFT_300486 [Daphnia pulex]

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 95/218 (43%), Positives = 137/218 (62%), Gaps = 1/218 (0%)

Query: 1   MTRPRR-YELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISAD 59
           M R RR  E+G++LL+  +L+ G +T PP T+ +V  Q  +++ +    W    VC+SA 
Sbjct: 1   MARQRRGIEMGVLLLMWQLLNTGLETFPPVTILVVAGQVCLFMGLIPVSWDAGGVCLSAQ 60

Query: 60  AVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSL 119
           AV++ R+Y+RL+LSA EH DD+HLYYNM+S + KGR LE+ +G   F  L+   TV TS+
Sbjct: 61  AVLKWREYERLVLSALEHADDLHLYYNMLSFLSKGRSLERHFGSPYFAYLLSVFTVLTSV 120

Query: 120 YYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPW 179
            Y+ L  ++  + +D      CAIGFS V+FA+K + T      Y++   I V   YA W
Sbjct: 121 TYVGLEVLLSELLHDKQHYKTCAIGFSGVIFALKVLTTSYWESGYRRYFGIRVSGKYAVW 180

Query: 180 FELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLD 217
            ELI I L+VPN SF GHL+GILVG+ YT  P+ + +D
Sbjct: 181 VELIAIQLMVPNTSFVGHLAGILVGVAYTQGPLKFIMD 218

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|197304727|ref|NP_001127873.1| rhomboid domain containing 1 [Nasonia vitripennis]

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 97/223 (43%), Positives = 137/223 (61%), Gaps = 4/223 (1%)

Query: 8   ELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDY 67
           + GL+LL    ++ G D IPPATL  + +QS++Y  + + PW+  DVCIS   +++ +D+
Sbjct: 12  QYGLVLLASQAMNFGIDKIPPATLLGMAVQSLLYAGMIKVPWNPEDVCISTLKILKHKDW 71

Query: 68  KRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYI 127
           +  ++S FEHG DMHLYYNMVS +LKG  LE +YG   F  L+  L++  S  Y+ L Y 
Sbjct: 72  RSFVVSNFEHGSDMHLYYNMVSFLLKGSYLEPMYGTANFALLIGLLSLGCSSMYVFLGYA 131

Query: 128 VFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYL 187
           +  IT D +  + CAIGFSAVLFA+K I+   + D    +    V + +A W EL++I+L
Sbjct: 132 LTQITTDYAYYTSCAIGFSAVLFALKVIVVCEEHDRPTDVGGFRVPSKFAVWAELVLIHL 191

Query: 188 LVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMINGE 230
           LVPN+SF GHL GILVG  Y  T +G     +VD     I G 
Sbjct: 192 LVPNSSFIGHLGGILVGCLYCYTFVG----EIVDSKLSTITGR 230

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307213224|gb|EFN88719.1| Rhomboid domain-containing protein 1 [Harpegnathos saltator]

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 96/218 (44%), Positives = 135/218 (61%)

Query: 3   RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
           R +  + G+ LL    +++G D IPPATL  V  Q+++Y+ + + PW+  +VCISA  + 
Sbjct: 7   RQQGLQYGIYLLFTQTINIGIDRIPPATLIGVISQTLLYIGLIKVPWNAEEVCISAVKIF 66

Query: 63  QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
           + ++++    S FEHG DMHLYYNM+S ILKG  LE IYG   F+ L+  L+   S  Y+
Sbjct: 67  KYKNWRSFFFSNFEHGSDMHLYYNMISFILKGSYLEPIYGTMNFVLLLFILSTGCSAMYV 126

Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
            L YI+  +T D    + CAIGFSA LFA+K I    + D    I    V++  A W EL
Sbjct: 127 SLGYILMQLTGDYGYYTTCAIGFSATLFALKVIALCEERDRLHNINGFQVQSKLAVWVEL 186

Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVV 220
           I+I+LLVPNASF GHL GILVG  Y+ T +G  +D ++
Sbjct: 187 ILIHLLVPNASFVGHLGGILVGCLYSYTFVGEIIDNMI 224

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725934|ref|XP_003401319.1| PREDICTED: rhomboid domain-containing protein 1-like [Bombus terrestris]

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 98/215 (45%), Positives = 132/215 (61%)

Query: 3   RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
           R +  + G+ LL +  L+ G D IPPATL  +  Q ++Y+ + + PW+  +VCISA  V 
Sbjct: 7   RQQGLQYGIYLLCMQALNYGIDKIPPATLITIIAQVLLYVGLIKVPWNAEEVCISAIKVF 66

Query: 63  QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
           + RD+   ++S FEHG DMHLYYNMVSLILKG  LE +YG   F+ L+  L+   S  Y 
Sbjct: 67  KYRDWNSFLISNFEHGSDMHLYYNMVSLILKGSYLEPMYGTINFVILLAILSFGCSTMYA 126

Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
            L Y +  +T D    + CAIGFSA+LFA+K I+   + D  Q +    V +  A W EL
Sbjct: 127 GLGYALMQLTGDYGYYTQCAIGFSAILFALKVIVVCEEYDRIQDVGGFRVSSKIAVWVEL 186

Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLD 217
           I+I+LLVP +SF GHL GILVG  Y  T IG  +D
Sbjct: 187 ILIHLLVPQSSFIGHLGGILVGCLYCYTFIGEIVD 221

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350397339|ref|XP_003484847.1| PREDICTED: rhomboid domain-containing protein 1-like [Bombus impatiens]

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 97/215 (45%), Positives = 131/215 (60%)

Query: 3   RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
           R +  + G+ LL +  L+ G D IPPATL  +  Q ++Y+ + + PW+  +VCISA  V 
Sbjct: 7   RQQGLQYGIYLLCMQALNYGIDKIPPATLITIIAQVLLYVGLIKVPWNAEEVCISAIKVF 66

Query: 63  QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
           +  D+   ++S FEHG DMHLYYNMVSLILKG  LE +YG   F+ L+  L+   S  Y 
Sbjct: 67  KYHDWNSFLISNFEHGSDMHLYYNMVSLILKGSYLEPMYGTINFVMLLAILSFGCSTMYA 126

Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
            L Y +  +T D    + CAIGFSA+LFA+K I+   + D  Q +    V +  A W EL
Sbjct: 127 GLGYALMQLTGDYGYYTQCAIGFSAILFALKVIVVCEEYDRIQDVGGFRVSSKIAVWVEL 186

Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLD 217
           I+I+LLVP +SF GHL GILVG  Y  T IG  +D
Sbjct: 187 ILIHLLVPQSSFIGHLGGILVGCLYCYTFIGEIVD 221

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
MGI|MGI:1924117	315	Rhbdd1 "rhomboid domain contai	0.793	0.609	0.398	2.2e-34
ZFIN|ZDB-GENE-050417-85	335	rhbdd1 "rhomboid domain contai	0.764	0.552	0.426	4.6e-34
UNIPROTKB|E1BT32	239	RHBDD1 "Uncharacterized protei	0.760	0.769	0.401	1.5e-33
RGD|1306477	316	Rhbdd1 "rhomboid domain contai	0.793	0.607	0.398	2e-33
UNIPROTKB|Q4V8F3	316	Rhbdd1 "Rhomboid-related prote	0.793	0.607	0.398	2e-33
UNIPROTKB|E2RD89	316	RHBDD1 "Uncharacterized protei	0.834	0.639	0.370	4.1e-33
UNIPROTKB|E2R6X6	316	RHBDD1 "Uncharacterized protei	0.797	0.610	0.375	1.1e-32
UNIPROTKB|Q8TEB9	315	RHBDD1 "Rhomboid-related prote	0.768	0.590	0.391	3.7e-32
UNIPROTKB|F1MQC7	322	RHBDD1 "Uncharacterized protei	0.768	0.577	0.375	4.7e-32
UNIPROTKB|Q08DF5	267	RHBDD1 "Rhomboid domain contai	0.768	0.696	0.375	4.7e-32

MGI|MGI:1924117 Rhbdd1 "rhomboid domain containing 1" [Mus musculus (taxid:10090)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 80/201 (39%), Positives = 113/201 (56%)

Query:    24 DTIPPATLGLVFLQSMVYLNIFRKPWSTL-DVCISADAVIQQRDYKRLILSAFEHGDDMH 82
             + IPP TL  + +    +LN    PW  L   CIS +   QQ+D++RL+LS   HGDD H
Sbjct:    25 NNIPPVTLATLAVNVWFFLN----PWKPLYHSCISVEKCYQQKDWQRLLLSPLHHGDDWH 80

Query:    83 LYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCA 142
             LY+NMVS++ KG +LE+  G   F  ++   ++ T + Y+LL + V  + N      +CA
Sbjct:    81 LYFNMVSMLWKGVKLERRLGSRWFAYVIATFSLLTGVVYLLLQFTVAELLNQPDFKRNCA 140

Query:   143 IGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGIL 202
             +GFS VLFA+K +     P  +  IL   V   +A W EL+ I+   P  SF GHL+GIL
Sbjct:   141 VGFSGVLFALKVLSNHYCPGGFVNILGFPVPNRFACWAELVAIHFCTPGTSFAGHLAGIL 200

Query:   203 VGLTYTDTPIGWGLDYVVDKC 223
             VGL YT  P    L  ++D C
Sbjct:   201 VGLMYTQGP----LKKIMDTC 217

GO:0004175 "endopeptidase activity" evidence=ISO;ISS

GO:0004252 "serine-type endopeptidase activity" evidence=ISO;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0010954 "positive regulation of protein processing" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IDA

GO:0030433 "ER-associated protein catabolic process" evidence=IDA

GO:0031293 "membrane protein intracellular domain proteolysis" evidence=IDA

GO:0033619 "membrane protein proteolysis" evidence=ISO;ISS

GO:0034620 "cellular response to unfolded protein" evidence=IDA

GO:0034644 "cellular response to UV" evidence=IDA

GO:0043066 "negative regulation of apoptotic process" evidence=ISO;IMP

GO:0043687 "post-translational protein modification" evidence=IDA

GO:0044322 "endoplasmic reticulum quality control compartment" evidence=IDA

GO:0045732 "positive regulation of protein catabolic process" evidence=ISO;ISS

GO:0048515 "spermatid differentiation" evidence=IMP

GO:0051047 "positive regulation of secretion" evidence=ISO;ISS

GO:2000254 "regulation of male germ cell proliferation" evidence=IMP

ZFIN|ZDB-GENE-050417-85 rhbdd1 "rhomboid domain containing 1" [Danio rerio (taxid:7955)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 81/190 (42%), Positives = 110/190 (57%)

Query:    24 DTIPPATLGLVFLQSMVYLNIFR-KPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMH 82
             D IPP TL  + L   VYL +F  KP   L+ C+S       RD+ RL+LS F H DDMH
Sbjct:    25 DNIPPVTLATLGLN--VYLFLFPFKP--LLETCLSVREAYWYRDWSRLLLSPFHHVDDMH 80

Query:    83 LYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCA 142
             LY+NM  L+ KG +LEK  G   F  L+   ++ T   Y+LL   + ++T D+S    CA
Sbjct:    81 LYFNMALLLWKGIRLEKKLGGPWFAYLLSVFSLLTGFVYLLLETGLTHMTEDSSYSLQCA 140

Query:   143 IGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGIL 202
             +GFS VLF +K +     P     I+ + +   YA W EL++I+++ P  SF GHLSGIL
Sbjct:   141 VGFSGVLFGLKVVNNHYHPGGATNIMGLPIANRYACWVELVLIHIMNPGTSFVGHLSGIL 200

Query:   203 VGLTYTDTPI 212
             VGL YT  P+
Sbjct:   201 VGLLYTTGPL 210

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1BT32 RHBDD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 75/187 (40%), Positives = 108/187 (57%)

Query:    26 IPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYY 85
             IP  TL ++ L    +LN  R P    + CIS      +++++RL+LS   H DD HLYY
Sbjct:    27 IPSVTLAVLILNVFFFLNPMR-PLH--EACISVKEAFYRQNWQRLLLSPVHHVDDWHLYY 83

Query:    86 NMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGF 145
             NMVS++ KG  LE+  G   F  ++   +V T + Y+LL +++  I ND S    CA+GF
Sbjct:    84 NMVSMLWKGITLERKLGSMWFAYIIAVFSVLTGIVYVLLEFMLVKILNDPSYEMSCAVGF 143

Query:   146 SAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGL 205
             S VLFA+K +     P     +L + + + YA W EL+ I+ + P  SF GHL+GILVGL
Sbjct:   144 SGVLFALKVLNNHYNPGRVSSVLGLQISSKYACWVELVAIHFIAPRTSFAGHLAGILVGL 203

Query:   206 TYTDTPI 212
              YT  P+
Sbjct:   204 MYTMGPL 210

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0010954 "positive regulation of protein processing" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0031293 "membrane protein intracellular domain proteolysis" evidence=IEA

GO:0034620 "cellular response to unfolded protein" evidence=IEA

GO:0034644 "cellular response to UV" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043687 "post-translational protein modification" evidence=IEA

GO:0044322 "endoplasmic reticulum quality control compartment" evidence=IEA

GO:0045732 "positive regulation of protein catabolic process" evidence=IEA

GO:0048515 "spermatid differentiation" evidence=IEA

GO:0051047 "positive regulation of secretion" evidence=IEA

RGD|1306477 Rhbdd1 "rhomboid domain containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 80/201 (39%), Positives = 110/201 (54%)

Query:    24 DTIPPATLGLVFLQSMVYLNIFRKPWSTL-DVCISADAVIQQRDYKRLILSAFEHGDDMH 82
             + IPP TL  + +    +LN    PW  L   CIS +   QQ D++RL+LS   HGDD H
Sbjct:    25 NNIPPVTLATLAVNVWFFLN----PWKPLYHSCISVEKCYQQNDWQRLLLSPVHHGDDWH 80

Query:    83 LYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCA 142
             LY+NMVS++ KG +LEK  G   F  ++   ++ T + Y+LL +    + N      +CA
Sbjct:    81 LYFNMVSMLWKGVKLEKRLGSRWFAYIIATFSLLTGVVYLLLQFASAELMNQPDFKRNCA 140

Query:   143 IGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGIL 202
             +GFS VLFA+K +     P  +  IL   V   +A W EL  I+   P  SF GHL+GIL
Sbjct:   141 VGFSGVLFALKVLSNHYCPGGFVNILGFPVPNRFACWAELAAIHFCTPGTSFAGHLAGIL 200

Query:   203 VGLTYTDTPIGWGLDYVVDKC 223
             VGL YT  P    L  ++D C
Sbjct:   201 VGLMYTQGP----LKKIMDAC 217

GO:0004175 "endopeptidase activity" evidence=ISO;ISS

GO:0004252 "serine-type endopeptidase activity" evidence=ISO;ISS

GO:0005739 "mitochondrion" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=ISO;ISS

GO:0006915 "apoptotic process" evidence=IEA

GO:0010954 "positive regulation of protein processing" evidence=ISO;ISS

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISO;ISS

GO:0030433 "ER-associated protein catabolic process" evidence=ISO;ISS

GO:0031293 "membrane protein intracellular domain proteolysis" evidence=ISO;ISS

GO:0033619 "membrane protein proteolysis" evidence=ISO;ISS

GO:0034620 "cellular response to unfolded protein" evidence=ISO;ISS

GO:0034644 "cellular response to UV" evidence=ISO;ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISO;ISS

GO:0043687 "post-translational protein modification" evidence=ISO;ISS

GO:0044322 "endoplasmic reticulum quality control compartment" evidence=ISO;ISS

GO:0045732 "positive regulation of protein catabolic process" evidence=ISO;ISS

GO:0048515 "spermatid differentiation" evidence=ISO;ISS

GO:0051047 "positive regulation of secretion" evidence=ISO;ISS

GO:2000254 "regulation of male germ cell proliferation" evidence=ISO;ISS

UNIPROTKB|Q4V8F3 Rhbdd1 "Rhomboid-related protein 4" [Rattus norvegicus (taxid:10116)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 80/201 (39%), Positives = 110/201 (54%)

Query:    24 DTIPPATLGLVFLQSMVYLNIFRKPWSTL-DVCISADAVIQQRDYKRLILSAFEHGDDMH 82
             + IPP TL  + +    +LN    PW  L   CIS +   QQ D++RL+LS   HGDD H
Sbjct:    25 NNIPPVTLATLAVNVWFFLN----PWKPLYHSCISVEKCYQQNDWQRLLLSPVHHGDDWH 80

Query:    83 LYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCA 142
             LY+NMVS++ KG +LEK  G   F  ++   ++ T + Y+LL +    + N      +CA
Sbjct:    81 LYFNMVSMLWKGVKLEKRLGSRWFAYIIATFSLLTGVVYLLLQFASAELMNQPDFKRNCA 140

Query:   143 IGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGIL 202
             +GFS VLFA+K +     P  +  IL   V   +A W EL  I+   P  SF GHL+GIL
Sbjct:   141 VGFSGVLFALKVLSNHYCPGGFVNILGFPVPNRFACWAELAAIHFCTPGTSFAGHLAGIL 200

Query:   203 VGLTYTDTPIGWGLDYVVDKC 223
             VGL YT  P    L  ++D C
Sbjct:   201 VGLMYTQGP----LKKIMDAC 217

GO:0033619 "membrane protein proteolysis" evidence=ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISS

GO:0045732 "positive regulation of protein catabolic process" evidence=ISS

UNIPROTKB|E2RD89 RHBDD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 79/213 (37%), Positives = 117/213 (54%)

Query:    24 DTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHL 83
             + IPP TL  + L    +LN   KP    + C+S +   QQ+D++RL+LS   H DD HL
Sbjct:    25 NNIPPVTLATLALNVWFFLNPL-KP--LYESCLSVEKCYQQKDWQRLLLSPLHHADDWHL 81

Query:    84 YYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAI 143
             Y+NM S++ KG  LE+  G   F  +++  ++ T + Y+ L + +   T++     +CA+
Sbjct:    82 YFNMASMLWKGINLERRLGSRWFAYIIVTFSLLTGVVYLFLEFALAEFTDEPGFRRNCAV 141

Query:   144 GFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILV 203
             GFS VLFA+K +     P  +  IL   V   +A W EL+ I+ + P  SF GHL+GILV
Sbjct:   142 GFSGVLFALKVLNNHYCPGGFANILGFPVPNRFACWAELVAIHFISPGTSFAGHLAGILV 201

Query:   204 GLTYTDTPIGWGLDYVVDKCQEMINGEEQEDMG 236
             GL YT  P    L  +++KC     G EQ   G
Sbjct:   202 GLMYTHGP----LKKIMEKCA----GTEQNTFG 226

GO:0051047 "positive regulation of secretion" evidence=IEA

GO:0048515 "spermatid differentiation" evidence=IEA

GO:0045732 "positive regulation of protein catabolic process" evidence=IEA

GO:0044322 "endoplasmic reticulum quality control compartment" evidence=IEA

GO:0043687 "post-translational protein modification" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0034644 "cellular response to UV" evidence=IEA

GO:0034620 "cellular response to unfolded protein" evidence=IEA

GO:0031293 "membrane protein intracellular domain proteolysis" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0010954 "positive regulation of protein processing" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

UNIPROTKB|E2R6X6 RHBDD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 75/200 (37%), Positives = 113/200 (56%)

Query:    24 DTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHL 83
             + IPP TL  + L    +LN   KP    + C+S +   QQ+D++RL+LS   H DD HL
Sbjct:    25 NNIPPVTLATLALNVWFFLNPL-KP--LYESCLSVEKCYQQKDWQRLLLSPLHHADDWHL 81

Query:    84 YYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAI 143
             Y+NM S++ KG  LE+  G   F  +++  ++ T + Y+ L + +   T++     +CA+
Sbjct:    82 YFNMASMLWKGINLERRLGSRWFAYIIVTFSLLTGVVYLFLEFALAEFTDEPGFRRNCAV 141

Query:   144 GFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILV 203
             GFS VLFA+K +     P  +  IL   V   +A W EL+ I+ + P  SF GHL+GILV
Sbjct:   142 GFSGVLFALKVLNNHYCPGGFANILGFPVPNRFACWAELVAIHFISPGTSFAGHLAGILV 201

Query:   204 GLTYTDTPIGWGLDYVVDKC 223
             GL YT  P    L  +++KC
Sbjct:   202 GLMYTHGP----LKKIMEKC 217

GO:0016021 "integral to membrane" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

UNIPROTKB|Q8TEB9 RHBDD1 "Rhomboid-related protein 4" [Homo sapiens (taxid:9606)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 74/189 (39%), Positives = 107/189 (56%)

Query:    24 DTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHL 83
             + IPP TL  + L    +LN  +  +S+   C+S +   QQ+D++RL+LS   H DD HL
Sbjct:    25 NNIPPVTLATLALNIWFFLNPQKPLYSS---CLSVEKCYQQKDWQRLLLSPLHHADDWHL 81

Query:    84 YYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAI 143
             Y+NM S++ KG  LE+  G   F  ++   +V T + Y+LL + V    ++      CA+
Sbjct:    82 YFNMASMLWKGINLERRLGSRWFAYVITAFSVLTGVVYLLLQFAVAEFMDEPDFKRSCAV 141

Query:   144 GFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILV 203
             GFS VLFA+K +     P  +  IL   V   +A W EL+ I+L  P  SF GHL+GILV
Sbjct:   142 GFSGVLFALKVLNNHYCPGGFVNILGFPVPNRFACWVELVAIHLFSPGTSFAGHLAGILV 201

Query:   204 GLTYTDTPI 212
             GL YT  P+
Sbjct:   202 GLMYTQGPL 210

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IDA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0034644 "cellular response to UV" evidence=ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISS;IMP;IDA

GO:0048515 "spermatid differentiation" evidence=ISS

GO:2000254 "regulation of male germ cell proliferation" evidence=ISS

GO:0045732 "positive regulation of protein catabolic process" evidence=IMP;IDA

GO:0033619 "membrane protein proteolysis" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0004175 "endopeptidase activity" evidence=IDA

GO:0051047 "positive regulation of secretion" evidence=IMP

GO:0010954 "positive regulation of protein processing" evidence=ISS

GO:0031293 "membrane protein intracellular domain proteolysis" evidence=ISS

GO:0034620 "cellular response to unfolded protein" evidence=ISS

GO:0043687 "post-translational protein modification" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=ISS

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISS

GO:0044322 "endoplasmic reticulum quality control compartment" evidence=ISS

GO:0030433 "ER-associated protein catabolic process" evidence=ISS

UNIPROTKB|F1MQC7 RHBDD1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 71/189 (37%), Positives = 107/189 (56%)

Query:    24 DTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHL 83
             + +PP TL  + L    +LN   KP   L  C+S +    Q+D++RL+LS   H DD HL
Sbjct:    25 NNVPPVTLATLALNIWFFLNPL-KP--LLSSCLSVEKCYYQKDWQRLLLSPLHHADDWHL 81

Query:    84 YYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAI 143
             Y+NMVS++ KG  LE+  G   F  +++  ++ T + Y+ L + +    N+     +CA+
Sbjct:    82 YFNMVSMLWKGIHLERRLGSRWFAYIIVTFSLLTGVVYLFLEFALAEFLNEPDFKRNCAV 141

Query:   144 GFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILV 203
             GFS VLFA+K +     P  +  +L   V   +A W EL+ I+ + P  SF GHL+GILV
Sbjct:   142 GFSGVLFALKVLNNHCCPGGFVNVLGFPVSNRFACWVELLAIHFISPGTSFAGHLAGILV 201

Query:   204 GLTYTDTPI 212
             GL YT  P+
Sbjct:   202 GLMYTHGPL 210

GO:0051047 "positive regulation of secretion" evidence=IEA

GO:0048515 "spermatid differentiation" evidence=IEA

GO:0045732 "positive regulation of protein catabolic process" evidence=IEA

GO:0044322 "endoplasmic reticulum quality control compartment" evidence=IEA

GO:0043687 "post-translational protein modification" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0034644 "cellular response to UV" evidence=IEA

GO:0034620 "cellular response to unfolded protein" evidence=IEA

GO:0031293 "membrane protein intracellular domain proteolysis" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0010954 "positive regulation of protein processing" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

UNIPROTKB|Q08DF5 RHBDD1 "Rhomboid domain containing 1" [Bos taurus (taxid:9913)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 71/189 (37%), Positives = 107/189 (56%)

Query:    24 DTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHL 83
             + +PP TL  + L    +LN   KP   L  C+S +    Q+D++RL+LS   H DD HL
Sbjct:    25 NNVPPVTLATLALNIWFFLNPL-KP--LLSSCLSVEKCYYQKDWQRLLLSPLHHADDWHL 81

Query:    84 YYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAI 143
             Y+NMVS++ KG  LE+  G   F  +++  ++ T + Y+ L + +    N+     +CA+
Sbjct:    82 YFNMVSMLWKGIHLERRLGSRWFAYIIVTFSLLTGVVYLFLEFALAEFLNEPDFKRNCAV 141

Query:   144 GFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILV 203
             GFS VLFA+K +     P  +  +L   V   +A W EL+ I+ + P  SF GHL+GILV
Sbjct:   142 GFSGVLFALKVLNNHCCPGGFVNVLGFPVSNRFACWVELLAIHFISPGTSFAGHLAGILV 201

Query:   204 GLTYTDTPI 212
             GL YT  P+
Sbjct:   202 GLMYTHGPL 210

GO:0016021 "integral to membrane" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q4V8F3	RHBL4_RAT	3, ., 4, ., 2, 1, ., -	0.4009	0.8801	0.6740	yes	N/A
Q5RBS4	RHBL4_PONAB	3, ., 4, ., 2, 1, ., -	0.3891	0.8842	0.6729	yes	N/A
Q8BHC7	RHBL4_MOUSE	3, ., 4, ., 2, 1, ., -	0.3963	0.8801	0.6761	yes	N/A
Q8TEB9	RHBL4_HUMAN	3, ., 4, ., 2, 1, ., -	0.3936	0.8842	0.6793	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	0.691
3rd Layer	3.4.21.105	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	242
pfam01694	146	pfam01694, Rhomboid, Rhomboid family	1e-14
COG0705	228	COG0705, COG0705, Membrane associated serine prote	3e-08

>gnl|CDD|216649 pfam01694, Rhomboid, Rhomboid family

 Score = 68.4 bits (168), Expect = 1e-14
 Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 14/150 (9%)

Query: 61  VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
           ++Q+    RLI S F H   +HL +NM++L+  G  LE+I G  +FL L +   +  SL 
Sbjct: 1   LLQRGQLWRLITSMFLHAGWLHLLFNMLALLFFGIPLERILGSVRFLLLYLLSGLAGSLL 60

Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWF 180
             L +             S  ++G S  +F +   L  L P     + N    A+     
Sbjct: 61  SYLFSP-----------ASSPSVGASGAIFGLLGALLVLLPRNRILLFN-FPGALLLLLG 108

Query: 181 ELIIIYLLV--PNASFKGHLSGILVGLTYT 208
            +++  LL   P  S   HL G++ GL   
Sbjct: 109 IILLNLLLGFLPGISNFAHLGGLIAGLLLG 138

This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. Length = 146

>gnl|CDD|223777 COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]

 Score = 52.5 bits (126), Expect = 3e-08
 Identities = 46/202 (22%), Positives = 79/202 (39%), Gaps = 34/202 (16%)

Query: 27  PPATLGLVFLQSMVYLNIFRKPWSTLDVCISADA-----------VIQQRDYKRLILSAF 75
           PP TL L+ L  +V+L      WS + +                  + +    RLI + F
Sbjct: 17  PPVTLFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRLITAIF 76

Query: 76  EHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDT 135
            H   +HL +NM++L + G  LE+  G  +FL   +   +   L  +L        +   
Sbjct: 77  LHAGFLHLLFNMLALWVFGSNLERRLGTLRFLLFYLLSGLLAGLAQVLFGPKGGAPS--- 133

Query: 136 SELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLV------ 189
                  +G S  +F +      L P A    + +   ++  P   LI+I+LL       
Sbjct: 134 -------LGASGAIFGLLGAYFLLFPFA---RILLLFLSLPRPALILILIWLLYSLFSGA 183

Query: 190 ----PNASFKGHLSGILVGLTY 207
               P+ ++  HL G++ GL  
Sbjct: 184 GSFGPSVAWSAHLGGLIGGLLL 205

Length = 228

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	242
KOG2632|consensus	258		99.93
PRK10907	276	intramembrane serine protease GlpG; Provisional	99.93
PTZ00101	278	rhomboid-1 protease; Provisional	99.92
COG0705	228	Membrane associated serine protease [Amino acid tr	99.89
KOG0858|consensus	239		99.84
PF01694	145	Rhomboid: Rhomboid family; InterPro: IPR022764 In	99.84
PF04511	197	DER1: Der1-like family; InterPro: IPR007599 The en	99.8
KOG2289|consensus	316		99.71
COG5291	313	Predicted membrane protein [Function unknown]	99.41
KOG2290|consensus	652		99.3
PF08551	99	DUF1751: Eukaryotic integral membrane protein (DUF	99.29
KOG2890|consensus	326		99.21
KOG4463|consensus	323		98.75
KOG2980|consensus	310		98.62

>KOG2632|consensus

Probab=99.93  E-value=7.5e-25  Score=180.83  Aligned_cols=184  Identities=32%  Similarity=0.462  Sum_probs=161.3

Q ss_pred             CCCCCchHHHHHHHHHHHHHHhhhcccccccchhcchhhhhccCccceeehhhhccCChhHHHHHHHHHHHhHHHHHHhh
Q psy6649          22 GADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIY  101 (242)
Q Consensus        22 ~~~~~p~vt~~li~~~v~v~~l~~~~~~~~~~~~~~~~~v~~~~q~wrllT~~f~H~~~~hll~N~~~l~~~g~~lE~~~  101 (242)
                      .+...|.+|..++.++.++|+.......  .+.+..|...+++.|.||++||+++|.|..|+++||+.++..|..+|+.+
T Consensus        10 ~~~~~p~~ts~~~~~~~~i~lv~~~~~i--~~~~~l~~~~l~~~ql~RL~Ty~l~H~s~~hllfnmlaL~~~g~~fE~~~   87 (258)
T KOG2632|consen   10 FWMKIPLLTSIVVVLAILIYLVSFFPGI--VEVLGLPSELLINWQLYRLITYALVHLSLPHLLFNMLALWPLGSQFERTH   87 (258)
T ss_pred             ccccchHHHHHHHHHHHHHHHHhccchh--hhHhcCCHHHhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhchhHHHhhc
Confidence            3457899999999999999998877643  36677777788899999999999999999999999999999999999999


Q ss_pred             C-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHHHHHHHhcCCCcceeEEe-eeehhhHHHH
Q psy6649         102 G-WGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILN-INVKAIYAPW  179 (242)
Q Consensus       102 G-~~~fl~~~l~~~~~~~l~~~l~~~~~~~~~~~p~~~~~~~~G~Sg~v~all~~~~~~~p~~~~~i~~-i~i~~~~~~~  179 (242)
                      | +.+++.+....+++++++.++.....   ..++.......+|.|+++||+++......|.....++| +.||.++.||
T Consensus        88 G~t~~~l~~~~llalf~gIl~ll~~~~~---~~~d~~~~~~a~G~s~v~Fam~~~~~~~sp~r~~~~fg~~siP~~l~Pw  164 (258)
T KOG2632|consen   88 GTTVRILMFTVLLALFSGILYLLAYHVF---LLSDLVYVEGAIGFSGVLFAMMAVLEVQSPVRSRSVFGLFSIPIVLAPW  164 (258)
T ss_pred             cceehHHHHHHHHHHHHHHHHHHHHHHH---hhcchhhhcccccccHHHHHHHHHHhhcCcccchhhcccccccHHHHHH
Confidence            9 89999999999999999998776522   12222225568999999999999988889998888898 7899999999


Q ss_pred             HHHHHHHhhCCChhHHHHHHHHHHhHHHhhc
Q psy6649         180 FELIIIYLLVPNASFKGHLSGILVGLTYTDT  210 (242)
Q Consensus       180 i~~~~~~~~~~~~s~~~hl~G~l~G~~~~~~  210 (242)
                      +.+..+.+..|+.|..+|++|+++|+.|++.
T Consensus       165 ~lLi~~~~lvp~aSFlghl~GllvG~ay~~~  195 (258)
T KOG2632|consen  165 ALLIATQILVPQASFLGHLCGLLVGYAYAFS  195 (258)
T ss_pred             HHHHHHHHHccCchHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999994

>PRK10907 intramembrane serine protease GlpG; Provisional

Probab=99.93  E-value=5e-25  Score=187.70  Aligned_cols=170  Identities=17%  Similarity=0.172  Sum_probs=125.0

Q ss_pred             CCchHHHHHHHHHHHHHHhhhccccc-ccchhcchhhhhccCccceeehhhhccCChhHHHHHHHHHHHhHHHHHHhhCh
Q psy6649          25 TIPPATLGLVFLQSMVYLNIFRKPWS-TLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGW  103 (242)
Q Consensus        25 ~~p~vt~~li~~~v~v~~l~~~~~~~-~~~~~~~~~~v~~~~q~wrllT~~f~H~~~~hll~N~~~l~~~g~~lE~~~G~  103 (242)
                      +..|+|..++++|+++|++....... ...+...|....+++|+||++|+.|+|.|+.|+++|+++++.+|+.+|+.+|+
T Consensus        92 ~~~p~T~~li~i~i~vf~l~~~~~~~~~~~~l~~~~~~~~~~q~WRl~T~~flH~~~~Hl~fNml~l~~lG~~iE~~~G~  171 (276)
T PRK10907         92 RAGPLTLGVMIACVVVFILMQILGDQTVMLWLAWPFDPSLKFELWRYFTHALLHFSLLHILFNLLWWWYLGGAVEKRLGS  171 (276)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhccHHHHHHHhccccccccCCcHHHHhHHHHhCCHHHHHHHHHHHHHHHHHHHHHHCh
Confidence            45679999999999999887665431 22233334344457899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHHHHHHHhc---CCCcceeEEeeeehhhHHH--
Q psy6649         104 GKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRL---QPDAYQQILNINVKAIYAP--  178 (242)
Q Consensus       104 ~~fl~~~l~~~~~~~l~~~l~~~~~~~~~~~p~~~~~~~~G~Sg~v~all~~~~~~---~p~~~~~i~~i~i~~~~~~--  178 (242)
                      +|++.+|+++++.+++.+..        +..+     ...|+||++||++++....   .|+..     ..+|.....  
T Consensus       172 ~~~l~l~l~s~i~~~~~~~~--------~~~~-----~~gGaSGvVygL~g~~~~~~~~~p~~~-----~~lp~~~~~f~  233 (276)
T PRK10907        172 GKLIVITLISALLSGWVQSK--------FSGP-----WFGGLSGVVYALMGYVWLRGERDPQSG-----IYLPRGLIAFA  233 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--------Hccc-----hhhHHHHHHHHHHHHHHHHhccccccc-----hhhhHHHHHHH
Confidence            99999999999999987632        2222     2579999999999865332   23322     123322222  


Q ss_pred             --HHHHHHHHhhCCChhHHHHHHHHHHhHHHhhccc
Q psy6649         179 --WFELIIIYLLVPNASFKGHLSGILVGLTYTDTPI  212 (242)
Q Consensus       179 --~i~~~~~~~~~~~~s~~~hl~G~l~G~~~~~~~~  212 (242)
                        ++.........+++++.+|++|+++|.++++...
T Consensus       234 llwl~~g~~~~~g~~Ian~AHlgGli~Gll~g~~~~  269 (276)
T PRK10907        234 LLWLVAGYFDLFGMSIANAAHVAGLAVGLAMAFWDT  269 (276)
T ss_pred             HHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhh
Confidence              2212223344678999999999999999887543

>PTZ00101 rhomboid-1 protease; Provisional

Probab=99.92  E-value=1.1e-24  Score=185.33  Aligned_cols=179  Identities=19%  Similarity=0.196  Sum_probs=128.6

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHhhhccc-c--------cccch-hcchhhhhccCccceeehhhhccCChhHHHHHHHHH
Q psy6649          21 LGADTIPPATLGLVFLQSMVYLNIFRKP-W--------STLDV-CISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSL   90 (242)
Q Consensus        21 ~~~~~~p~vt~~li~~~v~v~~l~~~~~-~--------~~~~~-~~~~~~v~~~~q~wrllT~~f~H~~~~hll~N~~~l   90 (242)
                      +|--++|.++..++++++++|++..... .        ...++ ...|+.+ +++||||++|+.|+|.++.|+++|++++
T Consensus        47 Fp~f~i~~l~~~Iiii~iivfil~l~~~~~~~l~p~~~~L~~~Ga~~~~~i-~~gq~WRLiT~~FlH~~~~HLl~Nm~~l  125 (278)
T PTZ00101         47 FPHFTWKSFIMAISIIQIIVFIISVSIKPADFLTPSDSLLVTLGANVASRI-KQGEIHRLILPIFLHANIFHTFFNVFFQ  125 (278)
T ss_pred             cCCccHHHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHhCcchhhh-hcCCCHHHHHHHHHccCHHHHHHHHHHH
Confidence            6777889999999999999988765421 1        11223 2355554 6799999999999999999999999999


Q ss_pred             HHhHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHHHHHHHhcC------CCcc
Q psy6649          91 ILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQ------PDAY  164 (242)
Q Consensus        91 ~~~g~~lE~~~G~~~fl~~~l~~~~~~~l~~~l~~~~~~~~~~~p~~~~~~~~G~Sg~v~all~~~~~~~------p~~~  164 (242)
                      +.+|..+|+.+|+.|+..+|+.+++.+++.....         .+   ....+|+||++||++++.....      ...+
T Consensus       126 ~~~G~~lE~~~G~~r~~ilYl~sGi~G~l~s~~~---------~~---~~~svGASgAifGLiGa~~~~lil~w~~~~~~  193 (278)
T PTZ00101        126 LRMGFTLEKNYGIVKIIILYFLTGIYGNILSSSV---------TY---CPIKVGASTSGMGLLGIVTSELILLWHVIRHR  193 (278)
T ss_pred             HHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHH---------cc---CCcEEehhHHHHHHHHHHHHHHHHHHHhhccH
Confidence            9999999999999999999999999999876422         12   2347999999999998764211      0111


Q ss_pred             eeEEeeeehhhHHHHHHH--HHHHhhCCChhHHHHHHHHHHhHHHhhccccchh
Q psy6649         165 QQILNINVKAIYAPWFEL--IIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGL  216 (242)
Q Consensus       165 ~~i~~i~i~~~~~~~i~~--~~~~~~~~~~s~~~hl~G~l~G~~~~~~~~~~~~  216 (242)
                      ...    +.......+..  .......+++|+.+|++|+++|++++..+.++..
T Consensus       194 ~~~----~~~~i~~~li~~~l~~~~~g~~Id~~aHlGG~i~G~llg~~~~~~l~  243 (278)
T PTZ00101        194 ERV----VFNIIFFSLISFFYYFTFNGSNIDHVGHLGGLLSGISMGILYNSQME  243 (278)
T ss_pred             HHH----HHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHhhhh
Confidence            000    00001111111  1122235789999999999999999998766443

>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]

Probab=99.89  E-value=1.2e-22  Score=169.89  Aligned_cols=183  Identities=23%  Similarity=0.296  Sum_probs=137.4

Q ss_pred             CchHHHHHHHHHHHHHHhhhcccccc-cc-------hhcchhhhhccC---ccceeehhhhccCChhHHHHHHHHHHHhH
Q psy6649          26 IPPATLGLVFLQSMVYLNIFRKPWST-LD-------VCISADAVIQQR---DYKRLILSAFEHGDDMHLYYNMVSLILKG   94 (242)
Q Consensus        26 ~p~vt~~li~~~v~v~~l~~~~~~~~-~~-------~~~~~~~v~~~~---q~wrllT~~f~H~~~~hll~N~~~l~~~g   94 (242)
                      .|+++..++.+|+.++.......+.. ..       ....|.......   |+||++|+.|+|.|+.|+++|++.++.+|
T Consensus        16 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~lit~~FlH~~~~Hll~N~~~l~~fg   95 (228)
T COG0705          16 APPVTLFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRLITAIFLHAGFLHLLFNMLALWVFG   95 (228)
T ss_pred             cchHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhHHhhcchhhhccccccchHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence            58999999999999999887765421 11       334444433322   89999999999999999999999999999


Q ss_pred             HHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHHHHHHHhcCCCcceeEEe--eee
Q psy6649          95 RQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILN--INV  172 (242)
Q Consensus        95 ~~lE~~~G~~~fl~~~l~~~~~~~l~~~l~~~~~~~~~~~p~~~~~~~~G~Sg~v~all~~~~~~~p~~~~~i~~--i~i  172 (242)
                      ..+|+..|+.||+.+|+.+++++++.+...+.        ..  ..+.+|+||+++|+++++..+.|..+.....  ++.
T Consensus        96 ~~le~~~G~~~f~~~yl~~gl~~~~~~~~~~~--------~~--~~~~~GASG~i~gllga~~~~~~~~~~~~~~~~~~~  165 (228)
T COG0705          96 SNLERRLGTLRFLLFYLLSGLLAGLAQVLFGP--------KG--GAPSLGASGAIFGLLGAYFLLFPFARILLLFLSLPR  165 (228)
T ss_pred             HHHHHHhchhHHHHHHHHHHHHHHHHHHHHcc--------cc--cCcccchhHHHHHHHHHHHHHccccchhhhhccCch
Confidence            99999999999999999999999998643221        11  2468999999999999999999987766654  333


Q ss_pred             hhhHHHHHH--HHHHH-hhC--CChhHHHHHHHHHHhHHHhhccccchhhH
Q psy6649         173 KAIYAPWFE--LIIIY-LLV--PNASFKGHLSGILVGLTYTDTPIGWGLDY  218 (242)
Q Consensus       173 ~~~~~~~i~--~~~~~-~~~--~~~s~~~hl~G~l~G~~~~~~~~~~~~~~  218 (242)
                      +......+.  ...+. ...  +++++.+|++|++.|.+++....++...+
T Consensus       166 ~~~~~i~~~~~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~~~~~~~~~  216 (228)
T COG0705         166 PALILILIWLLYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALLSRKLRKR  216 (228)
T ss_pred             hHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            333322221  11111 112  25889999999999999998877655433

>KOG0858|consensus

Probab=99.84  E-value=4.6e-20  Score=150.50  Aligned_cols=171  Identities=23%  Similarity=0.261  Sum_probs=142.2

Q ss_pred             CCCCchHHHHHHHHHHHHHHhhhcccccccchhcchhhhhccCccceeehhhhccCC-hhHHHHHHHHHHHhHHHHHHhh
Q psy6649          23 ADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGD-DMHLYYNMVSLILKGRQLEKIY  101 (242)
Q Consensus        23 ~~~~p~vt~~li~~~v~v~~l~~~~~~~~~~~~~~~~~v~~~~q~wrllT~~f~H~~-~~hll~N~~~l~~~g~~lE~~~  101 (242)
                      +.++||+||...++|+++.+++...-.++.++.++|+.++++.|+||++|+.+..+. -+|.++|+++++..++.+|+-.
T Consensus         9 ~~~iPpVTR~~~~~~v~tt~~~~l~lIsP~~l~~~p~Lv~kk~QiWRliTs~lyfg~~gf~fl~n~~FlyrY~~~LE~g~   88 (239)
T KOG0858|consen    9 YLQIPPVTRYYTTACVVTTLLVRLDLISPFQLYLNPELVFKKFQIWRLITSFLYFGPFGFDFLMNLYFLYRYSSMLEEGS   88 (239)
T ss_pred             HhcCChHHHHHHHHHHHHHHHHhhcccCchheEecHHHHHhHhHHHHhhhhhheeccccHHHHHHHHHHHHHHHHHhcCC
Confidence            478999999999999999999998888889999999999999999999999999987 5899999999999999999844


Q ss_pred             -C--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHHHHHHHhcCCCcceeEEe-eeehhhHH
Q psy6649         102 -G--WGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILN-INVKAIYA  177 (242)
Q Consensus       102 -G--~~~fl~~~l~~~~~~~l~~~l~~~~~~~~~~~p~~~~~~~~G~Sg~v~all~~~~~~~p~~~~~i~~-i~i~~~~~  177 (242)
                       .  +++|+..++.++++-.+...    ..     +      ...=.++.++++.+.|++.+|+.+++++| ++++++++
T Consensus        89 f~~rtadf~~mllf~~~l~~~~~~----~~-----~------~~fLg~~l~~~l~YvWs~~Np~~~v~F~g~~~f~a~Yl  153 (239)
T KOG0858|consen   89 FRGRTADFLYMLLFGAVLLTLTGL----FV-----Y------IVFLGQSLVFMLVYVWSKRNPDVIVSFFGLITFKAPYL  153 (239)
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHH----HH-----H------HHHHHHHHHHHHHHHHHhhCCCceEEEEEEecCccccc
Confidence             2  36788887766665554332    11     1      12234566788889999999999999999 89999999


Q ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHHhHHHhhc
Q psy6649         178 PWFELIIIYLLVPNASFKGHLSGILVGLTYTDT  210 (242)
Q Consensus       178 ~~i~~~~~~~~~~~~s~~~hl~G~l~G~~~~~~  210 (242)
                      ||++..+..+...+ + ...+.|+++|++|.+.
T Consensus       154 Pwvll~fs~l~g~~-~-~~dllGi~~GHiy~fl  184 (239)
T KOG0858|consen  154 PWVLLGFSFLFGGS-I-LVDLLGIIVGHIYYFL  184 (239)
T ss_pred             hHHHHHHHHHhCCc-h-HHHHHhhhhheeEEEE
Confidence            99988777665544 3 7899999999998775

>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.84  E-value=2.8e-21  Score=150.27  Aligned_cols=138  Identities=28%  Similarity=0.446  Sum_probs=100.4

Q ss_pred             ccCccceeehhhhccCChhHHHHHHHHHHHhHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccc
Q psy6649          63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCA  142 (242)
Q Consensus        63 ~~~q~wrllT~~f~H~~~~hll~N~~~l~~~g~~lE~~~G~~~fl~~~l~~~~~~~l~~~l~~~~~~~~~~~p~~~~~~~  142 (242)
                      +++|+||++|++|+|.|+.|+++|++.++.+|..+|+.+|+.++..+++.+++.+++..++...        +   ....
T Consensus         2 ~~~~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~~G~~~~~~~~l~~~~~~~l~~~~~~~--------~---~~~~   70 (145)
T PF01694_consen    2 QNGQWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERRLGSRRFLALYLLSGLLGSLLSLLFSP--------P---NQPY   70 (145)
T ss_dssp             GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------S-------
T ss_pred             CCCcchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhhccchHHHHHHHHHHHhhhhccccccc--------c---cccc
Confidence            6789999999999999999999999999999999999999999999999999999888754322        1   1157


Q ss_pred             ccHHHHHHHHHHHHHhcCCCcceeEEe----eeehhhHHHHHHHHHHHhhCCChhHHHHHHHHHHhHHHhhccccc
Q psy6649         143 IGFSAVLFAMKTILTRLQPDAYQQILN----INVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGW  214 (242)
Q Consensus       143 ~G~Sg~v~all~~~~~~~p~~~~~i~~----i~i~~~~~~~i~~~~~~~~~~~~s~~~hl~G~l~G~~~~~~~~~~  214 (242)
                      .|+||+++|+++.+....|+.+.....    ..+.....++.   ......++.++.+|++|+++|.+++...+|+
T Consensus        71 ~G~Sg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~hl~G~~~G~~~~~~~~~~  143 (145)
T PF01694_consen   71 VGASGAVFGLLGAFLFLYPQNKKRLRFIYLALVVPIIVLVII---LLLGFIPNISFLGHLGGFLAGLLYGFLILRR  143 (145)
T ss_dssp             -SSHHHHHHHHHHHHHHHHCCCCCS---HCCCCCCCCCCCHH---HCTSSSSTTTHHHHHHHHHHHHHHHHHHCH-
T ss_pred             CCCcccchHHHHHHHHHHhhccchhhcchHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999987776655333221    12221111111   1111268899999999999999999988764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....

>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins

Probab=99.80  E-value=1.5e-18  Score=141.98  Aligned_cols=174  Identities=23%  Similarity=0.265  Sum_probs=136.7

Q ss_pred             CchHHHHHHHHHHHHHHhhhcccccccchhcchhhhhccCccceeehhhhccCCh-hHHHHHHHHHHHhHHHHHHh-hC-
Q psy6649          26 IPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDD-MHLYYNMVSLILKGRQLEKI-YG-  102 (242)
Q Consensus        26 ~p~vt~~li~~~v~v~~l~~~~~~~~~~~~~~~~~v~~~~q~wrllT~~f~H~~~-~hll~N~~~l~~~g~~lE~~-~G-  102 (242)
                      +||+||.+++.++++.++......++.++.++++.++++.|+||++|+.|..++. .++++|++.++..++.+|+. ++ 
T Consensus         1 iPpVTR~~~~~~~~~s~l~~~~~~~~~~l~~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~~   80 (197)
T PF04511_consen    1 IPPVTRYWLISTVALSLLVSFGIISPYYLYFDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQG   80 (197)
T ss_pred             CChhHHHHHHHHHHHHHHHHCCCCCHHHeeECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCCC
Confidence            5999999999999999988877667788889999999999999999999998766 79999999999999999997 33 


Q ss_pred             h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHHHHHHHhcCCCcceeEEe-eeehhhHHHHH
Q psy6649         103 W-GKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILN-INVKAIYAPWF  180 (242)
Q Consensus       103 ~-~~fl~~~l~~~~~~~l~~~l~~~~~~~~~~~p~~~~~~~~G~Sg~v~all~~~~~~~p~~~~~i~~-i~i~~~~~~~i  180 (242)
                      + .+++...+.+++...+..    ...    ..+ . .....-.++...++.+.+++.+|+.+++++| +++|+++.|++
T Consensus        81 ~~ady~~~ll~~~~~i~~~~----~~~----~~~-~-~~~~~l~~~l~~~l~Y~wsr~np~~~v~~~g~~~i~a~ylP~~  150 (197)
T PF04511_consen   81 RSADYLWFLLFGASLILILS----LLI----GPY-F-FNIPFLGSSLSFALTYIWSRKNPNAQVSFFGLFTIKAKYLPWV  150 (197)
T ss_pred             CHHHHHHHHHHHHHHHHHHH----Hhh----ccc-h-hHHHHHHHHHHHHHHHHHHHhCcccceeeEEEEEEChhhHHHH
Confidence            2 567777664443333322    211    000 0 0112334668889999999999999999998 79999999999


Q ss_pred             HHHHHHhhCCChhHHHHHHHHHHhHHHhhc
Q psy6649         181 ELIIIYLLVPNASFKGHLSGILVGLTYTDT  210 (242)
Q Consensus       181 ~~~~~~~~~~~~s~~~hl~G~l~G~~~~~~  210 (242)
                      +..+..+..++ +...++.|+++|++|.+.
T Consensus       151 ~~~~~~l~~~~-~~~~~l~Gi~~Ghly~fl  179 (197)
T PF04511_consen  151 LLAFSLLFGGS-SPIPDLLGILVGHLYYFL  179 (197)
T ss_pred             HHHHHHHhCCC-cHHHHHHHHHHHHHHHHH
Confidence            87776665553 566899999999999864

For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.

>KOG2289|consensus

Probab=99.71  E-value=1.1e-18  Score=149.95  Aligned_cols=136  Identities=21%  Similarity=0.244  Sum_probs=101.9

Q ss_pred             hhhccCccceeehhhhccCChhHHHHHHHHHHHhHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q psy6649          60 AVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELS  139 (242)
Q Consensus        60 ~v~~~~q~wrllT~~f~H~~~~hll~N~~~l~~~g~~lE~~~G~~~fl~~~l~~~~~~~l~~~l~~~~~~~~~~~p~~~~  139 (242)
                      +..+++|+||++|++++|+++.|+.+|+..+..+|..+|..+|..|+..+|+++++.|+++..+.         +|   +
T Consensus       112 ~~~~r~E~WRllTym~LHaGi~HL~~N~~~ql~iGi~LE~~~G~~RiglIYl~gg~aGSlls~l~---------d~---~  179 (316)
T KOG2289|consen  112 KPVHRGELWRLLTYMWLHAGIFHLLLNMLSQLFIGIPLEQVHGFLRIGLIYLAGGVAGSLLSSLF---------DP---N  179 (316)
T ss_pred             ChhhhchhHHHHHHHHHhcCHHHHHHHHHHHHhccccHHhhcCceEEeeehhhhhhhhHHHHHHh---------cc---C
Confidence            44567899999999999999999999999999999999999999999999999999999987432         44   4


Q ss_pred             cccccHHHHHHHHHHHHHhcCCCcceeEEeeeehhhHHHHHHH------HHHHhhCCChhHHHHHHHHHHhHHHhhccc
Q psy6649         140 HCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL------IIIYLLVPNASFKGHLSGILVGLTYTDTPI  212 (242)
Q Consensus       140 ~~~~G~Sg~v~all~~~~~~~p~~~~~i~~i~i~~~~~~~i~~------~~~~~~~~~~s~~~hl~G~l~G~~~~~~~~  212 (242)
                      ...+|+||++||++++.....-..+..     ++.+...+...      ..-....+..+..+|++|+..|..+++...
T Consensus       180 ~~sVGASggvfaLlgA~Ls~l~~Nw~~-----m~~~~~~l~~ll~Ii~i~l~~G~~~~~~~~~h~gg~~~G~~~~fil~  253 (316)
T KOG2289|consen  180 SISVGASGGVFALLGAHLSNLLTNWTI-----MKNKFAALRTLLIIIFINLDLGFAPYVDNFAHIGGLLAGFLLGFVLH  253 (316)
T ss_pred             CceecccHHHHHHHHHHHHHHHhhHHH-----hcchHHHHHHHHHHHHHHHhhccccceeccccccccCCCcchhHHhh
Confidence            558999999999998875332221111     22222211111      111123467788899999999998888633

>COG5291 Predicted membrane protein [Function unknown]

Probab=99.41  E-value=3.8e-13  Score=109.88  Aligned_cols=169  Identities=19%  Similarity=0.251  Sum_probs=113.1

Q ss_pred             CCCCchHHHHHHHHHHHHHHhhhcccccccchhcchhhhhccCccceeehhhhccCCh-hHHHHHHHHHHHhHHHHHHh-
Q psy6649          23 ADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDD-MHLYYNMVSLILKGRQLEKI-  100 (242)
Q Consensus        23 ~~~~p~vt~~li~~~v~v~~l~~~~~~~~~~~~~~~~~v~~~~q~wrllT~~f~H~~~-~hll~N~~~l~~~g~~lE~~-  100 (242)
                      ..++||+|+.+.++..++.++....-.+++...+..+..+++.|+||++|+....++. ...++|.+++|...+.+|+- 
T Consensus        16 ~~~IPPITRy~~ll~~a~til~~~~lvsPwy~ly~~pL~~k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS~~LE~g~   95 (313)
T COG5291          16 MLRIPPITRYMTLLISAVTILVYVDLVSPWYSLYYSPLFLKRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYSRMLEEGC   95 (313)
T ss_pred             cccCCcHHHHHHHHHHHHHHHHHHhhcCccceeeechhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHhccc
Confidence            4569999999999988888877666556667777777788889999999999988865 89999999999999999983 


Q ss_pred             hChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHHHHHHHhcCCCcceeEEe-eeehhhHH
Q psy6649         101 YGWG--KFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILN-INVKAIYA  177 (242)
Q Consensus       101 ~G~~--~fl~~~l~~~~~~~l~~~l~~~~~~~~~~~p~~~~~~~~G~Sg~v~all~~~~~~~p~~~~~i~~-i~i~~~~~  177 (242)
                      +++.  ++....+..+   .++. ..+.    +.+.+.     .+ -++...++-+.|...+|+.+++++| ++++.|++
T Consensus        96 f~~~lv~Y~~yl~~~~---l~i~-a~s~----I~gg~s-----aL-~tsf~a~ItY~WS~~N~~~~Iqf~g~i~v~gkYl  161 (313)
T COG5291          96 FNTSLVEYFWYLLVIS---LVIF-AISN----IYGGIS-----AL-GTSFSATITYIWSKRNPRAIIQFFGFISVPGKYL  161 (313)
T ss_pred             cCccHHHHHHHHHHHH---HHHH-HHHH----Hhcchh-----hh-cchhhhheeeeeeecCCceEEEEEEeeecchhhh
Confidence            4443  4444333222   1111 1111    111110     11 1222233345567788999999999 89999999


Q ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHHhHH
Q psy6649         178 PWFELIIIYLLVPNASFKGHLSGILVGLT  206 (242)
Q Consensus       178 ~~i~~~~~~~~~~~~s~~~hl~G~l~G~~  206 (242)
                      |++.+.+..+...+. ..-.+.|+.+|+.
T Consensus       162 P~Illgfsfl~~~g~-~i~~vlGf~~g~~  189 (313)
T COG5291         162 PFILLGFSFLSRRGI-SIDDVLGFVVGHL  189 (313)
T ss_pred             hHHHHHHHHHhcCCc-cceeeeeeeeccc
Confidence            999877666554332 2224445555443

>KOG2290|consensus

Probab=99.30  E-value=3.9e-13  Score=118.43  Aligned_cols=140  Identities=21%  Similarity=0.240  Sum_probs=102.6

Q ss_pred             cCccceeehhhhccCChhHHHHHHHHHHHhHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccc
Q psy6649          64 QRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAI  143 (242)
Q Consensus        64 ~~q~wrllT~~f~H~~~~hll~N~~~l~~~g~~lE~~~G~~~fl~~~l~~~~~~~l~~~l~~~~~~~~~~~p~~~~~~~~  143 (242)
                      ..|.+||+|+.|+|++..|++.++.+.+.+-+.+|+..|+.|...+|+++|+-||+..-+    +     -|   +.+.+
T Consensus       448 PdQfYRL~~SLFlHagviH~~vSi~FQm~vmrdlEkL~g~~riAIiy~~SGitGNLASAI----F-----lp---Y~~eV  515 (652)
T KOG2290|consen  448 PDQFYRLWLSLFLHAGVIHLLVSICFQMTVMRDLEKLAGWHRIAIIYFLSGITGNLASAI----F-----LP---YRAEV  515 (652)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcchhhheeeecccccccchhee----e-----ec---ccccc
Confidence            468999999999999999999999999999999999999999999999999999997521    1     23   45678


Q ss_pred             cHHHHHHHHHHHHHhcCCCcceeEEeeeehhh--HHHHHHHHHHHhhCCChhHHHHHHHHHHhHHHhhccccchhh
Q psy6649         144 GFSAVLFAMKTILTRLQPDAYQQILNINVKAI--YAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLD  217 (242)
Q Consensus       144 G~Sg~v~all~~~~~~~p~~~~~i~~i~i~~~--~~~~i~~~~~~~~~~~~s~~~hl~G~l~G~~~~~~~~~~~~~  217 (242)
                      |.+|..+|++....+-.-+.+ +++-=+..+.  ..+.++.+.+ .+.|.+|+++|+.|.+.|++.+..+++....
T Consensus       516 gPa~sQ~Gila~l~vEl~qs~-~il~~~w~a~~~Lia~~L~L~i-GliPWiDN~aHlfG~i~GLl~s~~~~PYi~F  589 (652)
T KOG2290|consen  516 GPAGSQFGILACLFVELFQSW-QILERPWRAFFHLIATLLVLCI-GLIPWIDNWAHLFGTIFGLLTSIIFLPYIDF  589 (652)
T ss_pred             CCcccccchHHHHHHHHHhhh-HhhhhHHHHHHHHHHHHHHHHh-ccccchhhHHHHHHHHHHHHHHHHhhccccc
Confidence            999999999876543222211 1110001111  1122222222 5679999999999999999999987775443

>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins

Probab=99.29  E-value=2.6e-12  Score=93.37  Aligned_cols=91  Identities=27%  Similarity=0.420  Sum_probs=82.1

Q ss_pred             ccceeehhhhccCChhHHHHHHHHHHHhHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccH
Q psy6649          66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGF  145 (242)
Q Consensus        66 q~wrllT~~f~H~~~~hll~N~~~l~~~g~~lE~~~G~~~fl~~~l~~~~~~~l~~~l~~~~~~~~~~~p~~~~~~~~G~  145 (242)
                      ..||++|+.|++.|+..+++|...++..|+.+|+.||+++++.++....+.+|+...+.....+...+++.+...+..|.
T Consensus         7 ~pWtl~T~~fve~~i~~~l~~~~~l~~~g~~lE~~WGs~E~lkFi~vv~~~tnl~~~~~~~~~y~i~~~~~~l~~~i~G~   86 (99)
T PF08551_consen    7 YPWTLFTAGFVETNIIGLLFSLLTLFYGGRYLEPIWGSREFLKFILVVNVITNLLTFLLYLLLYAITGNESYLFVPISGF   86 (99)
T ss_pred             ehHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCceeEEEecCc
Confidence            67999999999999999999999999999999999999999999999999999999888887777888887656677899


Q ss_pred             HHHHHHHHHHH
Q psy6649         146 SAVLFAMKTIL  156 (242)
Q Consensus       146 Sg~v~all~~~  156 (242)
                      .|++.|+++++
T Consensus        87 ~~~~~g~lVa~   97 (99)
T PF08551_consen   87 MGVLAGFLVAF   97 (99)
T ss_pred             HHhHhheEEEE
Confidence            99998887654

Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].

>KOG2890|consensus

Probab=99.21  E-value=3.4e-11  Score=101.51  Aligned_cols=153  Identities=17%  Similarity=0.152  Sum_probs=115.3

Q ss_pred             HHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHhhhcccc----cccchhcchhhhhccCccceeehhhhccCChhHHHHH
Q psy6649          11 LILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPW----STLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYN   86 (242)
Q Consensus        11 ~~~~~~~~~~~~~~~~p~vt~~li~~~v~v~~l~~~~~~----~~~~~~~~~~~v~~~~q~wrllT~~f~H~~~~hll~N   86 (242)
                      ..+-.||-......+.-++...+..+.+..|..+.....    ....+.+.|.+.+  ...|+++|+.|+..+.+..+.|
T Consensus         9 ~lp~~~~~~~~~l~n~~vvvs~ic~~tlf~yi~sf~~~t~~l~~~p~y~lvp~~~~--~~~WtliTs~fie~~vw~V~~s   86 (326)
T KOG2890|consen    9 NLPFSWQHLNALLLNLEVVVSAICVLTLFGYILSFGNFTILLATLPGYQLVPNALF--FFPWTLITSGFIELNVWDVLVS   86 (326)
T ss_pred             cchHHHHHhhhHhhhchhHHHHHHHHHHHHHHHHHHHhHHHHHhccccccCCcchh--hhhHHHHhcchhhhhHHHHHHH
Confidence            456666666655555555555555555566666544221    1112333444332  4789999999999999999999


Q ss_pred             HHHHHHhHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHHHHHHHhcCCCcce
Q psy6649          87 MVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQ  165 (242)
Q Consensus        87 ~~~l~~~g~~lE~~~G~~~fl~~~l~~~~~~~l~~~l~~~~~~~~~~~p~~~~~~~~G~Sg~v~all~~~~~~~p~~~~  165 (242)
                      ...+...|+.+|+.||+.+++.+|...-...++...+.+.+.+..++++.+...+.-|..|++-|+++++.+..|+..+
T Consensus        87 v~~L~v~G~~lEp~Wg~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~~~i~G~~gilaGilVa~kQllpd~~i  165 (326)
T KOG2890|consen   87 VLTLSVGGKFLEPNWGSLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLYIPIHGTTGILAGILVAWKQLLPDTII  165 (326)
T ss_pred             HHheeecceeeccCCCCHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEEEEeccchHHHHHHHHHHHHHcCceeE
Confidence            9999999999999999999999999888888887776666666678888777777889999999999999999999743

>KOG4463|consensus

Probab=98.75  E-value=5.1e-09  Score=86.70  Aligned_cols=181  Identities=16%  Similarity=0.226  Sum_probs=116.7

Q ss_pred             CCCCCchHHHHHHHHHHHHHHhhhcccccccchhcchhhhhc-cCccceeehhhhccCChhHHHHHHHHHHHhHHHHHHh
Q psy6649          22 GADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQ-QRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKI  100 (242)
Q Consensus        22 ~~~~~p~vt~~li~~~v~v~~l~~~~~~~~~~~~~~~~~v~~-~~q~wrllT~~f~H~~~~hll~N~~~l~~~g~~lE~~  100 (242)
                      +..++| ||+.+++....+.+........ ..+.+++...++ ++||||++-+.|+..|-..+.+-++.+|.+ +.+||.
T Consensus         7 g~~nmp-VTK~~~iT~~~~~vvagI~~~k-~~f~l~y~~~l~~y~qywrlL~~qF~~~n~~e~~~~l~I~Y~f-R~~ERl   83 (323)
T KOG4463|consen    7 GFHNMP-VTKAFVITSALFTVVAGIQGRK-SKFGLSYQDILEKYFQYWRLLMSQFAFSNTPELMFGLYILYYF-RVFERL   83 (323)
T ss_pred             cccccc-hHHHHHHHHHHHHHHHHhhhcc-cccccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHHH
Confidence            445554 7777776665555444333221 233445554444 489999999999999999999999988887 999999


Q ss_pred             hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHHHHHHHhcCCC-cceeEEeeeehhhHHHH
Q psy6649         101 YGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPD-AYQQILNINVKAIYAPW  179 (242)
Q Consensus       101 ~G~~~fl~~~l~~~~~~~l~~~l~~~~~~~~~~~p~~~~~~~~G~Sg~v~all~~~~~~~p~-~~~~i~~i~i~~~~~~~  179 (242)
                      .|+.||..+++.++..+.+....+..+.-..+++     -..++..|.+|+.++-+....|. .....+++.+.-|...+
T Consensus        84 LGShky~~fiv~s~~~~~l~~~il~~l~~~~~~n-----l~~~qp~~liFa~~~~~y~~ip~~~f~r~f~~~f~dkni~~  158 (323)
T KOG4463|consen   84 LGSHKYSVFIVFSGTVSLLLEVILLSLLKDTTAN-----LLTSQPYGLIFASFIPFYLDIPVSTFFRVFGVNFSDKNISF  158 (323)
T ss_pred             hccccceeehhHHHHHHHHHHHHHHHHHHHHHhh-----hhhcCCCceeeeeccceEEEecceeEEEeecccccccceee
Confidence            9999999999999999999988776654333332     22355556778887655555554 34455555555554222


Q ss_pred             HHH-HHHHhhCCC-------hhH----HHHHHHHHHhHHHhhc
Q psy6649         180 FEL-IIIYLLVPN-------ASF----KGHLSGILVGLTYTDT  210 (242)
Q Consensus       180 i~~-~~~~~~~~~-------~s~----~~hl~G~l~G~~~~~~  210 (242)
                      +.. .......++       ++|    .--++|++.|++|-..
T Consensus       159 i~~~G~a~sh~~NkredksaveWk~~i~f~~~gLi~~~~~~~~  201 (323)
T KOG4463|consen  159 IYLAGVALSHSSNKREDKSAVEWKRSIFFGICGLIAGSLYRLN  201 (323)
T ss_pred             ecccchhhhcCcccccccccceeecccccccchhhhhhHhhcc
Confidence            211 111112221       122    2256788888887654

>KOG2980|consensus

Probab=98.62  E-value=3.8e-08  Score=83.45  Aligned_cols=177  Identities=21%  Similarity=0.184  Sum_probs=118.6

Q ss_pred             chHHHHHHHHHHHHHHhhhcccc-c-ccchhcchhhhhccCccceeehhhhccCChhHHHHHHHHHHHhHH-HHHHhhCh
Q psy6649          27 PPATLGLVFLQSMVYLNIFRKPW-S-TLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGR-QLEKIYGW  103 (242)
Q Consensus        27 p~vt~~li~~~v~v~~l~~~~~~-~-~~~~~~~~~~v~~~~q~wrllT~~f~H~~~~hll~N~~~l~~~g~-~lE~~~G~  103 (242)
                      |-+...++..+++++.++..... . ...+...-+.  .....|.++++.|.|-+..|+-.|++.+..+.. .+-...|.
T Consensus       115 ~g~v~~ll~~n~~vf~lWrv~~~~~~~~~~mls~~~--~~t~~w~i~~s~Fsh~~a~h~g~~~~~~~~y~~~a~~~~~~~  192 (310)
T KOG2980|consen  115 NGVVFGLLIANAFVFTLWRVPQKQFTMIPWMLSRNA--YKTGCWKIILSTFSHYSALHLGPNMLVLKSYLAGALKGSLGF  192 (310)
T ss_pred             CcchhHHHHHHHHHHHHHHhcchhhhhhhHHhhccc--ccccceeEEeehhcchhHhhhcHHHHHHHHHhcccccCCcch
Confidence            33778899999999988876532 1 2233332221  234567899999999999999999998887766 66667777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHHHHHHHhcCCCcceeEEe-eeehhhHHHHHHH
Q psy6649         104 GKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILN-INVKAIYAPWFEL  182 (242)
Q Consensus       104 ~~fl~~~l~~~~~~~l~~~l~~~~~~~~~~~p~~~~~~~~G~Sg~v~all~~~~~~~p~~~~~i~~-i~i~~~~~~~i~~  182 (242)
                      ..+..+|+.++..+.....      ..  ..+..+..+.+|+||.++++.++.+.+.|+.+..+.+ ++++......+..
T Consensus       193 ~~~~AlylSa~~~~~~i~~------~~--~v~~~~~gp~LGAsGav~ai~a~~~~lfP~~~~~i~f~~~v~~ga~~~~~~  264 (310)
T KOG2980|consen  193 SSFFALYLSAGVKGLFISV------KD--KVPTSWAGPSLGASGAVYAILALDCTLFPKTTLYILFVFPVPAGAGLAFKA  264 (310)
T ss_pred             hhcccceeccccccceeEe------ec--cccccccccccccchHHHHHHHHHhhcCcCcceeEEEeecccccchhHHHH
Confidence            7788888633333333210      00  0122224557999999999999999999998888777 6777654322211


Q ss_pred             HH-HH-----hhCCChhHHHHHHHHHHhHHHhhcccc
Q psy6649         183 II-IY-----LLVPNASFKGHLSGILVGLTYTDTPIG  213 (242)
Q Consensus       183 ~~-~~-----~~~~~~s~~~hl~G~l~G~~~~~~~~~  213 (242)
                      .. ..     +.....++.+|++|-+.|..++...-+
T Consensus       265 i~~~~~a~~~l~~~~~n~~Ah~~gsl~Gv~va~~~~~  301 (310)
T KOG2980|consen  265 IAAYDFAGLILGWGFFNHAAHLSGSLFGVVVATYLWA  301 (310)
T ss_pred             HHHhhhcceeeccccchhHhhhcchHHHHHHHHHHHH
Confidence            11 11     112345677999999999998876543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	242
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	3e-13
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	4e-11

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A* Length = 181

 Score = 64.6 bits (158), Expect = 3e-13
 Identities = 28/182 (15%), Positives = 62/182 (34%), Gaps = 16/182 (8%)

Query: 27  PPATLGLVFLQSMVYL-NIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYY 85
            P T  ++    +V++          +           + ++ R    A  H   MH+ +
Sbjct: 4   GPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILF 63

Query: 86  NMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGF 145
           N++     G  +EK  G GK + + +   + +       +   F              G 
Sbjct: 64  NLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWF-------------GGL 110

Query: 146 SAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIY--LLVPNASFKGHLSGILV 203
           S V++A+   +        Q  + +    I      ++  +  L   + +   H++G+ V
Sbjct: 111 SGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAV 170

Query: 204 GL 205
           GL
Sbjct: 171 GL 172

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A Length = 196

 Score = 59.3 bits (144), Expect = 4e-11
 Identities = 33/183 (18%), Positives = 60/183 (32%), Gaps = 18/183 (9%)

Query: 27  PPATLGLVFLQSMVY-LNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYY 85
              TL L  L  ++Y           + +        Q  +  R I     H  ++H+ +
Sbjct: 9   GKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILF 68

Query: 86  NMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGF 145
           N+    + G  +E+ +G  K L L +  +  T      ++   F              G 
Sbjct: 69  NLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPAF-------------FGL 115

Query: 146 SAVLFAMK---TILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGIL 202
           S V++A+     I  +L    +          +       I   L         H+SG++
Sbjct: 116 SGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLLVGIALGFISP-LFGVEMGNAAHISGLI 174

Query: 203 VGL 205
           VGL
Sbjct: 175 VGL 177

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	242
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	99.95
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	99.94

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*

Probab=99.95  E-value=9.6e-28  Score=192.83  Aligned_cols=172  Identities=17%  Similarity=0.198  Sum_probs=130.5

Q ss_pred             CCCchHHHHHHHHHHHHHHhhhccccc--ccchhcchhhhhccCccceeehhhhccCChhHHHHHHHHHHHhHHHHHHhh
Q psy6649          24 DTIPPATLGLVFLQSMVYLNIFRKPWS--TLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIY  101 (242)
Q Consensus        24 ~~~p~vt~~li~~~v~v~~l~~~~~~~--~~~~~~~~~~v~~~~q~wrllT~~f~H~~~~hll~N~~~l~~~g~~lE~~~  101 (242)
                      .+.||+|+.++++|+++|++....+..  .+.+.++|+. .+++|+||++|+.|+|.|+.|+++||+.++.+|+.+|+.+
T Consensus         1 ~~~~pvt~~li~~~v~vf~~~~~~~~~~~~~~~~~~p~~-~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~   79 (181)
T 2xov_A            1 ERAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDP-TLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRL   79 (181)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSG-GGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHhCcHHHHHhhcCChhh-ccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHh
Confidence            367999999999999999988665431  2344556654 4678999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHHHHHHH---hcCCCcceeEEeeeehhhHHH
Q psy6649         102 GWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILT---RLQPDAYQQILNINVKAIYAP  178 (242)
Q Consensus       102 G~~~fl~~~l~~~~~~~l~~~l~~~~~~~~~~~p~~~~~~~~G~Sg~v~all~~~~---~~~p~~~~~i~~i~i~~~~~~  178 (242)
                      |++|++.+|+.+++.+++...+.        ..+     ..+|+||+++|++++..   ...|+.+..   ++.+.....
T Consensus        80 G~~~fl~~yl~~~i~~~l~~~~~--------~~~-----~~vGaSGai~gl~g~~~~~~~~~p~~~~~---l~~~~~~~~  143 (181)
T 2xov_A           80 GSGKLIVITLISALLSGYVQQKF--------SGP-----WFGGLSGVVYALMGYVWLRGERDPQSGIY---LQRGLIIFA  143 (181)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHH--------HCS-----CCCCSHHHHHHHHHHHHHHHHHCGGGSCC---CCHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHh--------cCC-----CceeHHHHHHHHHHHHHHHHhhCcCceee---eHHHHHHHH
Confidence            99999999999999999976432        122     27899999999998754   356766532   222222221


Q ss_pred             HHHHHHHHhh---CCChhHHHHHHHHHHhHHHhhcccc
Q psy6649         179 WFELIIIYLL---VPNASFKGHLSGILVGLTYTDTPIG  213 (242)
Q Consensus       179 ~i~~~~~~~~---~~~~s~~~hl~G~l~G~~~~~~~~~  213 (242)
                      .+ .....+.   .+++|+.+|++|+++|.+++...+|
T Consensus       144 ~~-~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~  180 (181)
T 2xov_A          144 LI-WIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVDSL  180 (181)
T ss_dssp             HH-HHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHhccccchHHHHHHHHHHHHHHHHHHhc
Confidence            11 1122222   3689999999999999999887665

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A

Probab=99.94  E-value=2.2e-27  Score=192.98  Aligned_cols=173  Identities=18%  Similarity=0.196  Sum_probs=128.8

Q ss_pred             CCCchHHHHHHHHHHHHHHhhhccccc--ccchhcchhhhhccCccceeehhhhccCChhHHHHHHHHHHHhHHHHHHhh
Q psy6649          24 DTIPPATLGLVFLQSMVYLNIFRKPWS--TLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIY  101 (242)
Q Consensus        24 ~~~p~vt~~li~~~v~v~~l~~~~~~~--~~~~~~~~~~v~~~~q~wrllT~~f~H~~~~hll~N~~~l~~~g~~lE~~~  101 (242)
                      .+.||+|..++++|+++|++....+..  .+.+.+.|+.+ .++|+||++|+.|+|.|+.|+++||+.++.+|..+|+.+
T Consensus         6 ~~~~pvt~~li~~~v~vfll~~~~~~~~~~~~~~~~p~~~-~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~   84 (196)
T 2nr9_A            6 AQQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEE-QDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTF   84 (196)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGG-GGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCHhhc-ccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHH
Confidence            467899999999999999988765431  23455666654 678999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHHHHHHHh---cCCCcceeEEeeeehhhHHH
Q psy6649         102 GWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTR---LQPDAYQQILNINVKAIYAP  178 (242)
Q Consensus       102 G~~~fl~~~l~~~~~~~l~~~l~~~~~~~~~~~p~~~~~~~~G~Sg~v~all~~~~~---~~p~~~~~i~~i~i~~~~~~  178 (242)
                      |++|++.+|+.+++.+++.+.+.        ..+     ..+|+||+++|++++...   ..|+.    +.++.+.....
T Consensus        85 G~~~~l~~yl~~~~~~~l~~~~~--------~~~-----~~vGaSGai~gl~g~~~~~~~~~~~~----~~~~~~~~~~~  147 (196)
T 2nr9_A           85 GSVKLLMLYVVASAITGYVQNYV--------SGP-----AFFGLSGVVYAVLGYVFIRDKLNHHL----FDLPEGFFTML  147 (196)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHH--------HCS-----CCCCSHHHHHHHHHHHHHHHHSSTTS----CCCCCSSTTTT
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHh--------cCC-----CeeeHHHHHHHHHHHHHHHHHhcchh----hcchHHHHHHH
Confidence            99999999999999999876432        122     278999999999986543   23332    11222222211


Q ss_pred             --HHHHHHHHh-hCCChhHHHHHHHHHHhHHHhhccccc
Q psy6649         179 --WFELIIIYL-LVPNASFKGHLSGILVGLTYTDTPIGW  214 (242)
Q Consensus       179 --~i~~~~~~~-~~~~~s~~~hl~G~l~G~~~~~~~~~~  214 (242)
                        ++...+... ..+++|+.+|++|+++|.+++....++
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~~  186 (196)
T 2nr9_A          148 LVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSKL  186 (196)
T ss_dssp             TTTTTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence              111111111 234899999999999999999887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	242
d3b45a1	180	f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId:	5e-10
d2nr9a1	189	f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilu	5e-08

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]} Length = 180

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

 Score = 54.7 bits (131), Expect = 5e-10
 Identities = 28/184 (15%), Positives = 62/184 (33%), Gaps = 16/184 (8%)

Query: 27  PPATLGLVFLQSMVYL-NIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYY 85
            P T  ++    +V++          +           + ++ R    A  H   MH+ +
Sbjct: 4   GPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILF 63

Query: 86  NMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGF 145
           N++     G  +EK  G GK + + +   + +       +   F              G 
Sbjct: 64  NLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWF-------------GGL 110

Query: 146 SAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIY--LLVPNASFKGHLSGILV 203
           S V++A+   +        Q  + +    I      ++  +  L   + +   H++G+ V
Sbjct: 111 SGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAV 170

Query: 204 GLTY 207
           GL  
Sbjct: 171 GLAM 174

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]} Length = 189

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

 Score = 49.4 bits (117), Expect = 5e-08
 Identities = 32/182 (17%), Positives = 65/182 (35%), Gaps = 12/182 (6%)

Query: 27  PPATLGLVFLQSMVYL-NIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYY 85
              TL L  L  ++Y+          + +        Q  +  R I     H  ++H+ +
Sbjct: 6   GKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILF 65

Query: 86  NMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGF 145
           N+    + G  +E+ +G  K L L +  +  T      ++   F+     S + +  +G+
Sbjct: 66  NLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPAFF---GLSGVVYAVLGY 122

Query: 146 SAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGL 205
             +   +   L  L    +  +L        +P F                H+SG++VGL
Sbjct: 123 VFIRDKLNHHLFDLPEGFFTMLLVGIALGFISPLF--------GVEMGNAAHISGLIVGL 174

Query: 206 TY 207
            +
Sbjct: 175 IW 176

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	242
d2nr9a1	189	GlpG homolog HI0618 {Haemophilus influenzae [TaxId	99.94
d3b45a1	180	GlpG {Escherichia coli [TaxId: 562]}	99.94

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

Probab=99.94  E-value=1.2e-27  Score=191.61  Aligned_cols=177  Identities=17%  Similarity=0.154  Sum_probs=131.6

Q ss_pred             CCCchHHHHHHHHHHHHHHhhhcccc-cccchhcchhhhhccCccceeehhhhccCChhHHHHHHHHHHHhHHHHHHhhC
Q psy6649          24 DTIPPATLGLVFLQSMVYLNIFRKPW-STLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYG  102 (242)
Q Consensus        24 ~~~p~vt~~li~~~v~v~~l~~~~~~-~~~~~~~~~~~v~~~~q~wrllT~~f~H~~~~hll~N~~~l~~~g~~lE~~~G  102 (242)
                      .+.+|+|..++++|+++|++...... ..+.....|....+++|+||++|+.|+|.|+.|+++|++.++.+|..+|+.+|
T Consensus         3 ~~~~pvt~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~wrl~T~~f~H~~~~Hl~~N~~~l~~~g~~~E~~~G   82 (189)
T d2nr9a1           3 AQQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFG   82 (189)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHccccccccCchHHhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57789999999999999988876433 33455555666667899999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHHHHHHHhcCCCcceeEEeeeehhhH--HHHH
Q psy6649         103 WGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIY--APWF  180 (242)
Q Consensus       103 ~~~fl~~~l~~~~~~~l~~~l~~~~~~~~~~~p~~~~~~~~G~Sg~v~all~~~~~~~p~~~~~i~~i~i~~~~--~~~i  180 (242)
                      +.+++.+|+.+++++++.....       .      ..+.+|+||+++|++++.....+..+... ..+.+...  ...+
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~~~-------~------~~~~vGaSG~v~gl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  148 (189)
T d2nr9a1          83 SVKLLMLYVVASAITGYVQNYV-------S------GPAFFGLSGVVYAVLGYVFIRDKLNHHLF-DLPEGFFTMLLVGI  148 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-------H------CSCCCCSHHHHHHHHHHHHHHHHSSTTSC-CCCCSSTTTTTTTT
T ss_pred             HHhhhhHHHHHHHHHHHHHHhc-------C------CCCcccchHHHHHHHHHHHHHHHHhhhHh-ccHHHHHHHHHHHH
Confidence            9999999999999999875321       1      22368999999999877665444433221 11111111  1111


Q ss_pred             -HHHHHHhhCCChhHHHHHHHHHHhHHHhhccccc
Q psy6649         181 -ELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGW  214 (242)
Q Consensus       181 -~~~~~~~~~~~~s~~~hl~G~l~G~~~~~~~~~~  214 (242)
                       .........+++|+.+|++|+++|.++++...|.
T Consensus       149 ~~~~~~~~~~~~v~~~aHl~G~l~G~~~g~~~~~~  183 (189)
T d2nr9a1         149 ALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSKL  183 (189)
T ss_dssp             THHHHSCSSCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHcc
Confidence             1122223357899999999999999999887653

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=4.6e-27  Score=186.75  Aligned_cols=174  Identities=16%  Similarity=0.133  Sum_probs=128.7

Q ss_pred             CCCchHHHHHHHHHHHHHHhhhcccc-cccchhcchhhhhccCccceeehhhhccCChhHHHHHHHHHHHhHHHHHHhhC
Q psy6649          24 DTIPPATLGLVFLQSMVYLNIFRKPW-STLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYG  102 (242)
Q Consensus        24 ~~~p~vt~~li~~~v~v~~l~~~~~~-~~~~~~~~~~~v~~~~q~wrllT~~f~H~~~~hll~N~~~l~~~g~~lE~~~G  102 (242)
                      +|.+|+|..++++|+++|+.....+. ...++...+....+++|+||++|+.|+|.|+.|+++|++.++.+|+.+|+.+|
T Consensus         1 ~r~~pvT~~li~i~~~vf~~~~~~~~~~~~~~~~~~~~~~~~g~~wrl~T~~f~H~~~~Hl~~N~~~l~~~G~~lE~~~G   80 (180)
T d3b45a1           1 ERAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLG   80 (180)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSGGGTTCGGGGTGGGGCCCSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHhCcHHHHHHHcCCCcccccCchHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence            47899999999999999987765432 33344444444457899999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHHHHHHHhcCCCcceeEEeeeehhhHHHHHH-
Q psy6649         103 WGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE-  181 (242)
Q Consensus       103 ~~~fl~~~l~~~~~~~l~~~l~~~~~~~~~~~p~~~~~~~~G~Sg~v~all~~~~~~~p~~~~~i~~i~i~~~~~~~i~-  181 (242)
                      ++|++.+|+.+++.+++..++.        .+     ....|+||+++|+++......++.+......+........+. 
T Consensus        81 ~~~~~~~~~~~~~~g~l~~~~~--------~~-----~~~~G~sg~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
T d3b45a1          81 SGKLIVITLISALLSGYVQQKF--------SG-----PWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWI  147 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH--------HC-----SCCCCSHHHHHHHHHHHHHHHHHCGGGSCCCCHHHHHHHHHHH
T ss_pred             chhheeeeeHHHHHHHHHHHHH--------hc-----cccccccchHHHHHHHHHHHhhhcchhHHhhHHHHHHHHHHHH
Confidence            9999999999999999976432        12     236899999999988776554443322222221111122111 


Q ss_pred             -HHHHHhhCCChhHHHHHHHHHHhHHHhhc
Q psy6649         182 -LIIIYLLVPNASFKGHLSGILVGLTYTDT  210 (242)
Q Consensus       182 -~~~~~~~~~~~s~~~hl~G~l~G~~~~~~  210 (242)
                       ........+++++.+|++|+++|.++++.
T Consensus       148 ~~~~~~~~~~~v~~~aHlgG~l~G~~~~~~  177 (180)
T d3b45a1         148 VAGWFDLFGMSMANGAHIAGLAVGLAMAFV  177 (180)
T ss_dssp             HHHHTTSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCchHHHHHHHHHHHHHHHHHH
Confidence             12222345789999999999999999874