Psyllid ID: psy6665

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420
Protein Sequence
MGSRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSGYYTQLIMTGQIEKSLIPVFCILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVLHWRTVAWLSLAYILIPSPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGSRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIEKSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFLPETHGRTLLEIEEYFETSCVYACSKKRRASAAILQNQSPKIVVSKETTD
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccHHHccccccccccHHHcHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHcHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccccHHHHHHHHHHHcccccEEccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHEHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccHHHHHcccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccHHHHHccccHHHHHHHHHHHHHHHHHHcccEEEEEcHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEHcHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHEccccccccHHHHHHHHHccccccccccccccHHHcccccHHHcccccccc
Coil and Loop (DISEMBL)
MGSRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSGYYTQLIMTGQIEKSLIPVFCILFYVAISVIamgpspaiVYITEVarpdlrgalicigpsitSLGMVIVYALGAVLHWRTVAWLSLAYIlipspvwllnKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGSRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIEKSLIPVFCILFYVAISVIGMLsipwtmtaeifPLEIRGIAQGLTFCLAHILMFFALqyypwfkdsvggsAMVQWFFALISVISIVYVYIFlpethgrtLLEIEEYFETSCVYACSKKRRASAAIlqnqspkivvskettd
Flexible Loop (DISEMBL)
MGSRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSGYYTQLIMTGQIEKSLIPVFCILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVLHWRTVAWLSLAYILIPSPVWLLNKGRANQALKSLKYLARNYKEVKNkeqelkkmnstkenqsLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGSRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIEKSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFLPETHGRTLLEIEEYFETSCVYACSKKRRASaailqnqspkivvskettd
Low Complexity Region (SEG)
MGSRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSGYYTQLIMTGQIEKSLIPVFCILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVLHWRTVAWLSLAYILIPSPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGSRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIEKSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALisvisivyvyiFLPETHGRTLLEIEEYFETSCVYACSKKRRASAAILQNQSPKIVVSKETTD
Disordered region (IsUnstruct)
*****NVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSGYYTQLIMTGQIEKSLIPVFCILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVLHWRTVAWLSLAYILIPSPVWLLNKGRANQALKSLKYLARNY***********************ARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGSRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIEKSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFLPETHGRTLLEIEEYFETSCVYACSKKR**********************
Disordered Region (DISOPRED)
MGSR*NVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSGYYTQLIMTGQIEKSLIPVFCILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVLHWRTVAWLSLAYILIPSPVWLLNKGRANQALKSLKYLARNYKEVKNKEQ********************MVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGSRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIEKSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFLPETHGRTLLEIE*************************************
Disordered Region (DISEMBL)
MGSRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSGYYTQLIMTGQIEKSLIPVFCILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVLHWRTVAWLSLAYILIPSPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGSRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIEKSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFLPETHGRTLLEIEEYFETSCVYACSKKRRASAAILQNQSPKI********
Disordered Region (DISPRO)
*****NVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSGYYTQLIMTGQIEKSLIPVFCILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVLHWRTVAWLSLAYILIPSPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGSRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIEKSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFLPETHGRTLLEIEEYFETS*******************************
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSGYYTQLIMTGQIEKSLIPVFCILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVLHWRTVAWLSLAYILIPSPVWLLNKGRANQALKSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGSRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIEKSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFLPETHGRTLLEIEEYFETSCVYACSKKRRASAAILQNQSPKIVVSKETTD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	420	2.2.26 [Sep-21-2011]
Q8MKK4	488	Facilitated trehalose tra	no	N/A	0.692	0.596	0.273	1e-31
B4HNS1	488	Facilitated trehalose tra	N/A	N/A	0.692	0.596	0.264	2e-30
B0WC46	517	Facilitated trehalose tra	N/A	N/A	0.719	0.584	0.256	2e-30
B4QBN3	488	Facilitated trehalose tra	N/A	N/A	0.692	0.596	0.264	3e-30
Q17NV8	806	Facilitated trehalose tra	N/A	N/A	0.690	0.359	0.268	8e-30
Q7PIR5	793	Facilitated trehalose tra	no	N/A	0.690	0.365	0.265	2e-29
A9ZSY2	502	Facilitated trehalose tra	N/A	N/A	0.697	0.583	0.269	4e-29
B4P624	856	Facilitated trehalose tra	N/A	N/A	0.685	0.336	0.273	7e-29
B4LPX5	911	Facilitated trehalose tra	N/A	N/A	0.690	0.318	0.262	2e-28
Q291H8	868	Facilitated trehalose tra	no	N/A	0.685	0.331	0.276	2e-28

>sp|Q8MKK4|TRE12_DROME Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila melanogaster GN=Tret1-2 PE=2 SV=1

 Score =  137 bits (346), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 155/325 (47%), Gaps = 34/325 (10%)

Query: 92  VYITEVARPDLRGALICIGPSITSLGMVIVYALGAVLHWRTVAWLSLAY--------ILI 143
           VY+ E  +P++RG L  +  ++ ++G+++ Y  G+ ++W  +A+L  A         I+I
Sbjct: 145 VYLGETLQPEVRGTLGLLPTALGNIGILVCYVAGSFMNWSMLAFLGAALPVPFLILMIII 204

Query: 144 P-SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMA 202
           P +P W +N+G+  +A K+LK+L     +V+ + +EL +  +  + Q+     +++    
Sbjct: 205 PETPRWFVNRGQEERARKALKWLRGKEADVEPELKELMQSQADADRQATQNTCLELFKR- 263

Query: 203 TGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGSRMNVYLATVLVGVVRMVFGLLTS 262
             +KPL +   L   QQ +GI   IFY VQ  +D GS ++  L+T++VGVV      +  
Sbjct: 264 NNLKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDSNLSTIIVGVVNFFATFMGI 323

Query: 263 QLLRTYGRRSLTMFSQI-----------------------EKSLIPVFCILFYVAISVIG 299
            L+   GR+ L   S I                           +P+ C + Y+    +G
Sbjct: 324 ILIDRLGRKILLYVSDIAMIVTLSILGGFFYCKAHGPDVSHLGWLPLTCFVIYILGFSLG 383

Query: 300 MLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALI 359
              IPW M  EI P +IRG A  +         F   + +     ++G      W F  I
Sbjct: 384 FGPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQDLTVAMGAHGAF-WLFGAI 442

Query: 360 SVISIVYVYIFLPETHGRTLLEIEE 384
            ++ + +V IF+PET G++L EIE 
Sbjct: 443 CIVGLFFVIIFVPETRGKSLEEIER 467

Fails to transport trehalose.
Drosophila melanogaster (taxid: 7227)

>sp|B4HNS1|TRE12_DROSE Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila sechellia GN=Tret1-2 PE=3 SV=1

 Score =  134 bits (336), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 157/325 (48%), Gaps = 34/325 (10%)

Query: 92  VYITEVARPDLRGALICIGPSITSLGMVIVYALGAVLHWRTVAWLSLAY--------ILI 143
           VY+ E  +P++RG L  +  ++ ++G+++ Y  G+ ++W  +A+L  A         I+I
Sbjct: 145 VYLGETLQPEVRGTLGLLPTALGNIGILVCYVAGSFMNWSILAFLGAALPVPFLILMIII 204

Query: 144 P-SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMA 202
           P +P W +N+G+  +A K+LK+L     +V+ + ++L +  +  ++Q+     +++    
Sbjct: 205 PETPRWFVNRGQEERARKALKWLRGKEADVEPELKDLMQSQAEADSQATRNTCLELFKRI 264

Query: 203 TGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGSRMNVYLATVLVGVVRMVFGLLTS 262
             +KPL +   L   QQ +GI   IFY VQ  +D GS ++  L T++VG+V      +  
Sbjct: 265 N-LKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDSNLCTIIVGIVNFFATFMGI 323

Query: 263 QLLRTYGRRSLTMFSQIEKSL-----------------------IPVFCILFYVAISVIG 299
            L+   GR+ L   S I   L                       +P+ C + Y+    +G
Sbjct: 324 ILIDRLGRKILLYVSDIAMILTLSILGGFFYCKAHGPDVSHLGWLPLSCFVIYILGFSLG 383

Query: 300 MLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALI 359
              IPW M  EI P +IRG A  +         F   + +     ++G      W F ++
Sbjct: 384 FGPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQDLTVAMGPHGAF-WLFGVV 442

Query: 360 SVISIVYVYIFLPETHGRTLLEIEE 384
            ++ + +V I++PET G++L EIE 
Sbjct: 443 CIVGLFFVIIYVPETRGKSLEEIER 467

Fails to transport trehalose.

Drosophila sechellia (taxid: 7238)

>sp|B0WC46|TRET1_CULQU Facilitated trehalose transporter Tret1 OS=Culex quinquefasciatus GN=Tret1 PE=3 SV=1

 Score =  133 bits (335), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 161/343 (46%), Gaps = 41/343 (11%)

Query: 92  VYITEVARPDLRGALICIGPSITSLGMVIVYALGAVLHWRTVAWLS---------LAYIL 142
           VY+ E  +P++RG L  +  +  ++G+++ +  G  + W  +A+L          L +++
Sbjct: 173 VYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGNYMDWSELAFLGATLPVPFLILMFLI 232

Query: 143 IPSPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMA 202
             +P W +++GR ++A K+L++L     +V  + + + K +   E  +  + ++ ++   
Sbjct: 233 PETPRWYVSRGRDDRARKALQWLRGKKADVDPELKGIIKSHQDAERHASQSAMLDLLK-K 291

Query: 203 TGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGSRMNVYLATVLVGVVRMVFGLLTS 262
           T +KPLL+   L   QQL+GI   IFY VQ  +D GS ++  L T++VGVV  +   + +
Sbjct: 292 TNLKPLLISLGLMFFQQLSGINAVIFYTVQIFQDAGSTIDENLCTIIVGVVNFIATFIAT 351

Query: 263 QLLRTYGRRSLTMFSQI-----------------------EKSLIPVFCILFYVAISVIG 299
            L+   GR+ L   S I                           +P+   + +V    +G
Sbjct: 352 LLIDRLGRKMLLYISDIAMIITLMTLGGFFYVKNNGGDVSHIGWLPLASFVIFVLGFSLG 411

Query: 300 MLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALI 359
              IPW M  EI P +IRG A  +         F   + +     S+G      W F  +
Sbjct: 412 FGPIPWLMMGEILPGKIRGSAASVATAFNWSCTFVVTKTFADIIASIGTHGAF-WMFGSV 470

Query: 360 SVISIVYVYIFLPETHGRTLLEIEEYFETSCVYACSKKRRASA 402
            V+ +V+V +++PET G++L +IE          C + RR S+
Sbjct: 471 CVVGLVFVIMYVPETQGKSLEDIERKM-------CGRVRRMSS 506

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Culex quinquefasciatus (taxid: 7176)

>sp|B4QBN3|TRE12_DROSI Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila simulans GN=Tret1-2 PE=3 SV=1

 Score =  133 bits (334), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 156/325 (48%), Gaps = 34/325 (10%)

Query: 92  VYITEVARPDLRGALICIGPSITSLGMVIVYALGAVLHWRTVAWLSLAY--------ILI 143
           VY+ E  +P++RG L  +  ++ ++G+++ Y  G+ ++W  +A+L  A         I+I
Sbjct: 145 VYLGETLQPEVRGTLGLLPTALGNIGILVCYVAGSFMNWSMLAFLGAALPVPFLILMIII 204

Query: 144 P-SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMA 202
           P +P W +N+G+  +A K+LK+L     +V+ + ++L +  +  ++Q+     +++    
Sbjct: 205 PETPRWFVNRGQEERARKALKWLRGKEADVEPELKDLMQSQAEADSQARRNTCLELFKRI 264

Query: 203 TGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGSRMNVYLATVLVGVVRMVFGLLTS 262
             +KPL +   L   QQ +GI   IFY VQ  +D GS ++  L T++VG+V      +  
Sbjct: 265 N-LKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDSNLCTIIVGIVNFFATFMGI 323

Query: 263 QLLRTYGRRSLTMFSQIEKSL-----------------------IPVFCILFYVAISVIG 299
            L+   GR+ L   S I   L                       +P+ C + Y+    +G
Sbjct: 324 LLIDRLGRKILLYISDIAMILTLSILGGFFYCKAHGPDVSHLGWLPLTCFVIYILGFSLG 383

Query: 300 MLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALI 359
              IPW M  EI P +IRG A  +         F   + +     ++G      W F ++
Sbjct: 384 FGPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQDLTVAMGAHGAF-WLFGVV 442

Query: 360 SVISIVYVYIFLPETHGRTLLEIEE 384
            ++ + +V I +PET G++L EIE 
Sbjct: 443 CIVGLFFVIICVPETRGKSLEEIER 467

Fails to transport trehalose.

Drosophila simulans (taxid: 7240)

>sp|Q17NV8|TRET1_AEDAE Facilitated trehalose transporter Tret1 OS=Aedes aegypti GN=Tret1 PE=3 SV=1

 Score =  131 bits (330), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 155/324 (47%), Gaps = 34/324 (10%)

Query: 92  VYITEVARPDLRGALICIGPSITSLGMVIVYALGAVLHWRTVAWLSLA--------YILI 143
           VY+ E  +P++RG L  +  +  ++G+++ +  G  + W  +A+L  A          LI
Sbjct: 462 VYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGKYMDWSGLAFLGAALPIPFLLLMFLI 521

Query: 144 P-SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMA 202
           P +P W +++GR ++A K+L++L     +V  + + + K +   E  +  + ++ ++  A
Sbjct: 522 PETPRWYVSRGRDDRARKALQWLRGKKADVDPELKGIIKSHQDAERHASQSAMLDLMKKA 581

Query: 203 TGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGSRMNVYLATVLVGVVRMVFGLLTS 262
             +KPLL+   L   QQL+GI   IFY VQ  +D GS ++  L T++VGVV  +   + +
Sbjct: 582 N-LKPLLISLGLMFFQQLSGINAVIFYTVQIFQDAGSTIDENLCTIIVGVVNFIATFIAT 640

Query: 263 QLLRTYGRRSLTMFSQI-----------------------EKSLIPVFCILFYVAISVIG 299
            L+   GR+ L   S +                       +   +P+   + YV    +G
Sbjct: 641 MLIDRLGRKMLLYISDVAMIITLMTLGGFFYVKNSGQDVSQVGWLPLAAFVIYVLGFSLG 700

Query: 300 MLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALI 359
              IPW M  EI P +IRG A  +         F   + +    +++G      W F  I
Sbjct: 701 FGPIPWLMMGEILPGKIRGSAASVATAFNWSCTFIVTKTFADIINAIGTHGTF-WMFGSI 759

Query: 360 SVISIVYVYIFLPETHGRTLLEIE 383
            VI + +V  ++PET G++L +IE
Sbjct: 760 CVIGLAFVIFYVPETQGKSLEDIE 783

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Aedes aegypti (taxid: 7159)

>sp|Q7PIR5|TRET1_ANOGA Facilitated trehalose transporter Tret1 OS=Anopheles gambiae GN=Tret1 PE=1 SV=3

 Score =  130 bits (328), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 156/324 (48%), Gaps = 34/324 (10%)

Query: 92  VYITEVARPDLRGALICIGPSITSLGMVIVYALGAVLHWRTVAWLSLA--------YILI 143
           VY+ E  +P++RG L  +  +  ++G+++ +  G  L W  +A+L  A          LI
Sbjct: 449 VYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGKYLDWSGLAFLGAALPIPFLLLMFLI 508

Query: 144 P-SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMA 202
           P +P W +++ R ++A K+L++L     +V+ + + + K +   E  + S+ ++ ++  A
Sbjct: 509 PETPRWYVSRNREDRARKALQWLRGRKADVEPELKGISKSHQDAERHASSSAMLDLLNKA 568

Query: 203 TGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGSRMNVYLATVLVGVVRMVFGLLTS 262
             +KPLL+   L   QQL+GI   IFY VQ  +  GS ++  L T++VGVV  +   + +
Sbjct: 569 N-LKPLLISLGLMFFQQLSGINAVIFYTVQIFQSAGSTIDEKLCTIIVGVVNFIATFIAT 627

Query: 263 QLLRTYGRRSLTMFSQI-----------------------EKSLIPVFCILFYVAISVIG 299
            L+   GR+ L   S +                       E   +P+   + +V    +G
Sbjct: 628 VLIDRLGRKILLYISDVAMIITLMTLGTFFYMKNNGDDVSEIGWLPLAAFVVFVVGFSLG 687

Query: 300 MLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALI 359
              IPW M  EI P +IRG A  +         F   + +     S+G      W F  I
Sbjct: 688 FGPIPWLMMGEILPGKIRGSAASVATAFNWSCTFVVTKTFADITASIGNHGAF-WMFGSI 746

Query: 360 SVISIVYVYIFLPETHGRTLLEIE 383
            ++ +++V +++PET G++L +IE
Sbjct: 747 CIVGLLFVIVYVPETQGKSLEDIE 770

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Anopheles gambiae (taxid: 7165)

>sp|A9ZSY2|TRET1_APILI Facilitated trehalose transporter Tret1 OS=Apis mellifera ligustica GN=Tret1 PE=1 SV=1

 Score =  129 bits (325), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 151/326 (46%), Gaps = 33/326 (10%)

Query: 92  VYITEVARPDLRGALICIGPSITSLGMVIVYALGAVLHWRTVAWLS---------LAYIL 142
           VY+ E  +P++RG+L  +     + G+++ +  G  L WR +A L          L +++
Sbjct: 159 VYLGESIQPEVRGSLGLLPTVFGNSGILMCFTAGMYLAWRNLALLGACIPIIFLILMFLI 218

Query: 143 IPSPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMA 202
             +P W ++KG+  +A KSL++L     ++  +   ++KM+   E  +    LI++    
Sbjct: 219 PETPRWYISKGKIKEARKSLQWLRGKTADISEELDSIQKMHIESERIATEGALIELFR-K 277

Query: 203 TGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGSRMNVYLATVLVGVVRMVFGLLTS 262
             IKP+ +   L   QQ +GI   IFY VQ  +D GS ++  L+T++VG+V  +   + +
Sbjct: 278 NHIKPVFISLGLMFFQQFSGINAVIFYTVQIFKDSGSTVDENLSTIIVGLVNFISTFVAA 337

Query: 263 QLLRTYGRRSLTMFSQIEKSL----------------------IPVFCILFYVAISVIGM 300
            ++   GR+ L   S I   +                      IP+  ++ YV     G 
Sbjct: 338 MIIDRLGRKMLLYISSILMCITLFTFGTFFYVKELMDVTAFGWIPLMSLIVYVIGFSFGF 397

Query: 301 LSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALIS 360
             IPW M  EI P++IRG A  +         F   + Y      +G      W F  + 
Sbjct: 398 GPIPWLMMGEILPVKIRGTAASVATAFNWSCTFVVTKTYEDLVLHIGPYGTF-WLFGTLV 456

Query: 361 VISIVYVYIFLPETHGRTLLEIEEYF 386
            ++ ++V I +PET GR+L EIE  F
Sbjct: 457 AVAFIFVIICVPETRGRSLEEIERRF 482

Moderate-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Apis mellifera ligustica (taxid: 7469)

>sp|B4P624|TRET1_DROYA Facilitated trehalose transporter Tret1 OS=Drosophila yakuba GN=Tret1 PE=3 SV=1

 Score =  128 bits (322), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 156/326 (47%), Gaps = 38/326 (11%)

Query: 92  VYITEVARPDLRGALICIGPSITSLGMVIVYALGAVLHWRTVAWLSLA--------YILI 143
           VY+ E  +P++RG L  +  +  ++G+++ +  G+ ++W  +A+L  A          LI
Sbjct: 512 VYLGETVQPEVRGTLGLLPTAFGNIGILVCFVAGSFMNWSMLAFLGAALPVPFLILMFLI 571

Query: 144 P-SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMA 202
           P +P W +++GR  +A K+L +L     +V+ + + L +  +  + Q+    +++++   
Sbjct: 572 PETPRWYVSRGREERARKALTWLRGKEADVEPELKGLMRSQADADRQATQNTMLELLKR- 630

Query: 203 TGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGSRMNVYLATVLVGVVRMVFGLLTS 262
             +KPL +   L   QQ +GI   IFY VQ  +D GS ++  + T++VGVV  V   +  
Sbjct: 631 NNLKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDGNVCTIIVGVVNFVATFIGI 690

Query: 263 QLLRTYGRRSLTMFSQIEKSL-----------------------IPVFCILFYVAISVIG 299
            L+   GR+ L   S I   L                       +P+ C + Y+    +G
Sbjct: 691 LLIDRAGRKILLYASDIAMVLTLFVLGGFFYCKAHGPDVSHLGWLPLTCFVVYILGFSVG 750

Query: 300 MLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVG--GSAMVQWFFA 357
              IPW M  EI P +IRG A  +         F   +    F+D VG  G+    W F 
Sbjct: 751 FGPIPWLMMGEILPAKIRGAAASVATSFNWTCTFVVTKT---FQDLVGSLGAHGAFWLFG 807

Query: 358 LISVISIVYVYIFLPETHGRTLLEIE 383
            I  + + +V +++PET G+TL +IE
Sbjct: 808 AICFVGLFFVILYVPETQGKTLEDIE 833

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila yakuba (taxid: 7245)

>sp|B4LPX5|TRET1_DROVI Facilitated trehalose transporter Tret1 OS=Drosophila virilis GN=Tret1 PE=3 SV=2

 Score =  127 bits (318), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 157/324 (48%), Gaps = 34/324 (10%)

Query: 92  VYITEVARPDLRGALICIGPSITSLGMVIVYALGAVLHWRTVAWLS---------LAYIL 142
           VY+ E  +P++RG L  +  +  ++G+++ +  G  + W  +A+L          L +++
Sbjct: 567 VYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDWSMLAFLGASLPVPFLILMFLI 626

Query: 143 IPSPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMA 202
             +P W +++GR  +A K+L +L     +V+ + + L +  +  + Q+   ++++++  +
Sbjct: 627 PETPRWYVSRGREERARKALVWLRGKEADVEPELKGLMRSQADADRQATQNKMLELLKRS 686

Query: 203 TGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGSRMNVYLATVLVGVVRMVFGLLTS 262
             +KPL +   L   QQL+GI   IFY VQ  +D GS ++  + T++VGVV      + +
Sbjct: 687 N-LKPLSISLGLMFFQQLSGINAVIFYTVQIFQDAGSTIDGNVCTIIVGVVNFAATFIAT 745

Query: 263 QLLRTYGRR----------SLTMF----------SQIEKSLI---PVFCILFYVAISVIG 299
            L+   GR+           LT+F          S ++ S +   P+ C + Y+    +G
Sbjct: 746 ILIDRAGRKVLLYVSNVMMVLTLFVLGGFFYCKSSGMDTSNVGWLPLSCFVIYILGFSLG 805

Query: 300 MLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALI 359
              IPW M  EI P +IRG A  +         F   + +    D +G      W F  I
Sbjct: 806 FGPIPWLMMGEILPAKIRGSAASVATAFNWSCTFVVTKSFQDMIDFMGAHGAF-WMFGAI 864

Query: 360 SVISIVYVYIFLPETHGRTLLEIE 383
             I + +V  ++PET G+TL +IE
Sbjct: 865 CFIGLFFVIFYVPETQGKTLEDIE 888

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila virilis (taxid: 7244)

>sp|Q291H8|TRET1_DROPS Facilitated trehalose transporter Tret1 OS=Drosophila pseudoobscura pseudoobscura GN=Tret1 PE=3 SV=3

 Score =  127 bits (318), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/326 (27%), Positives = 151/326 (46%), Gaps = 38/326 (11%)

Query: 92  VYITEVARPDLRGALICIGPSITSLGMVIVYALGAVLHWRTVAWLSLA--------YILI 143
           VY+ E  +P++RG L  +  +  ++G+++ +  G  + W  +A+L  A          LI
Sbjct: 524 VYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDWSMLAFLGAALPVPFLILMFLI 583

Query: 144 P-SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTM- 201
           P +P W +++GR  +A K+L +L     +V   E ELK +  ++ +    A   KM+ + 
Sbjct: 584 PETPRWFVSRGREEKARKALSWLRGKEADV---EPELKGLMRSQADADRQATQNKMMELL 640

Query: 202 -ATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGSRMNVYLATVLVGVVRMVFGLL 260
               +KPL +   L   QQL+GI   IFY V   +D GS ++  L T++VG+V  +   +
Sbjct: 641 KRNNLKPLSISLGLMFFQQLSGINAVIFYTVSIFKDAGSTIDGNLCTIIVGIVNFMATFI 700

Query: 261 TSQLLRTYGRRSLTMFSQI-----------------------EKSLIPVFCILFYVAISV 297
            + L+   GR+ L   S I                       +   +P+ C + Y+    
Sbjct: 701 ATLLIDRAGRKILLYVSNIAMIITLFVLGGFFYCKSHGQDVSQLGWLPLSCFVIYILGFS 760

Query: 298 IGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFA 357
           +G   IPW M  EI P +IRG A  +         F   + +    D +G      W F 
Sbjct: 761 LGFGPIPWLMMGEILPSKIRGSAASVATAFNWSCTFVVTKTFQDMIDFMGAHGAF-WLFG 819

Query: 358 LISVISIVYVYIFLPETHGRTLLEIE 383
            I  I + +V +++PET G+TL +IE
Sbjct: 820 SICFIGLFFVILYVPETQGKTLEDIE 845

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	420
157125931	562	sugar transporter [Aedes aegypti] gi|108	0.759	0.567	0.420	5e-79
158298633	499	AGAP009745-PA [Anopheles gambiae str. PE	0.716	0.603	0.425	8e-74
91085503	518	PREDICTED: similar to sugar transporter	0.740	0.600	0.396	8e-72
307170743	478	Sugar transporter ERD6-like 6 [Camponotu	0.778	0.684	0.413	1e-71
91085493	539	PREDICTED: similar to sugar transporter	0.757	0.589	0.390	2e-71
383854846	545	PREDICTED: facilitated trehalose transpo	0.709	0.546	0.435	3e-71
189238601	530	PREDICTED: similar to sugar transporter	0.754	0.598	0.411	1e-70
307202953	542	Sugar transporter ERD6-like 6 [Harpegnat	0.742	0.575	0.425	2e-70
332017608	557	Sugar transporter ERD6-like 4 [Acromyrme	0.785	0.592	0.414	2e-69
332373510	557	unknown [Dendroctonus ponderosae]	0.790	0.596	0.374	4e-69

>gi|157125931|ref|XP_001654453.1| sugar transporter [Aedes aegypti] gi|108873463|gb|EAT37688.1| AAEL010348-PA [Aedes aegypti]

 Score =  301 bits (770), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 156/371 (42%), Positives = 225/371 (60%), Gaps = 52/371 (14%)

Query: 84  AMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVLHWRTVAWLSLAYILI 143
           A+G SPAIVYITEV+RPD+RG+LI  GP+I SLGMVI Y  GA L+WR VAW+++AY ++
Sbjct: 163 AIGTSPAIVYITEVSRPDMRGSLISSGPTIASLGMVIAYTKGAFLNWRLVAWINIAYTVV 222

Query: 144 P----------SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMN---------- 183
           P          SPVWL++KGR   A +SLK+L + Y +  + +Q L +M+          
Sbjct: 223 PVLLIQLLVPESPVWLVSKGRIEDAARSLKFLYKKYPQPDHTDQPLSEMHLNALIKERES 282

Query: 184 ---STKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGSR 240
                + N   +    +     TG KP++++   F +QQ +GIYIT+F+AV F++D+G+ 
Sbjct: 283 KIHEAERNLEANQSRFRGFLKPTGYKPMIILFWFFLIQQFSGIYITLFFAVTFMQDVGTE 342

Query: 241 MNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIEKSL----------------- 283
           +N Y+A++ VG+ R +  LL + LL+ + RR L M S    ++                 
Sbjct: 343 VNAYMASIFVGLTRFMMSLLNAWLLKKFARRPLVMVSTTGMAICMFVSGLFTMWIKEGTT 402

Query: 284 ----IPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYY 339
               IPV C+L YV  S+IG+L+IPWTMTAE+FP EIRGI   L++ +A++LMFFA+Q Y
Sbjct: 403 TLTWIPVVCLLLYVCASMIGLLTIPWTMTAELFPTEIRGIGHSLSYSMANLLMFFAVQSY 462

Query: 340 PWFKDSVGGSAMVQWFFALISVISIVYVYIFLPETHGRTLLEIEEYFETSCVYACSKKRR 399
               D +GG+  VQW FA +SV+  ++  IFLPETHG++L +IE YF      A  KKR 
Sbjct: 463 RSMTDILGGAHAVQWLFAAVSVVGFLFALIFLPETHGKSLAQIEAYF------AGDKKRN 516

Query: 400 A--SAAILQNQ 408
              +A I Q+ 
Sbjct: 517 PQLTATIQQSN 527

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158298633|ref|XP_318829.4| AGAP009745-PA [Anopheles gambiae str. PEST] gi|157013978|gb|EAA14209.4| AGAP009745-PA [Anopheles gambiae str. PEST]

 Score =  284 bits (726), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 142/334 (42%), Positives = 210/334 (62%), Gaps = 33/334 (9%)

Query: 84  AMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVLHWRTVAWLSLAYILI 143
           A+G SPAIVYITEVARPD+RG+LI  GP++ SLGMVI YA GA + WR V+W+ + Y ++
Sbjct: 122 ALGTSPAIVYITEVARPDMRGSLISSGPTLASLGMVIAYAKGAFMDWRLVSWICIIYTIV 181

Query: 144 P----------SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSA 193
           P          SPVWL++KGR   A +SL++L + Y + ++  +   + N  +  Q  S 
Sbjct: 182 PVLLIQLFVPESPVWLVSKGRIEDAARSLRFLYKKYPQPEHTVRAGSQKNVNRHGQQQSK 241

Query: 194 RLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGSRMNVYLATVLVGVV 253
             ++     TG KP++++   F +QQ +GIYIT+F+AV F++D+G+ +N + A++ VG+ 
Sbjct: 242 --LRGFLKPTGYKPMIILFWFFLIQQFSGIYITLFFAVTFIQDVGTEVNAFTASIFVGLT 299

Query: 254 RMVFGLLTSQLLRTYGRRSLTMFSQIEKSL---------------------IPVFCILFY 292
           R    LL + LL+ + RR L M S    ++                     IPV  +L Y
Sbjct: 300 RFSMSLLNAWLLKRFPRRQLVMVSTTGMAICMFVSGLFTLWIKEGTTTLTWIPVVGLLLY 359

Query: 293 VAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMV 352
           V  S+IG+L+IPWTMTAE+FP +IRGIA  +++ +A++LMFFA+Q Y    D +GG+  V
Sbjct: 360 VCASMIGLLTIPWTMTAELFPTDIRGIAHSISYSMANLLMFFAVQSYRTITDLLGGAYAV 419

Query: 353 QWFFALISVISIVYVYIFLPETHGRTLLEIEEYF 386
           QW FA++SVI   +   FLPETHG++L EIE +F
Sbjct: 420 QWMFAVVSVIGFFFALFFLPETHGKSLAEIEAFF 453

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91085503|ref|XP_971406.1| PREDICTED: similar to sugar transporter [Tribolium castaneum] gi|270008374|gb|EFA04822.1| hypothetical protein TcasGA2_TC014872 [Tribolium castaneum]

 Score =  277 bits (708), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 139/351 (39%), Positives = 223/351 (63%), Gaps = 40/351 (11%)

Query: 88  SPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVLHWRTVAWLSLAYILIP--- 144
           SPA+VYITE+AR D+RG+LI +GPS  SLGMVI Y  G ++ WR +AWL   Y+++P   
Sbjct: 153 SPAVVYITEIARKDMRGSLIALGPSYVSLGMVIAYFKGWLISWRLIAWLCNIYLVVPFFL 212

Query: 145 ------SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKM--------NSTKENQS 190
                 SP+WL++KGR  +A K+L +L + Y+   N ++   +M        + TK++++
Sbjct: 213 LFLIPESPIWLVSKGRVQEAQKALDWLHK-YQPRPNNQKSFAEMTLNLLVKEDETKKSEA 271

Query: 191 LSAR-LIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGSRMNVYLATVL 249
                 I+     TG KPLL+++ LF  QQ +GIYI +FY+V F E++G+ +N Y+A++L
Sbjct: 272 QGGDSTIREFLKPTGYKPLLILSGLFFFQQYSGIYIFLFYSVSFFENVGTNVNPYIASIL 331

Query: 250 VGVVRMVFGLLTSQLLRTYGRRSLTMFS---------------------QIEKSLIPVFC 288
           +GV+R++  LL + +L+ + RR L M S                       + + +PV  
Sbjct: 332 IGVIRLIMSLLNTWMLKRFSRRVLIMISGSGMALAMLISGLFTSWIKEGTTDLTWVPVVF 391

Query: 289 ILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGG 348
           +LFYV  S++G+L+IPWTMTAE+FPL+IR +A  ++  + +++MFFA+Q Y   + ++GG
Sbjct: 392 LLFYVVASMVGLLTIPWTMTAELFPLKIRSMAHSISTSIVNLIMFFAVQNYVSMEVALGG 451

Query: 349 SAMVQWFFALISVISIVYVYIFLPETHGRTLLEIEEYFETSCVYACSKKRR 399
           SA VQWFFA +S+ ++++ ++FLPETH + L EIE+YF+ + +Y   K + 
Sbjct: 452 SAGVQWFFAGLSLGAVLFTFVFLPETHRKKLSEIEDYFKHNTIYLGQKTKE 502

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307170743|gb|EFN62868.1| Sugar transporter ERD6-like 6 [Camponotus floridanus]

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 155/375 (41%), Positives = 224/375 (59%), Gaps = 48/375 (12%)

Query: 84  AMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVLHWRTVAWLSLAYILI 143
           A+  SPAIVYITEVARP+LRG+LI  GP++ S GM++ Y  GA L WR VAWLS+ Y ++
Sbjct: 91  ALATSPAIVYITEVARPELRGSLISFGPTLASFGMLLSYLKGAYLDWRLVAWLSIIYSIV 150

Query: 144 P----------SPVWLLNKGRANQALKSLKYLARNYKEVKN------------KEQELKK 181
           P          SPVWL++KGR + A KSL++L +N K                KE E+K 
Sbjct: 151 PVIMVQFWVPESPVWLVSKGRIDDAKKSLEWLYKNEKSQGKISVVEAQFTTIMKENEIKL 210

Query: 182 MNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGSRM 241
               +      +  ++     TG KP+ ++   FA QQ +GIYIT+FYAV + +++G+ +
Sbjct: 211 NEQRRSKHGNMSNKLRGFLKPTGWKPMTILFFFFAFQQFSGIYITLFYAVTWFQEVGAGV 270

Query: 242 NVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIEKSL------------------ 283
           + YLA++LVG+ R +  ++ + LLR Y RR+L + S    ++                  
Sbjct: 271 DEYLASILVGLTRFLCSMVNTWLLRRYKRRALCIISSFGMAICMTVSGYFTLNIKNGDRS 330

Query: 284 ---IPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYP 340
              +PV C+L YV  S++GML+IPWTMTAE+FP EIRGIA  +++ +A++LMF ALQ Y 
Sbjct: 331 GYWVPVLCLLLYVCTSMVGMLTIPWTMTAELFPTEIRGIAHSISYSMANVLMFAALQSYR 390

Query: 341 WFKDSVGGSAMVQWFFALISVISIVYVYIFLPETHGRTLLEIEEYFETS----CVYACSK 396
             +  +GGS  VQWFFA +SV + ++V++ LPETHG+ L EIEEYF  +         +K
Sbjct: 391 SLQAFLGGSYAVQWFFAGVSVGAALFVWLMLPETHGKKLSEIEEYFHNNFLALGAETKNK 450

Query: 397 KRRASAAILQN-QSP 410
           KR+A     Q  +SP
Sbjct: 451 KRQAQRRAQQKTKSP 465

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91085493|ref|XP_971034.1| PREDICTED: similar to sugar transporter [Tribolium castaneum] gi|270008379|gb|EFA04827.1| hypothetical protein TcasGA2_TC014877 [Tribolium castaneum]

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 141/361 (39%), Positives = 217/361 (60%), Gaps = 43/361 (11%)

Query: 84  AMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVLHWRTVAWLSLAYILI 143
           A G SPA+VYITE+AR D+RG+L+   P+ TSLG+V+ Y  G +++WRTVAW+ L Y ++
Sbjct: 162 AWGTSPAMVYITEIARADMRGSLMSFAPAYTSLGVVLAYFEGWLMNWRTVAWVCLVYAIL 221

Query: 144 P---------SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQE---------LKKMNST 185
           P         SP WL+ KGR  QA KS+ +L +    V +K  +         L + +  
Sbjct: 222 PFILVMFIPESPAWLIAKGRNEQAKKSINWLNKYQPRVPSKNDQTFAQVQFEYLIREHEE 281

Query: 186 KENQSLSA----RLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGSRM 241
           KE   +++      +K +   TG KPLL++  LF  QQ +GIYIT+FY+V F +++GS +
Sbjct: 282 KEKAKINSGGFVARVKQLLKPTGYKPLLILLGLFVFQQFSGIYITLFYSVNFFQEVGSGL 341

Query: 242 NVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIEKSL------------------ 283
           + Y  ++L+G VR +  ++ + +L+T+GRR+L ++  +  ++                  
Sbjct: 342 DPYFVSILIGGVRFLMSIINTYMLKTFGRRTLIIYGSLAMAVCMFVSGLYTYWIKDGVTT 401

Query: 284 ---IPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYP 340
              +PV  IL YV  S++G+LSIPWTMTAE+FP+EIRG+A  + +  A+ +MF ++Q Y 
Sbjct: 402 LNWVPVVAILLYVVTSMVGLLSIPWTMTAELFPIEIRGMAHSIVYSTAYFIMFLSIQSYN 461

Query: 341 WFKDSVGGSAMVQWFFALISVISIVYVYIFLPETHGRTLLEIEEYFETSCVYACSKKRRA 400
             K++  G A +QWFFA+ S+  +VY YI LPE HG  L EI+EYF  + VY   +K + 
Sbjct: 462 TLKETFNGVAGLQWFFAVTSLAGLVYAYILLPEAHGIKLAEIQEYFMYNSVYIGGRKTKK 521

Query: 401 S 401
           S
Sbjct: 522 S 522

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854846|ref|XP_003702931.1| PREDICTED: facilitated trehalose transporter Tret1-like [Megachile rotundata]

 Score =  275 bits (703), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 151/347 (43%), Positives = 217/347 (62%), Gaps = 49/347 (14%)

Query: 88  SPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVLHWRTVAWLSLAYILIP--- 144
           SPAIVYITEVARP+LRG++I  GP++ S GMV+ Y  GA +HWR VAWLS+ Y ++P   
Sbjct: 162 SPAIVYITEVARPELRGSMISFGPTLASFGMVLSYLKGAYIHWRVVAWLSIIYAVVPIVL 221

Query: 145 -------SPVWLLNKGRANQALKSLKYLARNYK-EVKN--------------KEQELKKM 182
                  SPVWL++KGR  +A KSL++L   YK E K               KE E+K  
Sbjct: 222 VQLFVPESPVWLVSKGRLEEAKKSLEWL---YKCETKQGKVSAAEAQYLTIVKENEIKLS 278

Query: 183 NSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGSRMN 242
              K      +  ++     TG KP+ ++ +LF  QQ +GIYIT+FYAV + +++GS ++
Sbjct: 279 EQRKSKHGGISTKLRGFLKPTGWKPITILFLLFFFQQFSGIYITLFYAVTWFQEVGSGVD 338

Query: 243 VYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIEKSL------------------- 283
            Y+A++LVGV R +  ++ + LLR Y RR+L + S +  +L                   
Sbjct: 339 EYIASILVGVTRFLCSMVNTWLLRRYKRRALCIISSLGMALCMTVSGYFTYQIKSGDRSG 398

Query: 284 --IPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPW 341
             +PV C+L YV  S++GML+IPWTMTAE+FP +IRGIA  +++ +A++LMF ALQ Y  
Sbjct: 399 YWVPVACLLLYVCTSMVGMLTIPWTMTAELFPTDIRGIAHSISYSIANLLMFSALQSYRS 458

Query: 342 FKDSVGGSAMVQWFFALISVISIVYVYIFLPETHGRTLLEIEEYFET 388
            +  +GGS  VQWFFA +S+ ++V+V++ LPETHG+ L EIEEYF+ 
Sbjct: 459 LQSFLGGSYAVQWFFAAVSIGAVVFVWLLLPETHGKKLSEIEEYFQN 505

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189238601|ref|XP_967006.2| PREDICTED: similar to sugar transporter [Tribolium castaneum] gi|270009155|gb|EFA05603.1| hypothetical protein TcasGA2_TC015809 [Tribolium castaneum]

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 148/360 (41%), Positives = 214/360 (59%), Gaps = 43/360 (11%)

Query: 84  AMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVLHWRTVAWLSLAYILI 143
           A+G SPAIVY+TE+AR D+RG+LI   P+  SLGMV+ +  G    WR VAW  L Y +I
Sbjct: 153 ALGTSPAIVYLTEIARADMRGSLISFAPAYASLGMVLTFLKGWFFSWRVVAWTCLGYTVI 212

Query: 144 P---------SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNST---KENQSL 191
           P         SP WL++KG+  QA KSL ++ +   + +NK Q L +M      KE+Q  
Sbjct: 213 PCVLLMFIPESPAWLVSKGKIEQASKSLAWINKYQPQPENKPQTLAEMQLAQLQKEHQKK 272

Query: 192 ----------SARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGSRM 241
                     +A   +     TG KPLL++  LF  QQ +GIYIT+F++V+F + +GS +
Sbjct: 273 LDEAALHGRGAAYKARAFLKPTGYKPLLILIGLFLCQQFSGIYITLFHSVEFFQAVGSPV 332

Query: 242 NVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFS---------------------QIE 280
           N YLA+VL+  VR+   +L + LLRT+ RR L M S                       +
Sbjct: 333 NAYLASVLISTVRLFMSVLDTYLLRTFSRRPLIMLSGFTMATCMFFSGLFTKWITEGTTD 392

Query: 281 KSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYP 340
            + +PV  +L YV  S++G+L IPWTMTAE+FP+EIRG+A  + +  A+ILMF A+Q Y 
Sbjct: 393 ATWVPVAFLLLYVIASMLGLLPIPWTMTAELFPIEIRGVAHSIAYSSANILMFGAVQCYE 452

Query: 341 WFKDSVGGSAMVQWFFALISVISIVYVYIFLPETHGRTLLEIEEYFETSCVYACSKKRRA 400
               S+ G+A VQ+FFA+I +I++VY ++F+PETH + L EIEEYF  + +Y   K ++ 
Sbjct: 453 VLMTSLKGAAGVQFFFAVICIIAMVYTFVFVPETHRKKLTEIEEYFNHNMIYLGQKPQKG 512

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307202953|gb|EFN82173.1| Sugar transporter ERD6-like 6 [Harpegnathos saltator]

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 151/355 (42%), Positives = 220/355 (61%), Gaps = 43/355 (12%)

Query: 88  SPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVLHWRTVAWLSLAYILIP--- 144
           SPAIVYITEVARP+LRG+LI  GP++ S GMV+ Y  GA L WR VAWLS+ Y ++P   
Sbjct: 159 SPAIVYITEVARPELRGSLISFGPTLASFGMVLSYLKGAYLDWRLVAWLSIIYAIVPVIL 218

Query: 145 -------SPVWLLNKGRANQALKSLKYLARNYKEVKN------------KEQELKKMNST 185
                  SPVWL++KGR + A KSL++L +N                  KE E+K     
Sbjct: 219 VQVWVPESPVWLVSKGRIDDAKKSLEWLYKNETSQGKMSVAETQFTTIMKENEIKLSEQR 278

Query: 186 KENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGSRMNVYL 245
           +      +  ++     TG KP+ ++ +LF+ QQ +GIYIT+FYAV + +++G+ ++ Y+
Sbjct: 279 RSKHGNVSNKLRGFLKPTGWKPMAILFLLFSFQQFSGIYITLFYAVTWFQEVGAGVDEYI 338

Query: 246 ATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIEKSL---------------------I 284
           A++LVGV R +  ++ + LLR Y RR+L + S +  ++                     +
Sbjct: 339 ASILVGVTRFLCSMVNTWLLRRYRRRALCIISSLGMAVCMTVSGYFTLNIRNGDRSGYWV 398

Query: 285 PVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKD 344
           PV C+L YV  S++GML+IPWTMTAE+FP EIRGIA  +++ +A++LMF ALQ Y   + 
Sbjct: 399 PVLCLLLYVCTSMVGMLTIPWTMTAELFPSEIRGIAHSISYSMANLLMFAALQSYRSLQT 458

Query: 345 SVGGSAMVQWFFALISVISIVYVYIFLPETHGRTLLEIEEYFETSCVYACSKKRR 399
            +GGS  VQWFFA ISV + ++V++ LPETHG+ L EIEEYF  + +   +KK+R
Sbjct: 459 FLGGSYAVQWFFAGISVGAAIFVWLLLPETHGKKLSEIEEYFHNNFLALGAKKKR 513

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017608|gb|EGI58305.1| Sugar transporter ERD6-like 4 [Acromyrmex echinatior]

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 158/381 (41%), Positives = 226/381 (59%), Gaps = 51/381 (13%)

Query: 84  AMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVLHWRTVAWLSLAYILI 143
           A+  SPAIVYITEVARP+LRG+LI  GP++ S GMV+ Y  GA + W  VA+ S+AY  +
Sbjct: 174 ALMTSPAIVYITEVARPELRGSLISFGPTLASFGMVLCYLKGAYIKWEFVAYFSIAYSFV 233

Query: 144 P----------SPVWLLNKGRANQALKSLKYLARNY-KEVKN-----------KEQELKK 181
           P          SP+WL++KGR   A KSL +L +N   E K            KE E+K 
Sbjct: 234 PIFMVQFLVPESPIWLISKGRKEDAKKSLDWLYKNETSESKTSVALAQFNNIVKEYEIKL 293

Query: 182 MNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGSRM 241
               +     +A   +     TG KP+ ++ + F+ QQ +GIYIT+FYAV + +++G+ +
Sbjct: 294 NEQRRSKHGSAASKWRGFFKPTGWKPMAILFLFFSFQQFSGIYITLFYAVTWFQEVGAGV 353

Query: 242 NVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIEKSL------------------ 283
           + YLA++LVG+ R +  ++ + LLR Y RRSL + S I  +L                  
Sbjct: 354 DAYLASILVGLTRFLCSMVNTWLLRRYKRRSLCIISSIGMALCMIVSGYFTLNIKNGDRS 413

Query: 284 ---IPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYP 340
              +PV C+L YV  S++GML+IPWTMTAE+FP EIRGIA  +++ +A++LMF ALQ Y 
Sbjct: 414 GFWVPVACLLLYVCTSMVGMLTIPWTMTAELFPTEIRGIAHSISYSMANLLMFAALQSYR 473

Query: 341 WFKDSVGGSAMVQWFFALISVISIVYVYIFLPETHGRTLLEIEEYFETS----CVYACSK 396
             +  +GG+  VQ+FFA +SV + ++V++ LPETHG+ L EIEEYF  +       A  K
Sbjct: 474 SLQIFLGGAYAVQYFFAGVSVGAAIFVWLLLPETHGKKLSEIEEYFHNNFLALGAEAKDK 533

Query: 397 KRRASAAILQNQ----SPKIV 413
           KRRA+    Q      +PKIV
Sbjct: 534 KRRAARRAQQKATEPLNPKIV 554

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332373510|gb|AEE61896.1| unknown [Dendroctonus ponderosae]

 Score =  268 bits (685), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 141/377 (37%), Positives = 223/377 (59%), Gaps = 45/377 (11%)

Query: 86  GPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVLHWRTVAWLSLAYILIP- 144
           G SPA VYITE+AR D+RG+LI   P+  SLGM++ +  G ++HWRTVAW+ L Y ++P 
Sbjct: 170 GSSPATVYITEIARVDMRGSLISFAPAFASLGMMLAFLKGWLMHWRTVAWMCLGYSIVPV 229

Query: 145 ---------SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQEL--------KKMNSTKE 187
                    SP WL+++ R  +A K+L++L  N  + + + + L        ++ +  K+
Sbjct: 230 ILIQLFIPESPAWLVSRDRIEEAAKALRWLHSNQPQPEQRPETLAELQLHLLQREHQIKQ 289

Query: 188 NQSL---SARLIKMVTM--ATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGSRMN 242
            ++L   +  L+K+      TG KPL+++  LF  QQ +GIYIT+FY+V FLE +GS  N
Sbjct: 290 EEALKNGTGFLVKVRQFLRPTGYKPLIILFGLFFCQQFSGIYITLFYSVTFLESIGSSTN 349

Query: 243 VYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIEKSL------------------- 283
            YLA++++  VR +   + + +LR++ RR L M S +  +L                   
Sbjct: 350 PYLASIMICTVRFIMSCINTYMLRSFHRRPLIMTSGVGMALCMGFAGFFSKWIIEGSSDM 409

Query: 284 --IPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPW 341
             +P   +LF+V  S+IG+L IPWTMTAE+FP+EIRG+A  + + + +++MF ++Q +  
Sbjct: 410 RWVPTMLLLFFVITSMIGLLPIPWTMTAELFPIEIRGVAHSIAYSVNNLIMFASIQSFYT 469

Query: 342 FKDSVGGSAMVQWFFALISVISIVYVYIFLPETHGRTLLEIEEYF-ETSCVYACSKKRRA 400
            +D  GG   VQWFFA IS+++ VY +IFLPETHG+ L EI +YF  +   Y  SK+R  
Sbjct: 470 LEDWFGGIVGVQWFFAAISLLATVYTFIFLPETHGKKLSEITDYFVHSGAFYVLSKERSK 529

Query: 401 SAAILQNQSPKIVVSKE 417
                 +++P+  + K 
Sbjct: 530 PKKAATSRAPRKNIVKH 546

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	420
FB|FBgn0034909	533	CG4797 [Drosophila melanogaste	0.604	0.476	0.314	9.9e-31
FB|FBgn0033644	488	Tret1-2 "Trehalose transporter	0.678	0.584	0.277	1e-27
UNIPROTKB|B4P624	856	Tret1 "Facilitated trehalose t	0.688	0.337	0.259	1.8e-24
UNIPROTKB|F1NDA6	482	SLC2A8 "Uncharacterized protei	0.561	0.489	0.258	3.3e-20
UNIPROTKB|Q17NV8	806	Tret1 "Facilitated trehalose t	0.592	0.308	0.275	2.7e-19
UNIPROTKB|B0WC46	517	Tret1 "Facilitated trehalose t	0.592	0.481	0.275	5.1e-19
UNIPROTKB|B4HNS1	488	Tret1-2 "Facilitated trehalose	0.6	0.516	0.265	1.3e-18
UNIPROTKB|B4QBN3	488	Tret1-2 "Facilitated trehalose	0.6	0.516	0.265	1.3e-18
UNIPROTKB|Q7PIR5	793	Tret1 "Facilitated trehalose t	0.595	0.315	0.268	2.9e-18
UNIPROTKB|A9ZSY2	502	Tret1 "Facilitated trehalose t	0.683	0.571	0.241	3.1e-18

FB|FBgn0034909 CG4797 [Drosophila melanogaster (taxid:7227)]

 Score = 282 (104.3 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
 Identities = 91/289 (31%), Positives = 145/289 (50%)

Query:    21 FGLLTSQLLRTY-GRRSLTMFSGLGMAVCMTTSGYYTQLIMTGQIEKSLIPVFCILFYVA 79
             FG L S  L  Y GRR   + S + + +     G+ T  I      KS+  V    F   
Sbjct:   114 FGSLLSGPLADYLGRRRTLILSVIPLLL-----GWSTLAIA-----KSIKVVIFARFLCG 163

Query:    80 ISVIAMGPSPAIVYITEVARPDLRGALICIGPSIT-SLGMVIVYALGAVLHWRTVAW--- 135
              +   +G  P  VYI E A P+LR  LI   P +  S G+++VY+LG++++WR+VAW   
Sbjct:   164 FATGILG-GPGQVYIAETAEPNLRSLLIG-APYVAYSSGILMVYSLGSMMYWRSVAWCAN 221

Query:   136 ----LSLAYI-LIP-SPVWLLNKGRANQALKSLKYLARN----YKEVKNKEQELKKMN-S 184
                 LS+  I  IP +P WLL  G   +AL++L +L  +     KE+ + +Q L K   +
Sbjct:   222 VLPLLSMVSISFIPETPAWLLRNGHEKRALQALSFLRGSEISAQKELNDMKQRLAKERVT 281

Query:   185 TKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGSRMNVY 244
             TK N+++     ++      IKPL+++ V   LQ  +G +I IFYAV  + + G+  +  
Sbjct:   282 TKTNENI----FQLCCQRVAIKPLVIVIVFSLLQMFSGTFIVIFYAVDMISEFGAEFDSK 337

Query:   245 LATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIEKSLIPVFCILFYV 293
              A +   VVR++  ++   +L    RR + + S I   L   FC++  V
Sbjct:   338 QAAIATAVVRVICCMVFCVVLIFVRRRRIMIVSGIGSGL---FCLVLSV 383

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0033644 Tret1-2 "Trehalose transporter 1-2" [Drosophila melanogaster (taxid:7227)]

 Score = 255 (94.8 bits), Expect = 1.0e-27, Sum P(2) = 1.0e-27
 Identities = 87/314 (27%), Positives = 151/314 (48%)

Query:    22 GLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSGYYTQLIMTGQIEKSLIPVFCILFYVAIS 81
             G+    L+   GRRS T+   L  AV    S     L++   +  ++I + C  F     
Sbjct:    86 GITGGPLIEYLGRRS-TI---LATAVPFIVSS----LLIACAV--NVIMILCGRFLTGFC 135

Query:    82 V-IAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVLHWRTVAWLSLAY 140
             V IA    P  VY+ E  +P++RG L  +  ++ ++G+++ Y  G+ ++W  +A+L  A 
Sbjct:   136 VGIASLSLP--VYLGETLQPEVRGTLGLLPTALGNIGILVCYVAGSFMNWSMLAFLGAAL 193

Query:   141 --------ILIP-SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSL 191
                     I+IP +P W +N+G+  +A K+LK+L     +V+ + +EL +  +  + Q+ 
Sbjct:   194 PVPFLILMIIIPETPRWFVNRGQEERARKALKWLRGKEADVEPELKELMQSQADADRQAT 253

Query:   192 SARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGSRMNVYLATVLVG 251
                 +++      +KPL +   L   QQ +GI   IFY VQ  +D GS ++  L+T++VG
Sbjct:   254 QNTCLELFKR-NNLKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDSNLSTIIVG 312

Query:   252 VVRMVFGLLTSQLLRTYGRRSLTMFSQIEKSLIPVFCIL---FYVAISVIGMLSIPWTMT 308
             VV      +   L+   GR+ L   S I  ++I    IL   FY       +  + W + 
Sbjct:   313 VVNFFATFMGIILIDRLGRKILLYVSDI--AMIVTLSILGGFFYCKAHGPDVSHLGW-LP 369

Query:   309 AEIFPLEIRGIAQG 322
                F + I G + G
Sbjct:   370 LTCFVIYILGFSLG 383

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0005353 "fructose transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0015771 "trehalose transport" evidence=IDA

UNIPROTKB|B4P624 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila yakuba (taxid:7245)]

 Score = 234 (87.4 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
 Identities = 82/316 (25%), Positives = 150/316 (47%)

Query:    19 MVFGLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSGYYTQLIMTGQIEKSLIPVFCILFYV 78
             +V G+    L+   GRR+ T+   L  AV    S     L++   +  ++  V C  F  
Sbjct:   450 LVGGVAGGPLIEYMGRRN-TI---LATAVPFIVSS----LLIACAVNVAM--VLCGRFLA 499

Query:    79 AISV-IAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVLHWRTVAWLS 137
                V IA    P  VY+ E  +P++RG L  +  +  ++G+++ +  G+ ++W  +A+L 
Sbjct:   500 GFCVGIASLSLP--VYLGETVQPEVRGTLGLLPTAFGNIGILVCFVAGSFMNWSMLAFLG 557

Query:   138 LAY--------ILIP-SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKEN 188
              A          LIP +P W +++GR  +A K+L +L     +V+ + + L +  +  + 
Sbjct:   558 AALPVPFLILMFLIPETPRWYVSRGREERARKALTWLRGKEADVEPELKGLMRSQADADR 617

Query:   189 QSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGSRMNVYLATV 248
             Q+    +++++     +KPL +   L   QQ +GI   IFY VQ  +D GS ++  + T+
Sbjct:   618 QATQNTMLELLKR-NNLKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDGNVCTI 676

Query:   249 LVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIEKSLIPVFCI--LFYVAISVIGMLSIPWT 306
             +VGVV  V   +   L+   GR+ L   S I   ++ +F +   FY       +  + W 
Sbjct:   677 IVGVVNFVATFIGILLIDRAGRKILLYASDIAM-VLTLFVLGGFFYCKAHGPDVSHLGW- 734

Query:   307 MTAEIFPLEIRGIAQG 322
             +    F + I G + G
Sbjct:   735 LPLTCFVVYILGFSVG 750

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|F1NDA6 SLC2A8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 173 (66.0 bits), Expect = 3.3e-20, Sum P(2) = 3.3e-20
 Identities = 69/267 (25%), Positives = 130/267 (48%)

Query:    22 GLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSGYYTQLIMTGQIEKSLIPVFCILFYVAIS 81
             G+L   L+   GR+   M   +        SGY   +I++ Q       V+ + F   ++
Sbjct:    84 GILGGYLVDKIGRKLSLMLCSIPFV-----SGYI--VIISAQ------NVWMLYFGRILT 130

Query:    82 VIAMGPSPAIV--YITEVARPDLRGALICIGPSITSLGMVIVYALGAVLHWRTVAWLS-- 137
              +A G +  +V  YI+E++  D+RG L      +   G++  Y  G  L W  +A L   
Sbjct:   131 GLASGITSLVVPVYISEISHTDVRGMLGSFVQLMVVTGILGAYIAGLTLKWHWLAVLCSF 190

Query:   138 -----LAYIL-IP-SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQS 190
                  L ++L +P +P +LL++ +  +A+ +L++L   Y +    E E +++ +  E + 
Sbjct:   191 PPCVMLLFMLFMPETPRFLLDQKKRAEAIAALQFLRGPYVD---HEWECRQIEANVEEEG 247

Query:   191 LSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGSRMNVYLATVLV 250
             LS    K  ++    +PLL+  +L  LQQ+ GI   +FYA    ED   + +  +A+V+V
Sbjct:   248 LSLFEFKNPSI---YRPLLIGVILMFLQQVTGINAVMFYAETIFEDANFQ-DSRMASVVV 303

Query:   251 GVVRMVFGLLTSQLLRTYGRRSLTMFS 277
             G +++ F  + + ++   GR+ L   S
Sbjct:   304 GFIQVCFTAVAALIIDKTGRKVLLYVS 330

GO:0001666 "response to hypoxia" evidence=IEA

GO:0005355 "glucose transmembrane transporter activity" evidence=IEA

GO:0005536 "glucose binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0008286 "insulin receptor signaling pathway" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

UNIPROTKB|Q17NV8 Tret1 "Facilitated trehalose transporter Tret1" [Aedes aegypti (taxid:7159)]

 Score = 258 (95.9 bits), Expect = 2.7e-19, P = 2.7e-19
 Identities = 73/265 (27%), Positives = 136/265 (51%)

Query:    71 VFCILFYVAISVIAMG-PSPAI-VYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL 128
             V  +L   A+S  ++G  S ++ VY+ E  +P++RG L  +  +  ++G+++ +  G  +
Sbjct:   439 VAMVLVGRALSGFSVGVASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGKYM 498

Query:   129 HWRTVAWLSLAY--------ILIP-SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQEL 179
              W  +A+L  A          LIP +P W +++GR ++A K+L++L     +V  + + +
Sbjct:   499 DWSGLAFLGAALPIPFLLLMFLIPETPRWYVSRGRDDRARKALQWLRGKKADVDPELKGI 558

Query:   180 KKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGS 239
              K +   E  +  + ++ ++  A  +KPLL+   L   QQL+GI   IFY VQ  +D GS
Sbjct:   559 IKSHQDAERHASQSAMLDLMKKAN-LKPLLISLGLMFFQQLSGINAVIFYTVQIFQDAGS 617

Query:   240 RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIEKSLIPVFCI--LFYVAISV 297
              ++  L T++VGVV  +   + + L+   GR+ L   S +   +I +  +   FYV  S 
Sbjct:   618 TIDENLCTIIVGVVNFIATFIATMLIDRLGRKMLLYISDVAM-IITLMTLGGFFYVKNSG 676

Query:   298 IGMLSIPWTMTAEIFPLEIRGIAQG 322
               +  + W   A  F + + G + G
Sbjct:   677 QDVSQVGWLPLAA-FVIYVLGFSLG 700

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

GO:0044459 "plasma membrane part" evidence=ISS

UNIPROTKB|B0WC46 Tret1 "Facilitated trehalose transporter Tret1" [Culex quinquefasciatus (taxid:7176)]

 Score = 252 (93.8 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 73/265 (27%), Positives = 136/265 (51%)

Query:    71 VFCILFYVAISVIAMG-PSPAI-VYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL 128
             V  +L   A+S  ++G  S ++ VY+ E  +P++RG L  +  +  ++G+++ +  G  +
Sbjct:   150 VAMVLVGRALSGFSVGVASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGNYM 209

Query:   129 HWRTVAWLS--------LAYILIP-SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQEL 179
              W  +A+L         +   LIP +P W +++GR ++A K+L++L     +V  + + +
Sbjct:   210 DWSELAFLGATLPVPFLILMFLIPETPRWYVSRGRDDRARKALQWLRGKKADVDPELKGI 269

Query:   180 KKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGS 239
              K +   E  +  + ++ ++   T +KPLL+   L   QQL+GI   IFY VQ  +D GS
Sbjct:   270 IKSHQDAERHASQSAMLDLLKK-TNLKPLLISLGLMFFQQLSGINAVIFYTVQIFQDAGS 328

Query:   240 RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIEKSLIPVFCI--LFYVAISV 297
              ++  L T++VGVV  +   + + L+   GR+ L   S I   +I +  +   FYV  + 
Sbjct:   329 TIDENLCTIIVGVVNFIATFIATLLIDRLGRKMLLYISDIAM-IITLMTLGGFFYVKNNG 387

Query:   298 IGMLSIPWTMTAEIFPLEIRGIAQG 322
               +  I W   A  F + + G + G
Sbjct:   388 GDVSHIGWLPLAS-FVIFVLGFSLG 411

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

GO:0044459 "plasma membrane part" evidence=ISS

UNIPROTKB|B4HNS1 Tret1-2 "Facilitated trehalose transporter Tret1-2 homolog" [Drosophila sechellia (taxid:7238)]

 Score = 248 (92.4 bits), Expect = 1.3e-18, P = 1.3e-18
 Identities = 71/267 (26%), Positives = 131/267 (49%)

Query:    67 SLIPVFCILFYVAISV-IAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALG 125
             ++I + C  F     V IA    P  VY+ E  +P++RG L  +  ++ ++G+++ Y  G
Sbjct:   121 NVIMILCGRFLTGFCVGIASLSLP--VYLGETLQPEVRGTLGLLPTALGNIGILVCYVAG 178

Query:   126 AVLHWRTVAWLSLAY--------ILIP-SPVWLLNKGRANQALKSLKYLARNYKEVKNKE 176
             + ++W  +A+L  A         I+IP +P W +N+G+  +A K+LK+L     +V+ + 
Sbjct:   179 SFMNWSILAFLGAALPVPFLILMIIIPETPRWFVNRGQEERARKALKWLRGKEADVEPEL 238

Query:   177 QELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLED 236
             ++L +  +  ++Q+     +++      +KPL +   L   QQ +GI   IFY VQ  +D
Sbjct:   239 KDLMQSQAEADSQATRNTCLELFKRIN-LKPLSISLGLMFFQQFSGINAVIFYTVQIFKD 297

Query:   237 MGSRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIEKSL-IPVFCILFYVAI 295
              GS ++  L T++VG+V      +   L+   GR+ L   S I   L + +    FY   
Sbjct:   298 AGSTIDSNLCTIIVGIVNFFATFMGIILIDRLGRKILLYVSDIAMILTLSILGGFFYCKA 357

Query:   296 SVIGMLSIPWTMTAEIFPLEIRGIAQG 322
                 +  + W +    F + I G + G
Sbjct:   358 HGPDVSHLGW-LPLSCFVIYILGFSLG 383

GO:0044459 "plasma membrane part" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|B4QBN3 Tret1-2 "Facilitated trehalose transporter Tret1-2 homolog" [Drosophila simulans (taxid:7240)]

 Score = 248 (92.4 bits), Expect = 1.3e-18, P = 1.3e-18
 Identities = 71/267 (26%), Positives = 131/267 (49%)

Query:    67 SLIPVFCILFYVAISV-IAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALG 125
             ++I + C  F     V IA    P  VY+ E  +P++RG L  +  ++ ++G+++ Y  G
Sbjct:   121 NVIMILCGRFLTGFCVGIASLSLP--VYLGETLQPEVRGTLGLLPTALGNIGILVCYVAG 178

Query:   126 AVLHWRTVAWLSLAY--------ILIP-SPVWLLNKGRANQALKSLKYLARNYKEVKNKE 176
             + ++W  +A+L  A         I+IP +P W +N+G+  +A K+LK+L     +V+ + 
Sbjct:   179 SFMNWSMLAFLGAALPVPFLILMIIIPETPRWFVNRGQEERARKALKWLRGKEADVEPEL 238

Query:   177 QELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLED 236
             ++L +  +  ++Q+     +++      +KPL +   L   QQ +GI   IFY VQ  +D
Sbjct:   239 KDLMQSQAEADSQARRNTCLELFKRIN-LKPLSISLGLMFFQQFSGINAVIFYTVQIFKD 297

Query:   237 MGSRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIEKSL-IPVFCILFYVAI 295
              GS ++  L T++VG+V      +   L+   GR+ L   S I   L + +    FY   
Sbjct:   298 AGSTIDSNLCTIIVGIVNFFATFMGILLIDRLGRKILLYISDIAMILTLSILGGFFYCKA 357

Query:   296 SVIGMLSIPWTMTAEIFPLEIRGIAQG 322
                 +  + W +    F + I G + G
Sbjct:   358 HGPDVSHLGW-LPLTCFVIYILGFSLG 383

GO:0044459 "plasma membrane part" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|Q7PIR5 Tret1 "Facilitated trehalose transporter Tret1" [Anopheles gambiae (taxid:7165)]

 Score = 249 (92.7 bits), Expect = 2.9e-18, P = 2.9e-18
 Identities = 71/264 (26%), Positives = 134/264 (50%)

Query:    71 VFCILFYVAISVIAMG-PSPAI-VYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL 128
             V  +L   A+S + +G  S ++ VY+ E  +P++RG L  +  +  ++G+++ +  G  L
Sbjct:   426 VAMVLVGRALSGLCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGKYL 485

Query:   129 HWRTVAWLSLAY--------ILIP-SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQEL 179
              W  +A+L  A          LIP +P W +++ R ++A K+L++L     +V+ + + +
Sbjct:   486 DWSGLAFLGAALPIPFLLLMFLIPETPRWYVSRNREDRARKALQWLRGRKADVEPELKGI 545

Query:   180 KKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGS 239
              K +   E  + S+ ++ ++  A  +KPLL+   L   QQL+GI   IFY VQ  +  GS
Sbjct:   546 SKSHQDAERHASSSAMLDLLNKAN-LKPLLISLGLMFFQQLSGINAVIFYTVQIFQSAGS 604

Query:   240 RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIEKSL-IPVFCILFYVAISVI 298
              ++  L T++VGVV  +   + + L+   GR+ L   S +   + +      FY+  +  
Sbjct:   605 TIDEKLCTIIVGVVNFIATFIATVLIDRLGRKILLYISDVAMIITLMTLGTFFYMKNNGD 664

Query:   299 GMLSIPWTMTAEIFPLEIRGIAQG 322
              +  I W   A  F + + G + G
Sbjct:   665 DVSEIGWLPLAA-FVVFVVGFSLG 687

GO:0015574 "trehalose transmembrane transporter activity" evidence=IDA

GO:0015771 "trehalose transport" evidence=IDA

GO:0044459 "plasma membrane part" evidence=IDA

GO:0015767 "lactose transport" evidence=IDA

GO:0015768 "maltose transport" evidence=IDA

GO:0015770 "sucrose transport" evidence=IDA

UNIPROTKB|A9ZSY2 Tret1 "Facilitated trehalose transporter Tret1" [Apis mellifera ligustica (taxid:7469)]

 Score = 245 (91.3 bits), Expect = 3.1e-18, P = 3.1e-18
 Identities = 75/311 (24%), Positives = 150/311 (48%)

Query:     5 MNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSGYYTQLIMTGQI 64
             M +++ +++  +  ++ G++    +   GRR+  + + L            T + M   +
Sbjct:    84 MAMWIGSIMP-LSALIGGIIGGPCIEYIGRRNTILSTALPFLAGWLFIALATNVAMI-LV 141

Query:    65 EKSLIPVFCILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYAL 124
              +S+   FC    V ++ +++   P  VY+ E  +P++RG+L  +     + G+++ +  
Sbjct:   142 GRSICG-FC----VGVASLSL---P--VYLGESIQPEVRGSLGLLPTVFGNSGILMCFTA 191

Query:   125 GAVLHWRTVAWLS--------LAYILIP-SPVWLLNKGRANQALKSLKYLARNYKEVKNK 175
             G  L WR +A L         +   LIP +P W ++KG+  +A KSL++L     ++  +
Sbjct:   192 GMYLAWRNLALLGACIPIIFLILMFLIPETPRWYISKGKIKEARKSLQWLRGKTADISEE 251

Query:   176 EQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLE 235
                ++KM+   E  +    LI++      IKP+ +   L   QQ +GI   IFY VQ  +
Sbjct:   252 LDSIQKMHIESERIATEGALIELFRK-NHIKPVFISLGLMFFQQFSGINAVIFYTVQIFK 310

Query:   236 DMGSRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIEKSL-IPVFCILFYVA 294
             D GS ++  L+T++VG+V  +   + + ++   GR+ L   S I   + +  F   FYV 
Sbjct:   311 DSGSTVDENLSTIIVGLVNFISTFVAAMIIDRLGRKMLLYISSILMCITLFTFGTFFYVK 370

Query:   295 ISVIGMLSIPW 305
               ++ + +  W
Sbjct:   371 -ELMDVTAFGW 380

GO:0015574 "trehalose transmembrane transporter activity" evidence=IDA

GO:0015771 "trehalose transport" evidence=IDA

GO:0044459 "plasma membrane part" evidence=IDA

GO:0015767 "lactose transport" evidence=IDA

GO:0015768 "maltose transport" evidence=IDA

GO:0015770 "sucrose transport" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	420
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	4e-31
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	3e-27
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	4e-24
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	3e-08
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-06
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	2e-05
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	4e-05
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	7e-04

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  123 bits (311), Expect = 4e-31
 Identities = 101/408 (24%), Positives = 170/408 (41%), Gaps = 52/408 (12%)

Query: 16  VVRMVFGLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSGYYTQLIMTGQIEKSLIPVFCIL 75
           V  ++  L   +L   +GR+   +   +   +          L+      KS   +    
Sbjct: 57  VGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIG--------ALLQGFAKGKSFYMLIVGR 108

Query: 76  FYVAISV-IAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL------ 128
             V + V       P  +YI+E+A   LRGAL  +     + G+++   +G  L      
Sbjct: 109 VIVGLGVGGISVLVP--MYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNS 166

Query: 129 -HWRTVAWLSLAY--------ILIP-SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQE 178
             WR    L            + +P SP WL+ KG+  +A   L  L R   +V  + QE
Sbjct: 167 DGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKL-RGVSDVDQEIQE 225

Query: 179 LKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMG 238
            K     +  ++  A  +++    T  + LL+  +L   QQL GI    +Y+    E +G
Sbjct: 226 EKDSLE-RSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLG 284

Query: 239 SRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFS--------------------Q 278
              +  L T++VGVV  VF  +   L+  +GRR L +                       
Sbjct: 285 LS-DSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKS 343

Query: 279 IEKSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQY 338
               ++ +  IL ++A   +G   +PW + +E+FPL +R  A  +      +  F     
Sbjct: 344 KGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFL 403

Query: 339 YPWFKDSVGGSAMVQWFFALISVISIVYVYIFLPETHGRTLLEIEEYF 386
           +P    ++GG   V   FA + V+ I++V+ F+PET GRTL EI+E F
Sbjct: 404 FPIITGAIGG--YVFLVFAGLLVLFILFVFFFVPETKGRTLEEIDELF 449

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score =  112 bits (283), Expect = 3e-27
 Identities = 94/410 (22%), Positives = 160/410 (39%), Gaps = 59/410 (14%)

Query: 19  MVFGLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSGYYTQLIMTGQIEKSLIPVFCILFYV 78
            +  L    L   +GR+   +   L   +     G            + LI V  +L  +
Sbjct: 85  FIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAA----FALSVEMLI-VGRVLLGI 139

Query: 79  AISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALG--AVLHWRTVAW- 135
            + + +       +Y++E+A   LRGAL  +     + G+++ Y  G   V    T+ W 
Sbjct: 140 GVGIASA---LVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWR 196

Query: 136 LSLAYILIP-------------SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKM 182
           + L   LIP             SP WL+ KGR  +A KSL       +    +++EL   
Sbjct: 197 IPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSL----ARLRGTSGEDKELLDE 252

Query: 183 NSTKENQSLSARLIKMVTMAT-------GIKPLLVITVLFALQQLAGIYITIFYAVQFLE 235
               + +    +     +  +         + L +  VL   QQ  GI   ++Y+    E
Sbjct: 253 LELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFE 312

Query: 236 DMGSRMN-VYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMF------------------ 276
           + G   +  +L +++VG V   F  +   L+  +GRR L +                   
Sbjct: 313 NAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGAS 372

Query: 277 ----SQIEKSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILM 332
               S      + +  IL ++A   +G   +PW + +EIFPL +R     +      +  
Sbjct: 373 FVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLAN 432

Query: 333 FFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFLPETHGRTLLEI 382
           F     +P       G   V  FF  ++V+ +++VY FLPET GRTL EI
Sbjct: 433 FIVGFLFP-TMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score =  103 bits (259), Expect = 4e-24
 Identities = 100/432 (23%), Positives = 178/432 (41%), Gaps = 74/432 (17%)

Query: 10  ATVLVGVVRMVFGLLTSQLLRTYGRRS-------LTMFSGLGMAVCMTTSGYYTQLIMT- 61
           A+ L+G +  + G L       +GRR        L   S LG          + +   T 
Sbjct: 62  ASALIGCI--IGGALGGYCSNRFGRRDSLKIAAVLFFISALG--------SAWPEFGFTS 111

Query: 62  -GQIEKSLIPVFCILFYVAISVIAMGPSPAI--VYITEVARPDLRGALICIGPSITSLGM 118
            G      +P F  + Y  I  I +G +  +  +YI E+A   +RG L+         G 
Sbjct: 112 IGPDNTGYVPEF--VIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQ 169

Query: 119 VIVY------ALGAVLHW-RTVAW--------------LSLAYILIPSPVWLLNKGRANQ 157
           ++VY      A      W  T  W              L L Y +  +P +L+++G+  Q
Sbjct: 170 LVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQ 229

Query: 158 ALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFAL 217
           A   L+ +  N        QE+K  +S    +    +L     +  G+  +++  +L   
Sbjct: 230 AEGILRKIMGN-TLATQALQEIK--HSLDHGRKTGGKL-----LMFGVGVIVIGVMLSVF 281

Query: 218 QQLAGIYITIFYAVQFLEDMGSRMNV-YLATVLVGVVRMVFGLLTSQLLRTYGRRSL--- 273
           QQ  GI + ++YA +  + +G+  ++  L T++VGV+ + F +L    +  +GR+ L   
Sbjct: 282 QQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQII 341

Query: 274 -------------TMFSQIEKSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIA 320
                        T F      ++ +  +LFYVA   +    + W + +EIFP  IRG A
Sbjct: 342 GALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKA 401

Query: 321 QGLTFCLAHILMFFALQYYPWFKDSVGGSA-----MVQWFFALISVISIVYVYIFLPETH 375
             +      I  +F    +P    +    A        W +  + V++ ++++ F+PET 
Sbjct: 402 LAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 461

Query: 376 GRTLLEIEEYFE 387
           G+TL E+E  +E
Sbjct: 462 GKTLEEMEALWE 473

Length = 479

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 76/404 (18%), Positives = 152/404 (37%), Gaps = 61/404 (15%)

Query: 9   LATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSGYYTQLIMTGQIEKSL 68
           L      V  ++   +   L   +GR+ + + S L  AV    + +              
Sbjct: 131 LTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNY---------- 180

Query: 69  IPVFCILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALG-AV 127
             VF +   +    I      A+V  TE      R  +  +     SLG+V++  +   +
Sbjct: 181 -TVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFI 239

Query: 128 LHWR---------TVAWLSLAYILIPSPVWLLNKGRANQALKSLKYLARNYKEVKNKEQE 178
             WR         T  +  L++ +  SP WL+++GR  +ALK L+ +A+     K    E
Sbjct: 240 PDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAK--INGKKLPAE 297

Query: 179 LKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMG 238
           +  ++  K+  S   +   +    T       + ++      A  Y  +   +  L    
Sbjct: 298 VLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLG--- 354

Query: 239 SRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQI---EKSLIPVFCI--LFYV 293
              N+YL   + G+V +   L+T  L+   GRR     S +      L+ +F    L+++
Sbjct: 355 --GNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFL 412

Query: 294 AISVI----GMLSIPWTM----TAEIFPLEIRGIAQGLTFCLAHI------LMFFALQYY 339
             ++       ++  + M    TAE++P  +R +  G+   +A +       + +  + +
Sbjct: 413 RTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKW 472

Query: 340 PWFKDSVGGSAMVQWFFALISVISIVY--VYIFLPETHGRTLLE 381
            +                L   ++++   + +FLPET G  L E
Sbjct: 473 LF------------LPLVLFGGLALLAGILTLFLPETKGVPLPE 504

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 58/382 (15%), Positives = 108/382 (28%), Gaps = 76/382 (19%)

Query: 3   SRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSGYYTQLIMTG 62
           S     L      +   +  LL   L   +GRR + +   L  A+      + + L +  
Sbjct: 32  SASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWL-- 89

Query: 63  QIEKSLIPVFCILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVY 122
                      +  ++           A   I E   P  RG  + +  +   LG ++  
Sbjct: 90  ---------LLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGP 140

Query: 123 ALGAVLHWRTVAWLSLAYILIPSPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKM 182
            LG +L            + I   +  L                                
Sbjct: 141 LLGGLLAESLGWRWLFLILAILGLLLAL-------------------------------- 168

Query: 183 NSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMG--SR 240
                             +   +  LL++  L       G Y  + Y   +L+++   S 
Sbjct: 169 ------------------LLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSA 210

Query: 241 MNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTM------------FSQIEKSLIPVFC 288
               L   L G+  ++  LL   L    GRR L +               +  SL  +  
Sbjct: 211 AEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLV 270

Query: 289 ILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGG 348
            L  +   +        T+ +E+ P E RG A GL      +             D+ G 
Sbjct: 271 ALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGY 330

Query: 349 SAMVQWFFALISVISIVYVYIF 370
              V    A +++++ + + + 
Sbjct: 331 G-GVFLILAALALLAALLLLLL 351

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 4/101 (3%)

Query: 6   NVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSGYYTQLIMTGQIE 65
           +  L T++VGVV  VF  +   L+  +GRR L +    GMA+C    G    L +     
Sbjct: 287 DSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLG-VALLGVAKSKG 345

Query: 66  KSLIPVFCILFYVAISVIAMGPSPAI-VYITEVARPDLRGA 105
             ++ +  IL ++A    A+G  P   V ++E+    +R  
Sbjct: 346 AGIVAIVFILLFIA--FFALGWGPVPWVIVSELFPLGVRPK 384

Length = 449

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 9/81 (11%)

Query: 9   LATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSG--YYTQLIMTGQIEK 66
           L T++VGV+ + F +L    +  +GR+ L +   LGMA+ M + G  +YTQ         
Sbjct: 310 LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA-------P 362

Query: 67  SLIPVFCILFYVAISVIAMGP 87
            ++ +  +LFYVA   ++ GP
Sbjct: 363 GIVALLSMLFYVAAFAMSWGP 383

Length = 479

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 2/99 (2%)

Query: 8   YLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSGYYTQLIMTGQIEK- 66
           +L +++VG V   F  +   L+  +GRR L +    GMA+C+   G      +TG  +  
Sbjct: 322 FLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSS 381

Query: 67  SLIPVFCILFYVAISVIAMGPSPAIVYITEVARPDLRGA 105
             + +  IL ++A   +  GP P  V ++E+    LR  
Sbjct: 382 GNVAIVFILLFIAFFAMGWGPVPW-VIVSEIFPLSLRPK 419

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	420
KOG0569|consensus	485		100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
KOG0254|consensus	513		100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
TIGR00898	505	2A0119 cation transport protein.	100.0
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	100.0
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.98
PRK09705	393	cynX putative cyanate transporter; Provisional	99.98
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.98
PRK12307	426	putative sialic acid transporter; Provisional	99.98
TIGR00893	399	2A0114 d-galactonate transporter.	99.97
PRK03545	390	putative arabinose transporter; Provisional	99.97
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.97
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.97
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.97
PRK09952	438	shikimate transporter; Provisional	99.97
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.97
TIGR00891	405	2A0112 putative sialic acid transporter.	99.97
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.97
PRK15075	434	citrate-proton symporter; Provisional	99.97
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.97
PRK03893	496	putative sialic acid transporter; Provisional	99.97
KOG0255|consensus	521		99.97
PLN00028	476	nitrate transmembrane transporter; Provisional	99.97
PRK10489	417	enterobactin exporter EntS; Provisional	99.97
PRK05122	399	major facilitator superfamily transporter; Provisi	99.96
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.96
PRK03699	394	putative transporter; Provisional	99.96
PRK10091	382	MFS transport protein AraJ; Provisional	99.96
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.96
KOG0252|consensus	538		99.96
PRK12382	392	putative transporter; Provisional	99.96
KOG2532|consensus	466		99.96
TIGR00900	365	2A0121 H+ Antiporter protein.	99.96
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.96
TIGR00895	398	2A0115 benzoate transport.	99.96
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.96
PRK03633	381	putative MFS family transporter protein; Provision	99.96
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.96
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.96
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.95
KOG0253|consensus	528		99.95
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.95
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.95
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.95
PRK09874	408	drug efflux system protein MdtG; Provisional	99.95
PRK10504	471	putative transporter; Provisional	99.95
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.95
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.95
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.95
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.95
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.94
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.94
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.94
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.94
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.94
KOG1330|consensus	493		99.94
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.94
PRK11043	401	putative transporter; Provisional	99.94
PRK10054	395	putative transporter; Provisional	99.94
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.93
PRK10133	438	L-fucose transporter; Provisional	99.93
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.93
PRK15011	393	sugar efflux transporter B; Provisional	99.93
PRK09528	420	lacY galactoside permease; Reviewed	99.93
PRK11010	491	ampG muropeptide transporter; Validated	99.93
KOG2533|consensus	495		99.92
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.92
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.91
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.91
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.91
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.91
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.91
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.91
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.91
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.91
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.9
PRK11902	402	ampG muropeptide transporter; Reviewed	99.9
KOG2504|consensus	509		99.9
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.89
TIGR00901	356	2A0125 AmpG-related permease.	99.89
KOG3764|consensus	464		99.89
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.88
KOG2615|consensus	451		99.88
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.88
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.88
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.87
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.86
TIGR00805	633	oat sodium-independent organic anion transporter.	99.85
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.85
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.85
PRK10429	473	melibiose:sodium symporter; Provisional	99.84
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.83
PTZ00207	591	hypothetical protein; Provisional	99.83
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.82
PRK09669	444	putative symporter YagG; Provisional	99.81
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.79
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.78
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.77
PF13347	428	MFS_2: MFS/sugar transport protein	99.76
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.76
PRK11462	460	putative transporter; Provisional	99.75
PRK09848	448	glucuronide transporter; Provisional	99.75
KOG4686|consensus	459		99.75
COG2211	467	MelB Na+/melibiose symporter and related transport	99.74
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.74
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.74
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.56
KOG2563|consensus	480		99.54
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.53
TIGR00895	398	2A0115 benzoate transport.	99.51
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.49
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.48
KOG2325|consensus	488		99.46
PRK11663	434	regulatory protein UhpC; Provisional	99.46
KOG3626|consensus	735		99.44
PRK10054	395	putative transporter; Provisional	99.44
PRK03545	390	putative arabinose transporter; Provisional	99.44
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.44
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.43
TIGR00893	399	2A0114 d-galactonate transporter.	99.43
KOG2816|consensus	463		99.43
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.41
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.41
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.41
TIGR00891	405	2A0112 putative sialic acid transporter.	99.39
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.39
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.37
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.37
PRK10504	471	putative transporter; Provisional	99.36
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.35
PRK10091	382	MFS transport protein AraJ; Provisional	99.35
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.35
TIGR00900	365	2A0121 H+ Antiporter protein.	99.35
PRK09874	408	drug efflux system protein MdtG; Provisional	99.34
PRK10642	490	proline/glycine betaine transporter; Provisional	99.34
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.33
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.33
PLN00028	476	nitrate transmembrane transporter; Provisional	99.33
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.33
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.32
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.32
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.32
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.31
PRK12307	426	putative sialic acid transporter; Provisional	99.31
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.31
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.31
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.29
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.29
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.29
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.26
KOG1330|consensus	493		99.26
PRK03699	394	putative transporter; Provisional	99.26
PRK03893	496	putative sialic acid transporter; Provisional	99.25
PRK11043	401	putative transporter; Provisional	99.25
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.23
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.23
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.22
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.21
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.2
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.2
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.19
KOG2615|consensus	451		99.19
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.19
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.19
PRK12382	392	putative transporter; Provisional	99.18
PRK10489	417	enterobactin exporter EntS; Provisional	99.18
KOG3098|consensus	461		99.18
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.17
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.17
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.17
PRK05122	399	major facilitator superfamily transporter; Provisi	99.16
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.16
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.14
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.13
PRK09705	393	cynX putative cyanate transporter; Provisional	99.11
PRK03633	381	putative MFS family transporter protein; Provision	99.11
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.1
PRK09528	420	lacY galactoside permease; Reviewed	99.08
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.08
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.08
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.06
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.03
PRK15011	393	sugar efflux transporter B; Provisional	99.03
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.02
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.02
TIGR00898	505	2A0119 cation transport protein.	99.01
KOG0569|consensus	485		99.0
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.99
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.98
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.98
TIGR00901	356	2A0125 AmpG-related permease.	98.97
PTZ00207	591	hypothetical protein; Provisional	98.96
PRK15075	434	citrate-proton symporter; Provisional	98.96
KOG3764|consensus	464		98.96
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.96
PRK11902	402	ampG muropeptide transporter; Reviewed	98.95
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.94
PRK11010	491	ampG muropeptide transporter; Validated	98.93
PRK09952	438	shikimate transporter; Provisional	98.93
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.92
PRK10133	438	L-fucose transporter; Provisional	98.91
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.91
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.9
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.9
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.89
KOG0255|consensus	521		98.86
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.86
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.85
TIGR00805	633	oat sodium-independent organic anion transporter.	98.83
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.79
KOG2532|consensus	466		98.72
KOG2533|consensus	495		98.7
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.68
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.62
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.61
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.61
KOG2504|consensus	509		98.59
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.55
KOG0254|consensus	513		98.54
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.49
PRK09669	444	putative symporter YagG; Provisional	98.48
PRK09848	448	glucuronide transporter; Provisional	98.47
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.45
KOG0637|consensus	498		98.44
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.44
KOG2816|consensus	463		98.43
KOG0253|consensus	528		98.39
PRK11462	460	putative transporter; Provisional	98.37
PRK10429	473	melibiose:sodium symporter; Provisional	98.37
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.36
PF13347	428	MFS_2: MFS/sugar transport protein	98.34
KOG3762|consensus	618		98.33
KOG4686|consensus	459		98.31
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.31
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.31
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.28
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.28
COG0477	338	ProP Permeases of the major facilitator superfamil	98.28
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.23
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.21
KOG2325|consensus	488		98.17
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.16
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.14
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.13
KOG0252|consensus	538		98.01
COG2211	467	MelB Na+/melibiose symporter and related transport	98.0
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.92
KOG3810|consensus	433		97.9
KOG3574|consensus	510		97.78
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	97.74
KOG4332|consensus	454		97.71
PF12832	77	MFS_1_like: MFS_1 like family	97.71
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.62
KOG3762|consensus	618		97.62
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.4
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	97.4
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	97.3
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.24
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.02
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.99
KOG2563|consensus	480		96.94
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.74
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	96.67
PF12832	77	MFS_1_like: MFS_1 like family	96.65
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	96.63
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	96.44
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.31
KOG3626|consensus	735		96.28
KOG0637|consensus	498		96.28
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.01
COG0477	338	ProP Permeases of the major facilitator superfamil	95.8
COG3202	509	ATP/ADP translocase [Energy production and convers	95.62
PRK03612	521	spermidine synthase; Provisional	94.73
KOG1237|consensus	571		94.65
COG3202	509	ATP/ADP translocase [Energy production and convers	94.63
KOG3098|consensus	461		94.16
PRK03612	521	spermidine synthase; Provisional	92.92
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	92.75
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	92.24
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	92.06
KOG2601|consensus	503		92.05
KOG3097|consensus	390		90.82
KOG4332|consensus	454		89.1
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	89.1
KOG1479|consensus	406		88.69
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	88.52
KOG1237|consensus	571		86.61
COG5336	116	Uncharacterized protein conserved in bacteria [Fun	83.32
KOG3574|consensus	510		80.98
KOG1479|consensus	406		80.14

>KOG0569|consensus

Probab=100.00  E-value=2.1e-40  Score=301.52  Aligned_cols=367  Identities=25%  Similarity=0.383  Sum_probs=318.5

Q ss_pred             hHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh-----HHHHHhhccccccchhHHHHHHHHH
Q psy6665           7 VYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY-----TQLIMTGQIEKSLIPVFCILFYVAI   80 (420)
Q Consensus         7 ~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~r~~~~~~~~~~~~~l~G~   80 (420)
                      .+...++++.+|.++|++. |.++||+|||..+.++.++..++.+++.++     +.+++++|            ++.|+
T Consensus        61 lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR------------~i~Gl  128 (485)
T KOG0569|consen   61 LWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGR------------LIVGL  128 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH------------HHHHH
Confidence            3778899999999999999 999999999999999999999999988887     89999999            99999


Q ss_pred             HhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh------hhHHHHHhHhhhcccc---------c
Q psy6665          81 SVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL------HWRTVAWLSLAYILIP---------S  145 (420)
Q Consensus        81 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~------~wr~~f~~~~~~~~~~---------~  145 (420)
                      ..| ......+.|+.|..|++.||....+.+.+..+|..++..++..-      .|++.+.+..+++++.         +
T Consensus       129 ~~g-l~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PES  207 (485)
T KOG0569|consen  129 ACG-LSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPES  207 (485)
T ss_pred             HhH-HHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            999 88888999999999999999999999999999999997666443      6999998888876655         9


Q ss_pred             cceeee-cCcHHHHHHHHHHHhcchhhhhhhHHHHhh-hccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcch
Q psy6665         146 PVWLLN-KGRANQALKSLKYLARNYKEVKNKEQELKK-MNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGI  223 (420)
Q Consensus       146 ~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (420)
                      |+|++. +++.+|+++.++.+++.+++.+..+++.+. ++.+.+++++.+..+.++ ++..|++..+.+.+....++++.
T Consensus       208 Pk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~-~~~lR~~~~i~~~v~~~qq~sGi  286 (485)
T KOG0569|consen  208 PKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLK-NPTLRRPLLIGIVVSFAQQFSGI  286 (485)
T ss_pred             cchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhc-CcchhHHHHHHHHHHHHHHhcCc
Confidence            999998 889999999999999876544443332211 222222235667888887 88899999999999999999999


Q ss_pred             hhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------------h-hHH
Q psy6665         224 YITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------------K-SLI  284 (420)
Q Consensus       224 ~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------------~-~~~  284 (420)
                      +...+|...++++.|+ ..++.......++...+.++++.++.||+|||++++.+..+                 . .|.
T Consensus       287 ~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~  366 (485)
T KOG0569|consen  287 NAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWL  366 (485)
T ss_pred             ceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            9999999999999999 88888999999999999999999999999999998888776                 1 122


Q ss_pred             ---HHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHH
Q psy6665         285 ---PVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISV  361 (420)
Q Consensus       285 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~  361 (420)
                         .+...+.+...+..|.+|+.+-+.+|++|++.|..+.++.....++..++....++.+.+..|  ...|.++.+.++
T Consensus       367 ~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g--~~~filF~i~~~  444 (485)
T KOG0569|consen  367 SYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG--PYVFILFVIPLA  444 (485)
T ss_pred             HHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--chhhHHHHHHHH
Confidence               345566677778889999999999999999999999999999999999999999999999999  488899999999


Q ss_pred             HHHHHhhhccccCCCCChHHHHHHhccc
Q psy6665         362 ISIVYVYIFLPETHGRTLLEIEEYFETS  389 (420)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (420)
                      +..+..++.+||||+|+..|+.+..++.
T Consensus       445 ~~~i~~~~~lPETkgr~~~eI~~~~~~~  472 (485)
T KOG0569|consen  445 IFLIYLYRYLPETKGRTPYEIIEELEKR  472 (485)
T ss_pred             HHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence            9999999999999999999887776544

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=3.9e-34  Score=272.87  Aligned_cols=364  Identities=20%  Similarity=0.366  Sum_probs=248.7

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--------------HHHHHhhcccc
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--------------TQLIMTGQIEK   66 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--------------~~~~~~~r~~~   66 (420)
                      +.+.....+..+++.++.++++++ |+++||+|||++++++.+++.++.+.+++.              ++.+++.|   
T Consensus        51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R---  127 (479)
T PRK10077         51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYR---  127 (479)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHH---
Confidence            455667788999999999999999 999999999999999999999988877752              45678999   


Q ss_pred             ccchhHHHHHHHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhh------------hhhHHHH
Q psy6665          67 SLIPVFCILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAV------------LHWRTVA  134 (420)
Q Consensus        67 ~~~~~~~~~~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~------------~~wr~~f  134 (420)
                               +++|++.| ...+...++++|++|+++|++++++.+.+..+|..+++.++..            .+||++|
T Consensus       128 ---------~l~G~~~g-~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f  197 (479)
T PRK10077        128 ---------IIGGIGVG-LASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMF  197 (479)
T ss_pred             ---------HHHhhhHh-HHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHH
Confidence                     99999999 7777799999999999999999999999999999988776542            3799999


Q ss_pred             HhHhhhccccccceeeecC---------cHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhh-hhhhHHHHHhhcccc
Q psy6665         135 WLSLAYILIPSPVWLLNKG---------RANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQ-SLSARLIKMVTMATG  204 (420)
Q Consensus       135 ~~~~~~~~~~~~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  204 (420)
                      ++.+++.++.....+..++         +.+++++...+..+.+....    ..  ++.++..+ ++......+   ...
T Consensus       198 ~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~---~~~  268 (479)
T PRK10077        198 ASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQ----AL--QEIKHSLDHGRKTGGKLL---MFG  268 (479)
T ss_pred             HHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHH----HH--HHHHHHHHHhhhhhhhhc---chh
Confidence            9877666554111111222         22222221221111110000    00  00000000 000000000   000


Q ss_pred             chHHHHHHHHHHHHHhcchhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc---
Q psy6665         205 IKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE---  280 (420)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~---  280 (420)
                      ............+.+..+.+...++.|.+.++.|. ...........++..+++.++.++++||+|||+.+..+..+   
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v  348 (479)
T PRK10077        269 VGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAI  348 (479)
T ss_pred             HHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHH
Confidence            11112222223334444556677888998888787 55566666778888999999999999999999988776655   


Q ss_pred             ----------hh---HHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHH----
Q psy6665         281 ----------KS---LIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFK----  343 (420)
Q Consensus       281 ----------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~----  343 (420)
                                .+   ......+.++..++..++.|..+.++.|.+|++.|+++.|+.+...+++.++++.+.+.+.    
T Consensus       349 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~  428 (479)
T PRK10077        349 GMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSW  428 (479)
T ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccc
Confidence                      00   0111122223333333445777899999999999999999999999999999987776554    


Q ss_pred             --HhcCcchHHHHHHHHHHHHHHHHhhhccccCCCCChHHHHHHhcc
Q psy6665         344 --DSVGGSAMVQWFFALISVISIVYVYIFLPETHGRTLLEIEEYFET  388 (420)
Q Consensus       344 --~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (420)
                        +..+ +...+++++++++++.++.+++.||+++++.+|.++..++
T Consensus       429 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~  474 (479)
T PRK10077        429 LVAHFH-NGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEP  474 (479)
T ss_pred             hhhhcc-CccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhh
Confidence              4666 6777888888888888777778899999888877665543

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=4.8e-34  Score=276.56  Aligned_cols=358  Identities=15%  Similarity=0.163  Sum_probs=262.2

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHHH
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFYV   78 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l~   78 (420)
                      +.+.....+..+++.+|.++++++ |+++||+|||++++++.++.+++.++++++  ++.++++|            ++.
T Consensus       198 gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R------------~l~  265 (742)
T TIGR01299       198 CIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCR------------LLS  265 (742)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH------------HHH
Confidence            456667778889999999999999 999999999999999999999999999888  89999999            999


Q ss_pred             HHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh-----------------hhHHHHHhHhhhc
Q psy6665          79 AISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL-----------------HWRTVAWLSLAYI  141 (420)
Q Consensus        79 G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~-----------------~wr~~f~~~~~~~  141 (420)
                      |++.+ ...+...+++.|++|+++|++.+++...++.+|.++++.++..+                 +||+.+++.+++.
T Consensus       266 G~g~g-~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~  344 (742)
T TIGR01299       266 GFGIG-GAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPC  344 (742)
T ss_pred             HHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHH
Confidence            99999 66677999999999999999999999999999999888755332                 5999988877666


Q ss_pred             ccc---------ccceeeecCcHHHHHHHHHHHhcchhhh---hhhH---HHHhhhcc-------chhh---------hh
Q psy6665         142 LIP---------SPVWLLNKGRANQALKSLKYLARNYKEV---KNKE---QELKKMNS-------TKEN---------QS  190 (420)
Q Consensus       142 ~~~---------~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~-------~~~~---------~~  190 (420)
                      ++.         +|+|+..+++.+++.+.++++++.+...   +...   ++.+....       ++..         +.
T Consensus       345 ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (742)
T TIGR01299       345 VFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRA  424 (742)
T ss_pred             HHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhh
Confidence            544         8999999999999988888886543211   0000   00000000       0000         00


Q ss_pred             h-------hhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhHHHHHHhh--------------------------
Q psy6665         191 L-------SARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDM--------------------------  237 (420)
Q Consensus       191 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------  237 (420)
                      +       .+++++  +++.++++.++....+++..+ +++.+..|+|.++.+.                          
T Consensus       425 ~~~~~~~~~~~~~l--f~~~~~~~tl~l~~~wf~~~~-~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  501 (742)
T TIGR01299       425 LSEGGGIWGNFLRC--FNPEVREITIKLMGVWFTLSF-GYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTL  501 (742)
T ss_pred             hhhhhhHHHHHHHH--cCccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccch
Confidence            0       012222  355566666666666555444 6888999999875431                          


Q ss_pred             ----------------CC-----c--------------------------------------------------------
Q psy6665         238 ----------------GS-----R--------------------------------------------------------  240 (420)
Q Consensus       238 ----------------g~-----~--------------------------------------------------------  240 (420)
                                      |+     .                                                        
T Consensus       502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  581 (742)
T TIGR01299       502 ENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKE  581 (742)
T ss_pred             hhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCC
Confidence                            00     0                                                        


Q ss_pred             -------------chHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHHHHHHH
Q psy6665         241 -------------MNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILFYVAIS  296 (420)
Q Consensus       241 -------------~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~  296 (420)
                                   ...+....+..++.+++.++.++++||+|||+++..+.++           .+...++...++..++
T Consensus       582 ~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~  661 (742)
T TIGR01299       582 GCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGL  661 (742)
T ss_pred             ccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence                         0113335566788999999999999999999998777665           1112222222233333


Q ss_pred             hhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhccccCCC
Q psy6665         297 VIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFLPETHG  376 (420)
Q Consensus       297 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (420)
                      ..+..+..+++++|++|++.|++++|+.+...++|++++|++.+.+.+. + ...++++.+++.++++++.+ ++||+++
T Consensus       662 ~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~-~~~pf~i~a~~lll~~ll~~-~LPET~~  738 (742)
T TIGR01299       662 SIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-T-KAAPILFASAALACGGLLAL-KLPDTRG  738 (742)
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h-hHHHHHHHHHHHHHHHHHHH-hCCCCcc
Confidence            3445667779999999999999999999999999999999999988775 3 46778777777777666654 5699887


Q ss_pred             CC
Q psy6665         377 RT  378 (420)
Q Consensus       377 ~~  378 (420)
                      +.
T Consensus       739 ~~  740 (742)
T TIGR01299       739 QV  740 (742)
T ss_pred             cc
Confidence            64

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=1.8e-34  Score=275.59  Aligned_cols=357  Identities=15%  Similarity=0.160  Sum_probs=247.9

Q ss_pred             hHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--------HHHHHhhccccccchhHHHHHH
Q psy6665           7 VYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--------TQLIMTGQIEKSLIPVFCILFY   77 (420)
Q Consensus         7 ~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--------~~~~~~~r~~~~~~~~~~~~~l   77 (420)
                      +.....+.+.++.+++.++ |+++||+|||+++..+.+++.++.++++++        ++.+++.|            ++
T Consensus        57 ~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r------------~l  124 (502)
T TIGR00887        57 VSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWR------------FW  124 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHH------------HH
Confidence            4467888899999999999 999999999999999999999999888775        35789999            99


Q ss_pred             HHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhh---------------------------hhh
Q psy6665          78 VAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAV---------------------------LHW  130 (420)
Q Consensus        78 ~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~---------------------------~~w  130 (420)
                      +|++.+ ...+....++.|++|+++|++++++.+....+|..+++.++..                           .+|
T Consensus       125 ~G~~~g-~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W  203 (502)
T TIGR00887       125 LGVGIG-GDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMW  203 (502)
T ss_pred             HHHHHh-hhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccH
Confidence            999999 7777799999999999999999999999999998888876532                           169


Q ss_pred             HHHHHhHhhhcccc---------ccceeeecCcHH-HHHHHHHHHhcchhhhhhhHHHHhhhccchh-hhhhhhHHHHHh
Q psy6665         131 RTVAWLSLAYILIP---------SPVWLLNKGRAN-QALKSLKYLARNYKEVKNKEQELKKMNSTKE-NQSLSARLIKMV  199 (420)
Q Consensus       131 r~~f~~~~~~~~~~---------~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  199 (420)
                      |+++.+.++++++.         +|+|+..+++.+ ++.+.+.+..+.+.+.+.  ++.  ++.+++ ++.+.+++++++
T Consensus       204 R~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~l~~  279 (502)
T TIGR00887       204 RILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEP--DEV--EKASTAVEVPKASWSDFFT  279 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccCc--ccc--cchhccccchhhhHHHHHH
Confidence            99998887766544         888988777654 344444444332111110  011  111111 111234666654


Q ss_pred             h--ccccchHHHHHHHHHHHHHhcchhhHHHhHHHHHHhhCC-cchHH------------HHHHHHHHHHHHHHHHHHHh
Q psy6665         200 T--MATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGS-RMNVY------------LATVLVGVVRMVFGLLTSQL  264 (420)
Q Consensus       200 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~------------~~~~~~~~~~~~~~~~~g~l  264 (420)
                      .  .++.++ ..+......+.....++....|.|.++++.|+ ..+..            .......++.+++.++.+++
T Consensus       280 ~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l  358 (502)
T TIGR00887       280 HFFKWRHGK-HLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFL  358 (502)
T ss_pred             HHhhhHHHH-HHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1  111212 22222222222222345667778998887777 32211            12333445667788999999


Q ss_pred             hhccCchhhHhhhccc-----------h-h--HHHHHH-HHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHH
Q psy6665         265 LRTYGRRSLTMFSQIE-----------K-S--LIPVFC-ILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAH  329 (420)
Q Consensus       265 ~d~~g~~~~~~~~~~~-----------~-~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~  329 (420)
                      +||+|||++++.+..+           . .  ...... ..+...++..+..+..+.+..|++|++.|+++.|+.+...+
T Consensus       359 ~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~  438 (502)
T TIGR00887       359 VDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGK  438 (502)
T ss_pred             hhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhh
Confidence            9999999987766544           0 0  011111 11122223445567778889999999999999999999999


Q ss_pred             HHHHHHHHHhHHHHHhc----------CcchHHHHHHHHHHHHHHHHhhhccccCCCCChHHHH
Q psy6665         330 ILMFFALQYYPWFKDSV----------GGSAMVQWFFALISVISIVYVYIFLPETHGRTLLEIE  383 (420)
Q Consensus       330 ~~~~~~~~~~g~l~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (420)
                      ++++++|.+.+.+.+..          + ....+.+++++++++.+.. +++||+++++.||++
T Consensus       439 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~i~~-~~lpEt~~~~leei~  500 (502)
T TIGR00887       439 AGAIIGQFGFLYLAQHGDPTKGYPTGIW-MGHVLEIFALFMFLGILFT-LLIPETKGKSLEELS  500 (502)
T ss_pred             hHHHHHHHHhhhhhcccccccccccccc-chHHHHHHHHHHHHHHHHh-eEeccCCCCCHHhhh
Confidence            99999999999988843          3 3567788888887776654 677999998877654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG0254|consensus

Probab=100.00  E-value=3e-33  Score=267.10  Aligned_cols=367  Identities=25%  Similarity=0.423  Sum_probs=299.2

Q ss_pred             hHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHHHHHHhh
Q psy6665           7 VYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFYVAISVI   83 (420)
Q Consensus         7 ~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l~G~~~~   83 (420)
                      ...+..+...+|..+++++ |+++|++|||+.++++.+++.++.++++++  +++++++|            +++|+|.|
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR------------~l~G~g~G  157 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGR------------ILTGLGVG  157 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH------------HHhccchh
Confidence            3468889999999999999 999999999999999999999999999999  99999999            99999999


Q ss_pred             cccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh-----hhHHHHHhHhhhcccc---------cccee
Q psy6665          84 AMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL-----HWRTVAWLSLAYILIP---------SPVWL  149 (420)
Q Consensus        84 ~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~-----~wr~~f~~~~~~~~~~---------~~~~l  149 (420)
                       ......+.|++|+.|++.||...+..+....+|..++..++...     +||..+.+..+++++.         +|+|+
T Consensus       158 -~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L  236 (513)
T KOG0254|consen  158 -GASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWL  236 (513)
T ss_pred             -hhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHH
Confidence             66677999999999999999999999999999999998887777     6999888877776655         99999


Q ss_pred             eecCcHHHHHHHHHHHhcch-hhhhhhHHHHhhhccchh--hhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhH
Q psy6665         150 LNKGRANQALKSLKYLARNY-KEVKNKEQELKKMNSTKE--NQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYIT  226 (420)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (420)
                      ..+++.++++..+.++++.. .+.+...++...+...+.  .+.+..+.+++  .+..+++..+.+.+..++++++.+..
T Consensus       237 ~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~i~~~l~~fqq~tG~~~~  314 (513)
T KOG0254|consen  237 IEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELF--SPKVRKRLIIGLLLQLFQQLTGINYV  314 (513)
T ss_pred             HHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhc--CcchHHHHHHHHHHHHHHHHhCCceE
Confidence            99999999999999988832 222222112110111111  01111233443  35677888889999999999999999


Q ss_pred             HHhHHHHHHhhCCcchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc------------------------hh
Q psy6665         227 IFYAVQFLEDMGSRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE------------------------KS  282 (420)
Q Consensus       227 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~------------------------~~  282 (420)
                      .+|.+.+++..|...+........++..+++.+++.++.||+|||+.++.+...                        ..
T Consensus       315 ~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~  394 (513)
T KOG0254|consen  315 FYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAG  394 (513)
T ss_pred             EeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchh
Confidence            999999999988843336777778889999999999999999999998877666                        12


Q ss_pred             HHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHH
Q psy6665         283 LIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVI  362 (420)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  362 (420)
                      +..+...+++...+..+..++.|.+.+|.+|.+.|+.+.++.....++.+.+.......+.+..+ ....+..++.++.+
T Consensus       395 ~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~-~~~~f~~f~~~~~~  473 (513)
T KOG0254|consen  395 WLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALG-IGGTFGYFGGICLL  473 (513)
T ss_pred             HHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHH
Confidence            44566677778888889999999999999999999999999999999999887777777666644 35677777777777


Q ss_pred             HHH-HhhhccccCCCCChHHHHHHhccc
Q psy6665         363 SIV-YVYIFLPETHGRTLLEIEEYFETS  389 (420)
Q Consensus       363 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~  389 (420)
                      ... .+++++||+++++.+|+++.+++.
T Consensus       474 ~~~~fv~~~~pETkg~sleei~~~~~~~  501 (513)
T KOG0254|consen  474 SLIIFVFFFVPETKGLTLEEINELFEEG  501 (513)
T ss_pred             HHHHHheEEcccCCCCcHHHHHHHHHcC
Confidence            777 788899999999999988876554

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=8.8e-33  Score=262.93  Aligned_cols=335  Identities=15%  Similarity=0.176  Sum_probs=221.0

Q ss_pred             HHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HH--------HHHhhccccccchhHHHHHHHHH
Q psy6665          12 VLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQ--------LIMTGQIEKSLIPVFCILFYVAI   80 (420)
Q Consensus        12 ~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~--------~~~~~r~~~~~~~~~~~~~l~G~   80 (420)
                      +++++++..+|+++ |+++||+|||+++..+.+++++++++++++  ++        .+++.|            +++|+
T Consensus        63 ~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R------------~l~G~  130 (490)
T PRK10642         63 FSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCK------------MAQGF  130 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH------------HHHHh
Confidence            57788999999999 999999999999999999999999999998  54        388999            99999


Q ss_pred             HhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhh------------hhhhHHHHHhHhhhccccccce
Q psy6665          81 SVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGA------------VLHWRTVAWLSLAYILIPSPVW  148 (420)
Q Consensus        81 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~------------~~~wr~~f~~~~~~~~~~~~~~  148 (420)
                      +.| ...+...+++.|++|+++|+++.++...+..+|..+++.+..            ..|||+.|++.+++.++.....
T Consensus       131 g~g-~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~  209 (490)
T PRK10642        131 SVG-GEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLR  209 (490)
T ss_pred             HhH-hhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHH
Confidence            999 666679999999999999999999999888888877764432            2389999999876655431011


Q ss_pred             eeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHH
Q psy6665         149 LLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIF  228 (420)
Q Consensus       149 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (420)
                      ...+++++.. +..++..+   ...        +..  .++++.++++.++ +  .++......... +.....++....
T Consensus       210 ~~~~esp~~~-~~~~~~~~---~~~--------~~~--~~~~~~~~~~~~~-~--~~~~~~~~~~~~-~~~~~~~~~~~~  271 (490)
T PRK10642        210 HALEETPAFQ-QHVDKLEQ---GDR--------EGL--QDGPKVSFKEIAT-K--HWRSLLTCIGLV-IATNVTYYMLLT  271 (490)
T ss_pred             HcCCCChhHH-HHHHhhhh---hcc--------ccc--cccccCCHHHHHH-H--hHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            1112221110 00000000   000        000  0011223444443 1  222233222222 222334667788


Q ss_pred             hHHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-------------hhHHHHHHHH-HH
Q psy6665         229 YAVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-------------KSLIPVFCIL-FY  292 (420)
Q Consensus       229 ~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-------------~~~~~~~~~~-~~  292 (420)
                      |.|.++++. |+ ..+.........++.+++.++.|+++||+|||+.+..+...             ......+... +.
T Consensus       272 ~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (490)
T PRK10642        272 YMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLM  351 (490)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            999999764 77 45555666667788889999999999999999887665432             0111111111 11


Q ss_pred             HHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhccc
Q psy6665         293 VAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFLP  372 (420)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  372 (420)
                      .........+....+..|.+|++.|+++.|+.+....+++.++|.+.+++.+..+++..++++..+.+++..+.. ++.|
T Consensus       352 ~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~-~~~p  430 (490)
T PRK10642        352 LAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG-VTMK  430 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH-HHhc
Confidence            111111223344577789999999999999877778888899999999998876645555555555555555544 4568


Q ss_pred             cCCCCC
Q psy6665         373 ETHGRT  378 (420)
Q Consensus       373 ~~~~~~  378 (420)
                      |++++.
T Consensus       431 es~~~~  436 (490)
T PRK10642        431 ETANRP  436 (490)
T ss_pred             cccCCC
Confidence            876543

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=2.4e-32  Score=260.81  Aligned_cols=363  Identities=26%  Similarity=0.452  Sum_probs=257.0

Q ss_pred             CccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh-----HHHHHhhccccccchhHHHHH
Q psy6665           3 SRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY-----TQLIMTGQIEKSLIPVFCILF   76 (420)
Q Consensus         3 ~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~r~~~~~~~~~~~~~   76 (420)
                      .+..+.....+++.++..++.++ |+++||+|||++++.+.++.+++.+++.+.     ++.+++.|            +
T Consensus        68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r------------~  135 (481)
T TIGR00879        68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGR------------V  135 (481)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH------------H
Confidence            34677888999999999999999 999999999999999999999999988665     45889999            9


Q ss_pred             HHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHh---hh----hhhHHHHHhHhhhcccc-----
Q psy6665          77 YVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALG---AV----LHWRTVAWLSLAYILIP-----  144 (420)
Q Consensus        77 l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~---~~----~~wr~~f~~~~~~~~~~-----  144 (420)
                      ++|++.+ ...+....++.|++|+++|++++++.+.+..+|..+++.++   ..    .+||+.|++.++..++.     
T Consensus       136 l~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~  214 (481)
T TIGR00879       136 LLGIGVG-IASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLF  214 (481)
T ss_pred             HHHhhhh-HHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHh
Confidence            9999999 77777899999999999999999999999999999999998   33    38999998866555443     


Q ss_pred             ----ccceeeecCcHHHHHHHHHHHhcchhhhhhhHHHHh---hhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHH
Q psy6665         145 ----SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELK---KMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFAL  217 (420)
Q Consensus       145 ----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (420)
                          .|.+...+++.++.++...+..+.+.......+..+   .....+.+..+..+.+.++..+..+++.++...+..+
T Consensus       215 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (481)
T TIGR00879       215 FLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWF  294 (481)
T ss_pred             cCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHH
Confidence                111111112222222222221111110000000000   0000000001111233333111134455555555555


Q ss_pred             HHhcchhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc--------h-------
Q psy6665         218 QQLAGIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE--------K-------  281 (420)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~--------~-------  281 (420)
                      ..........++.|.+.++.|+ ..+.........++.+++.++.++++||++||+.+..+..+        .       
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (481)
T TIGR00879       295 QQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFV  374 (481)
T ss_pred             HHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            5555566677888988888788 66667778888899999999999999999999887766444        1       


Q ss_pred             -------hHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHH
Q psy6665         282 -------SLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQW  354 (420)
Q Consensus       282 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~  354 (420)
                             .........++..++..+..+....+..|.+|++.|+++.|+.+...+++++++|.+.+.+.++.| +...++
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~-~~~~f~  453 (481)
T TIGR00879       375 TGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIG-VGGVFI  453 (481)
T ss_pred             CCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccceeh
Confidence                   111222333344444555556667888999999999999999999999999999999999999888 888888


Q ss_pred             HHHHHHHHHHHHhhhccccCCCCCh
Q psy6665         355 FFALISVISIVYVYIFLPETHGRTL  379 (420)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~  379 (420)
                      +.++++++++++.+++.||+++++.
T Consensus       454 ~~~~~~~~~~i~~~~~~~~~~~~~~  478 (481)
T TIGR00879       454 FFGGLNVLGLIFVYFFLPETKGRTL  478 (481)
T ss_pred             hHHHHHHHHHHHHheecccCCCCCh
Confidence            8888888888887777788776554

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00898 2A0119 cation transport protein

Probab=100.00  E-value=3.5e-32  Score=260.88  Aligned_cols=350  Identities=20%  Similarity=0.250  Sum_probs=246.2

Q ss_pred             cchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHHHHHH
Q psy6665           5 MNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFYVAIS   81 (420)
Q Consensus         5 ~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l~G~~   81 (420)
                      ..+.....+++.+|.+++.++ |+++||+|||++++++.++.+++.++++++  ++.+++.|            ++.|++
T Consensus       126 ~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r------------~l~G~~  193 (505)
T TIGR00898       126 AWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFR------------LLVGMG  193 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHH------------HHHHhh
Confidence            456678889999999999999 999999999999999999999999999888  99999999            999999


Q ss_pred             hhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh-hhHHHHHhHhhhcccc---------ccceeee
Q psy6665          82 VIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL-HWRTVAWLSLAYILIP---------SPVWLLN  151 (420)
Q Consensus        82 ~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~-~wr~~f~~~~~~~~~~---------~~~~l~~  151 (420)
                      .+ ...+...+++.|++|+++|+++.++...+..+|.++++.++..+ +||+.+++.+++.++.         +|+|+..
T Consensus       194 ~~-~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~  272 (505)
T TIGR00898       194 IG-GIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLIS  272 (505)
T ss_pred             cc-chHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            99 76666999999999999999999999999999999999988776 8999999887766554         6677777


Q ss_pred             cCcHHHHHHHHHHHhcchhhhhhhH-HHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhH
Q psy6665         152 KGRANQALKSLKYLARNYKEVKNKE-QELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYA  230 (420)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (420)
                      +++.+++.+.+++..+.+......+ .+.+.++..++++++.+.++.++ ++..+...+.....+..      ....++.
T Consensus       273 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~------~~~~~~~  345 (505)
T TIGR00898       273 QGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFR-TPNLRKTTLCLMMLWFT------TAFSYYG  345 (505)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhC-ChHHHHHHHHHHHHHHH------HHHHHHH
Confidence            7777777666665544322111100 00000000001111234555554 44444333333222221      1122222


Q ss_pred             HHH-HHhhCCcchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc------------hh-HHHHHHHHHHHHHH
Q psy6665         231 VQF-LEDMGSRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE------------KS-LIPVFCILFYVAIS  296 (420)
Q Consensus       231 ~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~------------~~-~~~~~~~~~~~~~~  296 (420)
                      ..+ ..+.+.  +........++..+++.++.+++.||+|||+.+..+..+            .. ........+...+.
T Consensus       346 ~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  423 (505)
T TIGR00898       346 LVLDLGNLGG--NIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFG  423 (505)
T ss_pred             HhccccccCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence            222 222222  344555667788899999999999999999887776554            11 11122222222222


Q ss_pred             hhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhccccCCC
Q psy6665         297 VIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFLPETHG  376 (420)
Q Consensus       297 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (420)
                      ..+..+..+++..|.+|++.|+++.|+.+....+|++++|.+.+ + +..+ ...++.+++++.+++.+.. +++||+++
T Consensus       424 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~-~~~~~~~~~~~~~~~~~~~-~~lpet~~  499 (505)
T TIGR00898       424 ITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKW-LFLPLVLFGGLALLAGILT-LFLPETKG  499 (505)
T ss_pred             HHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHH-HhhHHHHHHHHHHHHHHHH-HcCcCCCC
Confidence            33345666789999999999999999999999999999999998 4 3344 5678888888777776665 57789887


Q ss_pred             CChH
Q psy6665         377 RTLL  380 (420)
Q Consensus       377 ~~~~  380 (420)
                      ++++
T Consensus       500 ~~l~  503 (505)
T TIGR00898       500 VPLP  503 (505)
T ss_pred             CCCC
Confidence            7654

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=100.00  E-value=2.7e-38  Score=299.02  Aligned_cols=361  Identities=27%  Similarity=0.459  Sum_probs=284.4

Q ss_pred             hHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh-----HHHHHhhccccccchhHHHHHHHHH
Q psy6665           7 VYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY-----TQLIMTGQIEKSLIPVFCILFYVAI   80 (420)
Q Consensus         7 ~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~r~~~~~~~~~~~~~l~G~   80 (420)
                      ......+...+|..+|+++ |+++||+|||+.++++.++..+++++.+++     ++.+.++|            ++.|+
T Consensus        47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R------------~~~G~  114 (451)
T PF00083_consen   47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGR------------FLIGF  114 (451)
T ss_pred             HHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccc------------ccccc
Confidence            4567788999999999999 999999999999999999999999998887     68899999            99999


Q ss_pred             HhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----h---hHHHHHhHhhhcccc---------
Q psy6665          81 SVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----H---WRTVAWLSLAYILIP---------  144 (420)
Q Consensus        81 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~---wr~~f~~~~~~~~~~---------  144 (420)
                      +.| ...+....++.|..|+++|++..++.+.+..+|.+++..++...    +   ||..+++..+++++.         
T Consensus       115 ~~g-~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pE  193 (451)
T PF00083_consen  115 GIG-GAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPE  193 (451)
T ss_pred             ccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999 76777999999999999999999999999999999888776544    4   999999888887544         


Q ss_pred             ccceeeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchh
Q psy6665         145 SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIY  224 (420)
Q Consensus       145 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (420)
                      +|+|+..+++.+|+++.+++.++.+...++..++.  ++.++.++.+..++++++ ++..+++....+.+..+.+..+.+
T Consensus       194 SP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~l~~~~~~~g~~  270 (451)
T PF00083_consen  194 SPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIK--AEKKESQESKASWRDLFR-NKKYRKRLLIALLLQFFQQFSGIN  270 (451)
T ss_pred             ccceecccccccccccccccccccccccccccccc--cccccccccceeeeeccc-cccccccccccccccccccccccc
Confidence            99999999999999888877655432222211111  112222222244556655 444566667777777777677777


Q ss_pred             hHHHhHHHHHHhhCCcchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------------h----hH
Q psy6665         225 ITIFYAVQFLEDMGSRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------------K----SL  283 (420)
Q Consensus       225 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------------~----~~  283 (420)
                      ...+|.+.++++.+...+ ........+...++.+++.++.||+|||+.++.+...                 .    ..
T Consensus       271 ~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (451)
T PF00083_consen  271 FIFYYSPSIFENAGISNS-FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSI  349 (451)
T ss_pred             cccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            788888888877776333 4445566677888888888999999999887766655                 1    11


Q ss_pred             HHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHH
Q psy6665         284 IPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVIS  363 (420)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  363 (420)
                      ..+.........+..++.+..+.+..|++|++.|+++.|+....+++++++.|.+.+.+.+..+ ....+.++++++++.
T Consensus       350 ~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~-~~~~~~i~~~~~~i~  428 (451)
T PF00083_consen  350 LSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG-GWGVFLIFAGVCLIA  428 (451)
T ss_pred             ccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccchhhHHHHHHH
Confidence            2222333344455667788888999999999999999999999999999999999999888877 678888888888899


Q ss_pred             HHHhhhccccCCCCChHHHHHH
Q psy6665         364 IVYVYIFLPETHGRTLLEIEEY  385 (420)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~  385 (420)
                      .++.++++|||++++.+|+++.
T Consensus       429 ~i~~~~~lpET~g~~l~ei~~~  450 (451)
T PF00083_consen  429 IIFVYFFLPETKGKTLEEIQEM  450 (451)
T ss_pred             HhheeEEEeeCCCCCHHHHHhh
Confidence            8888999999999999998875

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.3e-32  Score=238.17  Aligned_cols=345  Identities=16%  Similarity=0.101  Sum_probs=261.6

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHHH
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFYV   78 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l~   78 (420)
                      +.|.++.....+.+.+.+.++-.. |.++||.+.|+.+.+++++.++.+++++++  .+.+.+..            ++.
T Consensus        60 ~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~------------~ln  127 (448)
T COG2271          60 GLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLW------------VLN  127 (448)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHH------------HHH
Confidence            467888899999999999999999 999999999999999999999999999998  77778888            999


Q ss_pred             HHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHh--hhh----hhHHHHHhHhhhcccc-ccceeee
Q psy6665          79 AISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALG--AVL----HWRTVAWLSLAYILIP-SPVWLLN  151 (420)
Q Consensus        79 G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~--~~~----~wr~~f~~~~~~~~~~-~~~~l~~  151 (420)
                      |..+| +..+++...++.|+|++|||+..++++.+.++|..+.|.+.  ..+    +||..|++.++++++. ...++..
T Consensus       128 g~fQg-~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~  206 (448)
T COG2271         128 GWFQG-MGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLL  206 (448)
T ss_pred             HHHhc-CCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHh
Confidence            99999 88888999999999999999999999999999998888877  544    8999999999998877 3334444


Q ss_pred             cCcHHHH-HHHHHHHhcchhhhhhhHHHHhhhccchhhhhh-hhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHh
Q psy6665         152 KGRANQA-LKSLKYLARNYKEVKNKEQELKKMNSTKENQSL-SARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFY  229 (420)
Q Consensus       152 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (420)
                      |+++++. .+...+.++++.+.         .  +++++.+ .+.++++. +-.++++.++...+...+....=+.+..|
T Consensus       207 rd~Pqs~GLP~ie~~~~d~~e~---------~--~~~~~~~~ls~~~i~~-~YVL~Nk~iW~la~a~vfvYivR~gi~dW  274 (448)
T COG2271         207 RDRPQSEGLPPIEEYRGDPLEI---------Y--EEEKENEGLTAWQIFV-KYVLKNKLIWLLALANVFVYVVRYGINDW  274 (448)
T ss_pred             CCCccccCCCCHHHhhcCchhh---------h--hhhccCCCccHHHHHH-HHHHcChHHHHHHHHHHHHHHHHHHHhhh
Confidence            4444331 11111111111110         0  1111111 23344443 33445556666666555555567889999


Q ss_pred             HHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhcc--CchhhHhhhccc--------------hhHHHHHHHHH
Q psy6665         230 AVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTY--GRRSLTMFSQIE--------------KSLIPVFCILF  291 (420)
Q Consensus       230 ~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~--------------~~~~~~~~~~~  291 (420)
                      .|.|+.+. |+ ..++....+.+-.++++|++++|+++||+  |||....+.+.+              .++......++
T Consensus       275 ~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~  354 (448)
T COG2271         275 GPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLF  354 (448)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHH
Confidence            99999887 88 88889999999999999999999999997  566544333222              22334444444


Q ss_pred             HHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHH-HHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhc
Q psy6665         292 YVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHI-LMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIF  370 (420)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  370 (420)
                      ..+++..|..-+.-....|..|++..|++.|+...+.++ |...+....|++.|.+| |...|.++.+.++++.++....
T Consensus       355 ~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~g-W~g~Fi~~~~~a~l~~lll~~~  433 (448)
T COG2271         355 IIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWG-WDGGFIVLSIAALLAILLLLPV  433 (448)
T ss_pred             HHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCC-CcchHHHHHHHHHHHHHHHHHH
Confidence            555555565545557888999999999999999999999 88899999999999988 8888888888777777765544


Q ss_pred             cc
Q psy6665         371 LP  372 (420)
Q Consensus       371 ~~  372 (420)
                      ..
T Consensus       434 ~~  435 (448)
T COG2271         434 WN  435 (448)
T ss_pred             Hh
Confidence            43

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=7.6e-31  Score=244.11  Aligned_cols=336  Identities=13%  Similarity=0.102  Sum_probs=229.6

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFY   77 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l   77 (420)
                      +|.+.++..+..+++.+++.+++++ |+++||+|||+++..+.+++++++++++++  ++.+++.|            ++
T Consensus        38 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r------------~l  105 (412)
T TIGR02332        38 LGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLR------------IL  105 (412)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH------------HH
Confidence            4677888999999999999999999 999999999999999999999999999988  88999999            99


Q ss_pred             HHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----------hhHHHHHhHhhhcccc-cc
Q psy6665          78 VAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----------HWRTVAWLSLAYILIP-SP  146 (420)
Q Consensus        78 ~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----------~wr~~f~~~~~~~~~~-~~  146 (420)
                      +|++.+ ...+....++.|++|+++|++++++++.+.++|..+++.++..+          |||+.|++.+++.++. ..
T Consensus       106 ~G~~~~-~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~  184 (412)
T TIGR02332       106 VGIAEA-GFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVM  184 (412)
T ss_pred             HHHHHh-hHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHH
Confidence            999999 77776788999999999999999999999999999998887542          8999999987776554 22


Q ss_pred             ceeeecCcHHH-------HHHHHHHH-hcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHH
Q psy6665         147 VWLLNKGRANQ-------ALKSLKYL-ARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQ  218 (420)
Q Consensus       147 ~~l~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (420)
                      .++..++++++       .++...+. +.+..+.++       .+ .+..+++...+..++   ..+.+.++......+.
T Consensus       185 ~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  253 (412)
T TIGR02332       185 TWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQ-------PE-GAFAHAAMPQRSMLR---EIFTPAIMLYTLAYFC  253 (412)
T ss_pred             HhhccCCCcccCCCCCHHHHHHHHHHHHhccccccc-------cc-cccccccccHHHHHH---HhcChHHHHHHHHHHH
Confidence            33333433321       11100000 000000000       00 000000111111111   0112223333344444


Q ss_pred             HhcchhhHHHhHHHHHHhh--CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhH-hhhccc----------hhHH
Q psy6665         219 QLAGIYITIFYAVQFLEDM--GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLT-MFSQIE----------KSLI  284 (420)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~--g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~-~~~~~~----------~~~~  284 (420)
                      .....+.+..|.|.++++.  ++ ..+.+.......++.+++.++.|+++||+++|+.. ......          ....
T Consensus       254 ~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~  333 (412)
T TIGR02332       254 LTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHN  333 (412)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            4445677889999999874  55 56667778888999999999999999999876642 222111          1111


Q ss_pred             HHHHHHHHHHHH-hhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHH
Q psy6665         285 PVFCILFYVAIS-VIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALIS  360 (420)
Q Consensus       285 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  360 (420)
                      ......+....+ .....+..+....|.+|++.|+++.|+.+...++|++++|.+.|.+.|..|++...+.+.+++.
T Consensus       334 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~  410 (412)
T TIGR02332       334 LIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL  410 (412)
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence            111111111111 1112233445567889999999999999999999999999999999999876777776665543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=1.1e-30  Score=245.01  Aligned_cols=349  Identities=10%  Similarity=-0.005  Sum_probs=235.3

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFY   77 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l   77 (420)
                      +|.+.++.....+.+.++..++.++ |+++||+|||+++.++.++.+++.++++++  ++.+++.|            ++
T Consensus        53 ~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------~l  120 (434)
T PRK11663         53 LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLW------------VL  120 (434)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHH------------HH
Confidence            3567778888899999999999999 999999999999999999999999998888  88888999            99


Q ss_pred             HHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccc-ccceeeec
Q psy6665          78 VAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIP-SPVWLLNK  152 (420)
Q Consensus        78 ~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~-~~~~l~~~  152 (420)
                      .|++.| ...+...+++.|++|+++|++++++.+.+.++|..+++.+.+.+    +||+.|++.+++.++. ...++..+
T Consensus       121 ~g~~~g-~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~  199 (434)
T PRK11663        121 NAFFQG-WGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLR  199 (434)
T ss_pred             HHHHHH-ccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999 77777899999999999999999999999999999998877765    8999999887765543 11222223


Q ss_pred             CcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhHHH
Q psy6665         153 GRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQ  232 (420)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (420)
                      +++++..     ....++..++   ..  +..++.++++.+.++.++ ....+++.++......+........+..|.|.
T Consensus       200 ~~p~~~~-----~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  268 (434)
T PRK11663        200 DKPQAMG-----LPSVGEWRHD---AL--ELAQQQEGAGLSRKEILT-KYVLLNPYIWLLSFSYVLVYVVRAAINDWGNL  268 (434)
T ss_pred             CCHhhcC-----CCCccccccc---cc--ccchhccccCCChhhhHH-HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3221110     0000000000   00  000000001112222221 11112223333333333333334567778999


Q ss_pred             HHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhcc--CchhhH-h---hhccc----------hhHHHHHHHHHHHH
Q psy6665         233 FLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTY--GRRSLT-M---FSQIE----------KSLIPVFCILFYVA  294 (420)
Q Consensus       233 ~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~-~---~~~~~----------~~~~~~~~~~~~~~  294 (420)
                      |+++. |+ ..+.+.......++.+++.++.|+++||+  ++|+.. .   .+...          .+........+..+
T Consensus       269 ~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  348 (434)
T PRK11663        269 YMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIG  348 (434)
T ss_pred             HHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHH
Confidence            98654 77 67777888888999999999999999998  332221 1   11111          11111111111112


Q ss_pred             HHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhccccC
Q psy6665         295 ISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFLPET  374 (420)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (420)
                      .+..+..........|.+|++.|+++.|+.+...++|++++|.+.|++.|+.| +...+...+++.++..+..+...+++
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~~  427 (434)
T PRK11663        349 FFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWH-WTGFFVVISIAAGISALLLLPFLNAQ  427 (434)
T ss_pred             HHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            22222222334567899999999999999999999999999999999999999 88899888888888777665444443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.98  E-value=3.5e-31  Score=250.76  Aligned_cols=343  Identities=13%  Similarity=-0.020  Sum_probs=230.5

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHH-----h--HHHHHhhccccccchhH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGY-----Y--TQLIMTGQIEKSLIPVF   72 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~--~~~~~~~r~~~~~~~~~   72 (420)
                      +|.+.++.....+.+.+++.+++++ |+++||+|||+++..+.++++++.+..++     +  ++.+++.|         
T Consensus        59 ~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r---------  129 (467)
T PRK09556         59 YGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALW---------  129 (467)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH---------
Confidence            4667788899999999999999999 99999999999999999888888777665     2  88899999         


Q ss_pred             HHHHHHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh-------hhHHHHHhHhhhcccc-
Q psy6665          73 CILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL-------HWRTVAWLSLAYILIP-  144 (420)
Q Consensus        73 ~~~~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~-------~wr~~f~~~~~~~~~~-  144 (420)
                         +++|++.+ ...+...+++.||+|+++|++++++...+.++|..+++.+....       +||..|.+.+++.++. 
T Consensus       130 ---~l~G~~~~-~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~  205 (467)
T PRK09556        130 ---ALSGFFQS-TGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIG  205 (467)
T ss_pred             ---HHHHHHHh-ccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHH
Confidence               99999999 77777899999999999999999999999999999988776532       4888888777666554 


Q ss_pred             ccceeeecCcHHHHHH-HHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcch
Q psy6665         145 SPVWLLNKGRANQALK-SLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGI  223 (420)
Q Consensus       145 ~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (420)
                      .+.++..++++++... ..++..+ +...+        ++ ++.++++.+..+.+. +...+.+.++...+..+......
T Consensus       206 i~~~~~~~~~p~~~~~~~~~~~~~-~~~~~--------~~-~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~  274 (467)
T PRK09556        206 FIGLRYGSDSPEELGWGKAEEIFG-EPISE--------ED-KETESTDMTKWQIFV-EYVLKNPVIWLLCFANIFLYIVR  274 (467)
T ss_pred             HHHHHhCCCChhhcCCCChhhccc-Cccch--------hh-hccccccCcHHHHHH-HHHHcChHHHHHHHHHHHHHHHH
Confidence            2223333333222100 0000000 00000        00 000000111111111 11122333343433333333345


Q ss_pred             hhHHHhHHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-------------hhHHHHHH
Q psy6665         224 YITIFYAVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-------------KSLIPVFC  288 (420)
Q Consensus       224 ~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-------------~~~~~~~~  288 (420)
                      .....|.|.|+++. |+ ..+++.......++.+++.++.|+++||++||+.+......             .+......
T Consensus       275 ~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (467)
T PRK09556        275 IGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLA  354 (467)
T ss_pred             HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            56788999999764 88 66777888888899999999999999999988765433221             11111111


Q ss_pred             HHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHH-HHHHHHHHhHHHHH------------hcCcchHHHHH
Q psy6665         289 ILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHI-LMFFALQYYPWFKD------------SVGGSAMVQWF  355 (420)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-~~~~~~~~~g~l~~------------~~g~~~~~~~~  355 (420)
                      ..+..+....+..........|.+|++.+|++.|+.+...++ +.+++|.+.|++.|            ..| |...|.+
T Consensus       355 ~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~-~~~~f~~  433 (467)
T PRK09556        355 SLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTG-WAGTFAA  433 (467)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccC-hHHHHHH
Confidence            111222122222222235667999999999999999999997 66999999999999            556 8888888


Q ss_pred             HHHHHHHHHHHhh
Q psy6665         356 FALISVISIVYVY  368 (420)
Q Consensus       356 ~~~~~~~~~~~~~  368 (420)
                      ..++.+++.+...
T Consensus       434 ~~~~~~~~~~~~~  446 (467)
T PRK09556        434 LDIAAIGCICLMA  446 (467)
T ss_pred             HHHHHHHHHHHHH
Confidence            8777777665554

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.98  E-value=4.5e-30  Score=237.73  Aligned_cols=329  Identities=15%  Similarity=0.106  Sum_probs=236.9

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFY   77 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l   77 (420)
                      +|.|.++..+..+.+.+++.+++++ |+++||+|||+++..+..+++++.+.++++  ++.+++.|            ++
T Consensus        39 ~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r------------~l  106 (393)
T PRK09705         39 SGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSA------------LL  106 (393)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHH------------HH
Confidence            4778888999999999999999999 999999999999999999999999999998  88999999            99


Q ss_pred             HHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh-----hhHHHHHhHhhhccccccceeeec
Q psy6665          78 VAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL-----HWRTVAWLSLAYILIPSPVWLLNK  152 (420)
Q Consensus        78 ~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~-----~wr~~f~~~~~~~~~~~~~~l~~~  152 (420)
                      +|++.+ ...+....++.|++| ++|+++++++..+..+|..+++.+++.+     +||..+.+.++..++....++...
T Consensus       107 ~Gig~~-~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  184 (393)
T PRK09705        107 GGVGIG-IIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQS  184 (393)
T ss_pred             HHhHHH-HHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999 777778899999997 7899999999988888887777776654     799987665554433211111111


Q ss_pred             CcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhHHH
Q psy6665         153 GRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQ  232 (420)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (420)
                      ++.++              .++       ++       +.+..+.+      +++..+...+..+...........|.|.
T Consensus       185 ~~~~~--------------~~~-------~~-------~~~~~~~l------~~~~~~~l~~~~~~~~~~~~~~~~~lp~  230 (393)
T PRK09705        185 AREVA--------------SSH-------KT-------TTTPVRVV------FTPRAWTLGVYFGLINGGYASLIAWLPA  230 (393)
T ss_pred             cCCCc--------------ccc-------CC-------CcCCcccc------cCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            10000              000       00       00001111      1111122222222223345677889999


Q ss_pred             HHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHHHHHHHhhch
Q psy6665         233 FLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILFYVAISVIGM  300 (420)
Q Consensus       233 ~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~  300 (420)
                      ++++.|+ ..+.+.......++.++++++.+++.||++||+....+..+           .......... ..+......
T Consensus       231 ~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-l~g~g~g~~  309 (393)
T PRK09705        231 FYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLWAM-VCGLGLGGA  309 (393)
T ss_pred             HHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHHHH-HHHHhccch
Confidence            9988788 77788888899999999999999999999999887666544           1111111111 111112223


Q ss_pred             hhHHHHHhcccC-ChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhccccCCCCC
Q psy6665         301 LSIPWTMTAEIF-PLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFLPETHGRT  378 (420)
Q Consensus       301 ~~~~~~~~~~~~-p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (420)
                      .+.......+.. |++.+++..|+.+...++++.++|.+.|++.|+.|++...+.+.++.+++..++...+.||++++.
T Consensus       310 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (393)
T PRK09705        310 FPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQL  388 (393)
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence            454555555666 467899999999999999999999999999999987777888878777777777777888877654

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.98  E-value=6.1e-30  Score=238.74  Aligned_cols=329  Identities=13%  Similarity=0.141  Sum_probs=231.3

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFY   77 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l   77 (420)
                      +|.+.++.....+.+.++..++.++ |+++||+|||+++..+.++..++.+++.+.  ++.+++.|            ++
T Consensus        45 ~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~l  112 (406)
T PRK11551         45 FGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVAR------------LL  112 (406)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHH------------HH
Confidence            3567778889999999999999999 999999999999999999999998888877  88899999            99


Q ss_pred             HHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccccc-ceeeec
Q psy6665          78 VAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIPSP-VWLLNK  152 (420)
Q Consensus        78 ~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~~~-~~l~~~  152 (420)
                      .|++.+ ...+...+++.|++|+++|++++++.+.+..+|..+++.++..+    +||+.|++.+++.++..+ .+...+
T Consensus       113 ~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  191 (406)
T PRK11551        113 TGVGLG-GALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLP  191 (406)
T ss_pred             HHhhHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999 77777899999999999999999999999999999999887654    799999887765444311 111112


Q ss_pred             CcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhHHH
Q psy6665         153 GRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQ  232 (420)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (420)
                      +++++.++       +.                ++++++......++ .+..++  ........+......+....|.|.
T Consensus       192 ~~~~~~~~-------~~----------------~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~  245 (406)
T PRK11551        192 ESRAFAQA-------AG----------------AGKQRAPVLRALFG-EGRATA--TLLLWISYFFTLIVLYFLLNWLPS  245 (406)
T ss_pred             CChhHHhc-------cC----------------cchhhhhhHHHHhh-hhhhhH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22111000       00                00000001111111 111111  111111122222234556778899


Q ss_pred             HHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHHHHHHHhhch
Q psy6665         233 FLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILFYVAISVIGM  300 (420)
Q Consensus       233 ~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~  300 (420)
                      ++++.|+ ..+.+.......++.+++.++.|++.||++||+.+..+...           .+........+..+....+.
T Consensus       246 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  325 (406)
T PRK11551        246 LLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGG  325 (406)
T ss_pred             HHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhH
Confidence            9988888 77788888888999999999999999999999887654433           11222222222233333344


Q ss_pred             hhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhh
Q psy6665         301 LSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVY  368 (420)
Q Consensus       301 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  368 (420)
                      .+...++..|.+|++.|+++.|+.+....++..++|.+.|.+.++.+++...+.......+++.+..+
T Consensus       326 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (406)
T PRK11551        326 QSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL  393 (406)
T ss_pred             HHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence            56667889999999999999999999999999999999999999876344555555555555554443

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.98  E-value=1.3e-29  Score=237.96  Aligned_cols=320  Identities=15%  Similarity=0.117  Sum_probs=220.4

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFY   77 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l   77 (420)
                      +|.+..+.....+.+.++..+++++ |+++||+|||+++..+.++.+++.++++++  ++.+++.|            ++
T Consensus        48 ~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r------------~l  115 (426)
T PRK12307         48 LGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSR------------FI  115 (426)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH------------HH
Confidence            3566777888889999999999999 999999999999999999999999998888  88999999            99


Q ss_pred             HHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhccccccceeeecC
Q psy6665          78 VAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIPSPVWLLNKG  153 (420)
Q Consensus        78 ~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~~~~~l~~~~  153 (420)
                      +|++.+ ...+....++.|++|+++|+++.++...+..+|.++++.+...+    +||+.|++..+..++.  .++. ..
T Consensus       116 ~G~g~g-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~~--~~~~-~~  191 (426)
T PRK12307        116 VGMGMA-GEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLV--IYIR-AR  191 (426)
T ss_pred             HHHHHh-hHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH--HHHH-HH
Confidence            999999 66666899999999999999999999999999999998877654    8999998865544332  1111 10


Q ss_pred             cHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhHHHH
Q psy6665         154 RANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQF  233 (420)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (420)
                      .+++.+...++..+ +  .+        +.....+..+.+.++.++ ++..+. ...... ..+......+.+..+.|.+
T Consensus       192 ~p~~~~~~~~~~~~-~--~~--------~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~  257 (426)
T PRK12307        192 APESKEWEEAKLSG-K--GK--------HSQSAWSVFSLSMKGLFN-RAQFPL-TLCVFI-VLFSIFGANWPIFGLLPTY  257 (426)
T ss_pred             CCCChHHHHhhhhc-c--cc--------ccccchhhhhHHHHHHHh-hchHHH-HHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            00000000000000 0  00        000000001123344443 222221 111111 1222222234466788988


Q ss_pred             HHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------h-hHHHHHHHHHHHH-HHhhc
Q psy6665         234 LEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------K-SLIPVFCILFYVA-ISVIG  299 (420)
Q Consensus       234 ~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~-~~~~~~~~~~~~~-~~~~~  299 (420)
                      +++.|. +...+.......++.+++.++.+++.||++||+.+..+..+           . ..........+.. ....+
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (426)
T PRK12307        258 LAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVG  337 (426)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhccc
Confidence            888777 66677777888899999999999999999999887766544           0 1111111111111 11223


Q ss_pred             hhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchH
Q psy6665         300 MLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAM  351 (420)
Q Consensus       300 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~  351 (420)
                      ..+....++.|.+|++.|+++.|+.+....+++.++|.+.|++.+..| +..
T Consensus       338 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g-~~~  388 (426)
T PRK12307        338 VGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMG-LGA  388 (426)
T ss_pred             HhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHccc-HHH
Confidence            344555778899999999999999999999999999999999999988 543

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.97  E-value=5.4e-30  Score=238.41  Aligned_cols=345  Identities=13%  Similarity=0.038  Sum_probs=238.9

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFY   77 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l   77 (420)
                      +|.+..+.....+++.++..++.++ |+++||+|||+++..+.++.+++.++++++  ++.+++.|            ++
T Consensus        24 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~l   91 (399)
T TIGR00893        24 LGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILR------------VL   91 (399)
T ss_pred             hCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHH------------HH
Confidence            3567788889999999999999999 999999999999999999999999999888  89999999            99


Q ss_pred             HHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccc-ccceeeec
Q psy6665          78 VAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIP-SPVWLLNK  152 (420)
Q Consensus        78 ~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~-~~~~l~~~  152 (420)
                      .|++.+ ...+....++.|++|+++|++++++.+...++|..+++.+++.+    +||+.|++.+++.++. ...++..+
T Consensus        92 ~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (399)
T TIGR00893        92 LGAAEA-PFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIP  170 (399)
T ss_pred             HHHHHH-hhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheec
Confidence            999999 77777999999999999999999999999999999999888765    8999999887766554 11222222


Q ss_pred             CcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhHHH
Q psy6665         153 GRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQ  232 (420)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (420)
                      +++++.+...++.++...+..    ..+.++.+++++.+...++.++      ++.++......+...........+.|.
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (399)
T TIGR00893       171 DPPQKAKWLTEEEKYIVVGGL----LAEQQGKGPSTPKKYQIKELLK------DRRVWGLALGQFLVNIGLGFFLTWFPT  240 (399)
T ss_pred             CCCCccccCCHHHHhhcchhh----ccccccccccCCCccchHHHhc------CHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            222111000000000000000    0000000011111122233332      222333333333333446667788898


Q ss_pred             HHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchh--------hHhhhccc--------h--hHHHHHHHHHH
Q psy6665         233 FLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRS--------LTMFSQIE--------K--SLIPVFCILFY  292 (420)
Q Consensus       233 ~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~--------~~~~~~~~--------~--~~~~~~~~~~~  292 (420)
                      ++++. |. ..+.+.......++.+++.++.+++.||++||+        ....+...        .  ...........
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (399)
T TIGR00893       241 YLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVA  320 (399)
T ss_pred             HHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence            88765 77 667777888888999999999999999999985        11111111        1  11112222222


Q ss_pred             HHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhh
Q psy6665         293 VAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVY  368 (420)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  368 (420)
                      ..++..+..+..+++..|.+|++.|+++.|+.+....++..++|.+.|.+.+..|++...+.+.+++.+++.+..+
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       321 LGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             HHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence            2333334567778999999999999999999999999999999999999999887566777777776666655543

>PRK03545 putative arabinose transporter; Provisional

Probab=99.97  E-value=4.2e-29  Score=231.52  Aligned_cols=321  Identities=15%  Similarity=0.090  Sum_probs=231.0

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFY   77 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l   77 (420)
                      +|.+.++..+..+.+.++..+++++ |+++||+|||+++..+.++.+++++.++++  ++.+++.|            ++
T Consensus        39 ~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r------------~~  106 (390)
T PRK03545         39 FHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISR------------IG  106 (390)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH------------HH
Confidence            4677888889999999999999999 999999999999999999999999999988  99999999            99


Q ss_pred             HHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhccccc-cceeeec
Q psy6665          78 VAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIPS-PVWLLNK  152 (420)
Q Consensus        78 ~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~~-~~~l~~~  152 (420)
                      +|++.+ ...+...+++.|++|+++|++++++...+.++|..++|.++..+    |||+.|++.++++++.. ..+...+
T Consensus       107 ~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~  185 (390)
T PRK03545        107 IAFAHA-IFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLP  185 (390)
T ss_pred             HHHHHH-HHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999998 77777889999999999999999999999999999998887665    89999999888766541 1111111


Q ss_pred             CcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhHHH
Q psy6665         153 GRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQ  232 (420)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (420)
                      +++++                             +++..++.++.++ ++..+. ......+   .. ...+....+.+.
T Consensus       186 ~~~~~-----------------------------~~~~~~~~~~~~~-~~~~~~-~~~~~~~---~~-~~~~~~~~~~~~  230 (390)
T PRK03545        186 LLPSE-----------------------------HSGSLKSLPLLFR-RPALVS-LYLLTVV---VV-TAHFTAYSYIEP  230 (390)
T ss_pred             CCCCC-----------------------------CcchHHHHHHHHh-CcHHHH-HHHHHHH---HH-HHHHHHHHHHHH
Confidence            10000                             0000111223332 222221 1111111   11 123334556777


Q ss_pred             HHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHHHHHHHhhc
Q psy6665         233 FLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILFYVAISVIG  299 (420)
Q Consensus       233 ~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~  299 (420)
                      ++++. |. ..+.+.......++.++++++.+++.||+++|.........           .+...........+.....
T Consensus       231 ~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~  310 (390)
T PRK03545        231 FVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMC  310 (390)
T ss_pred             HHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhc
Confidence            77664 77 66777788888899999999999999999988654433322           1111111222222222223


Q ss_pred             hhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhcc
Q psy6665         300 MLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFL  371 (420)
Q Consensus       300 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  371 (420)
                      ..+.......|..| +.|++++|+.+...++|..++|.+.|.+.|+.| +...+...+.+.+++.+......
T Consensus       311 ~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        311 IGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLG-LSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             chHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhHHHHHHHHHHHHHHHHHHHHc
Confidence            34444567777766 578999999999999999999999999999999 88889888888888877765554

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.97  E-value=8.2e-29  Score=219.18  Aligned_cols=318  Identities=15%  Similarity=0.154  Sum_probs=239.0

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFY   77 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l   77 (420)
                      ++.|.....+.++.|.++..+++++ ..+.||+.||++++..+.++.+++++++++  |+.++++|            ++
T Consensus        43 l~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR------------~~  110 (394)
T COG2814          43 LGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLAR------------AL  110 (394)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH------------HH
Confidence            5778889999999999999999999 999999999999999999999999999999  99999999            99


Q ss_pred             HHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccc-ccceeeec
Q psy6665          78 VAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIP-SPVWLLNK  152 (420)
Q Consensus        78 ~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~-~~~~l~~~  152 (420)
                      .|+..| .+.+...++..+..||++|++++++...+.+++..+|..++.++    |||..|+..+.++++. ...|...+
T Consensus       111 ~g~a~G-~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         111 AGLAHG-VFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHH-HHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999 77777999999999999999999999999988777666555554    9999999999988876 11111111


Q ss_pred             -CcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhHH
Q psy6665         153 -GRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAV  231 (420)
Q Consensus       153 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (420)
                       ++.                               +++.+.+.++.++   ..+++.++......+....+.+..++|..
T Consensus       190 ~~~~-------------------------------~~~~~~~~~~~~~---~l~~p~v~~~l~~t~l~~~g~F~~ftYi~  235 (394)
T COG2814         190 PSEI-------------------------------SGSLPGPLRTLLR---LLRRPGVLLGLLATFLFMTGHFALYTYIR  235 (394)
T ss_pred             CccC-------------------------------CCCCCcchhHHHH---HhcCchHHHHHHHHHHHHcchhhhHHhHH
Confidence             000                               0000111112221   22333444444445555556788888888


Q ss_pred             HHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHHHHHHHhh
Q psy6665         232 QFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILFYVAISVI  298 (420)
Q Consensus       232 ~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~  298 (420)
                      .++++. |+ .....+....++++.++|+.++|++.|| +.|+.+.....+           .+...........  ++.
T Consensus       236 P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~--wg~  312 (394)
T COG2814         236 PFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFL--WGF  312 (394)
T ss_pred             HHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH--HHH
Confidence            888887 88 7888999999999999999999999999 777766655443           2222222222222  233


Q ss_pred             chhhHHH---HHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhc
Q psy6665         299 GMLSIPW---TMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIF  370 (420)
Q Consensus       299 ~~~~~~~---~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  370 (420)
                      ...+...   ....+. -++.+..+.+++....++|..+|..+.|.+.|+.| +....++.+.+.+++..+....
T Consensus       313 a~~~~~~~~~~~~a~~-~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g-~~~~~~~~a~l~~~a~~~~~~~  385 (394)
T COG2814         313 AFSPALQGLQTRLARL-APDAADLAGSLNVAAFNLGIALGAALGGLVLDALG-YAATGWVGAALLLLALLLALLS  385 (394)
T ss_pred             HhhhhhhHHHHHhccc-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333   444443 35778999999999999999999999999999988 8888888888887777766433

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.97  E-value=2e-29  Score=229.86  Aligned_cols=319  Identities=12%  Similarity=-0.017  Sum_probs=212.8

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFY   77 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l   77 (420)
                      +|.+.++.....+.+.+++.+++++ |+++||+|||+++..+......+.+.....  ++.+++.|            ++
T Consensus        21 ~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R------------~l   88 (368)
T TIGR00903        21 IDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQ------------LL   88 (368)
T ss_pred             hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHH------------HH
Confidence            4677888889999999999999999 999999999998776655554544333332  88999999            99


Q ss_pred             HHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccccc-ceeeec
Q psy6665          78 VAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIPSP-VWLLNK  152 (420)
Q Consensus        78 ~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~~~-~~l~~~  152 (420)
                      +|++.+ ...+ ....++|++|+++|++++++.+.+..+|..+++.++..+    |||+.|++.++++++... .++..+
T Consensus        89 ~G~g~~-~~~~-~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp  166 (368)
T TIGR00903        89 AALGQP-FLLN-AFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALP  166 (368)
T ss_pred             HHhHhH-HHHH-HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999 6554 666779999999999999999999999999999888877    999999997777655411 122222


Q ss_pred             CcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhHHH
Q psy6665         153 GRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQ  232 (420)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (420)
                      +++++..                      +.. +.++..+++++.++ +     +.++......+......+.+..|.|.
T Consensus       167 ~~p~~~~----------------------~~~-~~~~~~~~~~~ll~-~-----~~~~~~~~~~~~~~~~~~~~~~wlp~  217 (368)
T TIGR00903       167 ALPFQAA----------------------EGF-GFKDAVKEFGALAG-R-----KDLWIIGAILGFGVALFDNLAIWLEA  217 (368)
T ss_pred             CCCCCCC----------------------CCc-chHHHHHHHHHHHc-C-----hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2111100                      000 00000112334443 2     22344444444444457788899999


Q ss_pred             HHHhhCCcchHHHHHHHHHHHHHHHHHHHHHhhhccCch---hhHhh-hccc-----------hhHHHHHHHHHHHHHHh
Q psy6665         233 FLEDMGSRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRR---SLTMF-SQIE-----------KSLIPVFCILFYVAISV  297 (420)
Q Consensus       233 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~---~~~~~-~~~~-----------~~~~~~~~~~~~~~~~~  297 (420)
                      ++++.|++...+.......+.+.   +..++++||..||   +.... ....           .+............++.
T Consensus       218 ~L~~~g~s~~~~~~~~l~~~~g~---~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~  294 (368)
T TIGR00903       218 ALRPAGLEDIAGDAVALAILAGL---IGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLM  294 (368)
T ss_pred             HHHHCCCChHHHHHHHHHHHHHH---HHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhh
Confidence            99877773334444444444444   4457788887543   22221 1111           11111111122222223


Q ss_pred             hchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhh
Q psy6665         298 IGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVY  368 (420)
Q Consensus       298 ~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  368 (420)
                      .+..+..+++.+|.+|++.|+++.|+.+..+++++..+|.+.+.+..  | ....|.++++..+++.+...
T Consensus       295 ~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~-~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       295 LPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--S-AEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             hhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--C-HHHHHHHHHHHHHHHHHHHH
Confidence            33345567899999999999999999999999999999999988773  5 67788888887777777653

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.97  E-value=2.9e-29  Score=235.39  Aligned_cols=315  Identities=16%  Similarity=0.174  Sum_probs=207.3

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--H--------HHHHhhccccccchhHHHHHH
Q psy6665           9 LATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--T--------QLIMTGQIEKSLIPVFCILFY   77 (420)
Q Consensus         9 ~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~--------~~~~~~r~~~~~~~~~~~~~l   77 (420)
                      ...++..+++..+|+++ |+++||+|||+++..+.+++++++++++++  +        ..+++.|            ++
T Consensus        66 ~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R------------~l  133 (432)
T PRK10406         66 AGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLAR------------LF  133 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHH------------HH
Confidence            34556667777799999 999999999999999999999999999876  3        2588999            99


Q ss_pred             HHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhh------------hhhhHHHHHhHhhhccccc
Q psy6665          78 VAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGA------------VLHWRTVAWLSLAYILIPS  145 (420)
Q Consensus        78 ~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~------------~~~wr~~f~~~~~~~~~~~  145 (420)
                      +|++.| ...+...+++.|++|+++|+++.++.+.+...|.++++.+..            ..|||++|++.+++.++. 
T Consensus       134 ~G~g~g-~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~-  211 (432)
T PRK10406        134 QGLSVG-GEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA-  211 (432)
T ss_pred             HHhhhh-hhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH-
Confidence            999999 666779999999999999999999998888888877775432            238999999988877664 


Q ss_pred             cceeeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhh
Q psy6665         146 PVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYI  225 (420)
Q Consensus       146 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (420)
                       .++ ++ ..+|.++           .+.       ++    .+++.++++.++ ++    +.........+......+.
T Consensus       212 -~~~-~~-~~~e~~~-----------~~~-------~~----~~~~~~~~~l~~-~~----~~~~~~~~~~~~~~~~~~~  261 (432)
T PRK10406        212 -LWL-RR-QLDETSQ-----------QET-------RA----LKEAGSLKGLWR-NR----RAFIMVLGFTAAGSLCFYT  261 (432)
T ss_pred             -HHH-Hh-cCCCCch-----------HHH-------hh----hcccccHHHHHh-hH----HHHHHHHHHHHHHHHHHHH
Confidence             221 11 1111000           000       00    001123344443 11    1112222222222234566


Q ss_pred             HHHhHHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc---h----------h-HHHHHHH
Q psy6665         226 TIFYAVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE---K----------S-LIPVFCI  289 (420)
Q Consensus       226 ~~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~---~----------~-~~~~~~~  289 (420)
                      ...|.|.++++. |+ ..+.+.......+...++.++.|+++||++||+.+.....+   .          . .......
T Consensus       262 ~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (432)
T PRK10406        262 FTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFG  341 (432)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence            788999998764 77 55666667777777888889999999999999876654332   0          0 0011111


Q ss_pred             HHHHHHHhhc-hhhHHHHHhcccCChhhhhhhHHHHHHHHHH-HHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHh
Q psy6665         290 LFYVAISVIG-MLSIPWTMTAEIFPLEIRGIAQGLTFCLAHI-LMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYV  367 (420)
Q Consensus       290 ~~~~~~~~~~-~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  367 (420)
                      ......+..+ ..+..+.+.+|.+|++.|+++.|+.+...++ .+...|.+.+. .+..|++...++..++..+++.+..
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~-l~~~g~~~~~~~~~~~~~~i~~~~~  420 (432)
T PRK10406        342 LVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALS-LKSIGMETAFFWYVTLMAVVAFLVS  420 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHHHHH
Confidence            1111111111 2344567889999999999999999988775 34457777775 4556634445555555555555554


Q ss_pred             h
Q psy6665         368 Y  368 (420)
Q Consensus       368 ~  368 (420)
                      +
T Consensus       421 ~  421 (432)
T PRK10406        421 L  421 (432)
T ss_pred             H
Confidence            4

>PRK09952 shikimate transporter; Provisional

Probab=99.97  E-value=1.2e-28  Score=231.18  Aligned_cols=322  Identities=16%  Similarity=0.168  Sum_probs=210.5

Q ss_pred             HHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HH--------HHHhhccccccchhHHHHHHHHHH
Q psy6665          13 LVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQ--------LIMTGQIEKSLIPVFCILFYVAIS   81 (420)
Q Consensus        13 ~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~--------~~~~~r~~~~~~~~~~~~~l~G~~   81 (420)
                      ++.+++..+|+++ |+++||+|||++++.+.+++++++++++++  ++        .+++.|            +++|++
T Consensus        71 ~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R------------~l~G~~  138 (438)
T PRK09952         71 GVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLR------------AIQGFA  138 (438)
T ss_pred             HHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH------------HHHHhh
Confidence            4567788899999 999999999999999999999999999998  54        588899            999999


Q ss_pred             hhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhh------------hhhhHHHHHhHhhhcccccccee
Q psy6665          82 VIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGA------------VLHWRTVAWLSLAYILIPSPVWL  149 (420)
Q Consensus        82 ~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~------------~~~wr~~f~~~~~~~~~~~~~~l  149 (420)
                      .| ...+....++.|++|+++|++..+..+.+..+|.+++..+..            ..+||.+|++.+++.++.  .++
T Consensus       139 ~g-~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~--~~l  215 (438)
T PRK09952        139 VG-GEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIA--LWV  215 (438)
T ss_pred             hc-ccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHH--HHH
Confidence            99 666668899999999999999999999999999888865543            248999999988776553  111


Q ss_pred             eecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHH-HHhhccccchHHHHHHHHHHHHHhcchhhHHH
Q psy6665         150 LNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLI-KMVTMATGIKPLLVITVLFALQQLAGIYITIF  228 (420)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (420)
                        +...+|..+..+. +               .+.+ +.+++.+..+ .++ ++   +.... .....+......+....
T Consensus       216 --~~~~~es~~~~~~-~---------------~~~~-~~~~~~~~~~~l~~-~~---~~~~~-~~~~~~~~~~~~~~~~~  271 (438)
T PRK09952        216 --RNGMEESAEFEQQ-Q---------------HEQA-AAKKRIPVIEALLR-HP---GAFLK-IIALRLCELLTMYIVTA  271 (438)
T ss_pred             --HHhCCCChhHHHH-H---------------hhcc-cccccCCHHHHHHH-ch---HHHHH-HHHHHHHHHHHHHHHHH
Confidence              1111111100000 0               0000 0000111111 222 11   11111 11112222223556777


Q ss_pred             hHHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccch--------------hHHHHHHHHHH
Q psy6665         229 YAVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIEK--------------SLIPVFCILFY  292 (420)
Q Consensus       229 ~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~--------------~~~~~~~~~~~  292 (420)
                      |.|.|+++. |+ ...........++..+++.++.|+++||++||+.+..+..+.              +....+.....
T Consensus       272 ~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (438)
T PRK09952        272 FALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIM  351 (438)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            888888654 66 333334444556777888999999999999998877664430              01111111111


Q ss_pred             H-HHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHH-HHHHHHHHHhHHHHHhcC-cchHHHHHHHHHHHHHHHHhhh
Q psy6665         293 V-AISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAH-ILMFFALQYYPWFKDSVG-GSAMVQWFFALISVISIVYVYI  369 (420)
Q Consensus       293 ~-~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~-~~~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~  369 (420)
                      . ........+..+++..|.+|++.|+++.|+.+.... +++.++|.+.+++.+..+ ++...+...+++.+++.+..+ 
T Consensus       352 l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~-  430 (438)
T PRK09952        352 LANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTAL-  430 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH-
Confidence            1 111122245567899999999999999999776654 889999999999988653 355666666666666655553 


Q ss_pred             ccccC
Q psy6665         370 FLPET  374 (420)
Q Consensus       370 ~~~~~  374 (420)
                      ..+|+
T Consensus       431 ~~~~~  435 (438)
T PRK09952        431 LMKDN  435 (438)
T ss_pred             Hcccc
Confidence            44543

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.97  E-value=6.1e-29  Score=234.47  Aligned_cols=343  Identities=11%  Similarity=0.015  Sum_probs=221.6

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh------HHHHHhhccccccchhHHH
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY------TQLIMTGQIEKSLIPVFCI   74 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------~~~~~~~r~~~~~~~~~~~   74 (420)
                      |.+.++.....+.+.++..+++++ |+++||+|||++++.+.++.+++.+.+++.      ++.+++.|           
T Consensus        59 g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----------  127 (452)
T PRK11273         59 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLL-----------  127 (452)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHH-----------
Confidence            456677888899999999999999 999999999999999999999998887763      55677888           


Q ss_pred             HHHHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHH-HHHHHHhhh----hhhHHHHHhHhhhcccc-ccce
Q psy6665          75 LFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGM-VIVYALGAV----LHWRTVAWLSLAYILIP-SPVW  148 (420)
Q Consensus        75 ~~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~-~~~~~~~~~----~~wr~~f~~~~~~~~~~-~~~~  148 (420)
                       ++.|++.+ ...+.....+.|++|+++|++++++.+.+.++|. +.++.++..    .+||+.|++.+++.++. ...+
T Consensus       128 -~l~gi~~g-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~  205 (452)
T PRK11273        128 -FLCGWFQG-MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAF  205 (452)
T ss_pred             -HHHHHHHh-ccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence             99999999 7766577889999999999999999999999886 445544322    28999999887765553 1122


Q ss_pred             eeecCcHHHHH-HHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHH
Q psy6665         149 LLNKGRANQAL-KSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITI  227 (420)
Q Consensus       149 l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (420)
                      +..++++++.. +...+..+   +.+        ++..++++++.+.++.+. +...+.+.++...+..+......+...
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~---~~~--------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~  273 (452)
T PRK11273        206 AMMRDTPQSCGLPPIEEYKN---DYP--------DDYNEKHEQELTAKQIFM-QYVLPNKLLWYIAIANVFVYLLRYGIL  273 (452)
T ss_pred             HHccCCHhhcCCCChhhhhh---ccc--------cccccccCCCccHHHHHH-HHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence            23333332210 00000000   000        000000000111122111 111122223333233222222345677


Q ss_pred             HhHHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhcc--CchhhHh-hhccc------------hhHHHHHHHH
Q psy6665         228 FYAVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTY--GRRSLTM-FSQIE------------KSLIPVFCIL  290 (420)
Q Consensus       228 ~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~-~~~~~------------~~~~~~~~~~  290 (420)
                      .|.|.|+++. |+ ..+.+....+..++.+++.++.|+++||+  +||.... ....+            ..........
T Consensus       274 ~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  353 (452)
T PRK11273        274 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMAC  353 (452)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHH
Confidence            8999999875 77 56677777788889999999999999999  4443221 11111            0011111111


Q ss_pred             HHHHHHh-hchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHH-HHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhh
Q psy6665         291 FYVAISV-IGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFF-ALQYYPWFKDSVGGSAMVQWFFALISVISIVYVY  368 (420)
Q Consensus       291 ~~~~~~~-~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~-~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  368 (420)
                      .+..+.. .+.......+..|.+|++.||++.|+.+...++++.+ +|.+.|.+.|+.| +...|++.++.++++++...
T Consensus       354 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g-~~~~f~~~~~~~~~~~~~~~  432 (452)
T PRK11273        354 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLI  432 (452)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc-chHHHHHHHHHHHHHHHHHH
Confidence            1111111 1222223356779999999999999999999998765 7999999999999 88888888887777766654


Q ss_pred             hc
Q psy6665         369 IF  370 (420)
Q Consensus       369 ~~  370 (420)
                      .+
T Consensus       433 ~~  434 (452)
T PRK11273        433 VV  434 (452)
T ss_pred             HH
Confidence            33

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.97  E-value=1.6e-28  Score=229.31  Aligned_cols=333  Identities=16%  Similarity=0.115  Sum_probs=221.8

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFY   77 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l   77 (420)
                      +|.+..+.....+++.++..++.++ |+++||+|||++++.+.++.+++.+++++.  ++.+++.|            ++
T Consensus        42 ~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------~l  109 (405)
T TIGR00891        42 FGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIAR------------LV  109 (405)
T ss_pred             hCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH------------HH
Confidence            3667788888999999999999999 999999999999999999999999998887  88899999            99


Q ss_pred             HHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----h--hHHHHHhHhhhccccccceeee
Q psy6665          78 VAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----H--WRTVAWLSLAYILIPSPVWLLN  151 (420)
Q Consensus        78 ~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~--wr~~f~~~~~~~~~~~~~~l~~  151 (420)
                      .|++.+ ...+...+++.|++|+++|+++.++.+.+..+|..+++.++..+    +  ||+.|++.++..++........
T Consensus       110 ~G~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~  188 (405)
T TIGR00891       110 IGIGMG-GEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNI  188 (405)
T ss_pred             HHhhhh-hhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999 77777899999999999999999999999999999999887765    4  9999988766555441111112


Q ss_pred             cCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhHH
Q psy6665         152 KGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAV  231 (420)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (420)
                      +++++..++ .+.    +....+...+...++...+...+.......+..+..+...........+... .......+.|
T Consensus       189 ~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  262 (405)
T TIGR00891       189 PEAEDWKEK-HAG----KALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANL-YSHPIQDLLP  262 (405)
T ss_pred             CCChhHHHH-hhh----hhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHH-HHhhhhhhhH
Confidence            222111100 000    0000000000000000000000000011111011111111111222222111 2334556778


Q ss_pred             HHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc------------hhHHHHHHHHHHHHHHh
Q psy6665         232 QFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE------------KSLIPVFCILFYVAISV  297 (420)
Q Consensus       232 ~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~  297 (420)
                      .++.+. |+ ..+.+.......++.+++.++.+++.||++||+.+..+...            .+...............
T Consensus       263 ~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (405)
T TIGR00891       263 TYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLV  342 (405)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            887654 77 66777888888999999999999999999999887655443            11111111112222333


Q ss_pred             hchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHH
Q psy6665         298 IGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMV  352 (420)
Q Consensus       298 ~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~  352 (420)
                      .+..+....++.|.+|++.|++++|+.+...+++..++|.+.|.+.|+.|++...
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~  397 (405)
T TIGR00891       343 QGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTA  397 (405)
T ss_pred             ccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchh
Confidence            3445566688899999999999999999999999999999999999998844433

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.97  E-value=8.5e-29  Score=228.80  Aligned_cols=321  Identities=12%  Similarity=0.020  Sum_probs=223.2

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFY   77 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l   77 (420)
                      +|.+.++.....+++.++..+++++ |+++||+|||+++..+.++.+++.+.++++  ++.+++.|            ++
T Consensus        33 ~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~  100 (377)
T TIGR00890        33 FGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTY------------GL  100 (377)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHH------------HH
Confidence            3667888899999999999999999 999999999999999999999999999888  88999999            99


Q ss_pred             HHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccc-ccceeeec
Q psy6665          78 VAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIP-SPVWLLNK  152 (420)
Q Consensus        78 ~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~-~~~~l~~~  152 (420)
                      .|++.+ ...+.....+.|++| ++|+++.++...+.++|..+++.+...+    +||+.|++.+++.++. .+.++..+
T Consensus       101 ~g~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  178 (377)
T TIGR00890       101 ASAGVG-IAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIG  178 (377)
T ss_pred             HhHHHH-HHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhee
Confidence            999999 666657778899986 6799999999999999987655444433    7999999888776654 12222222


Q ss_pred             CcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhHHH
Q psy6665         153 GRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQ  232 (420)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (420)
                      +++++..       +              ++ ++.++++.+.++.++ ++..+ ...    ...+...........+.+.
T Consensus       179 ~~~~~~~-------~--------------~~-~~~~~~~~~~~~~~~-~~~~~-~~~----~~~~~~~~~~~~~~~~~~~  230 (377)
T TIGR00890       179 YPPGQLI-------K--------------TN-IEVSVKDYTVWEMLR-TPQFW-VLY----LSFFLNAVSGLLLIGLYKP  230 (377)
T ss_pred             cCchhcc-------c--------------cC-cccchhhhhHHHHHc-CccHH-HHH----HHHHHHhHHHHHHHHHHHH
Confidence            2111100       0              00 000001112223332 22211 111    1111111122334455566


Q ss_pred             HHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hh-HHHHH-HHHHHHHHHhh
Q psy6665         233 FLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KS-LIPVF-CILFYVAISVI  298 (420)
Q Consensus       233 ~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~-~~~~~-~~~~~~~~~~~  298 (420)
                      +.++.+. ..+.+.......+..++++++.+++.||++||+.+..+...           .. ..... ...........
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g  310 (377)
T TIGR00890       231 YGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWG  310 (377)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhc
Confidence            6666677 55667778888999999999999999999999887666544           11 11111 11111222222


Q ss_pred             chhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHH
Q psy6665         299 GMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISI  364 (420)
Q Consensus       299 ~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  364 (420)
                      ...+....+..|.+|+++|+++.|+.+....++..++|.+.|.+.++.| +...+.+.+++.+++.
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       311 GTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIG-FEYTFIVTGAFALTSL  375 (377)
T ss_pred             cchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHhc
Confidence            2334455788899999999999999999999999999999999999988 8888877777666543

>PRK15075 citrate-proton symporter; Provisional

Probab=99.97  E-value=1.9e-28  Score=230.01  Aligned_cols=290  Identities=16%  Similarity=0.225  Sum_probs=192.3

Q ss_pred             HHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HH--------HHHhhccccccchhHHHHHHHHHHhhc
Q psy6665          16 VVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQ--------LIMTGQIEKSLIPVFCILFYVAISVIA   84 (420)
Q Consensus        16 ~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~--------~~~~~r~~~~~~~~~~~~~l~G~~~~~   84 (420)
                      .++..+++++ |+++||+|||++++.+.+++++++++++++  ++        .+++.|            +++|++.+ 
T Consensus        66 ~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R------------~l~G~~~g-  132 (434)
T PRK15075         66 FLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGR------------LLQGFSAG-  132 (434)
T ss_pred             HHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH------------HHhhcccc-
Confidence            3344578899 999999999999999999999999999988  54        468899            99999999 


Q ss_pred             ccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhh------------hhhHHHHHhHhhhccccccceeeec
Q psy6665          85 MGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAV------------LHWRTVAWLSLAYILIPSPVWLLNK  152 (420)
Q Consensus        85 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~------------~~wr~~f~~~~~~~~~~~~~~l~~~  152 (420)
                      ...+....++.|++|+++|++++++...+.++|..+++.++..            .|||++|++..+...+.   ++ .+
T Consensus       133 ~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~---~~-~~  208 (434)
T PRK15075        133 VELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFI---FL-IR  208 (434)
T ss_pred             ccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH---HH-HH
Confidence            7676688999999999999999999888877776666655443            38999999865543322   11 11


Q ss_pred             CcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhHHH
Q psy6665         153 GRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQ  232 (420)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (420)
                      ++.+|.++..+                  ++  ++.+.++..++..+    .++ .........+.+....+....|.|.
T Consensus       209 ~~~~e~~~~~~------------------~~--~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~p~  263 (434)
T PRK15075        209 RSLEETEEFLA------------------RK--HRPSMREIFRSLAA----NWR-IVLAGMLMVAMTTVSFYLITVYTPT  263 (434)
T ss_pred             HhcCCCHHHHH------------------hh--hccccccHHHHHHH----hHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111000000                  00  00000111111111    111 1112122222233346678889999


Q ss_pred             HHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccch--------------h-HHHHHHHHHHHHH
Q psy6665         233 FLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIEK--------------S-LIPVFCILFYVAI  295 (420)
Q Consensus       233 ~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~--------------~-~~~~~~~~~~~~~  295 (420)
                      |+++. |+ ..+.........++.+++.++.|+++||++||+.+..+..+.              . .........+...
T Consensus       264 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (434)
T PRK15075        264 FGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSF  343 (434)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            99874 88 566677777788889999999999999999998876543320              0 0001111111112


Q ss_pred             HhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHH-HHHHHHHHhHHHHHhcC
Q psy6665         296 SVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHI-LMFFALQYYPWFKDSVG  347 (420)
Q Consensus       296 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-~~~~~~~~~g~l~~~~g  347 (420)
                      +.....+..+.+..|.+|++.|+++.|+.+..... ++.++|.+.|++.|+.|
T Consensus       344 ~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g  396 (434)
T PRK15075        344 LYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG  396 (434)
T ss_pred             HHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence            22223444557889999999999999997666654 58889999999999988

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.97  E-value=2.5e-29  Score=236.67  Aligned_cols=340  Identities=10%  Similarity=0.096  Sum_probs=221.8

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHH-hhccccccchhHHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIM-TGQIEKSLIPVFCILF   76 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~-~~r~~~~~~~~~~~~~   76 (420)
                      +|.+.++.....+.+.++..++.++ |+++||+|||++++.+.++.++++++++++  ++.++ ..|            +
T Consensus        49 ~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------~  116 (455)
T TIGR00892        49 FQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAG------------F  116 (455)
T ss_pred             hCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHH------------H
Confidence            3567777888888888888999999 999999999999999999999999998887  66654 468            8


Q ss_pred             HHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccccc-ceeee
Q psy6665          77 YVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIPSP-VWLLN  151 (420)
Q Consensus        77 l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~~~-~~l~~  151 (420)
                      +.|++.+ ...+....++.++++ ++|+++.++.+.+..+|..++|.+++.+    |||+.|++.+++.++... .++..
T Consensus       117 l~G~~~~-~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~  194 (455)
T TIGR00892       117 ITGLGLA-FNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMR  194 (455)
T ss_pred             HHHhcch-hhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999 654557788899995 7899999999999999998888877665    899999999887654411 12222


Q ss_pred             cCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhH--HHHHhhccccchHHHHHHHHHHHHHhcchhhHHHh
Q psy6665         152 KGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSAR--LIKMVTMATGIKPLLVITVLFALQQLAGIYITIFY  229 (420)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (420)
                      +.+.++.........+.+.+...  ++   .+.....++..+.  .+.++      ++.++......+......+....+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~  263 (455)
T TIGR00892       195 PVGPSQRVSKSKSKEGLPPDGST--KK---LSKKSTAEKINRFLDFSLFT------HRGFLVYLSGNVIMFLGFFAPIIF  263 (455)
T ss_pred             CCCcccccccccccccCCCCCcc--cc---ccccchhhhhhhhcchHHhc------CchHHHHHHHHHHHHHHccchHHH
Confidence            21111000000000000000000  00   0000000000010  11221      222222222222222334556678


Q ss_pred             HHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhcc--CchhhHhh--hccc-----------hhHHHHHHHHHHH
Q psy6665         230 AVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTY--GRRSLTMF--SQIE-----------KSLIPVFCILFYV  293 (420)
Q Consensus       230 ~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~--~~~~-----------~~~~~~~~~~~~~  293 (420)
                      .|.|.++.|+ ..+.+......+++.++++++.+++.||.  ++|+....  +...           .+...+....+..
T Consensus       264 l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~  343 (455)
T TIGR00892       264 LVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFF  343 (455)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence            8888887788 77788888888999999999999999973  33322221  1111           2222222222232


Q ss_pred             HHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHH
Q psy6665         294 AISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIV  365 (420)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  365 (420)
                      +.......+...+++.|.+|+++++++.|+.+....++++++|.+.|.+.+..|++...+++.+++.+++.+
T Consensus       344 G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       344 GLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            222223355666888899999999999999999999999999999999999886577777777776665554

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.97  E-value=7.5e-28  Score=230.59  Aligned_cols=342  Identities=15%  Similarity=0.115  Sum_probs=224.5

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFY   77 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l   77 (420)
                      +|.+..+.....+...++..++.++ |+++||+|||++++.+.++.+++.+++++.  ++.+++.|            ++
T Consensus        50 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------~l  117 (496)
T PRK03893         50 FGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIAR------------LV  117 (496)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH------------HH
Confidence            3567777888889999999999999 999999999999999999999999998888  88899999            99


Q ss_pred             HHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhccccccceeeecC
Q psy6665          78 VAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIPSPVWLLNKG  153 (420)
Q Consensus        78 ~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~~~~~l~~~~  153 (420)
                      .|++.+ ...+....++.|++|+++|++++++...+..+|..+++.+...+    +||+.|++..+..++.   ++..+.
T Consensus       118 ~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~~---~~~~~~  193 (496)
T PRK03893        118 IGMGMA-GEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFA---LWLRKN  193 (496)
T ss_pred             HHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH---HHHHHh
Confidence            999999 66666889999999999999999999999999999999887765    8999998765544332   111111


Q ss_pred             cHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhh------hHHHHH-------------------------hhcc
Q psy6665         154 RANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLS------ARLIKM-------------------------VTMA  202 (420)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-------------------------~~~~  202 (420)
                      .+++.+. ..+ .+......+. .+......++......      .....+                         ....
T Consensus       194 ~p~~~~~-~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (496)
T PRK03893        194 LPEAEDW-KEK-HAGKAPVRTM-VDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSS  270 (496)
T ss_pred             CCCchhh-hhh-ccccccchhH-HHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhc
Confidence            0000000 000 0000000000 0000000000000000      000000                         0001


Q ss_pred             ccchHHHHHHHHHHHHHhcchhhHHHhHHHHHH-hhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc
Q psy6665         203 TGIKPLLVITVLFALQQLAGIYITIFYAVQFLE-DMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE  280 (420)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~  280 (420)
                      ..+++.........+......+....+.|.+++ +.|+ ..+.+.......++.+++.++.|+++||++||+.+..+..+
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~  350 (496)
T PRK03893        271 GKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLI  350 (496)
T ss_pred             ccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            111122222222222222222345678899986 4578 77888888989999999999999999999999887766543


Q ss_pred             ------------hhHH-HHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcC
Q psy6665         281 ------------KSLI-PVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVG  347 (420)
Q Consensus       281 ------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g  347 (420)
                                  .... ......+...+...+..+...++..|.+|++.|++++|+.+....+++.++|.+.|.+.++.|
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g  430 (496)
T PRK03893        351 SQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLD  430 (496)
T ss_pred             HHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCC
Confidence                        1111 111111222223334445556788899999999999999999999999999999999999998


Q ss_pred             cchHHHHHHHHHHHH
Q psy6665         348 GSAMVQWFFALISVI  362 (420)
Q Consensus       348 ~~~~~~~~~~~~~~~  362 (420)
                       +...+...++...+
T Consensus       431 -~~~~~~~~~~~~~~  444 (496)
T PRK03893        431 -LGTALASLSFSLTF  444 (496)
T ss_pred             -hHHHHHHHHHHHHH
Confidence             77666555544433

>KOG0255|consensus

Probab=99.97  E-value=1.3e-27  Score=229.68  Aligned_cols=355  Identities=18%  Similarity=0.216  Sum_probs=253.5

Q ss_pred             ccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHHHHH
Q psy6665           4 RMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFYVAI   80 (420)
Q Consensus         4 ~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l~G~   80 (420)
                      +........+++++|.++|+++ |+++||+|||++++.+.++..++.++.+++  ++.+++.|            ++.|+
T Consensus       116 ~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~R------------fl~G~  183 (521)
T KOG0255|consen  116 SSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFR------------FLSGF  183 (521)
T ss_pred             cHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH------------HHHHh
Confidence            3445667889999999999999 999999999999999999999999999999  99999999            99999


Q ss_pred             HhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh--hhHHHHHhHhhhcccc---------cccee
Q psy6665          81 SVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL--HWRTVAWLSLAYILIP---------SPVWL  149 (420)
Q Consensus        81 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~--~wr~~f~~~~~~~~~~---------~~~~l  149 (420)
                      +.+ ........++.|++++++|+.+..+ ......+..+++.++.++  +||+.+++..+++++.         +|+|+
T Consensus       184 ~~~-~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl  261 (521)
T KOG0255|consen  184 FGS-GPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESPRWL  261 (521)
T ss_pred             hcc-chhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcChHHH
Confidence            999 5555599999999999999999999 666666666666666665  8999999988777644         89999


Q ss_pred             eecCcHHHHHHHHHHHhcchh---hhhhhHHHH-hhhccchh-hhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchh
Q psy6665         150 LNKGRANQALKSLKYLARNYK---EVKNKEQEL-KKMNSTKE-NQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIY  224 (420)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (420)
                      ..+++.+++.+.+++..+.+.   +........ +.++.+.. .+++..+.+.++ .+..++..+...+.++      .+
T Consensus       262 ~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~l~~~~~~~~~~~~------~~  334 (521)
T KOG0255|consen  262 LSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFR-TPRLRYRTLYLLFIWF------VF  334 (521)
T ss_pred             HHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhc-CHHHHHHHHHHHHHHH------HH
Confidence            999999998888877755321   111111010 00111111 111233555554 4434555554444442      23


Q ss_pred             hHHHhHHHHHHhhCCcchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-------------hhH--HHHHHH
Q psy6665         225 ITIFYAVQFLEDMGSRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-------------KSL--IPVFCI  289 (420)
Q Consensus       225 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-------------~~~--~~~~~~  289 (420)
                      ...++...+... ++..+.+......+.....+....+...|+.|||.....+..+             ...  ......
T Consensus       335 ~~~y~gl~~~~~-~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (521)
T KOG0255|consen  335 SLVYYGLSLNVS-GLGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILP  413 (521)
T ss_pred             hHHHHhhhhhhh-hcCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence            334444333333 3455677777777778889999999999999999887777666             111  223333


Q ss_pred             HHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhh
Q psy6665         290 LFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYI  369 (420)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  369 (420)
                      .+...+...++. ..+.+..|++|+..|..+.+..+....++++++|.+.-.... .. ....+.+++....+..+++.+
T Consensus       414 ~~~~~~~~~~~~-~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~-~~~~~~~~~~~~~l~~~~~~~  490 (521)
T KOG0255|consen  414 LLGKFFIGSAFN-LIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MF-PLLGLILFGWLALLLGLLSLL  490 (521)
T ss_pred             HHHHHHHHHHHH-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hc-ccchHHHHHHHHHHHHHHHHh
Confidence            333333344444 447999999999999999999999999999999998755444 33 234444467777777777778


Q ss_pred             ccccCCCCChHHHH
Q psy6665         370 FLPETHGRTLLEIE  383 (420)
Q Consensus       370 ~~~~~~~~~~~~~~  383 (420)
                      ++||++++.+.+..
T Consensus       491 ~lpet~~~~l~~t~  504 (521)
T KOG0255|consen  491 LLPETKGKPLPGTL  504 (521)
T ss_pred             cCcccCCCCCchhH
Confidence            99999998875543

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.97  E-value=1.4e-28  Score=232.82  Aligned_cols=327  Identities=13%  Similarity=0.078  Sum_probs=206.4

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFY   77 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l   77 (420)
                      +|.+.++.....+.+.+++.++.++ |+++||+|||+++..+.++++++.++++++  ++.+++.|            ++
T Consensus        66 ~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r------------~l  133 (476)
T PLN00028         66 LNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVR------------FF  133 (476)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH------------HH
Confidence            3566777777888899999999999 999999999999999999999999888887  78888899            99


Q ss_pred             HHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhh-------------hhhHHHHHhHhhhcccc
Q psy6665          78 VAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAV-------------LHWRTVAWLSLAYILIP  144 (420)
Q Consensus        78 ~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~-------------~~wr~~f~~~~~~~~~~  144 (420)
                      .|++.+ ...+ ...++.|++|+++|++++++.+...++|..+++.+...             .+||+.|++.++++++.
T Consensus       134 ~G~~~~-~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~  211 (476)
T PLN00028        134 IGFSLA-TFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIM  211 (476)
T ss_pred             HHHHHH-hhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHH
Confidence            999998 5544 56789999999999999999887666666555433321             37999999988877655


Q ss_pred             cc-ceeeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhh-hhhhhHHHHHhhccccchHHHHHHHHHHHHHhcc
Q psy6665         145 SP-VWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKEN-QSLSARLIKMVTMATGIKPLLVITVLFALQQLAG  222 (420)
Q Consensus       145 ~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (420)
                      .. .++..++++++..   .              +.+ ++.+.++ +....+++.++ .++     .+...+..+.....
T Consensus       212 ~l~~~~~~~~~p~~~~---~--------------~~~-~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~  267 (476)
T PLN00028        212 GILVLTLGQDLPDGNY---R--------------ELK-KSGTMPKDSFSKVLRYGVT-NYR-----TWILALTYGYSFGV  267 (476)
T ss_pred             HHHHHHHcCcCCCCch---h--------------hHH-hcCccccccHHHHHHHHHc-Cch-----hHHHHHHHHHHHHH
Confidence            11 1222221111100   0              000 0000000 00111222222 111     12222222222222


Q ss_pred             hhhHHHhHHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchh-------hHhhhccc-----------hh
Q psy6665         223 IYITIFYAVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRS-------LTMFSQIE-----------KS  282 (420)
Q Consensus       223 ~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-------~~~~~~~~-----------~~  282 (420)
                      ......+.|.++.+. |+ ..+++.......++.++++++.|+++||++||+       .......+           .+
T Consensus       268 ~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~  347 (476)
T PLN00028        268 ELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANS  347 (476)
T ss_pred             HHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccch
Confidence            344666788888665 88 677788888889999999999999999998652       11111111           11


Q ss_pred             HHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHH
Q psy6665         283 LIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVI  362 (420)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  362 (420)
                      ........+..........+..+++..+..| +.+|++.|+.+....+|+.++|.+.+  .+..+++...+.+.+++.++
T Consensus       348 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~--~~~~~~y~~~f~~~~~~~~i  424 (476)
T PLN00028        348 LGAAIVVMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF--TGSSYSTETGISLMGVMIIA  424 (476)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH--hcCCccHhhHHHHHHHHHHH
Confidence            1111111111111111122334566667654 78999999998888888888776654  12223377788888877777


Q ss_pred             HHHHhh
Q psy6665         363 SIVYVY  368 (420)
Q Consensus       363 ~~~~~~  368 (420)
                      +.++.+
T Consensus       425 ~~~~~~  430 (476)
T PLN00028        425 CTLPVA  430 (476)
T ss_pred             HHHHHH
Confidence            766654

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.97  E-value=2.4e-28  Score=228.55  Aligned_cols=338  Identities=12%  Similarity=-0.007  Sum_probs=232.4

Q ss_pred             CccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHH-----h--HHHHHhhccccccchhHHH
Q psy6665           3 SRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGY-----Y--TQLIMTGQIEKSLIPVFCI   74 (420)
Q Consensus         3 ~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~--~~~~~~~r~~~~~~~~~~~   74 (420)
                      .+..+.....+.+.++..+++++ |+++||+|||+++..+..+.+++.+..+.     .  ++.+++.|           
T Consensus        49 ~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------  117 (417)
T PRK10489         49 GSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLG-----------  117 (417)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHH-----------
Confidence            35566788889999999999999 99999999999999988888777665542     2  67778889           


Q ss_pred             HHHHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhccccccceee
Q psy6665          75 LFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIPSPVWLL  150 (420)
Q Consensus        75 ~~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~~~~~l~  150 (420)
                       ++.|++.+ ...+...+++.|+.|+++|+++.++.....++|..+++.+++.+    +|++.|++.++..++.....+.
T Consensus       118 -~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (417)
T PRK10489        118 -LWDGFFGS-LGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLR  195 (417)
T ss_pred             -HHHHHHHH-HHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence             99999988 77776888999999999999999999999999999999888765    7999998877665544111111


Q ss_pred             ecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhH
Q psy6665         151 NKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYA  230 (420)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (420)
                      .++..++              .+        ++.++.++.++.++..++ ++..+ .......+   ...  ......+.
T Consensus       196 l~~~~~~--------------~~--------~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~---~~~--~~~~~~~~  246 (417)
T PRK10489        196 LPALPPP--------------PQ--------PREHPLRSLLAGFRFLLA-SPVVG-GIALLGGL---LTM--ASAVRVLY  246 (417)
T ss_pred             CCCCCCC--------------Cc--------ccccchHHHHHHHHHHHc-ChHHH-HHHHHHHH---HHH--HHhHHHhh
Confidence            1110000              00        000000001112222222 22111 11111111   111  23456678


Q ss_pred             HHHHHh-hCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc----------hhHHHHHHHHHHHHHHhh
Q psy6665         231 VQFLED-MGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE----------KSLIPVFCILFYVAISVI  298 (420)
Q Consensus       231 ~~~~~~-~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~  298 (420)
                      |.+.++ .|. +...+.......++.+++.++.+++.||.++++.+..+..+          .+............+...
T Consensus       247 p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  326 (417)
T PRK10489        247 PALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLS  326 (417)
T ss_pred             HHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence            888888 477 66777888888899999999999999998777665554433          111112222222222222


Q ss_pred             ch-hhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhccccCCCC
Q psy6665         299 GM-LSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFLPETHGR  377 (420)
Q Consensus       299 ~~-~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (420)
                      +. .+...++..|..|++.||+++|+.+...+++..++|.+.|.+.+..| ....+...+++..+..++....+++++++
T Consensus       327 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (417)
T PRK10489        327 AISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT-PVASASASGFGLLIIGVLLLLVLGELRRF  405 (417)
T ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHHHHhccccccc
Confidence            22 34555788999999999999999999999999999999999999998 77788777777777777766777877766


Q ss_pred             ChHHHH
Q psy6665         378 TLLEIE  383 (420)
Q Consensus       378 ~~~~~~  383 (420)
                      +.+|.+
T Consensus       406 ~~~~~~  411 (417)
T PRK10489        406 RQTPPE  411 (417)
T ss_pred             cccccc
Confidence            655443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.96  E-value=1.8e-27  Score=221.56  Aligned_cols=316  Identities=14%  Similarity=0.076  Sum_probs=219.5

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh----------HHHHHhhccccccc
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY----------TQLIMTGQIEKSLI   69 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----------~~~~~~~r~~~~~~   69 (420)
                      +|.+..+.....+.+.++..+++++ |+++||+|||++++.+.++.+++.+.+.++          ++.+++.|      
T Consensus        46 ~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r------  119 (399)
T PRK05122         46 LGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGR------  119 (399)
T ss_pred             cCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHH------
Confidence            3567788889999999999999999 999999999999999999988877766543          34678899      


Q ss_pred             hhHHHHHHHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhccccc
Q psy6665          70 PVFCILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIPS  145 (420)
Q Consensus        70 ~~~~~~~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~~  145 (420)
                            +++|++.+ ...+...+++.|++|+++|++++++.+.+..+|..+++.++..+    +||..+++..+..++. 
T Consensus       120 ------~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~-  191 (399)
T PRK05122        120 ------LLLGIGES-LAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLG-  191 (399)
T ss_pred             ------HHHHhhHH-hhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH-
Confidence                  99999999 77777888999999999999999999988888888888877665    8999988777665543 


Q ss_pred             cceeeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhh
Q psy6665         146 PVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYI  225 (420)
Q Consensus       146 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (420)
                       .++. +..+++.              +        +     ++++.+.++.++   ..+.... ...+.    ......
T Consensus       192 -~~~~-~~~~~~~--------------~--------~-----~~~~~~~~~~~~---~~~~~~~-~~~~~----~~~~~~  234 (399)
T PRK05122        192 -LLLA-RPRPAVP--------------P--------V-----KGERLPFRRVLG---RVWPYGM-GLALA----SIGFGT  234 (399)
T ss_pred             -HHHH-hcCCCCC--------------C--------C-----CccchhHHHHHH---HHHHHHH-HHHHH----HHHHHH
Confidence             1111 1100000              0        0     000011112111   1111111 11111    112334


Q ss_pred             HHHhHHHHHHhhCCcchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHHHHH
Q psy6665         226 TIFYAVQFLEDMGSRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILFYVA  294 (420)
Q Consensus       226 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~  294 (420)
                      ...+.+.++.+.|. .+.+.......++.+++.++.+++.||+++|+.+..+..+           .+........++.+
T Consensus       235 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  313 (399)
T PRK05122        235 IATFITLYYAARGW-DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTG  313 (399)
T ss_pred             HHHHHHHHHHHccc-ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            55677777766565 3344555677788899999999999999999877665443           12222222222222


Q ss_pred             HHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhh
Q psy6665         295 ISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYI  369 (420)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  369 (420)
                      .......+.......|..|++.|+++.|+.+....++..++|.+.|.+.+..| ++..+.+.+++++++.+...+
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~  387 (399)
T PRK05122        314 FGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFG-YPSIFLAAALAALLGLALTWL  387 (399)
T ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHH
Confidence            22222344445667788999999999999999999999999999999999988 888888888877777666543

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.96  E-value=2.4e-28  Score=229.57  Aligned_cols=348  Identities=11%  Similarity=0.018  Sum_probs=228.7

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh------HHHHHhhccccccchhHHH
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY------TQLIMTGQIEKSLIPVFCI   74 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------~~~~~~~r~~~~~~~~~~~   74 (420)
                      |.+.++.....+++.++..++.++ |+++||+|||+++..+.++.+++.+++++.      ++.+.+.|           
T Consensus        57 g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------  125 (438)
T TIGR00712        57 GFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLL-----------  125 (438)
T ss_pred             CCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHH-----------
Confidence            567778888999999999999999 999999999999999999999988877652      55667788           


Q ss_pred             HHHHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhh-----hhhHHHHHhHhhhcccc-ccce
Q psy6665          75 LFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAV-----LHWRTVAWLSLAYILIP-SPVW  148 (420)
Q Consensus        75 ~~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~-----~~wr~~f~~~~~~~~~~-~~~~  148 (420)
                       ++.|++.+ ...+.....+.|++|+++|++++++.+.+.++|..+++.+...     .+||..|++.++++++. ...+
T Consensus       126 -~l~g~~~g-~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~  203 (438)
T TIGR00712       126 -FLNGWFQG-MGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAF  203 (438)
T ss_pred             -HHHHHHhh-cchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence             99999999 7666688899999999999999999999999988888765443     28999999988776654 2223


Q ss_pred             eeecCcHHHHH-HHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHH
Q psy6665         149 LLNKGRANQAL-KSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITI  227 (420)
Q Consensus       149 l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (420)
                      +..++++++.. +...+.+++   .+        ++..++++.+.+.++.+. +...+.+.++......+......+...
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~---~~--------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (438)
T TIGR00712       204 AMMRDTPQSCGLPPIEEYRND---YP--------DDYNEKAEQELTAKEIFM-QYVLPNKLLWYIAIANVFVYLLRYGVL  271 (438)
T ss_pred             HhccCCHHhcCCCCchhcccc---cc--------cccccccccccchHHHHH-HHHccCchHHHHHHHHHHHHHHHHHHH
Confidence            33333322110 000000000   00        000000000001111111 011122223333222222333356677


Q ss_pred             HhHHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchh-hHhhh-cc----c----------hhHHHHHHH
Q psy6665         228 FYAVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRS-LTMFS-QI----E----------KSLIPVFCI  289 (420)
Q Consensus       228 ~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-~~~~~-~~----~----------~~~~~~~~~  289 (420)
                      .|.|.|+++. |+ +.+.+.......+.++++.++.|+++||+++++ ..... ..    .          .+.......
T Consensus       272 ~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (438)
T TIGR00712       272 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMIC  351 (438)
T ss_pred             HhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence            8999999875 77 667777788888999999999999999995432 22111 00    0          011111111


Q ss_pred             HHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHH-HHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhh
Q psy6665         290 LFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILM-FFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVY  368 (420)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~-~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  368 (420)
                      .+..+....+..........|.+|++.|+++.|+.+...++++ .++|.+.|.+.|+.| +...+.+.+++.+++.+...
T Consensus       352 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~  430 (438)
T TIGR00712       352 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLI  430 (438)
T ss_pred             HHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhcc-chHHHHHHHHHHHHHHHHHH
Confidence            1111111122222223467799999999999999999988875 689999999999998 88888888888877777777


Q ss_pred             hccccCC
Q psy6665         369 IFLPETH  375 (420)
Q Consensus       369 ~~~~~~~  375 (420)
                      ...+|.|
T Consensus       431 ~~~~~~~  437 (438)
T TIGR00712       431 VVMIGEK  437 (438)
T ss_pred             HHHhhcc
Confidence            7777654

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK03699 putative transporter; Provisional

Probab=99.96  E-value=1.4e-27  Score=221.51  Aligned_cols=319  Identities=10%  Similarity=0.009  Sum_probs=225.8

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFY   77 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l   77 (420)
                      +|.|.++.....+.+.++..++.++ |+++||+|||+++..+.++.+++.+++.++  ++.+++.|            ++
T Consensus        37 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~------------~l  104 (394)
T PRK03699         37 FNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAM------------FV  104 (394)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHH------------HH
Confidence            3567778888899999999999999 999999999999999999999999998887  88889999            99


Q ss_pred             HHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh-----hhHHHHHhHhhhccccccceeeec
Q psy6665          78 VAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL-----HWRTVAWLSLAYILIPSPVWLLNK  152 (420)
Q Consensus        78 ~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~-----~wr~~f~~~~~~~~~~~~~~l~~~  152 (420)
                      +|++.+ ...+....++.|++|+++|+++++..+....+|..++|.+...+     +||+.|.+.+++.++....++..+
T Consensus       105 ~G~~~g-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~~~  183 (394)
T PRK03699        105 LGVVSG-ITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTLFSE  183 (394)
T ss_pred             HHHhhH-hhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999 77766889999999999999999998888888888888776543     899999988776655411111111


Q ss_pred             CcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhHHH
Q psy6665         153 GRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQ  232 (420)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (420)
                      .+..+.              +        ++ +++   +..    .  +.. +++.++......+......+.+..|.|.
T Consensus       184 ~p~~~~--------------~--------~~-~~~---~~~----~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~  230 (394)
T PRK03699        184 FPALGK--------------H--------AP-KAD---KPV----A--KEK-WGIGVLFLAIAALLYILAQLTFISWVPE  230 (394)
T ss_pred             Cccccc--------------c--------Cc-ccc---Ccc----c--ccc-CChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            110000              0        00 000   000    0  111 1112222222222222335567789999


Q ss_pred             HHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHHHHHHHhhc
Q psy6665         233 FLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILFYVAISVIG  299 (420)
Q Consensus       233 ~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~  299 (420)
                      |+++. |+ ..+.+.......++..++.++.++++||+++|+.+.....+           .+........+..+....+
T Consensus       231 ~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  310 (394)
T PRK03699        231 YAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSA  310 (394)
T ss_pred             HHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence            99765 88 66778888888899999999999999999999887655443           1111222222222232333


Q ss_pred             hhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHh
Q psy6665         300 MLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYV  367 (420)
Q Consensus       300 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  367 (420)
                      ..+...++..|..|. .++...+.......+|..++|.+.|++.+..| +...++..+++.+++.+.+
T Consensus       311 ~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~  376 (394)
T PRK03699        311 IYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFG-LQAALLTANGLYAVVFVMC  376 (394)
T ss_pred             HHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC-chhhhhhhHHHHHHHHHHH
Confidence            445555666676664 45777888999999999999999999999998 8888877777776665544

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.96  E-value=5.5e-27  Score=216.61  Aligned_cols=322  Identities=11%  Similarity=0.062  Sum_probs=216.6

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFY   77 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l   77 (420)
                      +|.+.++.....+...++..+++++ |+++||+|||+++..+..+.+++.++++++  ++.+++.|            ++
T Consensus        33 ~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r------------~l  100 (382)
T PRK10091         33 VGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGR------------LV  100 (382)
T ss_pred             cCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH------------HH
Confidence            4667778888999999999999999 999999999999999999999999999988  99999999            99


Q ss_pred             HHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhccccc-cceeeec
Q psy6665          78 VAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIPS-PVWLLNK  152 (420)
Q Consensus        78 ~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~~-~~~l~~~  152 (420)
                      .|++.+ ...+....++.|++|+++|++++++...+..+|..+++.++..+    +||+.|++.+++.++.. ..+...+
T Consensus       101 ~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp  179 (382)
T PRK10091        101 SGFPHG-AFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVP  179 (382)
T ss_pred             HHhhhH-HHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999 66666788899999999999999999999999999888877665    89999999887665541 1111111


Q ss_pred             CcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhHHH
Q psy6665         153 GRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQ  232 (420)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (420)
                      +..++                        ++    .+.++.. +.++ ++.     .+...........+......|.+.
T Consensus       180 ~~~~~------------------------~~----~~~~~~~-~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  224 (382)
T PRK10091        180 DIRDE------------------------AK----GGLREQF-HFLR-SPA-----PWLIFAATMFGNAGVFAWFSYIKP  224 (382)
T ss_pred             CCCcc------------------------cc----cCHHHHH-HHhc-ChH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11000                        00    0000011 1111 111     111111111212223334455666


Q ss_pred             HHHh-hCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc------------hhHHHHHHHHHHHHHHhh
Q psy6665         233 FLED-MGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE------------KSLIPVFCILFYVAISVI  298 (420)
Q Consensus       233 ~~~~-~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~  298 (420)
                      ++.+ .|. +.+.+.......++.+++.++.+++.||+++|+.+..+..+            +.................
T Consensus       225 ~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~  304 (382)
T PRK10091        225 YMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLF  304 (382)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            6665 477 67788888889999999999999999999998877655443            111111111111111111


Q ss_pred             chh-hHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhccc
Q psy6665         299 GML-SIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFLP  372 (420)
Q Consensus       299 ~~~-~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  372 (420)
                      +.. +.......+..|.+.++.+  ..+....+|..++|.+.|.+.|..+++...+.+.++++.+.......+.+
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (382)
T PRK10091        305 ALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGR  377 (382)
T ss_pred             hhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHhh
Confidence            222 2222344455555555544  34677889999999999999997654878888777666666655544443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.96  E-value=1.8e-28  Score=232.68  Aligned_cols=337  Identities=11%  Similarity=0.021  Sum_probs=226.7

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh----HHHHHhhccccccchhHHHHH
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY----TQLIMTGQIEKSLIPVFCILF   76 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~   76 (420)
                      +.+..+.....+.+.+++.+++++ |+++||+|||+++..+.++++++.+++.++    ++.+++.|            +
T Consensus        72 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r------------~  139 (465)
T TIGR00894        72 KWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCR------------V  139 (465)
T ss_pred             CCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHH------------H
Confidence            456677788899999999999999 999999999999999999999998887554    67789999            9


Q ss_pred             HHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh-----hhHHHHHhHhhhccccccceee-
Q psy6665          77 YVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL-----HWRTVAWLSLAYILIPSPVWLL-  150 (420)
Q Consensus        77 l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~-----~wr~~f~~~~~~~~~~~~~~l~-  150 (420)
                      ++|++.+ ...+....++.||+|+++|++++++...+..+|..+++.+++.+     +||+.|++.++++++....|+. 
T Consensus       140 ~~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~  218 (465)
T TIGR00894       140 IQGLAQG-SVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVF  218 (465)
T ss_pred             HHHHhcc-cchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHH
Confidence            9999999 77777999999999999999999999999999999998887654     7999999988877655222221 


Q ss_pred             ecCcHHHHHHHHHHHhcchhhhhhhHHHHh--hhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHH
Q psy6665         151 NKGRANQALKSLKYLARNYKEVKNKEQELK--KMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIF  228 (420)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (420)
                      .++++++..        ..  .+.+.+..+  .++.+++.+.+.++++.++      ++.++...+..+......+.+..
T Consensus       219 ~~~~p~~~~--------~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  282 (465)
T TIGR00894       219 PADDPSIHP--------CI--SKFEKKYINSSLQGQKGSTRQSLPIKAIPK------SLPVWAIWFAIFGHFWLYTILPT  282 (465)
T ss_pred             hcCCcccCC--------CC--CHHHHHHHHhhcccccCCCCCCCCHHHHhc------CHHHHHHHHHHHHHHHHHHHHHH
Confidence            222111100        00  000000000  0000001111223444433      23344444444445545677888


Q ss_pred             hHHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhH--------h--hhcc-----c-------hhHH
Q psy6665         229 YAVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLT--------M--FSQI-----E-------KSLI  284 (420)
Q Consensus       229 ~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~--------~--~~~~-----~-------~~~~  284 (420)
                      |.|.|+++. |+ ..+.+.......++.+++.++.|+++||+++|+..        .  .+..     .       ....
T Consensus       283 ~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (465)
T TIGR00894       283 YLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFY  362 (465)
T ss_pred             HHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH
Confidence            999999775 77 67778888888999999999999999997644211        1  1100     0       0111


Q ss_pred             HHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhc--CcchHHHHHHHHHHHH
Q psy6665         285 PVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSV--GGSAMVQWFFALISVI  362 (420)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~--g~~~~~~~~~~~~~~~  362 (420)
                      ..+...........+..+..+....|..|. .+|.+.|+.+..+.+++.++|.+.|.+.+..  +++...+.+.+++.++
T Consensus       363 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i  441 (465)
T TIGR00894       363 LTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNIL  441 (465)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHH
Confidence            111111111111112223333455577664 8999999999999999999999999987754  3356677777777777


Q ss_pred             HHHHhh
Q psy6665         363 SIVYVY  368 (420)
Q Consensus       363 ~~~~~~  368 (420)
                      +.++..
T Consensus       442 ~~i~~~  447 (465)
T TIGR00894       442 CVIFYL  447 (465)
T ss_pred             HHHHee
Confidence            665543

>KOG0252|consensus

Probab=99.96  E-value=1.3e-29  Score=222.09  Aligned_cols=363  Identities=17%  Similarity=0.191  Sum_probs=245.7

Q ss_pred             chHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh---------HHHHHhhccccccchhHHHH
Q psy6665           6 NVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY---------TQLIMTGQIEKSLIPVFCIL   75 (420)
Q Consensus         6 ~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---------~~~~~~~r~~~~~~~~~~~~   75 (420)
                      .....+-.+..+|.++|+++ |++.||+|||+++...++++.++++++++.         ..++...|            
T Consensus        84 ~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R------------  151 (538)
T KOG0252|consen   84 GVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFR------------  151 (538)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHH------------
Confidence            34556677889999999999 999999999999999999999999988876         67889999            


Q ss_pred             HHHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh-------------------hhHHHHHh
Q psy6665          76 FYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL-------------------HWRTVAWL  136 (420)
Q Consensus        76 ~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~-------------------~wr~~f~~  136 (420)
                      ++.|+|.| .-+|...+..+|....++||...+...+.+++|.+.|..++..+                   -||..+.+
T Consensus       152 ~~LGiGIG-GDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~gl  230 (538)
T KOG0252|consen  152 FLLGIGIG-GDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGL  230 (538)
T ss_pred             HHhhcccc-CCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHH
Confidence            99999999 66776899999999999999999998888888777776665544                   39999999


Q ss_pred             Hhhhcccc-ccceeeecCcHHHHHHHHHHHhcc-hhhhhhhHHHHhhhcc-chhhh-hhhhHHHHHh-hccccchHHHHH
Q psy6665         137 SLAYILIP-SPVWLLNKGRANQALKSLKYLARN-YKEVKNKEQELKKMNS-TKENQ-SLSARLIKMV-TMATGIKPLLVI  211 (420)
Q Consensus       137 ~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~-~~~~~~~~~~~~  211 (420)
                      .+++.++. .+++.....+.-++... ++.... ++.....+.+++.++. ....+ .+.+...+.+ +....-+.++-.
T Consensus       231 g~vpa~~~ly~Rl~M~Et~~Y~al~~-~~~~~a~~d~~k~~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt  309 (538)
T KOG0252|consen  231 GAVPALLVLYFRLKMPETARYTALVS-KKLKQAAGDMKKVLSVDIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGT  309 (538)
T ss_pred             HHHHHHHHHHhhhcCCcchhHHHHhh-cCHhhhhhccccccccccchhhccccCCCCcccccchHHHHHHHHHHHHHHHH
Confidence            99988876 23332211111111000 000000 0000000000000000 00111 1111111211 111122344444


Q ss_pred             HHHHHHHHhcchhhHHHhHHHHHHhhCC-cchHHH---------HHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-
Q psy6665         212 TVLFALQQLAGIYITIFYAVQFLEDMGS-RMNVYL---------ATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-  280 (420)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~---------~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-  280 (420)
                      +..++.... .++....+...+++..|+ +.+...         ...+.....++|-.+...++|++|||+..+.++.+ 
T Consensus       310 ~~~WFllDi-afy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~  388 (538)
T KOG0252|consen  310 AGTWFLLDI-AFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIM  388 (538)
T ss_pred             HHHHHhhhh-hhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHH
Confidence            444444443 467777778888887766 333222         11122222233445566789999999998888776 


Q ss_pred             -----------h----hHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHH-
Q psy6665         281 -----------K----SLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKD-  344 (420)
Q Consensus       281 -----------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~-  344 (420)
                                 +    .....++..+...+..+|.......+.+|.+|++.|+++.|+....+..|++++...+.++.+ 
T Consensus       389 ~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~  468 (538)
T KOG0252|consen  389 TIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDH  468 (538)
T ss_pred             HHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhc
Confidence                       1    111233444555666777777777899999999999999999999999999999999999988 


Q ss_pred             ----hcCcchHHHHHHHHHHHHHHHHhhhccccCCCCChHHHHHH
Q psy6665         345 ----SVGGSAMVQWFFALISVISIVYVYIFLPETHGRTLLEIEEY  385 (420)
Q Consensus       345 ----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (420)
                          ..| ....++++++++++..++. +++||+++++++|++++
T Consensus       469 ~yp~~~g-~~~v~~i~~~~~~~gi~~T-~l~pEtk~~~leei~~e  511 (538)
T KOG0252|consen  469 NYPPNIG-VRNVFIILAGCMLLGILFT-LLIPETKGKSLEEISNE  511 (538)
T ss_pred             cCCcccc-chHHHHHHHHHHHHhHhee-EEeecccccCHHHhcCh
Confidence                677 8899999999999998887 46779999999887443

>PRK12382 putative transporter; Provisional

Probab=99.96  E-value=1.2e-26  Score=215.35  Aligned_cols=317  Identities=13%  Similarity=0.088  Sum_probs=218.4

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHH--------h--HHHHHhhccccccc
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGY--------Y--TQLIMTGQIEKSLI   69 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~--------~--~~~~~~~r~~~~~~   69 (420)
                      +|.|..+.....+.+.++..+++++ |+++||+|||++++.+.+...++.+....        .  ++.+++.|      
T Consensus        46 lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r------  119 (392)
T PRK12382         46 LGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGR------  119 (392)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHH------
Confidence            4678888999999999999999999 99999999999999998887766543221        1  67789999      


Q ss_pred             hhHHHHHHHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhccccc
Q psy6665          70 PVFCILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIPS  145 (420)
Q Consensus        70 ~~~~~~~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~~  145 (420)
                            +++|++.+ ...+...+++.|++|+|+|++++++.+.+.++|..++|.++..+    +||..+.+..+..++. 
T Consensus       120 ------~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~-  191 (392)
T PRK12382        120 ------LILGFGES-QLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLA-  191 (392)
T ss_pred             ------HHHHHHHH-HHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH-
Confidence                  99999999 77776888999999999999999999999999998988887765    8998877665544332 


Q ss_pred             cceeeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhh
Q psy6665         146 PVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYI  225 (420)
Q Consensus       146 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (420)
                        +...++.+++           +   +        ++     +++.+.++..+   ..+....... +.    ......
T Consensus       192 --~~~~~~~~~~-----------~---~--------~~-----~~~~~~~~~~~---~~~~~~~~~~-l~----~~~~~~  234 (392)
T PRK12382        192 --WAFNGTVRKV-----------P---A--------HA-----GERPSLWSVVG---LIWKPGLGLA-LQ----GVGFAV  234 (392)
T ss_pred             --HHHHHhccCC-----------C---C--------Cc-----ccCchHHHHHH---HHHHhHHHHH-HH----HHHHhH
Confidence              1111100000           0   0        00     00001111111   1111111111 11    112334


Q ss_pred             HHHhHHHHHHhhCCcchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHHHHH
Q psy6665         226 TIFYAVQFLEDMGSRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILFYVA  294 (420)
Q Consensus       226 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~  294 (420)
                      ...+.|.++++.+.. ..+.......++.+++.++.|++.||+++|+.+..+..+           .+.........+.+
T Consensus       235 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  313 (392)
T PRK12382        235 IGTFVSLYFASKGWA-MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTG  313 (392)
T ss_pred             HHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            566777777776652 244455566777889999999999999998887765544           11111111112222


Q ss_pred             HHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhc
Q psy6665         295 ISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIF  370 (420)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  370 (420)
                      .......+...+...|.+|+++|+++.|+.+....++..++|.+.|.+.++.| +...+.+.+++.+++.+..+..
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        314 AGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG-YPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHHhh
Confidence            21222344555677888999999999999999999999999999999999999 8888888888887777766543

>KOG2532|consensus

Probab=99.96  E-value=9.5e-28  Score=221.67  Aligned_cols=335  Identities=16%  Similarity=0.163  Sum_probs=246.5

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh----HHHHHhhccccccchhHHHHH
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY----TQLIMTGQIEKSLIPVFCILF   76 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~   76 (420)
                      +.+.++-...++.++.|+++++++ |+++||+|-|+++..+.++.++++++...+    ++.+++.|            +
T Consensus        69 ~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R------------~  136 (466)
T KOG2532|consen   69 DWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLR------------F  136 (466)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHH------------H
Confidence            566778889999999999999999 999999999999999999999999999988    66789999            9


Q ss_pred             HHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh-----hhHHHHHhHhhhccccccceeee
Q psy6665          77 YVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL-----HWRTVAWLSLAYILIPSPVWLLN  151 (420)
Q Consensus        77 l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~-----~wr~~f~~~~~~~~~~~~~~l~~  151 (420)
                      ++|++.| ...+....+.++|.|++||++..++..++..+|.+++..+++.+     ||+.+|++.++.+++....|+..
T Consensus       137 lqGl~~g-~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~  215 (466)
T KOG2532|consen  137 LQGLGQG-VLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLF  215 (466)
T ss_pred             HhHHHHh-HHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            9999999 88888999999999999999999999999999999888777766     89999999999998874444432


Q ss_pred             cC-cHHHH----HHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhH
Q psy6665         152 KG-RANQA----LKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYIT  226 (420)
Q Consensus       152 ~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (420)
                      .. ++++.    +++++.+.+..            .+...+++.+.+++++++      .+.++...+..+....+.+.+
T Consensus       216 ~~d~P~~h~~is~~El~~I~~~k------------~~~~~~~~~~vP~~~i~t------s~~vwai~~~~f~~~~~~~~l  277 (466)
T KOG2532|consen  216 YSDSPSKHPNISEKELKYIEKGK------------SEAHVKKKPPVPYKAILT------SPPVWAIWISAFGGNWGFYLL  277 (466)
T ss_pred             hcCCcccCCCCCHHHHHHHHhcc------------cccccCCCCCCCHHHHHc------CHHHHHHHHHHHHHHHHHHHH
Confidence            22 22211    01111111110            000111113456777765      556777777777777789999


Q ss_pred             HHhHHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCch--------hhHh-hhccc--------------h
Q psy6665         227 IFYAVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRR--------SLTM-FSQIE--------------K  281 (420)
Q Consensus       227 ~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--------~~~~-~~~~~--------------~  281 (420)
                      ..|.|.|+++. |+ ..+.++...+..+...+..+++|.++||+.+|        +..- ++...              .
T Consensus       278 ~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~  357 (466)
T KOG2532|consen  278 LTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEH  357 (466)
T ss_pred             HHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCc
Confidence            99999999997 88 78888999999999999999999999998663        1111 11111              1


Q ss_pred             hHHHHHHHHHHHHHHhhchhhHH-HHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHh--cCcchHHHHHHHH
Q psy6665         282 SLIPVFCILFYVAISVIGMLSIP-WTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDS--VGGSAMVQWFFAL  358 (420)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~--~g~~~~~~~~~~~  358 (420)
                      .+..+.++.+.  ....+..... +.-..+. -+++.+..+|+.+....+.++++|.+.|.+...  ...|...|++.++
T Consensus       358 ~~~a~~~l~~~--~~~~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~  434 (466)
T KOG2532|consen  358 RLLAVILLTIA--IGLSGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAG  434 (466)
T ss_pred             chHHHHHHHHH--HHHcccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHH
Confidence            11222222222  2222222222 2333333 447789999999999999999999999998842  1237788888888


Q ss_pred             HHHHHHHHhhhc
Q psy6665         359 ISVISIVYVYIF  370 (420)
Q Consensus       359 ~~~~~~~~~~~~  370 (420)
                      +.+++.++..++
T Consensus       435 i~~~~~i~f~~f  446 (466)
T KOG2532|consen  435 ILIVGNIIFLFF  446 (466)
T ss_pred             HHHHhchheeEe
Confidence            888887654433

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.96  E-value=1.3e-26  Score=213.26  Aligned_cols=308  Identities=14%  Similarity=0.094  Sum_probs=213.8

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh-------HHHHHhhccccccchhHH
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY-------TQLIMTGQIEKSLIPVFC   73 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-------~~~~~~~r~~~~~~~~~~   73 (420)
                      +.+..+.....+++.++.+++.++ |+++||+|||++++.+.++.+++.++..+.       ++.+++.|          
T Consensus        30 ~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------   99 (365)
T TIGR00900        30 TGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLA----------   99 (365)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHH----------
Confidence            445667788889999999999999 999999999999999998888877766554       56778889          


Q ss_pred             HHHHHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhccccc-cce
Q psy6665          74 ILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIPS-PVW  148 (420)
Q Consensus        74 ~~~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~~-~~~  148 (420)
                        ++.|++.+ ...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+    +||+.|++.++..++.. ..+
T Consensus       100 --~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  176 (365)
T TIGR00900       100 --GILAIAQA-FFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIV  176 (365)
T ss_pred             --HHHHHHHH-HHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence              99999999 88887999999999999999999999999999999999888775    89999988776555431 111


Q ss_pred             eeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHH-
Q psy6665         149 LLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITI-  227 (420)
Q Consensus       149 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  227 (420)
                      ....++.++.          + +.+.       + .+..++.++..+..++ ++..+ .......   .... ...... 
T Consensus       177 ~~~~~~~~~~----------~-~~~~-------~-~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~---~~~~-~~~~~~~  231 (365)
T TIGR00900       177 SVRIPELAAS----------E-IQAL-------S-NAVLRDTREGIKFVLK-NPLLR-TLLLLAL---LFNL-VFAPAIV  231 (365)
T ss_pred             hcccccCCCc----------c-cccc-------c-hhHHHHHHhHHHHHHc-CcHHH-HHHHHHH---HHHH-HHHHHHH
Confidence            1111110000          0 0000       0 0000011122233332 22211 1111111   1111 122233 


Q ss_pred             HhHHHHHHh-hCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hh-HHHHHHHHHHH
Q psy6665         228 FYAVQFLED-MGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KS-LIPVFCILFYV  293 (420)
Q Consensus       228 ~~~~~~~~~-~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~-~~~~~~~~~~~  293 (420)
                      .+.|.+.++ .|. ..+.+.......++.+++.++.+++.||.+||+.+..+..+           .+ ........+..
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAI  311 (365)
T ss_pred             HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence            677888876 377 66777888888999999999999999999999887765433           21 22222222222


Q ss_pred             HHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcC
Q psy6665         294 AISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVG  347 (420)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g  347 (420)
                      +.......+...++..|.+|++.|+++.|+.+...+++..++|.+.|.+.|..|
T Consensus       312 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       312 GVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            222223356667889999999999999999999999999999999999998764

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.96  E-value=7.2e-26  Score=209.50  Aligned_cols=316  Identities=12%  Similarity=0.086  Sum_probs=215.5

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFY   77 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l   77 (420)
                      +|.+.++.....+.+.++..++.++ |+++||+|||+++..+.++.+++.+++.+.  ++.+++.|            ++
T Consensus        50 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r------------~l  117 (394)
T PRK10213         50 LGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGR------------AC  117 (394)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHH------------HH
Confidence            4667788888889999999999999 999999999999999999999999998888  99999999            99


Q ss_pred             HHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccccccee-eec
Q psy6665          78 VAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIPSPVWL-LNK  152 (420)
Q Consensus        78 ~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~~~~~l-~~~  152 (420)
                      +|++.+ ...+...+++.|++|+++|+++.++...+.++|..++|.++..+    +||+.|++.++++++.....+ ..+
T Consensus       118 ~G~~~g-~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p  196 (394)
T PRK10213        118 LGLALG-GFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLP  196 (394)
T ss_pred             HHHhhH-HHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            999999 77777999999999999999999999999999999999888776    899999988776655310000 000


Q ss_pred             CcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhH-H
Q psy6665         153 GRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYA-V  231 (420)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  231 (420)
                      ++++                         +    +++.+.+..+.++ ++     .++...+..+......+....+. |
T Consensus       197 ~~~~-------------------------~----~~~~~~~~~~~l~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~p  241 (394)
T PRK10213        197 SLPG-------------------------E----PSHQKQNTFRLLQ-RP-----GVMAGMIAIFMSFAGQFAFFTYIRP  241 (394)
T ss_pred             CCCc-------------------------c----cccchhHHHHHhc-CH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0000                         0    0000111222322 22     12222111122222233344454 6


Q ss_pred             HHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHHHHHHHhhc
Q psy6665         232 QFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILFYVAISVIG  299 (420)
Q Consensus       232 ~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~  299 (420)
                      .+.++.|+ ..+.+......+++.+++.++.+++.||.+++.........           .+........++.+.....
T Consensus       242 ~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~  321 (394)
T PRK10213        242 VYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFAL  321 (394)
T ss_pred             HHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence            66666688 66677878888899999999999999996555433322221           1111111122222211122


Q ss_pred             hhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHH
Q psy6665         300 MLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVY  366 (420)
Q Consensus       300 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  366 (420)
                      ..+...+++.+..| +.++...++.....+++..++|.+.|.+.|..| +...+...+.+.++..+.
T Consensus       322 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g-~~~~~~~~~~~~~~~~~~  386 (394)
T PRK10213        322 VPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIG-LTSPLMLSGTLMLLTALL  386 (394)
T ss_pred             hhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhhHHHHHHHHHHHHHHH
Confidence            23444456777777 446677788888889999999999999999988 666666655555444433

>TIGR00895 2A0115 benzoate transport

Probab=99.96  E-value=1.4e-26  Score=215.65  Aligned_cols=321  Identities=13%  Similarity=0.122  Sum_probs=213.7

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHHH
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFYV   78 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l~   78 (420)
                      |.+..+.....+...++..++.++ |+++||+|||+++..+.++.+++.+++.+.  ++.+++.|            ++.
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~  115 (398)
T TIGR00895        48 GLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILR------------FLA  115 (398)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHH------------HHH
Confidence            556677778888999999999999 999999999999999999999998888877  88888999            999


Q ss_pred             HHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccc-ccceeeecC
Q psy6665          79 AISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIP-SPVWLLNKG  153 (420)
Q Consensus        79 G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~-~~~~l~~~~  153 (420)
                      |++.+ ...+...+++.|++|+++|++++++...+..+|..+++.+++.+    +||..|++.++..++. ...+...++
T Consensus       116 g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  194 (398)
T TIGR00895       116 GLGLG-GLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPE  194 (398)
T ss_pred             hcccc-cchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCC
Confidence            99999 77777999999999999999999999999999999999888765    8999888775444333 111111111


Q ss_pred             c--------HHHHHHHHHHHhcchhhhhhhHHHHhhhccchhh-hhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchh
Q psy6665         154 R--------ANQALKSLKYLARNYKEVKNKEQELKKMNSTKEN-QSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIY  224 (420)
Q Consensus       154 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (420)
                      +        .++..+..++........+    +.+.++.++++ ..+...+..+  ++...+... ...+..+.......
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~  267 (398)
T TIGR00895       195 SIDFLVSKRPETVRRIVNAIAPQMQAEA----QSALPEQKATQGTKRSVFKALF--QGKTARITV-LLWLLYFMLLVGVY  267 (398)
T ss_pred             CChHHHhcCHHHHHHHHHHHHHhccccc----cccccccccccchhhHHHHHHh--cchhHHHHH-HHHHHHHHHHHHHH
Confidence            1        1111111111100000000    00000000000 0111111222  111122222 22222223333455


Q ss_pred             hHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHHH
Q psy6665         225 ITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILFY  292 (420)
Q Consensus       225 ~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~~  292 (420)
                      ....+.|.+.++.|. ..+.+.......++.+++.++.+++.||+++|+........           .+........+.
T Consensus       268 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (398)
T TIGR00895       268 FLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAI  347 (398)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence            667788877766677 66777888888999999999999999999998554333222           111112222222


Q ss_pred             HHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHH
Q psy6665         293 VAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWF  342 (420)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l  342 (420)
                      .+.......+...++..|.+|++.|+++.|+.+....++..++|.+.|++
T Consensus       348 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       348 AGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            22333334566678999999999999999999999999999999999875

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.96  E-value=1.2e-27  Score=221.16  Aligned_cols=325  Identities=13%  Similarity=0.012  Sum_probs=217.6

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFY   77 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l   77 (420)
                      +|.+..+.....+...++..++.++ |+++||+|||+++..+.++.+++.+++.++  ++.+++.|            ++
T Consensus        25 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~   92 (379)
T TIGR00881        25 IGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALW------------AL   92 (379)
T ss_pred             hCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHH------------HH
Confidence            3667788889999999999999999 999999999999999999999999999888  88999999            99


Q ss_pred             HHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHH-HHhhhh----hhHHHHHhHhhhcccc-ccceeee
Q psy6665          78 VAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVY-ALGAVL----HWRTVAWLSLAYILIP-SPVWLLN  151 (420)
Q Consensus        78 ~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~-~~~~~~----~wr~~f~~~~~~~~~~-~~~~l~~  151 (420)
                      .|++.+ ...+...+++.|++|+++|++++++.+.+..+|..+++ .++..+    +||+.|++.+++.++. ...++..
T Consensus        93 ~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (379)
T TIGR00881        93 NGIFQG-MGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLL  171 (379)
T ss_pred             HHhhcc-ccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheee
Confidence            999999 77777999999999999999999999999999999998 344433    8999998887665543 1222333


Q ss_pred             cCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchh-hhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhH
Q psy6665         152 KGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKE-NQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYA  230 (420)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (420)
                      ++++++...     ++.++..++..++. .++.+++ ++.+...+..++ ++     .++...+..+...........+.
T Consensus       172 ~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~  239 (379)
T TIGR00881       172 RDSPQSCGL-----PPAEEMPNEEPDGD-AEKKEEELTKKQIFLQYVLL-NK-----VLWYISLGYVFVYVVRTGILDWS  239 (379)
T ss_pred             CCCcccccc-----CccccCcccccccc-cccccccccchHHHHHHHHh-cc-----hHHHHHHHHHHHHHHHHHHHHHH
Confidence            322211100     00000000000000 0000000 011111222222 22     22222222222222345677788


Q ss_pred             HHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccC-chhh-Hhhhccc--------------hhHHHHHHHHHH
Q psy6665         231 VQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYG-RRSL-TMFSQIE--------------KSLIPVFCILFY  292 (420)
Q Consensus       231 ~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-~~~~-~~~~~~~--------------~~~~~~~~~~~~  292 (420)
                      |.++++. |+ +.+.+.......++.+++.++.+++.||.. +|+. .......              .+........+.
T Consensus       240 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (379)
T TIGR00881       240 PLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFA  319 (379)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH
Confidence            8888765 77 677788888889999999999999999863 3322 1111100              111111122222


Q ss_pred             HHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchH
Q psy6665         293 VAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAM  351 (420)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~  351 (420)
                      .+....+..+....+..|.+|++.|+++.|+.+....+++.++|.+.|.+.|+.| +..
T Consensus       320 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~  377 (379)
T TIGR00881       320 LGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFG-WAG  377 (379)
T ss_pred             HHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc-ccc
Confidence            2222333444555788999999999999999999999999999999999999988 543

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.96  E-value=6.2e-26  Score=209.62  Aligned_cols=317  Identities=10%  Similarity=0.013  Sum_probs=219.5

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFY   77 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l   77 (420)
                      +|.+..+.....+.+.++..+++++ |+++||+|||+++..+.++.+++.++++++  ++.+++.|            ++
T Consensus        36 ~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------~l  103 (381)
T PRK03633         36 EHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWR------------FV  103 (381)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH------------HH
Confidence            3667788999999999999999999 999999999999999999999999988887  88999999            99


Q ss_pred             HHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhhh---hHHHHHhHhhhccccccceeeecCc
Q psy6665          78 VAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVLH---WRTVAWLSLAYILIPSPVWLLNKGR  154 (420)
Q Consensus        78 ~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~---wr~~f~~~~~~~~~~~~~~l~~~~~  154 (420)
                      +|++.+ ...+.....+.+..++++|++++++.+.+.++|..+++.++..+.   ++...+..+.......+..+. +.+
T Consensus       104 ~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  181 (381)
T PRK03633        104 AGIGCA-MIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVTGLVLAAILPLLFT-RIL  181 (381)
T ss_pred             HHHHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHh-ccc
Confidence            999999 766667777889999999999999999999999999999988761   111222222111111001100 000


Q ss_pred             HHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhHHHHH
Q psy6665         155 ANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFL  234 (420)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (420)
                      ++              + +        +   +  +++.+..+.++ ++..+. ....+..    ..........+.|.+.
T Consensus       182 ~~--------------~-~--------~---~--~~~~~~~~~~~-~~~~~~-~~~~~~~----~~~~~~~~~~~lp~~~  227 (381)
T PRK03633        182 NQ--------------Q-A--------E---N--HDSTSIWPMLK-LRQARL-GVNGCII----SGIVLGSLYGLMPLYL  227 (381)
T ss_pred             CC--------------C-C--------C---C--CCCCCHHHHHH-hcchHH-HHHHHHH----HHHHHHHHHHHHHHHH
Confidence            00              0 0        0   0  00112233333 332221 1111111    1112334556788888


Q ss_pred             HhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc--------hhHHHHHHHHHHHHHHhhchhhHHH
Q psy6665         235 EDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE--------KSLIPVFCILFYVAISVIGMLSIPW  305 (420)
Q Consensus       235 ~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  305 (420)
                      ++.|. ....+.......+..+++++..+++.||+++|+.+..+...        .............+.......|...
T Consensus       228 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~  307 (381)
T PRK03633        228 NHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAMLSQAAMAPALFILGAAGFTLYPVAM  307 (381)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHH
Confidence            87777 56677777888899999999999999999999887655444        1111111111222222334467777


Q ss_pred             HHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHH
Q psy6665         306 TMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVY  366 (420)
Q Consensus       306 ~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  366 (420)
                      +...|..|+++++...+..+...++|+.++|.+.|++.|+.| +...|.+.+.+.++..+.
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~  367 (381)
T PRK03633        308 AWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS-DNLLFIMIASVSFIYLLM  367 (381)
T ss_pred             HHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHH
Confidence            888899998888888888888899999999999999999998 778888777776655443

>TIGR00897 2A0118 polyol permease family

Probab=99.96  E-value=4.4e-26  Score=211.94  Aligned_cols=324  Identities=14%  Similarity=0.097  Sum_probs=213.6

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHH---Hh---HHHHHhhccccccchhHHH
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSG---YY---TQLIMTGQIEKSLIPVFCI   74 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~---~~~~~~~r~~~~~~~~~~~   74 (420)
                      |.+.++.....+.+.++..++.++ |+++||+|||+++..+..+.+++++++.   +.   ++.+++.|           
T Consensus        44 g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------  112 (402)
T TIGR00897        44 GLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFY-----------  112 (402)
T ss_pred             CCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHH-----------
Confidence            567788889999999999999999 9999999999999999999998877653   21   66777889           


Q ss_pred             HHHHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHH-HHHHHHhhhh----hhHHHHHhHhhhcccc-ccce
Q psy6665          75 LFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGM-VIVYALGAVL----HWRTVAWLSLAYILIP-SPVW  148 (420)
Q Consensus        75 ~~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~-~~~~~~~~~~----~wr~~f~~~~~~~~~~-~~~~  148 (420)
                       ++.|++.+ ...+.....+.|++|+++|++++++.+.+.++|. .+++.+++.+    ||+..++.......+. ...+
T Consensus       113 -~i~G~g~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  190 (402)
T TIGR00897       113 -GIRGLGYP-LFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIAL  190 (402)
T ss_pred             -HHHHcchH-HHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH
Confidence             99999988 6666577889999999999999999999999996 5788776543    6433332222111111 0011


Q ss_pred             eeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHH
Q psy6665         149 LLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIF  228 (420)
Q Consensus       149 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (420)
                      +..+++.++.++                     ++..+.++.++..++.++ ++     .++......+......+...+
T Consensus       191 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~  243 (402)
T TIGR00897       191 FSNKDIFTPQHM---------------------QTREKFSELGKAATILFT-NP-----NVLLGGMVRIINTIGLFGFAV  243 (402)
T ss_pred             hccCCCCCcccc---------------------cCCcchhhHHHHHHHHHc-Ch-----hHHHHHHHHHHHHHHHHHHHH
Confidence            112221110000                     000000000112223332 22     122222222233334566788


Q ss_pred             hHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhh-hccc--------h--------hHHHHHHHH
Q psy6665         229 YAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMF-SQIE--------K--------SLIPVFCIL  290 (420)
Q Consensus       229 ~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~-~~~~--------~--------~~~~~~~~~  290 (420)
                      |.|.+.++.|+ ..+.+.......++..++.+..|+++||++||+.... +...        .        +........
T Consensus       244 ~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~  323 (402)
T TIGR00897       244 FLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIA  323 (402)
T ss_pred             HHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHH
Confidence            99999887788 6666777777889999999999999999998876531 1111        0        111111122


Q ss_pred             HHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhh
Q psy6665         291 FYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVY  368 (420)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  368 (420)
                      +..+....+..+. .....|..| ++|+++.|+.+....+++.++|.+.|.+.+..| +...+++.+++.+++.+...
T Consensus       324 ~~~G~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g-~~~~~~~~a~~~~i~~~~~~  398 (402)
T TIGR00897       324 IALGIFLAGYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG-AIGVVWIFAALYVVSAFLTA  398 (402)
T ss_pred             HHHHHHHHHHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHHHH
Confidence            2222222223333 355567655 689999999999999999999999999999998 88888888888777776654

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.96  E-value=1.3e-26  Score=215.62  Aligned_cols=303  Identities=16%  Similarity=0.169  Sum_probs=203.1

Q ss_pred             HHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HH--------HHHhhccccccchhHHHHHHHHHH
Q psy6665          13 LVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQ--------LIMTGQIEKSLIPVFCILFYVAIS   81 (420)
Q Consensus        13 ~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~--------~~~~~r~~~~~~~~~~~~~l~G~~   81 (420)
                      +..+++..+++++ |+++||+|||++++.+.++..++.++++++  ++        .+++.|            +++|++
T Consensus        42 ~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r------------~l~G~~  109 (394)
T TIGR00883        42 AAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLAR------------LIQGFS  109 (394)
T ss_pred             HHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHH------------HHHHhh
Confidence            3445555678899 999999999999999999999999998887  33        478899            999999


Q ss_pred             hhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhh------------hhhHHHHHhHhhhcccccccee
Q psy6665          82 VIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAV------------LHWRTVAWLSLAYILIPSPVWL  149 (420)
Q Consensus        82 ~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~------------~~wr~~f~~~~~~~~~~~~~~l  149 (420)
                      .+ ...+....++.|++|+++|++..++.+.+..+|..+++.++..            .+||+.|++.+++.++....+.
T Consensus       110 ~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  188 (394)
T TIGR00883       110 LG-GEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRR  188 (394)
T ss_pred             cc-ccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence            99 6666689999999999999999999999999999998876532            3799999888776655411111


Q ss_pred             eecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHh
Q psy6665         150 LNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFY  229 (420)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (420)
                      ..++++++..+                     +  +++++.+.+.++.++ ++  +++..... ...+......+....+
T Consensus       189 ~~~~~~~~~~~---------------------~--~~~~~~~~~~~~~~~-~~--~~~~~~~~-~~~~~~~~~~~~~~~~  241 (394)
T TIGR00883       189 NLEETPVFEKA---------------------Q--EKHKKKRGPIRETLT-KH--RKPFLLGL-GLVIATTTTFYLITTY  241 (394)
T ss_pred             hcCCChhHHHH---------------------H--hccccccCCHHHHHH-hc--hHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            11111110000                     0  000011122333333 11  11122222 2222333335567778


Q ss_pred             HHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc--------------hhH-HHHHHHHHH
Q psy6665         230 AVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE--------------KSL-IPVFCILFY  292 (420)
Q Consensus       230 ~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~--------------~~~-~~~~~~~~~  292 (420)
                      .|.+.++. |. ..+.+.......+...++.++.++++||++||+.+.....+              ... .........
T Consensus       242 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (394)
T TIGR00883       242 LPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLG  321 (394)
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            89988654 77 66677778888899999999999999999999876533222              011 111111222


Q ss_pred             HHHHhhchhhHHHHHhcccCChhhhhhhHHHHH-HHHHHHHHHHHHHhHHHHHhcCcchHHHHH
Q psy6665         293 VAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTF-CLAHILMFFALQYYPWFKDSVGGSAMVQWF  355 (420)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~-~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~  355 (420)
                      .........+...++..|.+|++.|+++.++.. ....++..++|.+.|.+.++.|.+...++.
T Consensus       322 ~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~  385 (394)
T TIGR00883       322 LALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYY  385 (394)
T ss_pred             HHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHH
Confidence            222222345566789999999999999999854 445678889999999999998833333333

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.95  E-value=7.4e-27  Score=222.51  Aligned_cols=325  Identities=13%  Similarity=0.081  Sum_probs=217.6

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFY   77 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l   77 (420)
                      +|.+.++..+..+.+.++..++.++ |+++||+|||++++.+.++..+++++++++  ++.++++|            ++
T Consensus        36 l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r------------~l  103 (495)
T PRK14995         36 LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATR------------AL  103 (495)
T ss_pred             hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH------------HH
Confidence            4667788889999999999999999 999999999999999999999999999998  99999999            99


Q ss_pred             HHHHhhcccchhhhhhhhhcc-CccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccc-ccceeee
Q psy6665          78 VAISVIAMGPSPAIVYITEVA-RPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIP-SPVWLLN  151 (420)
Q Consensus        78 ~G~~~~~~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~-~~~~l~~  151 (420)
                      +|+|.+ ...+.....+.+++ |+++|++++++......+|..++|.+++.+    +||+.|++...++++. ...++..
T Consensus       104 ~G~g~~-~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l  182 (495)
T PRK14995        104 LAIGAA-MIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYV  182 (495)
T ss_pred             HHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999 66665677776765 679999999999999999999999998877    8999999887665554 1111111


Q ss_pred             cCcHHHHHHHHH----------------HHhcchhhh-hhhHHHH-------hh-hccchhhhhhhhH--HHHHhhcccc
Q psy6665         152 KGRANQALKSLK----------------YLARNYKEV-KNKEQEL-------KK-MNSTKENQSLSAR--LIKMVTMATG  204 (420)
Q Consensus       152 ~~~~~~~~~~~~----------------~~~~~~~~~-~~~~~~~-------~~-~~~~~~~~~~~~~--~~~~~~~~~~  204 (420)
                      +++.++.++..+                ...+..... .......       .. .-...+.+.+.+.  .+.++ +   
T Consensus       183 ~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~-~---  258 (495)
T PRK14995        183 PRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFT-H---  258 (495)
T ss_pred             CCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhC-C---
Confidence            111110000000                000000000 0000000       00 0000000011111  12222 1   


Q ss_pred             chHHHHHHHHHHHHHhcchhhHHHhHHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc--
Q psy6665         205 IKPLLVITVLFALQQLAGIYITIFYAVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE--  280 (420)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~--  280 (420)
                        +.+.......+......+...++.|.+++.. |+ +.+++.......+...++.++.|++.||+|+|+.+..+..+  
T Consensus       259 --~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~  336 (495)
T PRK14995        259 --RIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSA  336 (495)
T ss_pred             --cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence              2222222222223333556677889998876 88 88889999999999999999999999999999887665543  


Q ss_pred             ------------hhHHHHHHHHHHHHHHhhch-hhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHh
Q psy6665         281 ------------KSLIPVFCILFYVAISVIGM-LSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDS  345 (420)
Q Consensus       281 ------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~  345 (420)
                                  .+....... ....+.+.+. .+.......+..|++.++.+.++.+....+|+.+++.+.|.+.++
T Consensus       337 ~~~~~l~~~~~~~~~~~~~~~-~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        337 LSFYGLAMTDFSTQQWQAWGL-MALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             HHHHHHHHhcCCCchHHHHHH-HHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        111112211 2222222222 334456677888999999999999999999999999999988764

>KOG0253|consensus

Probab=99.95  E-value=1.5e-26  Score=197.08  Aligned_cols=350  Identities=17%  Similarity=0.188  Sum_probs=250.0

Q ss_pred             hHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHHHHHHhh
Q psy6665           7 VYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFYVAISVI   83 (420)
Q Consensus         7 ~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l~G~~~~   83 (420)
                      +........+.|..+++.. |.++|++|||+.+.+.....++...+.+.+  +..+++.|            .+.|+|.|
T Consensus       114 q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~------------~l~~~g~g  181 (528)
T KOG0253|consen  114 QAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFR------------ALWGFGVG  181 (528)
T ss_pred             hhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHH------------HHHhccCC
Confidence            3445556678999999999 999999999999999999999999888888  99999999            99999999


Q ss_pred             cccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccc---------ccceee
Q psy6665          84 AMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIP---------SPVWLL  150 (420)
Q Consensus        84 ~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~---------~~~~l~  150 (420)
                       ..+. ..++-.|..|..+|...+-.. ..+.+|......+....    ||||..+..+.+..+.         +|+|.+
T Consensus       182 -g~pv-~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~  258 (528)
T KOG0253|consen  182 -GLPV-DSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYL  258 (528)
T ss_pred             -CccH-hHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhh
Confidence             4444 778889999999998877766 88888888887776654    9999888777655444         999999


Q ss_pred             ecCcHHHHHHHHHHHhcchhhh------------hhhHHHHhhhccch--hhhhhhhHHHHHhhccccchHHHHHHHHHH
Q psy6665         151 NKGRANQALKSLKYLARNYKEV------------KNKEQELKKMNSTK--ENQSLSARLIKMVTMATGIKPLLVITVLFA  216 (420)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (420)
                      .+++++++.+.++++.+.+...            ++++++.+.++.+.  .++.+.+..+++  .+++++..+.....++
T Consensus       259 ~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLl--sp~lrkttlllw~iwf  336 (528)
T KOG0253|consen  259 AKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLL--SPKLRKTTLLLWRIWF  336 (528)
T ss_pred             hcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhc--ChHHHHHHHHHHHHHH
Confidence            9999999988888876533221            11111111111111  111122333333  5566666665555554


Q ss_pred             HHHhcchhhHHHhHHHHHHhhC--------------------C-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHh
Q psy6665         217 LQQLAGIYITIFYAVQFLEDMG--------------------S-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTM  275 (420)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~g--------------------~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~  275 (420)
                      ...+. ++.........++...                    . ...-+.-.....+.++.|.++.+.+.||+|||+.+.
T Consensus       337 gnafs-yyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMa  415 (528)
T KOG0253|consen  337 GNAFS-YYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMA  415 (528)
T ss_pred             hhHHH-HHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHH
Confidence            43332 3444434444443321                    1 122334556678899999999999999999999988


Q ss_pred             hhccc------------hhHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHH
Q psy6665         276 FSQIE------------KSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFK  343 (420)
Q Consensus       276 ~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~  343 (420)
                      .++++            .........+..-.+.+ +...+.+.|..|++|+..|+++.|.++...++|+++.|++. . .
T Consensus       416 l~l~~f~iflfll~~c~~rn~~tvllf~arafis-g~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~-~  492 (528)
T KOG0253|consen  416 LSLILFGIFLFLLTTCKTRNAYTVLLFTARAFIS-GAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-M-R  492 (528)
T ss_pred             HHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHh-chheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-H-H
Confidence            87766            22222333333333333 44456689999999999999999999999999999999998 3 3


Q ss_pred             HhcCcchHHHHHHHHHHHHHHHHhhhccccCCCCC
Q psy6665         344 DSVGGSAMVQWFFALISVISIVYVYIFLPETHGRT  378 (420)
Q Consensus       344 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (420)
                      .... ...+..+++.+++++.+.+.++--|+++|.
T Consensus       493 ~e~s-~sl~i~vy~~~~ilagIavcffPiEtkGR~  526 (528)
T KOG0253|consen  493 AELS-TSLPIFVYGALFILAGIAVCFFPIETKGRS  526 (528)
T ss_pred             hccc-eeehHHHHHHHHHHHHHHheeeeeccCCCC
Confidence            3333 578888999999999998888878888875

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.95  E-value=1.6e-25  Score=208.83  Aligned_cols=304  Identities=12%  Similarity=-0.016  Sum_probs=203.9

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFY   77 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l   77 (420)
                      +|.+..+.....+.+.++..++.++ |+++||+|||+++..+..+.+++.+.+.++  ++.+++.|            ++
T Consensus        43 ~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~------------~l  110 (406)
T PRK15402         43 FNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLR------------FL  110 (406)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHH------------HH
Confidence            3566777788889999999999999 999999999999999999999999888877  88889999            99


Q ss_pred             HHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccc-ccceeeec
Q psy6665          78 VAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIP-SPVWLLNK  152 (420)
Q Consensus        78 ~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~-~~~~l~~~  152 (420)
                      +|++.+ ...+....++.|++|+++|.+..++......+|..++|.++..+    +||+.|++.++..++. ...+...+
T Consensus       111 ~G~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  189 (406)
T PRK15402        111 QGIGLC-FIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMP  189 (406)
T ss_pred             HHhHhh-hHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999 76667889999999999999999998888888888888877665    8999999887776654 11111111


Q ss_pred             CcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhHHH
Q psy6665         153 GRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQ  232 (420)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (420)
                      ++.++.              +        ++ .+.++..++.++.++ ++..     +......+...........+.|.
T Consensus       190 ~~~~~~--------------~--------~~-~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~p~  240 (406)
T PRK15402        190 ETAGRV--------------G--------EK-LSLKELGRDYKLVLK-NRRF-----VAGALALGLVSLPLLAWIALSPV  240 (406)
T ss_pred             CCCccc--------------c--------cc-ccHHHHHHHHHHHHc-CcHH-----HHHHHHHHHHHHHHHHHHHHhHH
Confidence            111000              0        00 000001122233332 2221     11111111111123344556677


Q ss_pred             HHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------h----hHHHHHHHHHHHHH
Q psy6665         233 FLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------K----SLIPVFCILFYVAI  295 (420)
Q Consensus       233 ~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~----~~~~~~~~~~~~~~  295 (420)
                      ++.+. |. +.+.+.......++.+++.++.+++.||+++|+.+..+...           .    .............+
T Consensus       241 ~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (406)
T PRK15402        241 ILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYA  320 (406)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHH
Confidence            76554 77 55566666666778889999999999999999887665443           0    00111111112222


Q ss_pred             Hhhch-hhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcC
Q psy6665         296 SVIGM-LSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVG  347 (420)
Q Consensus       296 ~~~~~-~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g  347 (420)
                      .+.+. .+......... +++++|++.++.+....++..+++.+.+.+.+..+
T Consensus       321 ~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~  372 (406)
T PRK15402        321 FGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGG  372 (406)
T ss_pred             HHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence            22222 23333333333 44789999999999999999999999999988877

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.95  E-value=1.5e-25  Score=205.61  Aligned_cols=321  Identities=13%  Similarity=0.153  Sum_probs=222.1

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHH------h-HHHHHhhccccccchhH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGY------Y-TQLIMTGQIEKSLIPVF   72 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~------~-~~~~~~~r~~~~~~~~~   72 (420)
                      +|.+.++..+..++..+++.++.++ |++.||+|.|+++.++.++.++.++.+++      . ++.+++.|         
T Consensus        65 ~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r---------  135 (462)
T PRK15034         65 FNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIA---------  135 (462)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHH---------
Confidence            4678888999999999999999899 99999999999999999999999998886      3 88999999         


Q ss_pred             HHHHHHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhh----------------------hhh
Q psy6665          73 CILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAV----------------------LHW  130 (420)
Q Consensus        73 ~~~~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~----------------------~~w  130 (420)
                         ++.|++ + ...+.....+++|+|+++||+++++.....++|..+++.+...                      .+|
T Consensus       136 ---~l~Gig-g-~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~  210 (462)
T PRK15034        136 ---LLCGFA-G-ANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSL  210 (462)
T ss_pred             ---HHHHHH-H-HhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHH
Confidence               999998 4 3445589999999999999999999976666666554443322                      137


Q ss_pred             HHHHHhHhhhcccc-ccceeeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHH
Q psy6665         131 RTVAWLSLAYILIP-SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLL  209 (420)
Q Consensus       131 r~~f~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (420)
                      |..+++..++.++. ...|+..++.++                              ++....+..+.+| +     +..
T Consensus       211 ~~~~~~~~~~~iv~~i~~~~~~~~~~~------------------------------~~~~~~~~~~vlk-~-----~~~  254 (462)
T PRK15034        211 ANAAWIWVPLLAIATIAAWSGMNDIAS------------------------------SRASIADQLPVLQ-R-----LHL  254 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCccc------------------------------cccCHHHHHHHhC-C-----Cch
Confidence            77666666655443 112222111110                              0000111222322 2     223


Q ss_pred             HHHHHHHHHHhcchhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc--------
Q psy6665         210 VITVLFALQQLAGIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE--------  280 (420)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~--------  280 (420)
                      +...+..+..+.++..+.++.|.+.++ .+ .........+..+...+.++++|+++||+|+++++..+...        
T Consensus       255 Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~  333 (462)
T PRK15034        255 WLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALL  333 (462)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence            333333344444566678899999877 44 23333334455688889999999999999999988776653        


Q ss_pred             ----h----hHHHHHHHHHHHHHHhhch-hhHHHHHhcccCCh---------------------hhhhhhHHHHHHHHHH
Q psy6665         281 ----K----SLIPVFCILFYVAISVIGM-LSIPWTMTAEIFPL---------------------EIRGIAQGLTFCLAHI  330 (420)
Q Consensus       281 ----~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~---------------------~~r~~~~g~~~~~~~~  330 (420)
                          .    .........++..+...|. ....+-++.+++|+                     ++-|.+.|+....+.+
T Consensus       334 ~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~  413 (462)
T PRK15034        334 FLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAV  413 (462)
T ss_pred             HHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHc
Confidence                0    1112222222222223333 22334677777774                     1568899999999999


Q ss_pred             HHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhccc
Q psy6665         331 LMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFLP  372 (420)
Q Consensus       331 ~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  372 (420)
                      |+++.|.+.|...+..|++...++.+.+..+++.++.+..+-
T Consensus       414 Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~  455 (462)
T PRK15034        414 GGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYG  455 (462)
T ss_pred             ccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999998888899998888888888776553

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.95  E-value=2.1e-25  Score=204.04  Aligned_cols=299  Identities=21%  Similarity=0.235  Sum_probs=240.0

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHHH
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFYV   78 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l~   78 (420)
                      |.+..+.....+...++..++.++ |+++||+|||+.+..+.++..++.+.+.+.  ++.+++.|            ++.
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~l~   97 (352)
T cd06174          30 GLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGR------------FLL   97 (352)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHH------------HHH
Confidence            456677888889999999999999 999999999999999999999999998887  88899999            999


Q ss_pred             HHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhccccccceeeecCc
Q psy6665          79 AISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIPSPVWLLNKGR  154 (420)
Q Consensus        79 G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~~~~~l~~~~~  154 (420)
                      |++.+ ...+...+++.|++|+|+|++.+++......+|..+++.++..+    +||+.+++.++..++.......    
T Consensus        98 g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  172 (352)
T cd06174          98 GLGGG-ALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLF----  172 (352)
T ss_pred             Hcccc-cccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----
Confidence            99999 77787999999999999999999999999999999999888876    6999999888776664000000    


Q ss_pred             HHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhHHHHH
Q psy6665         155 ANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFL  234 (420)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (420)
                                                                    .+    +..+......+...........+.|.+.
T Consensus       173 ----------------------------------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (352)
T cd06174         173 ----------------------------------------------LL----RLLLLLALAFFLLSFGYYGLLTYLPLYL  202 (352)
T ss_pred             ----------------------------------------------HH----HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence                                                          00    1122222333333444667788889998


Q ss_pred             Hhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchh-hHhhhccc-----------hhHHHHHHHHHHHHHHhhch
Q psy6665         235 EDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRS-LTMFSQIE-----------KSLIPVFCILFYVAISVIGM  300 (420)
Q Consensus       235 ~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~  300 (420)
                      ++. |. ..+.+.......++..++.++.+++.||++||+ .+..+..+           .+..................
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~  282 (352)
T cd06174         203 QEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFA  282 (352)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcc
Confidence            886 77 777888889999999999999999999999998 77666554           22223333333333444445


Q ss_pred             hhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhh
Q psy6665         301 LSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVY  368 (420)
Q Consensus       301 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  368 (420)
                      .+...++..|..|+++|++..|+.+....++..++|.+.+.+.+..+ +...+.+.+++.+++.+..+
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~-~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         283 FPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG-YGGVFLILAALALLAALLLL  349 (352)
T ss_pred             chhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-cchHHHHHHHHHHHHHHHhe
Confidence            67778999999999999999999999999999999999999999888 88888888888887776553

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.95  E-value=1.2e-25  Score=210.14  Aligned_cols=318  Identities=13%  Similarity=0.076  Sum_probs=215.3

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHHHHHHhhcc
Q psy6665           9 LATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFYVAISVIAM   85 (420)
Q Consensus         9 ~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l~G~~~~~~   85 (420)
                      ....+++.++..++.++ |+++||+|||+++..+.++.+++.+++.+.  ++.+++.|            ++.|++.+ .
T Consensus        57 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~g~~~~-~  123 (408)
T PRK09874         57 GLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILR------------ALLGLLGG-F  123 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH------------HHHHHhhh-h
Confidence            56677888999999999 999999999999999999999998888777  88889999            99999866 6


Q ss_pred             cchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccc-ccceeeecCcHHHHHH
Q psy6665          86 GPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIP-SPVWLLNKGRANQALK  160 (420)
Q Consensus        86 ~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~-~~~~l~~~~~~~~~~~  160 (420)
                      .. ....++.|++|+++|+++.++...+..+|..+++.+++.+    +||+.|++.+++.++. ...++..+++.++.+ 
T Consensus       124 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  201 (408)
T PRK09874        124 VP-NANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVS-  201 (408)
T ss_pred             HH-hHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCccccc-
Confidence            54 4778899999999999999999999999999998888765    8999998888766554 111111111110000 


Q ss_pred             HHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhHHHHHHhh-CC
Q psy6665         161 SLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDM-GS  239 (420)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~  239 (420)
                                  +        +    ++.+..+..+.++ +++.............    ........+.+.|..+. +.
T Consensus       202 ------------~--------~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  252 (408)
T PRK09874        202 ------------K--------K----EMLHMREVVTSLK-NPKLVLSLFVTTLIIQ----VATGSIAPILTLYVRELAGN  252 (408)
T ss_pred             ------------c--------h----hhhHHHHHHHhCc-CCchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcc
Confidence                        0        0    0000000111111 2222111111111111    11233445566666654 22


Q ss_pred             cch----HHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHHHHHHHhhchhhHH
Q psy6665         240 RMN----VYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILFYVAISVIGMLSIP  304 (420)
Q Consensus       240 ~~~----~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~  304 (420)
                      ..+    .+......+++.+++.+..|++.||++||+.+..+...           .+........+..+.......+..
T Consensus       253 ~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  332 (408)
T PRK09874        253 VSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAV  332 (408)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHH
Confidence            222    23444556677888899999999999999887766554           111222222222222222334555


Q ss_pred             HHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhcc
Q psy6665         305 WTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFL  371 (420)
Q Consensus       305 ~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  371 (420)
                      .+...+..|++.+|+.+++.+....+|..++|.+.|.+.+..| +...|.+.+++.+++.+..++..
T Consensus       333 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~  398 (408)
T PRK09874        333 QTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG-FRAVFLVTAGVVLFNAVYSWNSL  398 (408)
T ss_pred             HHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHHHH
Confidence            5777788898999999999999999999999999999999988 88899988888888777665433

>PRK10504 putative transporter; Provisional

Probab=99.95  E-value=2.4e-25  Score=211.79  Aligned_cols=325  Identities=13%  Similarity=0.075  Sum_probs=213.7

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHHH
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFYV   78 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l~   78 (420)
                      |.+..+.....+.+.++..++.++ |+++||+|||++++.+.++.+++.+++.++  ++.+++.|            +++
T Consensus        41 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------~l~  108 (471)
T PRK10504         41 GESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLAR------------VLQ  108 (471)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH------------HHH
Confidence            566677777888899999999999 999999999999999999999999888877  88889999            999


Q ss_pred             HHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccc-------ccc
Q psy6665          79 AISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIP-------SPV  147 (420)
Q Consensus        79 G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~-------~~~  147 (420)
                      |++.+ ...+...+++.|++|+++|+++.++.....++|..++|.+++.+    +||+.|++......+.       .|.
T Consensus       109 g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~  187 (471)
T PRK10504        109 GVGGA-MMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPN  187 (471)
T ss_pred             HhhhH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999 77777899999999999999999999999999999998888765    8999999876654443       111


Q ss_pred             eeeecCcHHHHHHHHHH---------HhcchhhhhhhHHHH-------------hhhccchhhhhhhhHHHHHhhccccc
Q psy6665         148 WLLNKGRANQALKSLKY---------LARNYKEVKNKEQEL-------------KKMNSTKENQSLSARLIKMVTMATGI  205 (420)
Q Consensus       148 ~l~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (420)
                      ....+.+.+........         ..+.+..........             ..++. +.+++..+. +.++ ++.++
T Consensus       188 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~l~~-~~~~~  264 (471)
T PRK10504        188 YTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHAR-NNNRALFSL-KLFR-TRTFS  264 (471)
T ss_pred             ccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHh-cCCCCccCH-HHhc-ccchH
Confidence            10011111111000000         000000000000000             00000 000001111 2222 22222


Q ss_pred             hHHHHHHHHHHHHHhcchhhHHHhHHHHHHh-hCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc---
Q psy6665         206 KPLLVITVLFALQQLAGIYITIFYAVQFLED-MGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE---  280 (420)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~---  280 (420)
                      .     .....+...........+.|.|++. .|. +.+.+.......+..+++.++.+++.||++||+.+..+..+   
T Consensus       265 ~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~  339 (471)
T PRK10504        265 L-----GLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLAL  339 (471)
T ss_pred             H-----HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence            1     1121222222344556678888875 477 66777777777888888889999999999999988766554   


Q ss_pred             ----------hhHHHHH-HHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcC
Q psy6665         281 ----------KSLIPVF-CILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVG  347 (420)
Q Consensus       281 ----------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g  347 (420)
                                ..+.... ...+..+.......+....+..+..|++.++.++|+.++...+|..+++.+.|.+.+..|
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g  417 (471)
T PRK10504        340 VSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFG  417 (471)
T ss_pred             HHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                      1111111 111121111112234455777889999999999999999999999999999999988776

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.95  E-value=7.4e-26  Score=207.18  Aligned_cols=299  Identities=19%  Similarity=0.210  Sum_probs=209.7

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFY   77 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l   77 (420)
                      +|.+..+.....+.+.++..++.++ |+++||+|||+++..+.++.+++.++..++  ++.+++.|            ++
T Consensus        27 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~l   94 (352)
T PF07690_consen   27 LGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIAR------------FL   94 (352)
T ss_dssp             STTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH------------HH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhc------------cc
Confidence            3567788889999999999999999 999999999999999999999997776664  66999999            99


Q ss_pred             HHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhccccccc--eeee
Q psy6665          78 VAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIPSPV--WLLN  151 (420)
Q Consensus        78 ~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~~~~--~l~~  151 (420)
                      .|++.+ ...+...+++.|++|+++|++++++.....++|..+++.+++.+    +||+.|++.+++.++....  ++..
T Consensus        95 ~g~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~  173 (352)
T PF07690_consen   95 LGIGSG-FFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLP  173 (352)
T ss_dssp             HHHHHH-HHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC-
T ss_pred             cccccc-cccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhh
Confidence            999999 77777999999999999999999999999999999999998877    8999999998888776221  2221


Q ss_pred             cCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhh-HHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhH
Q psy6665         152 KGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSA-RLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYA  230 (420)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (420)
                      +++.++..           +.+.       ++.++++++..+ ++..++ ++..+ ..+....+.    .........+.
T Consensus       174 ~~~~~~~~-----------~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~----~~~~~~~~~~~  229 (352)
T PF07690_consen  174 EPPPPRER-----------ESPK-------ESESKKPKPLKPGFKSLFK-NPVLW-ILLIAFFLF----FFVFSGFSFFL  229 (352)
T ss_dssp             --STTTT-------------SST-------TTT--HHHCCCH-CTHHHH-HHCCH-HHHHHHHHH----HHHHHHHHHHH
T ss_pred             hccccccc-----------cccc-------ccccccccccccccccccc-cchhh-hhhhhhhHH----HHHHHHhhccc
Confidence            11111100           0000       000001111111 233332 22222 122222222    12245578888


Q ss_pred             HHHHHhh-CCc--chHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-------------h-hHHHHHHHHHHH
Q psy6665         231 VQFLEDM-GSR--MNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-------------K-SLIPVFCILFYV  293 (420)
Q Consensus       231 ~~~~~~~-g~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-------------~-~~~~~~~~~~~~  293 (420)
                      |.|+.+. |.+  .+.+.......+...++.++.+++.||+++|+........             . +.........+.
T Consensus       230 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (352)
T PF07690_consen  230 PLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLI  309 (352)
T ss_dssp             HHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHH
T ss_pred             chhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            8885443 664  5666678888899999999999999999986655444333             1 122222223333


Q ss_pred             HHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHH
Q psy6665         294 AISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFAL  336 (420)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~  336 (420)
                      +.......+....+..|..|++++|++.|+.+...++++.++|
T Consensus       310 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  310 GFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            3333334677779999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.95  E-value=2.5e-26  Score=219.65  Aligned_cols=326  Identities=12%  Similarity=0.103  Sum_probs=218.5

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFY   77 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l   77 (420)
                      +|.+..+..+..+.+.++..++.++ |+++||+|||++++.+.++..++.++++++  ++.+++.|            ++
T Consensus        32 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------~~   99 (485)
T TIGR00711        32 LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFR------------VI   99 (485)
T ss_pred             cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHH------------HH
Confidence            3566777888999999999999999 999999999999999999999999999888  88999999            99


Q ss_pred             HHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccc-ccceeeec
Q psy6665          78 VAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIP-SPVWLLNK  152 (420)
Q Consensus        78 ~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~-~~~~l~~~  152 (420)
                      +|++.+ ...+...+++.|++|+++|+++.+++..+..+|..+++.+++.+    +||+.|++.+.++++. ...++..+
T Consensus       100 ~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~  178 (485)
T TIGR00711       100 QGFGGG-PLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILP  178 (485)
T ss_pred             HHhhhh-hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcC
Confidence            999999 77777999999999999999999999999999999999888776    8999998877665544 11111111


Q ss_pred             CcHHHHHHHHHH----------------HhcchhhhhhhHHHHh-h---------hccchhhhhhhh--HHHHHhhcccc
Q psy6665         153 GRANQALKSLKY----------------LARNYKEVKNKEQELK-K---------MNSTKENQSLSA--RLIKMVTMATG  204 (420)
Q Consensus       153 ~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~--~~~~~~~~~~~  204 (420)
                      ++.++..+..+.                ..+.+........+.. .         ....++.+++++  ..+.++ ++.+
T Consensus       179 ~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  257 (485)
T TIGR00711       179 RDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVDLRLFK-YRNF  257 (485)
T ss_pred             CccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHc-CCCh
Confidence            111110000000                0000000000000000 0         000000000111  112222 2222


Q ss_pred             chHHHHHHHHHHHHHhcchhhHHHhHHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc--
Q psy6665         205 IKPLLVITVLFALQQLAGIYITIFYAVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE--  280 (420)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~--  280 (420)
                      +..     ....+......+...++.|.++++. |+ +.+.+.......++.+++.++.|++.||++||+.+..+..+  
T Consensus       258 ~~~-----~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~  332 (485)
T TIGR00711       258 TIG-----CVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYA  332 (485)
T ss_pred             HHH-----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Confidence            211     2222222223456677889999875 77 77888888888999999999999999999999887766544  


Q ss_pred             ------h-------hHHHHHHHHHHHHHHhhch-hhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhc
Q psy6665         281 ------K-------SLIPVFCILFYVAISVIGM-LSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSV  346 (420)
Q Consensus       281 ------~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~  346 (420)
                            .       +....... ....+++.+. .+.......+..|+++++++.|+.+....+|+.+++.+.+.+.++.
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~-~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~  411 (485)
T TIGR00711       333 VGFYWRAFTFTPDTPFLAIALP-QFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTNR  411 (485)
T ss_pred             HHHHHHhccCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  0       11111111 1222222222 2233455667789999999999999999999999999999988753

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.95  E-value=4.7e-25  Score=203.76  Aligned_cols=319  Identities=14%  Similarity=0.076  Sum_probs=211.1

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHH-hhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMF-SGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILF   76 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~-~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~   76 (420)
                      +|.+..+.....+.+.+...+.+++ |+++||+||||.++. +..+..++.++++++  ++.+++.|            +
T Consensus        28 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------~   95 (375)
T TIGR00899        28 VRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLG------------V   95 (375)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHH------------H
Confidence            3567778888888888888888899 999999999887654 556666677777776  77888889            9


Q ss_pred             HHHHHhhcccchhhhhhhhhccCccchhhh--HhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccc-cccee
Q psy6665          77 YVAISVIAMGPSPAIVYITEVARPDLRGAL--ICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIP-SPVWL  149 (420)
Q Consensus        77 l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~--~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~-~~~~l  149 (420)
                      +.|.+.+ ...+...++..|+.|+++|++.  .+....+.++|..+++.+++.+    +||+.|++.++..++. ...++
T Consensus        96 ~~g~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  174 (375)
T TIGR00899        96 LLSSFAS-TANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL  174 (375)
T ss_pred             HHHhhhh-hhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            9988877 6666678888999888777654  5777777888888888877665    8999999988776554 11122


Q ss_pred             eecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHh
Q psy6665         150 LNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFY  229 (420)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (420)
                      ..++.+++.              +        ++     +++.+.++.++ ++..+ .......+...    .......+
T Consensus       175 ~~~~~~~~~--------------~--------~~-----~~~~~~~~~~~-~~~~~-~~~~~~~~~~~----~~~~~~~~  221 (375)
T TIGR00899       175 FLPSYPRGA--------------P--------GA-----LTRLEVRGLLA-SRDTR-LLFVACTLMWG----CNILYIIN  221 (375)
T ss_pred             hCCCcccCc--------------c--------cc-----cCcchhhhhhc-CcchH-HHHHHHHHHHH----HHHHHHhh
Confidence            122111000              0        00     00011112222 22221 11121111111    12334456


Q ss_pred             HHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHHHHHHH
Q psy6665         230 AVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILFYVAIS  296 (420)
Q Consensus       230 ~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~  296 (420)
                      .|.++++. |. +.+.+..........+++.++.+++.||++||+.+..+...           .+...........+..
T Consensus       222 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  301 (375)
T TIGR00899       222 MPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIF  301 (375)
T ss_pred             hHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67777554 77 55666666666677788889999999999999877665443           1122222222222222


Q ss_pred             hhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHh
Q psy6665         297 VIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYV  367 (420)
Q Consensus       297 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  367 (420)
                      .....+....+..|..|++ ++++.++.+...++|..++|.+.|.+.+..| +...+.+.+++.+++.+..
T Consensus       302 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~  370 (375)
T TIGR00899       302 IGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWS-YHAVYWFAIVMLIVALFCL  370 (375)
T ss_pred             HHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHH
Confidence            2223455567888888864 6799999999999999999999999999988 8888888887777776655

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.95  E-value=3.3e-25  Score=205.52  Aligned_cols=300  Identities=14%  Similarity=0.150  Sum_probs=206.6

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFY   77 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l   77 (420)
                      +|.+.++.....+.+.++..++.++ |+++||+|||+++..+.++.+++.+.+.+.  ++.+++.|            ++
T Consensus        35 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~l  102 (385)
T TIGR00710        35 LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLR------------FV  102 (385)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHH------------HH
Confidence            3567778888999999999999999 999999999999999999999999988887  88899999            99


Q ss_pred             HHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccc-ccceeeec
Q psy6665          78 VAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIP-SPVWLLNK  152 (420)
Q Consensus        78 ~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~-~~~~l~~~  152 (420)
                      .|++.+ ...+...+++.|++|+++|+++.++.+....+|..+++.+++.+    +||+.|++.++..++. ...++..+
T Consensus       103 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (385)
T TIGR00710       103 QAFGAS-AGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILP  181 (385)
T ss_pred             HHcchh-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999 77777999999999999999999999999999999998888765    8999998877766554 11111111


Q ss_pred             CcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhHHH
Q psy6665         153 GRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQ  232 (420)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (420)
                      ++.++.                       ++ .+.++..++.++.++ ++..+...     ...............+.|.
T Consensus       182 ~~~~~~-----------------------~~-~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  231 (385)
T TIGR00710       182 ETLPYE-----------------------AR-IQISTYFETFLLLLK-SKMFWGYA-----LIYGASFGGFFAFFSGAPF  231 (385)
T ss_pred             CCCCCc-----------------------cc-CCHHHHHHHHHHHHc-CchhHHHH-----HHHHHHHHHHHHHHHcChH
Confidence            111000                       00 000011112223332 22222111     1111122224455667787


Q ss_pred             HHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc----------h-----hHHHHHHH-HHHHH
Q psy6665         233 FLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE----------K-----SLIPVFCI-LFYVA  294 (420)
Q Consensus       233 ~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~----------~-----~~~~~~~~-~~~~~  294 (420)
                      ++++. |. +.+.+.......++.+++.++.+++.||+++|+.+..+..+          .     ........ ....+
T Consensus       232 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  311 (385)
T TIGR00710       232 VYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVG  311 (385)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence            77644 77 67777888888899999999999999999999876655433          0     11111111 11121


Q ss_pred             HHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHH
Q psy6665         295 ISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKD  344 (420)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~  344 (420)
                      .......+.......|..| +.++++.++.+.....++.+.+.+.+.+.+
T Consensus       312 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~  360 (385)
T TIGR00710       312 IGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHG  360 (385)
T ss_pred             HHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            2122234555577778877 568999999999988777766666664433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.94  E-value=3.7e-25  Score=205.45  Aligned_cols=306  Identities=15%  Similarity=0.183  Sum_probs=199.8

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHHH
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFYV   78 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l~   78 (420)
                      |.+.++.....+.+.++..++.++ |+++||+|||+.++.+.++..++.+.+...  ++.+++.|            +++
T Consensus        34 ~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~------------~l~  101 (392)
T PRK10473         34 NASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGR------------FLQ  101 (392)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH------------HHH
Confidence            566777888889999999999999 999999999999999999999999988877  78888999            999


Q ss_pred             HHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccc-ccceeeecC
Q psy6665          79 AISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIP-SPVWLLNKG  153 (420)
Q Consensus        79 G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~-~~~~l~~~~  153 (420)
                      |++.+ ...+....++.|++|+++|+++.++.+....+|..++|.++..+    +||+.|++.++..++. ...++..++
T Consensus       102 g~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  180 (392)
T PRK10473        102 GIGAG-CCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKE  180 (392)
T ss_pred             Hhhhh-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999 77777899999999999999999999999999988888887665    8999998887766554 111111121


Q ss_pred             cHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhHHHH
Q psy6665         154 RANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQF  233 (420)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (420)
                      +.++.              +        +   ++.+..+..++.++ ++..+...........     .......+.|.+
T Consensus       181 ~~~~~--------------~--------~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~  229 (392)
T PRK10473        181 TRPAR--------------A--------P---AASSKPRENSESLL-NRFFLSRLVITTLSVT-----VILTFVNTSPVL  229 (392)
T ss_pred             CCCcc--------------c--------C---CccchHHHHHHHHh-CHHHHHHHHHHHHHHH-----HHHHHHHhCHHH
Confidence            11100              0        0   00000111122222 2222221221111111     122344555666


Q ss_pred             HHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc------------hhHHHHHHHHHHHHHHhhc
Q psy6665         234 LEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE------------KSLIPVFCILFYVAISVIG  299 (420)
Q Consensus       234 ~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~  299 (420)
                      +.+. |+ +.+.+.......++.+++.++.+++.||++||+.+..+..+            ..............+...+
T Consensus       230 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~  309 (392)
T PRK10473        230 LMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVG  309 (392)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6554 77 55667777888899999999999999999999888766554            1111111111222222222


Q ss_pred             hhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHH
Q psy6665         300 MLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFAL  358 (420)
Q Consensus       300 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~  358 (420)
                      .   ......+..|.+.|+   |.......++..+++.+.+++.++.| +.......+.
T Consensus       310 ~---~~~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g-~~~~~~~~~~  361 (392)
T PRK10473        310 F---GVAMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLG-ISAWNMLIGI  361 (392)
T ss_pred             h---HHHHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhc-cchhHHHHHH
Confidence            2   123334455554443   44455566777788888888888888 5443444333

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.94  E-value=8.1e-25  Score=202.25  Aligned_cols=296  Identities=12%  Similarity=0.144  Sum_probs=198.3

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHHH
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFYV   78 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l~   78 (420)
                      |.+.++.....+++.++..++.++ |+++||+|||+++..+.++.+++.+.+.+.  ++.+++.|            ++.
T Consensus        22 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------------~l~   89 (377)
T PRK11102         22 GVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMR------------FLH   89 (377)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHH------------HHH
Confidence            567778888899999999999999 999999999999999999999999998887  88889999            999


Q ss_pred             HHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccc-ccceeeecC
Q psy6665          79 AISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIP-SPVWLLNKG  153 (420)
Q Consensus        79 G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~-~~~~l~~~~  153 (420)
                      |++.+ ...+...+++.|++|+++|++++++.+....+|..+++.+++.+    +||+.|++.+++.++. ...++..++
T Consensus        90 g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (377)
T PRK11102         90 GLAAA-AASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPE  168 (377)
T ss_pred             HHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999 77777899999999999999999999999999999999887765    8999998877766554 111111121


Q ss_pred             cHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhHHHH
Q psy6665         154 RANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQF  233 (420)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (420)
                      +.++.+                      ++..+.++...+.++.++ ++.     .+...........+......+.|.+
T Consensus       169 ~~~~~~----------------------~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  220 (377)
T PRK11102        169 TLPKER----------------------RQPFHLRTTIRNFASLFR-HKR-----VLGYMLASGFSFAGMFSFLTAGPFV  220 (377)
T ss_pred             cCcccc----------------------cCCCChHHHHHHHHHHHc-ChH-----HHHHHHHHHHHHHHHHHHHHcCHHH
Confidence            111000                      000000001112223332 221     1111122222222344555566766


Q ss_pred             HHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc----------h-----hHHHHHHHHHHHHHH
Q psy6665         234 LEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE----------K-----SLIPVFCILFYVAIS  296 (420)
Q Consensus       234 ~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~----------~-----~~~~~~~~~~~~~~~  296 (420)
                      +.+. |+ +.+.+.......+..+++.++.+++.||+|+|+.+..+...          .     ...............
T Consensus       221 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (377)
T PRK11102        221 YIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGC  300 (377)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            6554 77 77788888888999999999999999999999887765542          0     011111111111111


Q ss_pred             hhchhhHHHHHhcccCChhhhhhhHHHHHHHHH-HHHHHHHHHh
Q psy6665         297 VIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAH-ILMFFALQYY  339 (420)
Q Consensus       297 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~-~~~~~~~~~~  339 (420)
                      .....+.......|..| +.++++.++.+.... ++..+++.+.
T Consensus       301 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~  343 (377)
T PRK11102        301 VSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLS  343 (377)
T ss_pred             HHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            11122333456677766 788999998877654 4455555543

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.94  E-value=1.5e-24  Score=200.55  Aligned_cols=328  Identities=10%  Similarity=-0.018  Sum_probs=211.3

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHhHHHHHhhccccccchhHHHHHHHHH
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYYTQLIMTGQIEKSLIPVFCILFYVAI   80 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~l~G~   80 (420)
                      +.+.....+..+.+.+++.+..++ |+++||+|||++++.+.++.+++++.+.+... .++.|            +++|+
T Consensus        34 ~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~-~~~~r------------~l~G~  100 (393)
T PRK11195         34 HYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIH-PLLAY------------GLVGI  100 (393)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHH-HHHHH------------HHHHH
Confidence            445566778888999999999999 99999999999999999999998887766522 27789            99999


Q ss_pred             HhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh---hhHHHHHhHhhhccccccceeeecCcHHH
Q psy6665          81 SVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL---HWRTVAWLSLAYILIPSPVWLLNKGRANQ  157 (420)
Q Consensus        81 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~---~wr~~f~~~~~~~~~~~~~~l~~~~~~~~  157 (420)
                      +.+ ...+...+++.|++|+++|++++++.+....+|..+||.+++.+   .|+..+.+.+...++....+...++++++
T Consensus       101 ~~a-~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~  179 (393)
T PRK11195        101 GAA-AYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLAALFNLFIPRLGAR  179 (393)
T ss_pred             HHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Confidence            999 88888999999999999999999999999999999999999887   45555555544322210011111111110


Q ss_pred             HHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhHHHHHHhh
Q psy6665         158 ALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDM  237 (420)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (420)
                      .+       +.+ .+..       .   ..++-++..+..++ ++..+. ......+...    ......+..|.+.++.
T Consensus       180 ~~-------~~~-~~~~-------~---~~~~~~~~~~~l~~-~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~  235 (393)
T PRK11195        180 RP-------GQS-WNPI-------A---LLRDFFHACRVLWR-DKLGRF-SLAGTTLFWG----AGATLRFLVLAWAPVA  235 (393)
T ss_pred             cc-------ccC-CCHH-------H---HHHHHHHHHHHHHh-CchhHH-HHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence            00       000 0000       0   00000112233333 332222 2222111111    1223344455555554


Q ss_pred             -CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc----------hhHHHHHHHHHHHHHHhhch-hhHH
Q psy6665         238 -GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE----------KSLIPVFCILFYVAISVIGM-LSIP  304 (420)
Q Consensus       238 -g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~-~~~~  304 (420)
                       |. +.+.+......+++.++++++.+++.||.++++.+..+...          .+...... .....+...+. .+..
T Consensus       236 lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~G~~~g~~~~~~  314 (393)
T PRK11195        236 LGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGILMGLVVLLMALQHSLLPAYP-LLILIGALGGFFVVPM  314 (393)
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHhhhhhhhhH
Confidence             77 77788888999999999999999999999888766655332          11111112 22122222222 3334


Q ss_pred             HHHhcccCChhh-hhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhc
Q psy6665         305 WTMTAEIFPLEI-RGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIF  370 (420)
Q Consensus       305 ~~~~~~~~p~~~-r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  370 (420)
                      .+...+..|++. +|++.++.+...+++..++..+.+.+ +..| ....+.+.+...++...+.+.+
T Consensus       315 ~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~  379 (393)
T PRK11195        315 NALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLG-VPVVAVIVGFGLLVALAMALLW  379 (393)
T ss_pred             HHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcC-CCHHHHHHHHHHHHHHHHHHHH
Confidence            566777766554 79999999999999999999998854 6777 6666666555555555554433

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.94  E-value=1.6e-24  Score=201.03  Aligned_cols=319  Identities=12%  Similarity=0.049  Sum_probs=210.4

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHHH
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFYV   78 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l~   78 (420)
                      |.+........+...+...+..++ |+++||+|||+++..+.++.+++.+.+.+.  ++.+++.|            +++
T Consensus        42 g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~------------~l~  109 (400)
T PRK11646         42 GWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSC------------ILS  109 (400)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHH------------HHH
Confidence            556677777888888888888899 999999999999999999999999998887  88889999            999


Q ss_pred             HHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh---hhHHHHHhHhhhccccc-cceeeecCc
Q psy6665          79 AISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL---HWRTVAWLSLAYILIPS-PVWLLNKGR  154 (420)
Q Consensus        79 G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~---~wr~~f~~~~~~~~~~~-~~~l~~~~~  154 (420)
                      |++.+ ...+...+++.|++|+++|++++++.....++|..++|.+++.+   +||+.|++.++..++.. ...+..+++
T Consensus       110 g~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~~  188 (400)
T PRK11646        110 GLGGT-LFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPAY  188 (400)
T ss_pred             HHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            99998 77777889999999999999999999999999999999888876   89999998877655431 011111110


Q ss_pred             HHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhHHHHH
Q psy6665         155 ANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFL  234 (420)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (420)
                      .++                        +   ++++.++++++.++ ++..+. .......   . .........+.|.+.
T Consensus       189 ~~~------------------------~---~~~~~~~~~~~~~~-~~~~~~-~~~~~~~---~-~~~~~~~~~~~p~~~  235 (400)
T PRK11646        189 KLS------------------------T---VRTPVREGMTRVLR-DKRFVT-YVLTLTG---Y-YMLAVQVMLMLPIMV  235 (400)
T ss_pred             ccc------------------------c---cchhhHHHHHHHHc-CchHHH-HHHHHHH---H-HHHHHHHHHhhhhhH
Confidence            000                        0   00001122333333 222221 1111111   1 111222445778888


Q ss_pred             HhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhh-ccCchhhHhhhccc-----------hhHHHHHHHHHHHHHHhhchh
Q psy6665         235 EDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLR-TYGRRSLTMFSQIE-----------KSLIPVFCILFYVAISVIGML  301 (420)
Q Consensus       235 ~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~  301 (420)
                      ++.+. +.+.+.......+....+....+.+.| |++.++.+..+..+           ++...................
T Consensus       236 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~  315 (400)
T PRK11646        236 NDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAE  315 (400)
T ss_pred             HhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            87654 566666666666666655555555554 56655544444332           111111111111111122234


Q ss_pred             hHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCc---chHHHHHHHHHHHHHHHH
Q psy6665         302 SIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGG---SAMVQWFFALISVISIVY  366 (420)
Q Consensus       302 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~---~~~~~~~~~~~~~~~~~~  366 (420)
                      |...++..|..|++.||++.|+.+....++..++|.+.|.+.|+.++   ....+...++++++..+.
T Consensus       316 p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        316 PARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             ccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence            55568888999999999999999999999999999999999998642   244555555555555443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.94  E-value=2.8e-25  Score=194.46  Aligned_cols=323  Identities=15%  Similarity=0.141  Sum_probs=238.9

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh-----HHHHHhhccccccchhHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY-----TQLIMTGQIEKSLIPVFCI   74 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~r~~~~~~~~~~~   74 (420)
                      +|.|.++..+..++..+...+.-++ |.+.||+|.|++..++.++..+-.+..+++     ++++++.+           
T Consensus        44 ~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~g-----------  112 (417)
T COG2223          44 FGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIG-----------  112 (417)
T ss_pred             cCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHH-----------
Confidence            4678888889999998888888899 999999999999999999999999999998     55999999           


Q ss_pred             HHHHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhh----hh---hHHHHHhHhhhcccc-cc
Q psy6665          75 LFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAV----LH---WRTVAWLSLAYILIP-SP  146 (420)
Q Consensus        75 ~~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~----~~---wr~~f~~~~~~~~~~-~~  146 (420)
                       .+.|++.+ ...+ ...++++|+|||++|.++++.. ..|+|..+...+++.    .+   ||....+..+..++. ..
T Consensus       113 -ll~G~~Ga-sFav-~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~  188 (417)
T COG2223         113 -LLLGLAGA-SFAV-GMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVL  188 (417)
T ss_pred             -HHHhcccc-eehc-ccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence             99999988 7777 7889999999999999999998 777777665555544    47   998877777666654 22


Q ss_pred             ceeeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhH
Q psy6665         147 VWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYIT  226 (420)
Q Consensus       147 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (420)
                      .|+..++.++..                       ...++..  +.+.+...      +++-.|...+.++..+.++..+
T Consensus       189 ~~~~~~d~p~~r-----------------------~~~~~~~--~~~~~~v~------~~~~~W~lsllY~~tFG~Fvgf  237 (417)
T COG2223         189 AWLGMNDVPEHR-----------------------ASVKPQL--PAQLKAVF------SNKDTWLLSLLYFATFGGFVGF  237 (417)
T ss_pred             HHHHhCCChhhh-----------------------ccccccc--hhHHHHHh------cCcchHHHHHHHHHHHHHHHHH
Confidence            333333322210                       0000000  01122222      1223444445555556678889


Q ss_pred             HHhHHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc----------h-------h--HHH
Q psy6665         227 IFYAVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE----------K-------S--LIP  285 (420)
Q Consensus       227 ~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~----------~-------~--~~~  285 (420)
                      ..++|.|+++. +. +.+++.......+.+.+.++++|+++||+|.+|.+...+..          .       .  ...
T Consensus       238 s~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~  317 (417)
T COG2223         238 SAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVF  317 (417)
T ss_pred             HHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHH
Confidence            99999999987 77 77888888889999999999999999999988887666554          0       1  111


Q ss_pred             HHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHH
Q psy6665         286 VFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIV  365 (420)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  365 (420)
                      .........+.+.+-. ..+.++..++|. +-|.+.|+....+.+|++.-|...+...+.+|++...|+++..+.+++.+
T Consensus       318 ~~~~l~l~~~~G~GnG-svfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v  395 (417)
T COG2223         318 VAVFLALFVFAGLGNG-SVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALV  395 (417)
T ss_pred             HHHHHHHHHHhccCcc-hheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            2222222222333333 345777778775 56899999999999999999999999999999888899999998888888


Q ss_pred             Hhhhcc
Q psy6665         366 YVYIFL  371 (420)
Q Consensus       366 ~~~~~~  371 (420)
                      ..+...
T Consensus       396 ~~~~~y  401 (417)
T COG2223         396 LTWALY  401 (417)
T ss_pred             HHHHHH
Confidence            776544

>KOG1330|consensus

Probab=99.94  E-value=5.9e-28  Score=212.73  Aligned_cols=314  Identities=15%  Similarity=0.040  Sum_probs=208.4

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFY   77 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l   77 (420)
                      ||.+.+...+..+++.+.+++.+|+ |+++|||+||+++.+|..++.++.++++++  ||+++++|            .+
T Consensus        63 fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R------------~~  130 (493)
T KOG1330|consen   63 FNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCR------------GF  130 (493)
T ss_pred             cCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHH------------HH
Confidence            4677788888889999999999999 999999999999999999999999999999  99999999            99


Q ss_pred             HHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh-----hhHHHHHhHhhhcccc-ccceeee
Q psy6665          78 VAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL-----HWRTVAWLSLAYILIP-SPVWLLN  151 (420)
Q Consensus        78 ~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~-----~wr~~f~~~~~~~~~~-~~~~l~~  151 (420)
                      .|+|.+ .+.+.++++++|.+|.++|++++++++.+...|..+|..++..+     .|||.|+..++++++. ....++.
T Consensus       131 vGiGeA-s~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~  209 (493)
T KOG1330|consen  131 VGIGEA-SYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFV  209 (493)
T ss_pred             hccchh-hhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhc
Confidence            999999 88888999999999999999999999999999999988888776     5999999999888876 2222222


Q ss_pred             cCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHh--hccccchHHHHHHHHHHHHHhcchhhHHHh
Q psy6665         152 KGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMV--TMATGIKPLLVITVLFALQQLAGIYITIFY  229 (420)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (420)
                      +++...+.+   +..               .+.+..++....++|...  ..+.+....+-.....+     ....+..|
T Consensus       210 ~eP~rga~~---~~~---------------~~~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~f-----v~Gs~sww  266 (493)
T KOG1330|consen  210 REPERGARD---EVD---------------GENKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQF-----VIGSLSWW  266 (493)
T ss_pred             cCccccccc---ccc---------------cCCcCCCCccchHHHHHHHHccCceeeehHHHHHHHH-----hccccchh
Confidence            222111100   000               000001111222333332  12222222222222222     23445556


Q ss_pred             HHHHHHhh----CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCch-------hhHhhhccc-----------------
Q psy6665         230 AVQFLEDM----GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRR-------SLTMFSQIE-----------------  280 (420)
Q Consensus       230 ~~~~~~~~----g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~-------~~~~~~~~~-----------------  280 (420)
                      .|.+....    |+ ..+...+..+...++.+|.+++|.++||+.|+       +.-.+...+                 
T Consensus       267 ~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~  346 (493)
T KOG1330|consen  267 APAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTS  346 (493)
T ss_pred             hhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhh
Confidence            66655432    55 44566677788899999999999999995432       111111000                 


Q ss_pred             hhHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHH-HHHHHhHHHHHhcCcch
Q psy6665         281 KSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMF-FALQYYPWFKDSVGGSA  350 (420)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~-~~~~~~g~l~~~~g~~~  350 (420)
                      ......+.+.++.......-.....-+..|+.|++.|.++.++...+..+.+- -+|++.|.+.|+..++.
T Consensus       347 ~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~  417 (493)
T KOG1330|consen  347 SSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK  417 (493)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence            11111111111111111111222235667889999999999999988887665 45559999998765333

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.94  E-value=2.6e-24  Score=200.22  Aligned_cols=319  Identities=13%  Similarity=0.079  Sum_probs=206.5

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFY   77 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l   77 (420)
                      ++.+.+.....++++.++..+++++ |+++||+|||++++.+.++++++++++.++  ++.+++.|            ++
T Consensus        46 ~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~l  113 (413)
T PRK15403         46 FNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIAR------------FI  113 (413)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH------------HH
Confidence            3567778888999999999999999 999999999999999999999999999888  88999999            99


Q ss_pred             HHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccccc-ceeeec
Q psy6665          78 VAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIPSP-VWLLNK  152 (420)
Q Consensus        78 ~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~~~-~~l~~~  152 (420)
                      +|++.+ ...+....++.|++|+++|++++++......+|..++|.+++.+    +||+.|++.++..++... .++..+
T Consensus       114 ~Gi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp  192 (413)
T PRK15403        114 QGTSIC-FIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMP  192 (413)
T ss_pred             HHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999998 76666788899999999999999999999999999998888765    899999998877665411 111111


Q ss_pred             CcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhHHH
Q psy6665         153 GRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQ  232 (420)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (420)
                      ++.++.                       ++..+.++..+++++.++ +     +.++...+.........+....+.|.
T Consensus       193 ~~~~~~-----------------------~~~~~~~~~~~~~~~ll~-~-----~~~~~~~l~~~~~~~~~~~~~~~~P~  243 (413)
T PRK15403        193 ETVKRG-----------------------AVPFSAKSVLRDFRNVFR-N-----RLFLTGAATLSLSYIPMMSWVAVSPV  243 (413)
T ss_pred             CCcccc-----------------------CCCCChHHHHHHHHHHHc-C-----HHHHHHHHHHHHHHHHHHHHHHhChH
Confidence            110000                       000000000112233332 2     22332322233333345566677898


Q ss_pred             HHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhc-cCchhh------Hhhhccc--------hhHHHHHHHHHHHHH
Q psy6665         233 FLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRT-YGRRSL------TMFSQIE--------KSLIPVFCILFYVAI  295 (420)
Q Consensus       233 ~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~------~~~~~~~--------~~~~~~~~~~~~~~~  295 (420)
                      ++++. |+ +.+.+........+.+++..+.+.+.++ .++|..      ...+..+        .+............+
T Consensus       244 ~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~  323 (413)
T PRK15403        244 ILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYA  323 (413)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence            88876 77 6666777666777778877777776644 444432      1112111        111111111111111


Q ss_pred             Hhhc-hhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHH
Q psy6665         296 SVIG-MLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISI  364 (420)
Q Consensus       296 ~~~~-~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  364 (420)
                      .+.+ ..|......-+. ....+|++.++.+.....+..+++...+++.++ + ...++...++++.+..
T Consensus       324 ~G~~~~~p~~~~~al~~-~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~-~~~~~~~~~~~~~~~~  390 (413)
T PRK15403        324 FGIGLIFPTLFRFTLFS-NNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-G-GRLPFHLLAVVAGVIV  390 (413)
T ss_pred             HHHHHHhHHHHHHHhcc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-C-CchHHHHHHHHHHHHH
Confidence            1211 223333222111 222479999999999999999999999988777 4 4666666555554443

>PRK11043 putative transporter; Provisional

Probab=99.94  E-value=4.8e-24  Score=198.60  Aligned_cols=299  Identities=17%  Similarity=0.135  Sum_probs=205.0

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHHH
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFYV   78 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l~   78 (420)
                      |.+.++.....+++.++..++.++ |+++||+|||+++..+..+.+++.+++.+.  ++.+++.|            +++
T Consensus        37 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------~l~  104 (401)
T PRK11043         37 QTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLR------------FVQ  104 (401)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH------------HHH
Confidence            567778888999999999999999 999999999999999999999999888887  88899999            999


Q ss_pred             HHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhccccccceeeecCc
Q psy6665          79 AISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIPSPVWLLNKGR  154 (420)
Q Consensus        79 G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~~~~~l~~~~~  154 (420)
                      |++.+ ...+...+++.|++|++++++..+.......+|..++|.+++.+    +||+.|++.+++.++....++..+++
T Consensus       105 G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  183 (401)
T PRK11043        105 AVGVC-SAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPS  183 (401)
T ss_pred             HhhhH-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99988 66666788999999999999999998888888888888877665    89999988877766541111111111


Q ss_pred             HHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhHHHHH
Q psy6665         155 ANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFL  234 (420)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (420)
                      .++.                           ++++++.++++.++ ++..+.......     ...........+.|.+.
T Consensus       184 ~~~~---------------------------~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~p~~~  230 (401)
T PRK11043        184 KKAR---------------------------KQSQDALTFKQLLK-SKTYLGNVLIFA-----ACSAAFFAWLTGSPFIL  230 (401)
T ss_pred             CCcc---------------------------ccchHHHHHHHHHc-ChhHHHHHHHHH-----HHHHHHHHHHHHhHHHH
Confidence            0000                           00001122333333 222221111111     11112345566788888


Q ss_pred             HhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc----------------hhHHHHHHHHHHHHHHh
Q psy6665         235 EDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE----------------KSLIPVFCILFYVAISV  297 (420)
Q Consensus       235 ~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~  297 (420)
                      ++.|+ +.+.+.......++.+++.++.+++.||+++|+........                .............+...
T Consensus       231 ~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (401)
T PRK11043        231 EQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAAN  310 (401)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence            77778 66667766777788889999999999999988754332221                11111111111222222


Q ss_pred             hchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcC
Q psy6665         298 IGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVG  347 (420)
Q Consensus       298 ~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g  347 (420)
                      ....+.......|..| +.++++.|+.+.....++..++.+.|.+.+...
T Consensus       311 ~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~  359 (401)
T PRK11043        311 GAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPL  359 (401)
T ss_pred             HHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCCh
Confidence            2334555556667766 579999999999999999999999998877543

>PRK10054 putative transporter; Provisional

Probab=99.94  E-value=3.3e-24  Score=198.47  Aligned_cols=321  Identities=8%  Similarity=-0.011  Sum_probs=211.8

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFY   77 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l   77 (420)
                      +|.+..+..+..+.+.++..+++++ |+++||+|||++++++.++..++.+...+.  ++.+++.|            ++
T Consensus        38 ~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~  105 (395)
T PRK10054         38 YSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFF------------AL  105 (395)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHH------------HH
Confidence            3667788889999999999999999 999999999999999999998888888777  77777788            88


Q ss_pred             HHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh---hhHHHHHhHhhhcccc-ccceeeecC
Q psy6665          78 VAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL---HWRTVAWLSLAYILIP-SPVWLLNKG  153 (420)
Q Consensus        78 ~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~---~wr~~f~~~~~~~~~~-~~~~l~~~~  153 (420)
                      .|.+.+ ...+....+..|..|+++|+++.++.....++|..++|.+++.+   +|+.+|++.++..++. ...++..++
T Consensus       106 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~  184 (395)
T PRK10054        106 INCAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQR  184 (395)
T ss_pred             HHHHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhc
Confidence            888877 66666889999999999999999999999999999999998876   8999999887666554 111111111


Q ss_pred             cHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhHHHH
Q psy6665         154 RANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQF  233 (420)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (420)
                      +.++.              ++       +     +++..+.++.++ ++..+.......+... .    ......+.+.+
T Consensus       185 ~~~~~--------------~~-------~-----~~~~~~~~~~~~-~~~~~~~~~~~~l~~~-~----~~~~~~~~~~~  232 (395)
T PRK10054        185 SEKAI--------------AT-------E-----TGSVWSPSVLLQ-DKALLWFTCSGFLASF-V----SGAFASCISQY  232 (395)
T ss_pred             ccccc--------------cc-------c-----hhhhhhhhhhcc-CceehHHHHHHHHHHH-H----HHHhhhhHHHH
Confidence            10000              00       0     000011122222 2322222222111111 1    12222334444


Q ss_pred             HH---hhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHH-HHHHHHHHHHHh
Q psy6665         234 LE---DMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIP-VFCILFYVAISV  297 (420)
Q Consensus       234 ~~---~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~-~~~~~~~~~~~~  297 (420)
                      ..   +.+. ....+.......+.........+.+.||.++|+.+..+..+           .+... +...........
T Consensus       233 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  312 (395)
T PRK10054        233 VMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGE  312 (395)
T ss_pred             HHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHH
Confidence            42   2244 33445555666666667778889999999999887666543           11111 111222222222


Q ss_pred             hchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhh
Q psy6665         298 IGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVY  368 (420)
Q Consensus       298 ~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  368 (420)
                      ....|.....+.+..|++.++++.+..+ ...+|..++|.+.|.+.|+.| +...+++.+....+..++..
T Consensus       313 ~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        313 IIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLP-PWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             HHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcC-hhhHHHHHHHHHHHHHHHHH
Confidence            2224565678889999999999998765 677899999999999999998 77777666665555555443

>TIGR00896 CynX cyanate transporter

Probab=99.93  E-value=4e-24  Score=195.78  Aligned_cols=301  Identities=13%  Similarity=0.099  Sum_probs=203.7

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFY   77 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l   77 (420)
                      +|.+.++.....+.+.++..++.++ |+++||+|||+++.++.++..++.+.+ ..  .+.+++.|            ++
T Consensus        30 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~------------~~   96 (355)
T TIGR00896        30 LGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGT------------AL   96 (355)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHH------------HH
Confidence            4677888899999999999999999 999999999999999999888888777 44  77888999            99


Q ss_pred             HHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh------hhHHHHHhHhhhccccccceeee
Q psy6665          78 VAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL------HWRTVAWLSLAYILIPSPVWLLN  151 (420)
Q Consensus        78 ~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~------~wr~~f~~~~~~~~~~~~~~l~~  151 (420)
                      .|++.+ ...+....++.|++| ++|++++++.+.+.++|..+++.++..+      +||+.|...++..++....++  
T Consensus        97 ~g~g~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~--  172 (355)
T TIGR00896        97 IGVGIA-IINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALLAWI--  172 (355)
T ss_pred             HHHHHH-HHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh--
Confidence            999999 666667788899886 6899999999999999998888776654      399988776655443311111  


Q ss_pred             cCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhHH
Q psy6665         152 KGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAV  231 (420)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (420)
                      ++..++           + +          ++   ++..+...++.++ +     +..+......+......+....|.|
T Consensus       173 ~~~~~~-----------~-~----------~~---~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~lp  221 (355)
T TIGR00896       173 PQVRRR-----------V-A----------AN---QTTTRLTPVRIWR-S-----PLAWQVTVFFGLQSGLYYSLIGWLP  221 (355)
T ss_pred             hhhccc-----------c-C----------CC---CCCCCCCCchhhc-C-----HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000000           0 0          00   0000011122222 1     1122222222222223556677899


Q ss_pred             HHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccC-chhhHhhhccc----------hhHHHHHHHHHHHHHHhhc
Q psy6665         232 QFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYG-RRSLTMFSQIE----------KSLIPVFCILFYVAISVIG  299 (420)
Q Consensus       232 ~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~  299 (420)
                      .++++.|. ..+.+.......++.++++++.|++.||++ ||+.+..+..+          .............+.....
T Consensus       222 ~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~  301 (355)
T TIGR00896       222 AILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWAWALVLGLGQGG  301 (355)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhh
Confidence            99988788 677788888899999999999999999994 55554443332          1111111111222222222


Q ss_pred             hhhHHHHHhcc-cCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcc
Q psy6665         300 MLSIPWTMTAE-IFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGS  349 (420)
Q Consensus       300 ~~~~~~~~~~~-~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~  349 (420)
                      ..+...+...+ ..+++.++...++.+...+++..++|.+.|++.|+.|++
T Consensus       302 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~  352 (355)
T TIGR00896       302 AFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNW  352 (355)
T ss_pred             HhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            34444455544 445677799999999999999999999999999998844

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10133 L-fucose transporter; Provisional

Probab=99.93  E-value=8.4e-24  Score=197.84  Aligned_cols=319  Identities=10%  Similarity=0.007  Sum_probs=210.3

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHH---Hh--HHHHHhhccccccchhHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSG---YY--TQLIMTGQIEKSLIPVFCI   74 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~--~~~~~~~r~~~~~~~~~~~   74 (420)
                      +|.+..+.....+.+.+++.+++++ |+++||+|||+++..+.++++++.+++.   ++  ++.++++|           
T Consensus        56 ~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r-----------  124 (438)
T PRK10133         56 FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGL-----------  124 (438)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH-----------
Confidence            4677888899999999999999999 9999999999999999999999998863   34  88999999           


Q ss_pred             HHHHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhh---------------------------
Q psy6665          75 LFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAV---------------------------  127 (420)
Q Consensus        75 ~~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~---------------------------  127 (420)
                       +++|+|.+ ...+..+.++.|+.|+++|...+++.+..+.+|..+++.++..                           
T Consensus       125 -~l~G~g~g-~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~  202 (438)
T PRK10133        125 -FIIAAGLG-CLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKH  202 (438)
T ss_pred             -HHHHHHHH-HHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHH
Confidence             99999999 7777789999998877777778999999999999888877531                           


Q ss_pred             ---hhhHHHHHhHh-hhccccccceeeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccc
Q psy6665         128 ---LHWRTVAWLSL-AYILIPSPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMAT  203 (420)
Q Consensus       128 ---~~wr~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (420)
                         .+||++|+... +..++.. .....+.++.+.+            .+        ++ +++.+...+.++.++ ++.
T Consensus       203 ~~~~~w~~~f~~~~~v~~~~~~-~~~~~~~p~~~~~------------~~--------~~-~~~~~~~~~~~~ll~-~~~  259 (438)
T PRK10133        203 SLVLSVQTPYMIIVAIVLLVAL-LIMLTKFPALQSD------------NH--------SD-AKQGSFSASLSRLAR-IRH  259 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCcc------------cc--------cc-ccccchhhhHHHHHh-Cch
Confidence               25666665433 2222210 0000010000000            00        00 000000112233433 332


Q ss_pred             cchHHHHHHHHHHHHHhcchhhHHHhHHHHH-Hhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc
Q psy6665         204 GIKPLLVITVLFALQQLAGIYITIFYAVQFL-EDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE  280 (420)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~  280 (420)
                      .+. ..+..    +...........|.+.++ ++. |+ +.+.+.......++.++++++++++.||+++|+.+..+..+
T Consensus       260 ~~~-~~l~~----~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~  334 (438)
T PRK10133        260 WRW-AVLAQ----FCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALI  334 (438)
T ss_pred             HHH-HHHHH----HHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            222 11111    111122344556777774 443 77 77888889999999999999999999999999887666544


Q ss_pred             -----------hhHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcc
Q psy6665         281 -----------KSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGS  349 (420)
Q Consensus       281 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~  349 (420)
                                 ...... ......+++.....|..++...|..|++ .+.+.++.. ....++.++|.+.|.+.|..|+.
T Consensus       335 ~~~~~~~~~~~~~~~~~-~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~  411 (438)
T PRK10133        335 AMALCLISAFAGGHVGL-IALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNI  411 (438)
T ss_pred             HHHHHHHHHHcCChHHH-HHHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHh-HHhccchHHHHHHHHHHHhccch
Confidence                       111111 1222233333345677788888887754 677888776 45578889999999999987633


Q ss_pred             hHHHHHHHHHHHHH
Q psy6665         350 AMVQWFFALISVIS  363 (420)
Q Consensus       350 ~~~~~~~~~~~~~~  363 (420)
                      +..+++..+..+..
T Consensus       412 ~~~~~v~~~~~~~~  425 (438)
T PRK10133        412 PTAELIPALCFAVI  425 (438)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55555444433333

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.93  E-value=1.3e-23  Score=194.93  Aligned_cols=309  Identities=10%  Similarity=-0.008  Sum_probs=210.3

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh-----HHHHHhhccccccchhHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY-----TQLIMTGQIEKSLIPVFCI   74 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~r~~~~~~~~~~~   74 (420)
                      +|.+..+.....+.+.+++.+++++ |++.||+|||++++.+.++++++.+++..+     ++.+++.|           
T Consensus        33 ~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~-----------  101 (410)
T TIGR00885        33 FTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGL-----------  101 (410)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH-----------
Confidence            4667788889999999999999999 999999999999999999999999886443     78889999           


Q ss_pred             HHHHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh--------------------------
Q psy6665          75 LFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL--------------------------  128 (420)
Q Consensus        75 ~~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~--------------------------  128 (420)
                       ++.|+|.+ ...+..+.++.++.|+++|++.+++.+...++|..+++.++..+                          
T Consensus       102 -~l~G~g~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (410)
T TIGR00885       102 -FILTAGLG-FLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKH  179 (410)
T ss_pred             -HHHHhhHH-HHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHH
Confidence             99999999 77777899999999999999999999999999999998876543                          


Q ss_pred             ----hhHHHHHhHhhhccccccceeeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhcccc
Q psy6665         129 ----HWRTVAWLSLAYILIPSPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATG  204 (420)
Q Consensus       129 ----~wr~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (420)
                          +||++|++.+++.++....+...+.+..+.              +        ++  ++.+.+++.++.++ ++..
T Consensus       180 ~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~--------------~--------~~--~~~~~~~~~~~~~~-~~~~  234 (410)
T TIGR00885       180 SDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH--------------S--------DA--KQISFSASLSRLAR-IRHY  234 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--------------c--------cc--ccccchhhHHHHHh-ChhH
Confidence                499999888876655411111111100000              0        00  00000112223333 2222


Q ss_pred             chHHHHHHHHHHHHHhcchhhHHHhHHHHHHhhC--C-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-
Q psy6665         205 IKPLLVITVLFALQQLAGIYITIFYAVQFLEDMG--S-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-  280 (420)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-  280 (420)
                      +. .....+++.    ........|.+.|.++.+  . ...+............+|+++++++.||+++|+.+..+..+ 
T Consensus       235 ~~-~~l~~f~yv----g~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~  309 (410)
T TIGR00885       235 RE-GVIAQFFYV----GVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIG  309 (410)
T ss_pred             HH-HHHHHHHHH----HHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            22 222222222    223345678888887643  2 22233344455577889999999999999999887665554 


Q ss_pred             ----------hhHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhc----
Q psy6665         281 ----------KSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSV----  346 (420)
Q Consensus       281 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~----  346 (420)
                                .+..... .....+++.....|..++...+..+++.+..+.++....  +|+.+.|++.|.+.|..    
T Consensus       310 ~~~~ll~~~~~~~~~~~-~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~~~~~  386 (410)
T TIGR00885       310 MALCLGSIFAGGHVGLY-CLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMKEIAA  386 (410)
T ss_pred             HHHHHHHHHcCChHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHhcccc
Confidence                      2222222 233333444455688889999999977665555555544  99999999999999964    


Q ss_pred             -CcchHHHHH
Q psy6665         347 -GGSAMVQWF  355 (420)
Q Consensus       347 -g~~~~~~~~  355 (420)
                       |+....|++
T Consensus       387 ~~~~~~~~~~  396 (410)
T TIGR00885       387 APAVNTSFIL  396 (410)
T ss_pred             cCccchHHHH
Confidence             335555554

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.93  E-value=3.7e-23  Score=191.78  Aligned_cols=323  Identities=13%  Similarity=0.066  Sum_probs=197.9

Q ss_pred             CCCccchHHHHHHHH-HHHHHHHHHHHHHHHhhcchhHHH-HhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHH
Q psy6665           1 MGSRMNVYLATVLVG-VVRMVFGLLTSQLLRTYGRRSLTM-FSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILF   76 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~-~~g~~~~~~~g~l~dr~Grr~~l~-~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~   76 (420)
                      +|.|.++.....+.. .++..++.+.+.++||+||||.++ .+.++.+++.++.+++  ++.+++.+            .
T Consensus        46 ~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------~  113 (393)
T PRK15011         46 VHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVG------------V  113 (393)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH------------H
Confidence            356667777776544 557777776644499999998754 5566666777666666  66665555            5


Q ss_pred             HHHHHhhcccchhhhhhhhhccCccch--hhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccc-cccee
Q psy6665          77 YVAISVIAMGPSPAIVYITEVARPDLR--GALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIP-SPVWL  149 (420)
Q Consensus        77 l~G~~~~~~~~~~~~~~i~e~~~~~~r--~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~-~~~~l  149 (420)
                      +.|...+ ...+....++.|+.++++|  +...++.+.+.++|..++|.+++.+    |||..|++.++..++. .+.++
T Consensus       114 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  192 (393)
T PRK15011        114 FLSSFGS-TANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL  192 (393)
T ss_pred             HHHHHHH-hhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence            5554455 5556678888888876655  3455788888889999998888765    9999999888766554 12222


Q ss_pred             eecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHh
Q psy6665         150 LNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFY  229 (420)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (420)
                      ..++..++..           ..+        +    +   .+   ...+ +++.   .......... ..........+
T Consensus       193 ~~~~~~~~~~-----------~~~--------~----~---~~---~~~~-~~~~---~~~~~~~~~~-~~~~~~~~~~~  238 (393)
T PRK15011        193 FLPSMRKELP-----------LAT--------G----T---LE---APRR-NRRD---TLLLFVICTL-MWGTNSLYIIN  238 (393)
T ss_pred             hcCccCCCCc-----------ccc--------c----c---cc---cccc-cccc---HHHHHHHHHH-HHHHHHHHHHH
Confidence            2222111100           000        0    0   00   0000 1111   1111111111 11123445567


Q ss_pred             HHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHHHHHHH
Q psy6665         230 AVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILFYVAIS  296 (420)
Q Consensus       230 ~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~  296 (420)
                      .|.++++. |+ +.+.+.......+..+++.++.|+++||++||+.+..+...           ................
T Consensus       239 ~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~  318 (393)
T PRK15011        239 MPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIY  318 (393)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            88888664 77 55666666666777888999999999999999877654333           1111111111111111


Q ss_pred             hhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhcccc
Q psy6665         297 VIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFLPE  373 (420)
Q Consensus       297 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (420)
                      .....+....+..|.+|+ .++++.++.+...++|..++|.+.|.+.++.| +...+.+.+++.+++.+..+ ..||
T Consensus       319 ~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g-~~~~~~~~~~~~~~~~~~~~-~~~~  392 (393)
T PRK15011        319 IGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWN-YHAVFWFALVMIIATLFCLL-RIKD  392 (393)
T ss_pred             HHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHH-hhcC
Confidence            111123344667888885 58999999999999999999999999999888 77777777766666665553 4443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.93  E-value=9.8e-24  Score=197.58  Aligned_cols=341  Identities=11%  Similarity=0.005  Sum_probs=197.7

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh-HHHHHhhccccccchhHHHHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY-TQLIMTGQIEKSLIPVFCILFYV   78 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~l~   78 (420)
                      +|.+..+.....+++.++..+++++ |+++||+|||++++++..+.+++....... +..+...+       .+....+.
T Consensus        41 ~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~  113 (420)
T PRK09528         41 NGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYN-------ILLGAIVG  113 (420)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence            3667788899999999999999999 999999999999988766665544322211 11111111       00000222


Q ss_pred             HHHhhcccchhhhhhhhhccC--ccchhhhHhHHHHHHHHHHHHHHHHhhhh---hhHHHHHhHhhhccccccceeeecC
Q psy6665          79 AISVIAMGPSPAIVYITEVAR--PDLRGALICIGPSITSLGMVIVYALGAVL---HWRTVAWLSLAYILIPSPVWLLNKG  153 (420)
Q Consensus        79 G~~~~~~~~~~~~~~i~e~~~--~~~r~~~~~~~~~~~~lG~~~~~~~~~~~---~wr~~f~~~~~~~~~~~~~~l~~~~  153 (420)
                      ++..+ .........+.++.+  ++++++.++......++|..+++.+++.+   +|+.+|++.+++.++....++..++
T Consensus       114 ~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~  192 (420)
T PRK09528        114 GIYLG-FGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVLLFFAKP  192 (420)
T ss_pred             HHHhh-hhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhcccc
Confidence            33222 222112222333332  34567788888888888999998888876   8999999888776554222222222


Q ss_pred             cHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhHHHH
Q psy6665         154 RANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQF  233 (420)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (420)
                      ++++..+.    ++ +   +        ++ ++++...++..+.++ ++..+...+.......     .......+.|.+
T Consensus       193 ~~~~~~~~----~~-~---~--------~~-~~~~~~~~~~~~~l~-~~~~~~l~l~~~~~~~-----~~~~~~~~~~~~  249 (420)
T PRK09528        193 DAPSTAKV----AN-A---L--------GA-NASAVSLKDALALLK-LPKFWFLVLYVIGVAC-----FYDVFDQQFPNF  249 (420)
T ss_pred             cccchhhh----cc-c---h--------hc-ccccccHHHHHHHcc-CCCeEeehHHHHHHHH-----HHHHHHHHHHHH
Confidence            21111000    00 0   0        00 000001112223333 3333322221111111     112222334444


Q ss_pred             HHhh----CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHHHHHHHh
Q psy6665         234 LEDM----GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILFYVAISV  297 (420)
Q Consensus       234 ~~~~----g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~  297 (420)
                      +.+.    +. ....+.......+...++.++.|++.||+++|+.+..+..+           .+...+.......+...
T Consensus       250 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~  329 (420)
T PRK09528        250 FASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEV  329 (420)
T ss_pred             HHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            4332    33 34556777777888899999999999999999887665554           22222222222222111


Q ss_pred             hchhhHHHHHhcccCChhhhhhhHHH-HHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhcccc
Q psy6665         298 IGMLSIPWTMTAEIFPLEIRGIAQGL-TFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFLPE  373 (420)
Q Consensus       298 ~~~~~~~~~~~~~~~p~~~r~~~~g~-~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (420)
                      ....+....+..|.+|++.+++..+. .+....+|..++|.+.|++.|..| +...+...+++.++..++.+...++
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G-~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        330 PFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG-FQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             HHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHHHHHHHhcC
Confidence            11223344777888999999888766 577788999999999999999999 8888988888877777666555443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.93  E-value=1.7e-23  Score=198.49  Aligned_cols=306  Identities=17%  Similarity=0.166  Sum_probs=202.4

Q ss_pred             HHHHH-HHHHHhh-----cchhH-HHHhhHHHHHHHHHHHHh-----HHHHHhhccccccchhHHHHHHHHHHhhcccch
Q psy6665          21 FGLLT-SQLLRTY-----GRRSL-TMFSGLGMAVCMTTSGYY-----TQLIMTGQIEKSLIPVFCILFYVAISVIAMGPS   88 (420)
Q Consensus        21 ~~~~~-g~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~~-----~~~~~~~r~~~~~~~~~~~~~l~G~~~~~~~~~   88 (420)
                      ++.++ |+++||+     |||+. ++.+.++.+++..++++.     ++.+.+.+            ++.|++.+ ...+
T Consensus        60 ~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~------------~l~~~~~a-~~~i  126 (491)
T PRK11010         60 VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALA------------VVIAFCSA-SQDI  126 (491)
T ss_pred             HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH------------HHHHHHHH-HHHH
Confidence            56788 9999999     99885 667777777777777664     66777788            99999999 7778


Q ss_pred             hhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh-----hhHHHHHhHhhhccccccceeeecCcHHHHHHHHH
Q psy6665          89 PAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL-----HWRTVAWLSLAYILIPSPVWLLNKGRANQALKSLK  163 (420)
Q Consensus        89 ~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~-----~wr~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  163 (420)
                      ...+++.|++|+++|+++.++...+..+|.++++.++..+     |||..|++.+++.++.....+..+++.++.     
T Consensus       127 ~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~-----  201 (491)
T PRK11010        127 VFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDTI-----  201 (491)
T ss_pred             HHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc-----
Confidence            7999999999999999999999999999998888665543     899999998877665411111112211100     


Q ss_pred             HHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhHHHHHHh-hCC-cc
Q psy6665         164 YLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLED-MGS-RM  241 (420)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~-~~  241 (420)
                               +        ++.+.+++...++++.++ ++..+ .......+..    ........+.+.++.+ .|+ ..
T Consensus       202 ---------~--------~~~~~~~~~~~~l~~~~~-~~~~~-~~ll~~~l~~----~~~~~~~~~~~~~l~~~~G~s~~  258 (491)
T PRK11010        202 ---------P--------VPKTLEQAVVAPLRDFFG-RNNAW-LILLLIVLYK----LGDAFAMSLTTTFLIRGVGFDAG  258 (491)
T ss_pred             ---------c--------cccchhhhHHHHHHHHHc-CcCHH-HHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCCHH
Confidence                     0        000000001123344443 22211 1111111111    1223344556666644 488 66


Q ss_pred             hHHHHH-HHHHHHHHHHHHHHHHhhhccCchhhHhhhccc---h-----------hHHHHHH-HHHH-HHHHhhchhhHH
Q psy6665         242 NVYLAT-VLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE---K-----------SLIPVFC-ILFY-VAISVIGMLSIP  304 (420)
Q Consensus       242 ~~~~~~-~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~---~-----------~~~~~~~-~~~~-~~~~~~~~~~~~  304 (420)
                      +.+... ....++.+++.+++|+++||+++|+.+..+..+   .           +....+. ..++ ....+.+. +..
T Consensus       259 ~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~-~~~  337 (491)
T PRK11010        259 EVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGT-AAF  337 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH-HHH
Confidence            666665 455678999999999999999988776654432   0           0000111 1111 11122222 344


Q ss_pred             HHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhh
Q psy6665         305 WTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYI  369 (420)
Q Consensus       305 ~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  369 (420)
                      +++..+..|++.+++..|+.+....++..+++.+.|.+.|..| +...|.+.+++++.+.+....
T Consensus       338 ~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G-~~~~f~~~~~~~l~~l~~~~~  401 (491)
T PRK11010        338 VALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHG-WPTFYLFSVAAAVPGLLLLLV  401 (491)
T ss_pred             HHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHH
Confidence            6788889999999999999999999999999999999999998 888888888888777666643

>KOG2533|consensus

Probab=99.92  E-value=7.3e-24  Score=196.32  Aligned_cols=327  Identities=13%  Similarity=-0.001  Sum_probs=215.1

Q ss_pred             CccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHHHH
Q psy6665           3 SRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFYVA   79 (420)
Q Consensus         3 ~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l~G   79 (420)
                      ...++++...+++.++++++.++ |.|.||++-.+.+....+++++..++....  ++.+++.|            ++.|
T Consensus        78 ~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr------------~llG  145 (495)
T KOG2533|consen   78 LVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALR------------FLLG  145 (495)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH------------HHHH
Confidence            34567889999999999999999 999999998888888888888887666656  99999999            9999


Q ss_pred             HHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----------hhHHHHHhHhhhcccc-ccce
Q psy6665          80 ISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----------HWRTVAWLSLAYILIP-SPVW  148 (420)
Q Consensus        80 ~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----------~wr~~f~~~~~~~~~~-~~~~  148 (420)
                      +.++ ...|....+++.|+.+++|++.++++.+..++|.++|++++..+          ||||.|++.++++++. ...+
T Consensus       146 l~es-~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f  224 (495)
T KOG2533|consen  146 LFES-GGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVF  224 (495)
T ss_pred             HHhc-ccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEE
Confidence            9999 77787999999999999999999999999999999999988772          8999999999988877 3344


Q ss_pred             eeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHH
Q psy6665         149 LLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIF  228 (420)
Q Consensus       149 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (420)
                      +..++.++++.     ...++ +.+...++.+ ++..+..+++.++.++.   +.++.+.++...+..++.....+.+.+
T Consensus       225 ~~lp~~P~~~~-----fl~~~-ek~~~~~~~~-~~~~~~~~~~~~~~~~~---~a~~dp~vw~~~l~~~~~~lv~~~~~~  294 (495)
T KOG2533|consen  225 FFLPDNPSKAW-----FLTDE-EKELVVERLR-ESPSGGIENKFKWKGFK---EALKDPGVWPFSLCYFFLKLVNYGFSY  294 (495)
T ss_pred             EEecCChhhcc-----ccchH-HHHHHHHHHH-hccCCCcccccCHHHHH---HHHhchhHHHHHHHHHHHhhccccHHH
Confidence            44555444320     00000 0000000000 00001101112222222   233355556666666666656888999


Q ss_pred             hHHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhc----cCchhhHhhhccc-----------hhHHHHHHHHH
Q psy6665         229 YAVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRT----YGRRSLTMFSQIE-----------KSLIPVFCILF  291 (420)
Q Consensus       229 ~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~~~~~~~~~-----------~~~~~~~~~~~  291 (420)
                      |+|.++++. |+ ..++..+.....++++++.+++|+++||    ..+|........+           ..........+
T Consensus       295 ~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~  374 (495)
T KOG2533|consen  295 WLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAF  374 (495)
T ss_pred             HHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHH
Confidence            999999983 57 7788889999999999999999999999    4455444444333           10011111111


Q ss_pred             HHHHHh-hchhhHHHHHhcccCChhh-hhhhHHHHHHHHHHHHHHHHHHhHH-HHHhcCcchHHH
Q psy6665         292 YVAISV-IGMLSIPWTMTAEIFPLEI-RGIAQGLTFCLAHILMFFALQYYPW-FKDSVGGSAMVQ  353 (420)
Q Consensus       292 ~~~~~~-~~~~~~~~~~~~~~~p~~~-r~~~~g~~~~~~~~~~~~~~~~~g~-l~~~~g~~~~~~  353 (420)
                      +.+.+. ....+.......+....+. +-+..+........++.++|.+... ...+++ +...+
T Consensus       375 ~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~-~~~~f  438 (495)
T KOG2533|consen  375 LIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYG-WGAVF  438 (495)
T ss_pred             HhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchh-hhhHH
Confidence            222221 1223444466666655444 3444555555566666666555432 233334 34444

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.92  E-value=3.2e-22  Score=184.81  Aligned_cols=317  Identities=12%  Similarity=0.014  Sum_probs=210.8

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHH----HHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLT----MFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFC   73 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l----~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~   73 (420)
                      +|.|..+.....+.+.+...+++++ |+++||+|||+..    ..+..+..+  ..+..+  ++.+++.|          
T Consensus        34 ~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~----------  101 (382)
T TIGR00902        34 IGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIAI----------  101 (382)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHH----------
Confidence            4678888999999999999999999 9999999985433    222222222  122233  88888899          


Q ss_pred             HHHHHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccccccee
Q psy6665          74 ILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIPSPVWL  149 (420)
Q Consensus        74 ~~~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~~~~~l  149 (420)
                        +++|.+.+ ...+...++..|+  +++|++..+......++|..++|.+++.+    |||..|++......+....++
T Consensus       102 --~l~~~~~~-~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~~~~  176 (382)
T TIGR00902       102 --GLFALFFS-AGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLIGFL  176 (382)
T ss_pred             --HHHHHHHc-cchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH
Confidence              99999998 6666677777664  47789999999999999999999887776    899998877654332211111


Q ss_pred             eecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHh
Q psy6665         150 LNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFY  229 (420)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (420)
                      ..++.+++.              +.       +  +++.++..+.++.++ ++.     ++......+...........+
T Consensus       177 ~~~~~~~~~--------------~~-------~--~~~~~~~~~~~~~l~-~~~-----~~~~l~~~~l~~~~~~~~~~~  227 (382)
T TIGR00902       177 IKPTIPPKD--------------AI-------P--EDESQGDSAFIALLK-NPM-----NLRFLAAVCLIQGAHAAYYGF  227 (382)
T ss_pred             cCCCCCCCc--------------cc-------c--ccccccchhHHHHHc-ChH-----HHHHHHHHHHHHHHHHHHHHH
Confidence            111100000              00       0  000011112333333 222     222222222222345567778


Q ss_pred             HHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHHHHHHHh
Q psy6665         230 AVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILFYVAISV  297 (420)
Q Consensus       230 ~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~  297 (420)
                      .|.++++.|. +...+.......+.++++.++.+++.||+++|+.+..+...           ++...+.....+.+...
T Consensus       228 ~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~  307 (382)
T TIGR00902       228 SAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTF  307 (382)
T ss_pred             HHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Confidence            8999888888 77788888888899999999999999999999998877776           22222222222322222


Q ss_pred             hchhhHHHHHhcccCChhhhhhhHHHHHH-HHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHH
Q psy6665         298 IGMLSIPWTMTAEIFPLEIRGIAQGLTFC-LAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVY  366 (420)
Q Consensus       298 ~~~~~~~~~~~~~~~p~~~r~~~~g~~~~-~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  366 (420)
                      ....+....++.+. |++.|+++.++++. ...+|..++|.+.|++.|+.| . ..++..+++.+++.++
T Consensus       308 ~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g-~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       308 AVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG-A-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHHHH
Confidence            23345556788888 99999999999874 566899999999999999998 4 6677777777665544

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.91  E-value=1.3e-22  Score=213.47  Aligned_cols=320  Identities=13%  Similarity=0.005  Sum_probs=200.1

Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh-----HHHHHhhccccccchhHHHHHHHHHH
Q psy6665           8 YLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY-----TQLIMTGQIEKSLIPVFCILFYVAIS   81 (420)
Q Consensus         8 ~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~r~~~~~~~~~~~~~l~G~~   81 (420)
                      ..+..+++.++.++++++ |+++||+|||++++.+.++..++.+++.++     ++.+++.|            +++|++
T Consensus        49 ~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r------------~l~G~~  116 (1146)
T PRK08633         49 TAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVT------------FLLGAQ  116 (1146)
T ss_pred             HHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH------------HHHHHH
Confidence            466678889999999999 999999999999999887766666554433     78899999            999999


Q ss_pred             hhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh-h------------hHHHHHhHhhhcc-ccccc
Q psy6665          82 VIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL-H------------WRTVAWLSLAYIL-IPSPV  147 (420)
Q Consensus        82 ~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~-~------------wr~~f~~~~~~~~-~~~~~  147 (420)
                      .+ ...+...+++.|++|+++|++++++...+.++|.++++.+++.+ .            |++.+.+..+... +....
T Consensus       117 ~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (1146)
T PRK08633        117 SA-IYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIF  195 (1146)
T ss_pred             HH-hhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHH
Confidence            99 88888999999999999999999999999999999999888765 1            2333333222221 11001


Q ss_pred             eeeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHH
Q psy6665         148 WLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITI  227 (420)
Q Consensus       148 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (420)
                      .+..++..++..           ...+      .............++.+++ ++.     ++...+..+..........
T Consensus       196 ~~~~~~~~~~~~-----------~~~~------~~~~~~~~~~~~~~~~l~~-~~~-----~~~~~~~~~~~~~~~~~~~  252 (1146)
T PRK08633        196 AYRLPKVPAAAP-----------EVFD------KKKYLFPKLLWRNLKLLRS-DRV-----LWLAIIGLSYFWFISQLAQ  252 (1146)
T ss_pred             HhcCcCCCCCCc-----------cccc------ccccccHHHHHHHHHHHhc-CcH-----HHHHHHHHHHHHHHHHHHH
Confidence            111111100000           0000      0000000001122223322 221     1111111111111234456


Q ss_pred             HhHHHHHHhh-CC-cc-hHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHHHH
Q psy6665         228 FYAVQFLEDM-GS-RM-NVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILFYV  293 (420)
Q Consensus       228 ~~~~~~~~~~-g~-~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~  293 (420)
                      .+.|.++.+. |. .. ..+.......++.+++.++.+++.||+++++.+.++.++           .+....++..++.
T Consensus       253 ~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (1146)
T PRK08633        253 ANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLF  332 (1146)
T ss_pred             HhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            6777777664 77 55 677888888899999999999999999988766555443           1111122222222


Q ss_pred             HHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcC-cchHHHHHHHHHHHHHH
Q psy6665         294 AISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVG-GSAMVQWFFALISVISI  364 (420)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~  364 (420)
                      +.+.....+...+++.+..|++.||+++|+.+.+..++..+++.+.+.+.. .+ +....+.+.+.+.++..
T Consensus       333 g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~  403 (1146)
T PRK08633        333 GFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG-LGLSPAGLFYLIALVTLIGT  403 (1146)
T ss_pred             HHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHH
Confidence            222222344556888899999999999999999999999888877666544 33 13334444444444333

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.91  E-value=9.8e-22  Score=182.64  Aligned_cols=299  Identities=11%  Similarity=0.018  Sum_probs=199.8

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFY   77 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l   77 (420)
                      +|.|.++.....+.+.++..++.++ |+++||+|||+++..+..+..++.+.+.+.  ++.+++.|            ++
T Consensus        38 ~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------~~  105 (394)
T PRK11652         38 LNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAAS------------AI  105 (394)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHH------------HH
Confidence            3567788888999999999999999 999999999999999999999999988877  88899999            99


Q ss_pred             HHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccc-ccceeeec
Q psy6665          78 VAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIP-SPVWLLNK  152 (420)
Q Consensus        78 ~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~-~~~~l~~~  152 (420)
                      .|++.+ ...+....+..|++++++|+++.++.+.+..+|..++|.+++.+    +||+.|++.++..++. ...++..+
T Consensus       106 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  184 (394)
T PRK11652        106 QGLGTG-VGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMP  184 (394)
T ss_pred             HHhhhh-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999998 66676788899999999999999999999999988888887765    8999999887665543 11111111


Q ss_pred             CcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhHHH
Q psy6665         153 GRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQ  232 (420)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (420)
                      ++.++.                       +   ++++.+.++++.++ ++..+... ...    +...........+.+.
T Consensus       185 ~~~~~~-----------------------~---~~~~~~~~~~~~~~-~~~~~~~~-~~~----~~~~~~~~~~~~~~~~  232 (394)
T PRK11652        185 ETRPAD-----------------------A---RRTRVLASYRTLLS-NRRFNCYL-LML----IGTLAGIAVFEACSGV  232 (394)
T ss_pred             ccCccc-----------------------c---chhHHHHHHHHHHc-ChHHHHHH-HHH----HHHHHHHHHHHHhChH
Confidence            111000                       0   00001222333332 22222111 111    1111123334455666


Q ss_pred             HHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc--------h-----hHHHHHHHHHHHHHHh
Q psy6665         233 FLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE--------K-----SLIPVFCILFYVAISV  297 (420)
Q Consensus       233 ~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~--------~-----~~~~~~~~~~~~~~~~  297 (420)
                      ++++. |. +.+.+.......++.+++..+.+++.||.+++.........        .     .............+.+
T Consensus       233 ~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  312 (394)
T PRK11652        233 LMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFG  312 (394)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            77763 77 55666666777778888888889999988744332211111        0     0111111111112222


Q ss_pred             h-chhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHh
Q psy6665         298 I-GMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDS  345 (420)
Q Consensus       298 ~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~  345 (420)
                      . ...+...++..|.+| ++++++.++.+....+|+.+++.+.+.+.+.
T Consensus       313 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~  360 (394)
T PRK11652        313 AGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT  360 (394)
T ss_pred             HHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            2 235666677788887 5689999999999999999999988876554

>TIGR00889 2A0110 nucleoside transporter

Probab=99.91  E-value=5.3e-22  Score=184.84  Aligned_cols=329  Identities=11%  Similarity=0.018  Sum_probs=203.6

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcc-hhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHH
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGR-RSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFY   77 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l   77 (420)
                      |.+..+.....+...++.++++++ |+++||+|| |+++.++.++.+++..+..+.  ++.+++.|            ++
T Consensus        34 g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~l  101 (418)
T TIGR00889        34 HFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVL------------LA  101 (418)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH------------HH
Confidence            567788899999999999999999 999999965 778888888888887777766  77888889            88


Q ss_pred             HHHHhhcccchhhhhhhh--------hccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhccccc
Q psy6665          78 VAISVIAMGPSPAIVYIT--------EVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIPS  145 (420)
Q Consensus        78 ~G~~~~~~~~~~~~~~i~--------e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~~  145 (420)
                      .|++.+ ...+...+...        |......|.+..+      .+|..+++.+++.+    .|+ +|++.++..++..
T Consensus       102 ~~~~~~-~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~  173 (418)
T TIGR00889       102 NSLAYM-PTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLG  173 (418)
T ss_pred             HHHHHc-cHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHH
Confidence            888776 55443444322        2233334444444      35566666666554    344 3445544444331


Q ss_pred             cceeeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhh
Q psy6665         146 PVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYI  225 (420)
Q Consensus       146 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (420)
                      ...+..++.+++.+           +          ++....+..+.+.++.++ ++.++......++...     ....
T Consensus       174 ~~~~~~~e~~~~~~-----------~----------~~~~~~~~~~~~~~~~~k-~~~~~~~~~~~~~~~~-----~~~~  226 (418)
T TIGR00889       174 VFALTLPDIPVAKS-----------T----------AKMSIKVMLGLDAFILFK-NKRMAIFFFFSMLLGA-----PLQI  226 (418)
T ss_pred             HHHhcCCCCCCCcc-----------c----------cccCHHHHhhhhHHHHhc-CCCeeeHHHHHHHHHh-----HHHH
Confidence            11111111110000           0          000000000112223333 3333322222121111     1223


Q ss_pred             HHHhHHHHHHhhCC-c--------chHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc---------h--h-H-
Q psy6665         226 TIFYAVQFLEDMGS-R--------MNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE---------K--S-L-  283 (420)
Q Consensus       226 ~~~~~~~~~~~~g~-~--------~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~---------~--~-~-  283 (420)
                      ...+.+.+.++.|. +        ...+.......+..+++.+..++++||+|+|+.+..+.++         .  . . 
T Consensus       227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~  306 (418)
T TIGR00889       227 TNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYF  306 (418)
T ss_pred             HHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchh
Confidence            44566777766553 2        4457777888889999999999999999999998877665         0  0 1 


Q ss_pred             -HHHHH-HHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHH-HHHHHHHHHHHHHhHHHHHhcCc-----chHHHHH
Q psy6665         284 -IPVFC-ILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTF-CLAHILMFFALQYYPWFKDSVGG-----SAMVQWF  355 (420)
Q Consensus       284 -~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~-~~~~~~~~~~~~~~g~l~~~~g~-----~~~~~~~  355 (420)
                       ..... ..++.+.......+....++.|.+|++.|+++.|+.+ ....+|..++|.+.|.+.++.|+     |...|.+
T Consensus       307 ~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~  386 (418)
T TIGR00889       307 GYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLF  386 (418)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHH
Confidence             01111 1111222112234555678899999999999999997 56789999999999999998652     6678888


Q ss_pred             HHHHHHHHHHHhhhccccCCCC
Q psy6665         356 FALISVISIVYVYIFLPETHGR  377 (420)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~  377 (420)
                      .+++.++.++..+++.+|+++.
T Consensus       387 ~~~~~~i~~~l~~~~~~~~~~~  408 (418)
T TIGR00889       387 FAGYIAILAVLFMIFFKYSHNA  408 (418)
T ss_pred             HHHHHHHHHHHHHHHhCCcccC
Confidence            8888888888877788776443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.91  E-value=1.8e-22  Score=211.69  Aligned_cols=321  Identities=11%  Similarity=0.010  Sum_probs=205.0

Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHH---hhHHHHHHHHHHHH-h-HHHHHhhccccccchhHHHHHHHHHH
Q psy6665           8 YLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMF---SGLGMAVCMTTSGY-Y-TQLIMTGQIEKSLIPVFCILFYVAIS   81 (420)
Q Consensus         8 ~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~---~~~~~~~~~~~~~~-~-~~~~~~~r~~~~~~~~~~~~~l~G~~   81 (420)
                      ..++.+++.+.+++.+++ |+++||+|||+++..   ..+...+..+.+.. . ++++++.|            +++|++
T Consensus        54 ~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~------------~l~gi~  121 (1140)
T PRK06814         54 VTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAAL------------FLMGIH  121 (1140)
T ss_pred             HHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH------------HHHHHH
Confidence            456677889999999999 999999999997643   22222222222223 2 88999999            999999


Q ss_pred             hhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhccccccceeeecCcHHH
Q psy6665          82 VIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIPSPVWLLNKGRANQ  157 (420)
Q Consensus        82 ~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~~~~~l~~~~~~~~  157 (420)
                      .+ ...+...+++.|++|+++|++++++.+++.++|.++||.+++.+    +|++.|+..++..++....++..+++.++
T Consensus       122 ~a-~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (1140)
T PRK06814        122 SA-LFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNA  200 (1140)
T ss_pred             HH-hhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence            99 88888999999999999999999999999999999999999887    89998854444433321111111111100


Q ss_pred             HHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhHHHHHHhh
Q psy6665         158 ALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDM  237 (420)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (420)
                      ..           ...        .+....++....++...+ ++     .++...+..+........+..+.|.|+++.
T Consensus       201 ~~-----------~~~--------~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  255 (1140)
T PRK06814        201 AP-----------DLK--------IDRNIIRSTITLLKYAKA-DK-----RIWLAILGISWFWLVGAVVLSQLPLLAKET  255 (1140)
T ss_pred             CC-----------CCe--------eccchHHHHHHHHHHHhc-Cc-----hHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            00           000        000000000112222222 22     222222222222222445667889998875


Q ss_pred             -CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc---------h---------------------hH-H
Q psy6665         238 -GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE---------K---------------------SL-I  284 (420)
Q Consensus       238 -g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~---------~---------------------~~-~  284 (420)
                       |. +...+......+++.+++.++.+++.|+..+++.+..+.++         .                     .. +
T Consensus       256 ~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (1140)
T PRK06814        256 LGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGW  335 (1140)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccH
Confidence             77 77788888999999999999999999887665543332222         0                     00 0


Q ss_pred             HHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHH
Q psy6665         285 PVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISI  364 (420)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  364 (420)
                      .+.+..++.+.+.....+...+++.+..|++.+|+++|+.+....++..+++.+.+.+.+...++...+++.+.+.++.+
T Consensus       336 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~  415 (1140)
T PRK06814        336 RILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANLIVA  415 (1140)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence            01111122222222234455688999999999999999999999999999999999987544325555555554444443


Q ss_pred             HH
Q psy6665         365 VY  366 (420)
Q Consensus       365 ~~  366 (420)
                      +.
T Consensus       416 ~~  417 (1140)
T PRK06814        416 IL  417 (1140)
T ss_pred             HH
Confidence            33

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.91  E-value=7.9e-22  Score=185.69  Aligned_cols=323  Identities=16%  Similarity=0.080  Sum_probs=216.9

Q ss_pred             ccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh-------HHHHHhhccccccchhHHHH
Q psy6665           4 RMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY-------TQLIMTGQIEKSLIPVFCIL   75 (420)
Q Consensus         4 ~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-------~~~~~~~r~~~~~~~~~~~~   75 (420)
                      |......+.+...+-.++.+++ |.++||+.||++++.+.++.++..+..++.       .+.+++.-            
T Consensus        43 S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~------------  110 (524)
T PF05977_consen   43 SPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILT------------  110 (524)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHH------------
Confidence            4445566667778888888888 999999999999999998887766555433       56666777            


Q ss_pred             HHHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhccccccceeee
Q psy6665          76 FYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIPSPVWLLN  151 (420)
Q Consensus        76 ~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~~~~~l~~  151 (420)
                      ++.|++.+ +..+...+++.|..|+++...+.++.+...++..++||.+++.+    |-.+.|.+.++..++.....+..
T Consensus       111 fl~g~~~a-~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~  189 (524)
T PF05977_consen  111 FLLGIGSA-FFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRW  189 (524)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999 99999999999999999999999999999999999999888876    66777777665544430000000


Q ss_pred             cCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhHH
Q psy6665         152 KGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAV  231 (420)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (420)
                      +.+.++.            +.+.       +..  .++-++.++...+ ++..+ ..+....+..+    ........+|
T Consensus       190 ~~~~~~~------------~~~~-------e~~--~~~l~~G~ryv~~-~~~l~-~~l~~~~~~~l----~~~a~~aLlP  242 (524)
T PF05977_consen  190 KPPPPPS------------SLPR-------ERF--FSALREGLRYVRS-SPPLR-SVLLRSFLFNL----FASAVWALLP  242 (524)
T ss_pred             ccccccc------------ccch-------hhh--hhhHHHHHHHHhc-chHHH-HHHHHHHHHHH----hhhHHHHhhh
Confidence            1000000            0000       000  0001222222221 22222 22221111111    1233445678


Q ss_pred             HHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHHHHHHHhh
Q psy6665         232 QFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILFYVAISVI  298 (420)
Q Consensus       232 ~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~  298 (420)
                      .+.++. |. +...+.+....+++.++|+++.+.+.+|+++++.+..+.+.           .+.+......+..+....
T Consensus       243 l~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~  322 (524)
T PF05977_consen  243 LFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWI  322 (524)
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            887665 66 77778889999999999999999999999988776665554           222222222222222222


Q ss_pred             chhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHh
Q psy6665         299 GMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYV  367 (420)
Q Consensus       299 ~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  367 (420)
                      .......+...+..|++.||++++++.+....+..+|..+.|.+.+..| ....+.+.++..+++.++.
T Consensus       323 ~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g-~~~al~~a~~~lll~~~~~  390 (524)
T PF05977_consen  323 IANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG-VRTALLIAGAALLLSALIA  390 (524)
T ss_pred             HHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHH
Confidence            3344455788899999999999999999999999999999999999999 7777766665555555544

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.91  E-value=5.2e-22  Score=184.50  Aligned_cols=329  Identities=12%  Similarity=0.084  Sum_probs=200.8

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh----------HHHHHhhccccccc
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY----------TQLIMTGQIEKSLI   69 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----------~~~~~~~r~~~~~~   69 (420)
                      +|.+..+.....+++.++..+++++ |+++||+|||+.++.+....+++.......          ....++.+      
T Consensus        33 ~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  106 (396)
T TIGR00882        33 NGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGG------  106 (396)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH------
Confidence            3567788888999999999999999 999999999999998777666544332211          22234456      


Q ss_pred             hhHHHHHHHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh---hhHHHHHhHhhhcccccc
Q psy6665          70 PVFCILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL---HWRTVAWLSLAYILIPSP  146 (420)
Q Consensus        70 ~~~~~~~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~---~wr~~f~~~~~~~~~~~~  146 (420)
                            ++.|++.+ ...+....+..|..+  +++...+......++|..+++.+++.+   +||.+|++.+++.++...
T Consensus       107 ------~~~g~~~~-~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~  177 (396)
T TIGR00882       107 ------LYLGFVFS-AGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILML  177 (396)
T ss_pred             ------HHHHHHhc-cchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHH
Confidence                  78888888 666656666666532  334566777777788888888887765   899999988877766511


Q ss_pred             ceeeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhH
Q psy6665         147 VWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYIT  226 (420)
Q Consensus       147 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (420)
                      .++..+++.++.++ ..   +          +   .+.++++++.++..+.++ ++..+. .....   ... .......
T Consensus       178 ~~~~~~~~~~~~~~-~~---~----------~---~~~~~~~~~~~~~~~~l~-~~~~~~-~~l~~---~~~-~~~~~~~  234 (396)
T TIGR00882       178 LLMFAKPKAPSSAT-VA---N----------A---LGANASAFSLKLALELFR-QRKFWM-FVLYV---VGV-ACVYDVF  234 (396)
T ss_pred             HHHHhCCCCchhhh-hh---c----------c---cccccCCCCHHHHHHHHc-CCcHHH-HHHHH---HHH-HHHHHHH
Confidence            11111111111000 00   0          0   000001111223344443 332221 11111   111 1112233


Q ss_pred             HHhHHHHHHhh----CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHH
Q psy6665         227 IFYAVQFLEDM----GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCIL  290 (420)
Q Consensus       227 ~~~~~~~~~~~----g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~  290 (420)
                      ..+.+.|+++.    +. ....+.......+...++.+..+++.||+++|+.+..+..+           .+........
T Consensus       235 ~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~  314 (396)
T TIGR00882       235 DQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILK  314 (396)
T ss_pred             HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence            33455555443    33 33456667777888889999999999999999988776654           1111111111


Q ss_pred             HHHHHHhhchhhHHHHHhcccCChhhhhhhHHH-HHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhh
Q psy6665         291 FYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGL-TFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVY  368 (420)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~-~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  368 (420)
                      ...+............+..+..|++.+++..+. .+....+|+.++|.+.|++.|..| +...|.+.+++.++..++..
T Consensus       315 ~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G-~~~~f~~~~~~~~i~~~~~~  392 (396)
T TIGR00882       315 MLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG-FQGAYLVLGCIVLLFTLISV  392 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc-cHHHHHHHHHHHHHHHHHHH
Confidence            111111111112233456667788888887766 678899999999999999999999 88999998888887777654

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.91  E-value=2.6e-22  Score=189.33  Aligned_cols=306  Identities=12%  Similarity=0.091  Sum_probs=191.3

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHh----hcc-hhHHHHhhHHHHHHHHHHHHh--------HHHHHhhcccc
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRT----YGR-RSLTMFSGLGMAVCMTTSGYY--------TQLIMTGQIEK   66 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr----~Gr-r~~l~~~~~~~~~~~~~~~~~--------~~~~~~~r~~~   66 (420)
                      +|.+........++..+..++..++ |+++||    +|| |+.++.+....+++.+++...        ...+++.+   
T Consensus        30 ~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---  106 (437)
T TIGR00792        30 LGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITY---  106 (437)
T ss_pred             cCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHH---
Confidence            3667788889999999999999999 999997    787 456777888888777766543        12334444   


Q ss_pred             ccchhHHHHHHHHHHhhcccchhhhhhhhhcc-CccchhhhHhHHHHHHHHHHHHHHHHhh-----------hhhhHHHH
Q psy6665          67 SLIPVFCILFYVAISVIAMGPSPAIVYITEVA-RPDLRGALICIGPSITSLGMVIVYALGA-----------VLHWRTVA  134 (420)
Q Consensus        67 ~~~~~~~~~~l~G~~~~~~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~lG~~~~~~~~~-----------~~~wr~~f  134 (420)
                               ++.+++.+ ...++..++..|.. ++++|++..++.+.+..+|..+++.+..           ..+||+.+
T Consensus       107 ---------~~~~~~~~-~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~  176 (437)
T TIGR00792       107 ---------ILLGLFYS-FVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFA  176 (437)
T ss_pred             ---------HHHHHHHH-hhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHH
Confidence                     88888888 66666788899987 4688999999988888887666544322           22799999


Q ss_pred             HhHhhhcccc-ccceeeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHH
Q psy6665         135 WLSLAYILIP-SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITV  213 (420)
Q Consensus       135 ~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (420)
                      ++.+++.++. ...++..+++.++.              +        ++.+++.+.++..+..++ ++.++.     ..
T Consensus       177 ~i~~~l~~~~~~~~~~~~~e~~~~~--------------~--------~~~~~~~~~~~~~~~l~~-~~~~~~-----~~  228 (437)
T TIGR00792       177 LVLALIGVVSLIICFFGTKERYSEI--------------P--------KNIEKKLSLKQIFKALFK-NDQLLI-----LC  228 (437)
T ss_pred             HHHHHHHHHHHHHHHcCCEecCCCC--------------C--------cccccCCCHHHHHHHHhC-CHHHHH-----HH
Confidence            8888777665 11122222211100              0        000000011122233332 222211     11


Q ss_pred             HHHHHHhcchhhHHHhHHHHHHhh-CCcchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------h
Q psy6665         214 LFALQQLAGIYITIFYAVQFLEDM-GSRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------K  281 (420)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~  281 (420)
                      ...+...........+.+.+.+.. +.+...+.......+..+++.++.++++||+|+|+.+..+..+           .
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~  308 (437)
T TIGR00792       229 LAYLFYNLAFNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG  308 (437)
T ss_pred             HHHHHHHHHHHHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc
Confidence            111111112233333344444432 3233445556667888999999999999999999988777554           1


Q ss_pred             -hHHHHHHHHHHHHHHhhchhhHHHHHhcccCC-------hhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcC
Q psy6665         282 -SLIPVFCILFYVAISVIGMLSIPWTMTAEIFP-------LEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVG  347 (420)
Q Consensus       282 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g  347 (420)
                       +...........+.......+..+++.+|..|       ++.+|.+.|+.+....++..+++.+.|.+.+..|
T Consensus       309 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G  382 (437)
T TIGR00792       309 SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG  382 (437)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence             11111111122222222235566678888765       4567999999999999999999999999998877

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.91  E-value=2.1e-21  Score=179.37  Aligned_cols=316  Identities=16%  Similarity=0.044  Sum_probs=197.8

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcch----hHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRR----SLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFC   73 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr----~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~   73 (420)
                      +|.|..+.....+++.++..+++++ |+++||+|||    +.+.++..+..  .......  ++.+++.|          
T Consensus        34 ~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~----------  101 (382)
T PRK11128         34 QGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFA--VAFWFGAHSFWLLFVAI----------  101 (382)
T ss_pred             cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHH--HHHHHhcccHHHHHHHH----------
Confidence            3667888999999999999999999 9999999994    33332222221  1222222  77888899          


Q ss_pred             HHHHHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccccccee
Q psy6665          74 ILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIPSPVWL  149 (420)
Q Consensus        74 ~~~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~~~~~l  149 (420)
                        ++.|++.+ ...+...+++.++  +++|+++.+......++|..++|.+++.+    |||..|++.++..++.....+
T Consensus       102 --~l~g~~~~-~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~  176 (382)
T PRK11128        102 --GLFNLFFS-PLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQL  176 (382)
T ss_pred             --HHHHHHHc-ccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH
Confidence              99999988 6666677777776  45688888888888889999999888876    899999877754433211111


Q ss_pred             eecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHh
Q psy6665         150 LNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFY  229 (420)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (420)
                      ..+++.++             + +        ++ ++.++...++++.++ ++..+.....    ..+.. ........+
T Consensus       177 ~~~~~~~~-------------~-~--------~~-~~~~~~~~~~~~i~~-~~~~~~~~~~----~~l~~-~~~~~~~~~  227 (382)
T PRK11128        177 LRPTIMPQ-------------G-E--------SR-QQESAGWPAWKALLK-EPTVWRFLLC----VSLLQ-GSHAAYYGF  227 (382)
T ss_pred             ccCCCCCc-------------c-c--------cc-cccccccchHHHHHc-ChhHHHHHHH----HHHHH-HHhHhHHHH
Confidence            11110000             0 0        00 000011223444443 3222221111    11111 123445667


Q ss_pred             HHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHHHHHHHh
Q psy6665         230 AVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILFYVAISV  297 (420)
Q Consensus       230 ~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~  297 (420)
                      .|.+.++.|. ..+.+.......+..++..++.+++.||+++|+.+..+...           ++........+.. +..
T Consensus       228 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-g~~  306 (382)
T PRK11128        228 SAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILH-CGT  306 (382)
T ss_pred             HHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHH
Confidence            7888877787 66677777788888999999999999999999987766555           2222222222221 222


Q ss_pred             hc-hhhHHHHHhcccCChhhhhhhHHHHHHH-HHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHH
Q psy6665         298 IG-MLSIPWTMTAEIFPLEIRGIAQGLTFCL-AHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVY  366 (420)
Q Consensus       298 ~~-~~~~~~~~~~~~~p~~~r~~~~g~~~~~-~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  366 (420)
                      .+ ..+....+..+. +++++++..++.+.. ..+|..++|.+.|.+.|..| . ..++..+++.+++.++
T Consensus       307 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g-~-~~~~~~~~~~~~~~~~  374 (382)
T PRK11128        307 FTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG-A-GVFWVMALVALPALFI  374 (382)
T ss_pred             HHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHHHH
Confidence            22 234444666676 556678888888744 45677899999999999998 4 4566666555554443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.90  E-value=1e-22  Score=187.48  Aligned_cols=296  Identities=15%  Similarity=0.152  Sum_probs=187.1

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh---HHHHHhhccccccchhHHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY---TQLIMTGQIEKSLIPVFCILF   76 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~r~~~~~~~~~~~~~   76 (420)
                      +|.|..+..+..+.+.++.+++.++ |+++||+|||++++.+.++..++.++++++   ++.+++.|            +
T Consensus        32 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------------~   99 (366)
T TIGR00886        32 LGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLR------------L   99 (366)
T ss_pred             hCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH------------H
Confidence            4667788889999999999999999 999999999999999999999999888776   67788899            9


Q ss_pred             HHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhh--------------hhhHHHH-HhHhhhc
Q psy6665          77 YVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAV--------------LHWRTVA-WLSLAYI  141 (420)
Q Consensus        77 l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~--------------~~wr~~f-~~~~~~~  141 (420)
                      ++|++.+ ...+ ...++.|++|+++|+++.++.....++|..+++.++..              .+||+.| +..+++.
T Consensus       100 ~~g~~~~-~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~  177 (366)
T TIGR00886       100 FIGIAGG-SFAS-CMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGIL  177 (366)
T ss_pred             HHHHhch-hhHh-HHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHH
Confidence            9999976 6655 78899999999999999999986666666655544432              2699998 4333333


Q ss_pred             ccc-ccceeeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHh
Q psy6665         142 LIP-SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQL  220 (420)
Q Consensus       142 ~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (420)
                      .+. ...+...++++++.++. .+.     +...       .....+++...+..+.++ ++..+     ......+...
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~  238 (366)
T TIGR00886       178 LLPALLIFFVGADTPPGKPAT-GKL-----SFKG-------ARWSVGTGALGDQLKVFR-DRHTW-----ILALLYSVTF  238 (366)
T ss_pred             HHHHHHHHHhcccCCcccccc-hhc-----cccc-------ccccccchhHHHHHHHHh-ccchh-----hHHHHHHHHH
Confidence            222 11111112111110000 000     0000       000000000112223332 22211     1112222222


Q ss_pred             cchhhHHHhHHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc------------h---hH
Q psy6665         221 AGIYITIFYAVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE------------K---SL  283 (420)
Q Consensus       221 ~~~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~------------~---~~  283 (420)
                      ........+.|.++++. |+ +.+.+.......+.++++.++.+++.||+++|+.+..+...            .   +.
T Consensus       239 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (366)
T TIGR00886       239 GSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSL  318 (366)
T ss_pred             HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchH
Confidence            23456677888888775 77 66777778888889999999999999999998765544433            1   11


Q ss_pred             HHHHHHH-HHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHH
Q psy6665         284 IPVFCIL-FYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHIL  331 (420)
Q Consensus       284 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~  331 (420)
                      ....... ....+.+.+ .+..++...|+.| +++|++.|+.+...++|
T Consensus       319 ~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       319 AVFIVLFVALFFFSGAG-NGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHHHHHHHHhccc-cchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            1111111 112222222 3445677888887 68999999999887765

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.90  E-value=2.1e-21  Score=180.76  Aligned_cols=318  Identities=16%  Similarity=0.151  Sum_probs=191.7

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHHhh-----cchh-HHHHhhHHHHHHHHHHHHh-----HHHHHhhccccccc
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLRTY-----GRRS-LTMFSGLGMAVCMTTSGYY-----TQLIMTGQIEKSLI   69 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~-----Grr~-~l~~~~~~~~~~~~~~~~~-----~~~~~~~r~~~~~~   69 (420)
                      |.|.++......+...  .+..++ |+++||+     |||| .+..+.++.+++....++.     ++.+++..      
T Consensus        30 g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~------  101 (402)
T PRK11902         30 GLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLA------  101 (402)
T ss_pred             CCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHH------
Confidence            4566666666555554  466777 9999999     8875 7888888887777776654     44455555      


Q ss_pred             hhHHHHHHHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh-----hhHHHHHhHhhhcccc
Q psy6665          70 PVFCILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL-----HWRTVAWLSLAYILIP  144 (420)
Q Consensus        70 ~~~~~~~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~-----~wr~~f~~~~~~~~~~  144 (420)
                            ++.+++.+ ...++..+++.|+.|+++|+++.++...+..+|.++++.++..+     |||..|++.++..++.
T Consensus       102 ------~~~~~~~~-~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~  174 (402)
T PRK11902        102 ------VLVAFLSA-SQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAG  174 (402)
T ss_pred             ------HHHHHHHH-HHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHH
Confidence                  77788888 77778999999999999999999999999999999888765543     8999999988776554


Q ss_pred             ccceeeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchh
Q psy6665         145 SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIY  224 (420)
Q Consensus       145 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (420)
                      ....+..+++.++.              +        ++.+..++.++++++.++ ++..+. .+....+.....    .
T Consensus       175 ~l~~~~~~e~~~~~--------------~--------~~~~~~~~~~~~~~~l~~-~~~~~~-~l~~~~l~~~~~----~  226 (402)
T PRK11902        175 ALTTLWAPEPEVPA--------------R--------PPRSLGEAVVGPLRDFFS-RRGAWA-LLLLIVLYKLGD----A  226 (402)
T ss_pred             HHHHHhcCCCcccc--------------c--------ccchhHHHHHHHHHHHHh-CcCHHH-HHHHHHHHHhHH----H
Confidence            11111111110000              0        000000011223444443 333222 222221211111    1


Q ss_pred             hHHHhHHHHH-HhhCC-cchHHHHHHHHH-HHHHHHHHHHHHhhhccCchhhHhhhccc--------------hhHHHHH
Q psy6665         225 ITIFYAVQFL-EDMGS-RMNVYLATVLVG-VVRMVFGLLTSQLLRTYGRRSLTMFSQIE--------------KSLIPVF  287 (420)
Q Consensus       225 ~~~~~~~~~~-~~~g~-~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~--------------~~~~~~~  287 (420)
                      ....+.+.++ ++.|+ +.+.+......+ ++.+++.++++++.||+++|+.+..+..+              .+....+
T Consensus       227 ~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~  306 (402)
T PRK11902        227 FAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTM  306 (402)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence            1112233334 33477 555666654444 46889999999999999988876554433              0111111


Q ss_pred             HHHH-----HHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHH
Q psy6665         288 CILF-----YVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVI  362 (420)
Q Consensus       288 ~~~~-----~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  362 (420)
                      ....     ..........+....++.+.+|.+.+    ++.+....++..+++.+.|.+.|..| +...|.+.+.++++
T Consensus       307 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G-~~~~f~~~~~~~~~  381 (402)
T PRK11902        307 ALAIGIENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAYG-WPGFYLMTVVIALP  381 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHH
Confidence            1111     11111112234444677777775544    55555666777766778999999999 88888888877777


Q ss_pred             HHHHh
Q psy6665         363 SIVYV  367 (420)
Q Consensus       363 ~~~~~  367 (420)
                      +.++.
T Consensus       382 ~~~~~  386 (402)
T PRK11902        382 GLALL  386 (402)
T ss_pred             HHHHH
Confidence            76554

>KOG2504|consensus

Probab=99.90  E-value=3.4e-23  Score=193.91  Aligned_cols=352  Identities=16%  Similarity=0.126  Sum_probs=244.8

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHh-hccccccchhHHHHHH
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMT-GQIEKSLIPVFCILFY   77 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~-~r~~~~~~~~~~~~~l   77 (420)
                      +.+.+++.++.++......+..++ +.+.||+|.|++.+.|.++.+++.++..++  +|++++ .-            ++
T Consensus        77 ~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~g------------vi  144 (509)
T KOG2504|consen   77 GSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFG------------VI  144 (509)
T ss_pred             CCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH------------HH
Confidence            455666788888888888888888 999999999999999999999999999999  555544 55            99


Q ss_pred             HHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhccccccceeeecC
Q psy6665          78 VAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIPSPVWLLNKG  153 (420)
Q Consensus        78 ~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~~~~~l~~~~  153 (420)
                      .|+|.+ +...+...++..+| +++|+.+.|+..++.++|..+-|.+...+    |||..+++.+.+.+-....-+..++
T Consensus       145 ~G~G~~-~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  145 GGLGLG-LIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP  222 (509)
T ss_pred             hhccch-hhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999 77776888888887 57899999999999999999888887776    9999998888776544111111111


Q ss_pred             ------cHHHHHHHH-HHH--------h-c-chhhhhhhH----HHHhhhccchhhh--hhhhHHHHHhhccccchHHHH
Q psy6665         154 ------RANQALKSL-KYL--------A-R-NYKEVKNKE----QELKKMNSTKENQ--SLSARLIKMVTMATGIKPLLV  210 (420)
Q Consensus       154 ------~~~~~~~~~-~~~--------~-~-~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  210 (420)
                            +.+++.... ...        + . .+.+.....    ...+.++..++.+  ........++ .+.++.+.++
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~ll~~~~fl  301 (509)
T KOG2504|consen  223 LSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLD-LSLLKDPKFL  301 (509)
T ss_pred             CCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhh-HHHHcCchHH
Confidence                  000000000 000        0 0 000000000    0000000000000  0001111111 2334445666


Q ss_pred             HHHHHHHHHhcchhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCch--hhHhhhccc-------
Q psy6665         211 ITVLFALQQLAGIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRR--SLTMFSQIE-------  280 (420)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~-------  280 (420)
                      .......+...++.....++|.+..+.++ ..++.......++..++++++.|++.|+...+  ....++.+.       
T Consensus       302 ~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~  381 (509)
T KOG2504|consen  302 LLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLF  381 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHH
Confidence            66666666666788899999999998888 88999999999999999999999999998843  333333332       


Q ss_pred             ----hhHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHH
Q psy6665         281 ----KSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFF  356 (420)
Q Consensus       281 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~  356 (420)
                          ..+..+...+.+.+.....+.......+.|+++.+.-..+.|+...+..++..++|++.|.+.|..|+|...|...
T Consensus       382 ~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~  461 (509)
T KOG2504|consen  382 LPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFC  461 (509)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhc
Confidence                3444455555555554445555555688899999999999999999999999999999999999999888888888


Q ss_pred             HHHHHHHHHHhh
Q psy6665         357 ALISVISIVYVY  368 (420)
Q Consensus       357 ~~~~~~~~~~~~  368 (420)
                      +...+++..+.+
T Consensus       462 g~~~~~s~~~~~  473 (509)
T KOG2504|consen  462 GLCFLLSAVLLL  473 (509)
T ss_pred             ChHHHHHHHHHH
Confidence            877777776553

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.89  E-value=5.6e-21  Score=166.46  Aligned_cols=319  Identities=12%  Similarity=0.068  Sum_probs=228.8

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh-----HHHHHhhccccccchhHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY-----TQLIMTGQIEKSLIPVFCI   74 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~r~~~~~~~~~~~   74 (420)
                      |+.+..+..++...++.|+.+++++ |++.+|+|+|+.+++|+.++++++.++.-+     +..++.+-           
T Consensus        43 f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~l-----------  111 (422)
T COG0738          43 FDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVAL-----------  111 (422)
T ss_pred             hCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH-----------
Confidence            4567788889999999999999999 999999999999999999999999988533     88888888           


Q ss_pred             HHHHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh-----------------------hhH
Q psy6665          75 LFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL-----------------------HWR  131 (420)
Q Consensus        75 ~~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~-----------------------~wr  131 (420)
                       ++.|.|.+ .....++.+++...|+++....+.+.+..+++|.+++|+++..+                       .|+
T Consensus       112 -Fila~Gi~-~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~  189 (422)
T COG0738         112 -FILASGIG-LLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQ  189 (422)
T ss_pred             -HHHHhhhH-HHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhh
Confidence             99999999 88888999999999999999999999999999999999988765                       266


Q ss_pred             HHHHhHhhhccccccceeeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHH
Q psy6665         132 TVAWLSLAYILIPSPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVI  211 (420)
Q Consensus       132 ~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (420)
                      ++|...+...++........|.               ++.++        .+.++.+.++....+.++ +++. +.-.+.
T Consensus       190 ~pYl~~~~~lvll~v~~~~~k~---------------p~~~~--------~~~~~~~~~~~~~~~l~~-~~~~-~~gvl~  244 (422)
T COG0738         190 FPYLILAGLLVLLAVLILLSKL---------------PDLQV--------AAPSLGASGSAGLSSLFQ-NKHL-RLGVLA  244 (422)
T ss_pred             hHHHHHHHHHHHHHHHHHhccC---------------CcCCc--------ccccccccccchHHHHHh-ChHH-HHHHHH
Confidence            6776666655554111111110               00000        000000011113344443 3222 222223


Q ss_pred             HHHHHHHHhcchhhHHHhHHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc---------
Q psy6665         212 TVLFALQQLAGIYITIFYAVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE---------  280 (420)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~---------  280 (420)
                      .+++.    ..-.....|++.|+.+. |+ ..++....+....+.++|++++..+..|+...+.+.....+         
T Consensus       245 ~FlYV----G~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~  320 (422)
T COG0738         245 IFLYV----GAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVA  320 (422)
T ss_pred             HHHHH----hHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            33333    34556788999999884 87 77788888889999999999999999999988877766644         


Q ss_pred             --hhHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHH
Q psy6665         281 --KSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFAL  358 (420)
Q Consensus       281 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~  358 (420)
                        ++...+ ......+.+...+.|..++...+..|++  ....|.......+|+++.|++.|++.|..| ....+.....
T Consensus       321 l~~g~v~~-~~l~~ig~F~simfPTIfslal~~l~~~--ts~~s~~l~maivGGAiiP~l~G~i~d~~g-~~~~~~~~pl  396 (422)
T COG0738         321 LIGGVVAL-YALFLIGLFNSIMFPTIFSLALKNLGEH--TSVGSGLLVMAIVGGAIIPPLQGVIADMFG-IQLTFLIVPL  396 (422)
T ss_pred             HhcChHHH-HHHHHHHHHhHHHHHHHHHHHHhccCcc--ccccceeeeeheecchHHHHHHHHHHHhhh-hHHHHHHHHH
Confidence              333333 3333444555566788889999998833  444555566678899999999999999999 5555555566


Q ss_pred             HHHHHHH
Q psy6665         359 ISVISIV  365 (420)
Q Consensus       359 ~~~~~~~  365 (420)
                      .|.+..+
T Consensus       397 lc~lyV~  403 (422)
T COG0738         397 LCYLYVL  403 (422)
T ss_pred             HHHHHHH
Confidence            6665553

>TIGR00901 2A0125 AmpG-related permease

Probab=99.89  E-value=2.6e-21  Score=177.29  Aligned_cols=288  Identities=15%  Similarity=0.092  Sum_probs=181.2

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHHhh-----cchhHH-HHhhHHHHHHHHHHHHh-----HHHHHhhccccccc
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLRTY-----GRRSLT-MFSGLGMAVCMTTSGYY-----TQLIMTGQIEKSLI   69 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~-----Grr~~l-~~~~~~~~~~~~~~~~~-----~~~~~~~r~~~~~~   69 (420)
                      |.|.++....... .+...+ .++ |+++||+     ||||.+ +.+.++.++...+.++.     .+.+....      
T Consensus        19 g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~------   90 (356)
T TIGR00901        19 NVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLA------   90 (356)
T ss_pred             CCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHH------
Confidence            4556665555433 333344 667 9999998     898874 56777777776666554     33444455      


Q ss_pred             hhHHHHHHHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----h--------hHHHHHhH
Q psy6665          70 PVFCILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----H--------WRTVAWLS  137 (420)
Q Consensus        70 ~~~~~~~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~--------wr~~f~~~  137 (420)
                            ++.+++.+ ...++..+++.|++|+|+|+++.++...+..+|.++++.++..+    +        ||..|++.
T Consensus        91 ------~~~~~~~~-~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~  163 (356)
T TIGR00901        91 ------FLIAFFSA-TQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWT  163 (356)
T ss_pred             ------HHHHHHHH-HHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHH
Confidence                  77888888 77777999999999999999999999999999999999888654    6        99999988


Q ss_pred             hhhccccc-cceeeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHH
Q psy6665         138 LAYILIPS-PVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFA  216 (420)
Q Consensus       138 ~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (420)
                      ++..++.. ..++..+++.++.              +        ++.+++++.++..++.++ ++.. ++.........
T Consensus       164 ai~~l~~~~~~~~~~~e~~~~~--------------~--------~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~  219 (356)
T TIGR00901       164 ALLILPGLLVTLFLAKEPQEDA--------------S--------VPKPLTQAVLKPIREFFQ-RKNM-IQALLLLLLIV  219 (356)
T ss_pred             HHHHHHHHHHHHHhccCCCccc--------------c--------cchhHHHHHHHHHHHHHH-hcCc-hHHHHHHHHHH
Confidence            88766541 1111112111000              0        000000011223344443 2221 11222222222


Q ss_pred             HHHhcchhhHHHhHHHHHHhhCC-cchHHHHHHHHH-HHHHHHHHHHHHhhhccCchhhHhhhccc----------h---
Q psy6665         217 LQQLAGIYITIFYAVQFLEDMGS-RMNVYLATVLVG-VVRMVFGLLTSQLLRTYGRRSLTMFSQIE----------K---  281 (420)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~----------~---  281 (420)
                       ......+....+.|.++++.|+ +.+.+......+ +..+++.++++++.||+|+|+.+..+.++          .   
T Consensus       220 -~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~  298 (356)
T TIGR00901       220 -LYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASN  298 (356)
T ss_pred             -HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             2222355677788888887787 556565555544 57789999999999999998887766655          0   


Q ss_pred             --------hHHHHHHHHHHH-HHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHH
Q psy6665         282 --------SLIPVFCILFYV-AISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAH  329 (420)
Q Consensus       282 --------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~  329 (420)
                              +........... .+......+...++..|.+|+++||+.+|+.+...+
T Consensus       299 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       299 GHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             CcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence                    001111111111 222223456667999999999999999999887654

>KOG3764|consensus

Probab=99.89  E-value=1.1e-22  Score=175.78  Aligned_cols=319  Identities=9%  Similarity=0.082  Sum_probs=222.0

Q ss_pred             CccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHHHH
Q psy6665           3 SRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFYVA   79 (420)
Q Consensus         3 ~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l~G   79 (420)
                      .+..+....++...+.+.+.+++ |.+.||+|+|..+++|...+..+++++++.  ++++++.|            .+||
T Consensus       103 ~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR------------~LQg  170 (464)
T KOG3764|consen  103 RENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVAR------------SLQG  170 (464)
T ss_pred             ccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHH------------HHhh
Confidence            34567788899999999999999 999999999999999999999999999999  99999999            9999


Q ss_pred             HHhhcccchhhhhhhhhccCccc-hhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhccccccc-eeeecC
Q psy6665          80 ISVIAMGPSPAIVYITEVARPDL-RGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIPSPV-WLLNKG  153 (420)
Q Consensus        80 ~~~~~~~~~~~~~~i~e~~~~~~-r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~~~~-~l~~~~  153 (420)
                      +|.+ +......++++|.+|+++ |++++|+.-.+.++|.++||..|+.+    |.+.+|++.++++++..+. .+..+.
T Consensus       171 vgsA-~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p  249 (464)
T KOG3764|consen  171 VGSA-FADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEP  249 (464)
T ss_pred             hhHH-HHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCc
Confidence            9999 888889999999999765 79999999999999999999999987    9999999999988875111 111111


Q ss_pred             cHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhHHHH
Q psy6665         154 RANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQF  233 (420)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (420)
                      ...                           ..++.++..+..++++      .+.++...........+....--.++..
T Consensus       250 ~~~---------------------------~~~~~~~~~~~~~Ll~------dP~I~~~agai~~~n~~lafLePtlslw  296 (464)
T KOG3764|consen  250 TEM---------------------------DPDSTEQGTPMWSLLM------DPYILLIAGAITFSNSSLAFLEPTLSLW  296 (464)
T ss_pred             ccc---------------------------CccccccCccHHHHHh------CchHhhhhcchhhccchHHHhCcccHHH
Confidence            000                           0001112223344443      2223333222222222222222223333


Q ss_pred             HHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccC--chhhHhhhccc-----------hhHHHHHH----HHHHHH
Q psy6665         234 LEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYG--RRSLTMFSQIE-----------KSLIPVFC----ILFYVA  294 (420)
Q Consensus       234 ~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~-----------~~~~~~~~----~~~~~~  294 (420)
                      ..+. .. ..+.+.......+...++..+.|.+.||++  |......+.+.           +.+..++.    ..+...
T Consensus       297 m~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~  376 (464)
T KOG3764|consen  297 MLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIG  376 (464)
T ss_pred             HHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHH
Confidence            3332 33 336777888889999999999999999999  43222222222           22222221    222222


Q ss_pred             HHhhchhhHHHHHhcccCChh---hhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhh
Q psy6665         295 ISVIGMLSIPWTMTAEIFPLE---IRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYI  369 (420)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~p~~---~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  369 (420)
                      .......|.. .+..|.-..+   .-|...++......++.+++|.+.|.+.+..| +.+...+.+...++..-++.+
T Consensus       377 ~~dasl~P~l-~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iG-F~wl~~iig~~n~iyapvl~l  452 (464)
T KOG3764|consen  377 LADASLIPTL-GYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIG-FEWLMTIIGILNLIYAPVLLL  452 (464)
T ss_pred             HHHHHHhhhh-HHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehh-HHHHHHHHHHHHHHHHHHHHH
Confidence            2222233332 4444443333   66889999999999999999999999999999 888888888888877766543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.88  E-value=6e-21  Score=180.26  Aligned_cols=353  Identities=13%  Similarity=0.060  Sum_probs=200.8

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHh-hcchhHHHHhhHHHHHHHHHHHHh---HHHHHhhccccccchhHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRT-YGRRSLTMFSGLGMAVCMTTSGYY---TQLIMTGQIEKSLIPVFCIL   75 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~r~~~~~~~~~~~~   75 (420)
                      +|.+.++.....+.+.....+..++ |+++|| +||||+++.+.++++++++.++++   ...+++.|            
T Consensus        45 lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~------------  112 (489)
T PRK10207         45 LGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIAL------------  112 (489)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH------------
Confidence            3556677777777777677777778 999999 999999999999999999999887   33455789            


Q ss_pred             HHHHHHhhcccchhhhhhhhhccCcc--chhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccccccee
Q psy6665          76 FYVAISVIAMGPSPAIVYITEVARPD--LRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIPSPVWL  149 (420)
Q Consensus        76 ~l~G~~~~~~~~~~~~~~i~e~~~~~--~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~~~~~l  149 (420)
                      +++|+|.| ...+...+++.|.+|++  +|+++.++++.+.++|..++|.+++++    |||+.|++.++..++....+.
T Consensus       113 ~l~~ig~g-~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~  191 (489)
T PRK10207        113 GTIAVGNG-LFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYF  191 (489)
T ss_pred             HHHHhccc-cccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHH
Confidence            99999999 77777899999999887  457889999999999999988888776    899999986543222210111


Q ss_pred             eecCcH------H-H----HHHHHH----------HHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHH
Q psy6665         150 LNKGRA------N-Q----ALKSLK----------YLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPL  208 (420)
Q Consensus       150 ~~~~~~------~-~----~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (420)
                      ..++..      + +    ......          ........................   ..-..+..+.++..+++.
T Consensus       192 ~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~f~~~~~~~~~~~r~r~  268 (489)
T PRK10207        192 ACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVT---IIFFREAFKLDKTGRNKM  268 (489)
T ss_pred             HcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH---HHHHHHHhcCCHHHHHHH
Confidence            111100      0 0    000000          000000000000000000000000   000000000011112222


Q ss_pred             HHHHHHH--HHHHhcchhhHHHhHHHHHHh-h-----CCcchHHHHHHHHHHHHHHHHHHHHHhhhccCchhh-------
Q psy6665         209 LVITVLF--ALQQLAGIYITIFYAVQFLED-M-----GSRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSL-------  273 (420)
Q Consensus       209 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~-----g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~-------  273 (420)
                      +..+.+.  ....+..+....+..+.+.++ .     |+............+..++.+++.+++.||+++|+.       
T Consensus       269 ~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k  348 (489)
T PRK10207        269 FVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMK  348 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHH
Confidence            2222111  111222222333444444443 1     333344555566667777888888999999988852       


Q ss_pred             Hhhhccc---------------------hhHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHH
Q psy6665         274 TMFSQIE---------------------KSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILM  332 (420)
Q Consensus       274 ~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~  332 (420)
                      +..++++                     .+.+.++...++.+.......+....++.+..|++.++.++|+.+....+|+
T Consensus       349 ~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~  428 (489)
T PRK10207        349 FTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAF  428 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            2222111                     1112222222233333333466667888889999999999999999999999


Q ss_pred             HHHHHHhHHHHH---------hcCcchHHHHHHHHHHHHHHHHhhh
Q psy6665         333 FFALQYYPWFKD---------SVGGSAMVQWFFALISVISIVYVYI  369 (420)
Q Consensus       333 ~~~~~~~g~l~~---------~~g~~~~~~~~~~~~~~~~~~~~~~  369 (420)
                      .++..+......         ..+.+...|...++..++..++.+.
T Consensus       429 ~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~  474 (489)
T PRK10207        429 LLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMAL  474 (489)
T ss_pred             HHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            998777654421         0111345555566555555554443

>KOG2615|consensus

Probab=99.88  E-value=1.3e-21  Score=168.26  Aligned_cols=313  Identities=13%  Similarity=0.068  Sum_probs=188.3

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHHHHHHhhcc
Q psy6665           9 LATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFYVAISVIAM   85 (420)
Q Consensus         9 ~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l~G~~~~~~   85 (420)
                      ...-+.+.+++.++++. |.++||+|||++++++++..++...+.+.+  +..+.+.|            ++.|+..| .
T Consensus        71 GflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR------------~l~Gi~kg-n  137 (451)
T KOG2615|consen   71 GFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLAR------------FLGGIFKG-N  137 (451)
T ss_pred             hhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HhhhhccC-c
Confidence            34557889999999999 999999999999999999999999999999  86777779            99999999 8


Q ss_pred             cchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhhhh------HHHHHh----Hhhhccc--cccceeeecC
Q psy6665          86 GPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVLHW------RTVAWL----SLAYILI--PSPVWLLNKG  153 (420)
Q Consensus        86 ~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~w------r~~f~~----~~~~~~~--~~~~~l~~~~  153 (420)
                      ..+ +.++++|..++|+|+++++..+..+++|.++||++|+++.-      +.+|..    ..++...  ....|++ ++
T Consensus       138 l~v-~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~l-pE  215 (451)
T KOG2615|consen  138 LSV-IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFL-PE  215 (451)
T ss_pred             hHH-HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhC-Cc
Confidence            887 89999999999999999999999999999999999998722      122222    1111111  0111221 11


Q ss_pred             cHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchH--HHHHHHHHHHHHhcchhhHHHhHH
Q psy6665         154 RANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKP--LLVITVLFALQQLAGIYITIFYAV  231 (420)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  231 (420)
                      +.+..+    +.+++.+-.+..+++.+.....     ........+ +++...+  ....+.+..+.... .+....+.+
T Consensus       216 TL~~rk----~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~lr-n~p~~~~i~~~~i~~l~~~ly~~-l~s~~~~t~  284 (451)
T KOG2615|consen  216 TLPLRK----RNDEHSTLQEAADDRLALLKFA-----RIFKVAALR-NPPLLDFISVLRIFGLHYFLYLE-LFSGLENTV  284 (451)
T ss_pred             cccchh----hcccccchhhhhhhhhhhcchh-----hhhhhhhhc-CccccchHHHHHHHHHHHHHHHH-HHHHHHhhH
Confidence            110000    0000000000000000000000     000011111 2222221  11111111111111 222233333


Q ss_pred             HHH--HhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccC--chhhHhhhccc-----------hhHHHHHHHHHHHHH
Q psy6665         232 QFL--EDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYG--RRSLTMFSQIE-----------KSLIPVFCILFYVAI  295 (420)
Q Consensus       232 ~~~--~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~-----------~~~~~~~~~~~~~~~  295 (420)
                      ..+  +..|+ +.+.+......++.+.+.........+|.+  -+-.+..+..+           .....+.....+..+
T Consensus       285 ~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf  364 (451)
T KOG2615|consen  285 LFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSF  364 (451)
T ss_pred             HHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHH
Confidence            444  23377 777777777777777777777766667665  33333333332           111122222222223


Q ss_pred             HhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcC
Q psy6665         296 SVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVG  347 (420)
Q Consensus       296 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g  347 (420)
                      ......+....+.....|+++||+.+|+....+.++-++||.+.|.+..+.-
T Consensus       365 ~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~  416 (451)
T KOG2615|consen  365 STASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQ  416 (451)
T ss_pred             HHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEec
Confidence            2333345556788889999999999999999999999999999998776543

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.88  E-value=2.8e-20  Score=175.70  Aligned_cols=354  Identities=11%  Similarity=0.004  Sum_probs=212.9

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHh-hcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRT-YGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILF   76 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~   76 (420)
                      +|.+..+....++.+.++..+++++ |+++|| +|||++++++.++.+++.++.+++  ++.+++.|            +
T Consensus        43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~------------~  110 (475)
T TIGR00924        43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGL------------G  110 (475)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHH------------H
Confidence            3567778888999999999999999 999999 899999999999999999988887  67788899            9


Q ss_pred             HHHHHhhcccchhhhhhhhhccCccc---hhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccccccee
Q psy6665          77 YVAISVIAMGPSPAIVYITEVARPDL---RGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIPSPVWL  149 (420)
Q Consensus        77 l~G~~~~~~~~~~~~~~i~e~~~~~~---r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~~~~~l  149 (420)
                      +.|+|.| ...+...++++|++|+++   |+++.++.+.+.++|..++|.+++.+    +||+.|++.++..++....++
T Consensus       111 l~g~g~g-~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~  189 (475)
T TIGR00924       111 TIAVGSG-LFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFF  189 (475)
T ss_pred             HHHhccc-cccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence            9999999 777778899999998764   88899999999999999999998876    899999887754433311111


Q ss_pred             eecCcH----------HHHH-HHHHHHh-----------c--chhhhhhhHHHHh---hhccc-hhhhhhhhHHHHHhhc
Q psy6665         150 LNKGRA----------NQAL-KSLKYLA-----------R--NYKEVKNKEQELK---KMNST-KENQSLSARLIKMVTM  201 (420)
Q Consensus       150 ~~~~~~----------~~~~-~~~~~~~-----------~--~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~  201 (420)
                      ..++..          ++.+ +......           .  ...+....+.-..   ..... ......++..+.   .
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  266 (475)
T TIGR00924       190 AGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPRLDA---V  266 (475)
T ss_pred             HcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhccCCH---H
Confidence            111000          0000 0000000           0  0000000000000   00000 000000000000   0


Q ss_pred             cccchHHHHHHHHHHHHHhcchhhHHHhHHHHHHhh-C-----CcchHHHHHHHHHHHHHHHHHHHHHhhhccCc-----
Q psy6665         202 ATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDM-G-----SRMNVYLATVLVGVVRMVFGLLTSQLLRTYGR-----  270 (420)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g-----~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~-----  270 (420)
                      .+.+...++..++.....+..+.......+.+.++. +     +............+.-++..++..++..|.+|     
T Consensus       267 ~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~  346 (475)
T TIGR00924       267 ARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDP  346 (475)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            001111122222222222222333444445554442 2     22235567777777777777665543333333     


Q ss_pred             hhhH--hhhccc--------------------hhHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHH
Q psy6665         271 RSLT--MFSQIE--------------------KSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLA  328 (420)
Q Consensus       271 ~~~~--~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~  328 (420)
                      +...  .+++++                    .+.+.++...++.........|...++..+..|++.||+.+|+.....
T Consensus       347 ~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~  426 (475)
T TIGR00924       347 TTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQ  426 (475)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            2222  222222                    122333333344444444557888899999999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhcc
Q psy6665         329 HILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFL  371 (420)
Q Consensus       329 ~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  371 (420)
                      .+|..+++.+.....+..+ +...+...++++++..++.++..
T Consensus       427 ~~g~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  468 (475)
T TIGR00924       427 AMGSLLGGYLATFGAVPQG-VTGVFGKIGLVTLLVGVVMALMV  468 (475)
T ss_pred             HHHHHHHHHHHHHHhcccc-hhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998887766666 66667666666666666554443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.88  E-value=4.2e-20  Score=158.57  Aligned_cols=320  Identities=15%  Similarity=0.161  Sum_probs=240.6

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh-HHHHHhhccccccchhHHHHHHHH
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY-TQLIMTGQIEKSLIPVFCILFYVA   79 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~l~G   79 (420)
                      |.+.+......++..+...+.+++ .+++.|+|.++.+..++++.+++.++-... .+.++.+-            .+.|
T Consensus        43 gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~~~~~L~~gt------------~l~G  110 (395)
T COG2807          43 GLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLGGLPLLFLGT------------LLAG  110 (395)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHH------------HHHH
Confidence            556777788888899999999999 999999999999999999999999998887 77788888            9999


Q ss_pred             HHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh-----hhHHHHHhHhhhccccccceeeecCc
Q psy6665          80 ISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL-----HWRTVAWLSLAYILIPSPVWLLNKGR  154 (420)
Q Consensus        80 ~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~-----~wr~~f~~~~~~~~~~~~~~l~~~~~  154 (420)
                      .|.+ ...+..+..+.+.+| |+-+..+++|....++|..+++.+...+     +||....+-+.++++....|+....|
T Consensus       111 ~gIa-v~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~~r  188 (395)
T COG2807         111 AGIA-VINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQALR  188 (395)
T ss_pred             hhHH-HHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            9999 999999999999997 5579999999999999888887666555     79999988888888764445432111


Q ss_pred             HHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhHHHHH
Q psy6665         155 ANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFL  234 (420)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (420)
                      ...                        ..   .+++..+      ..+.++.+..+...+++..+...+|....|+|.++
T Consensus       189 ~~~------------------------~~---~~~~~~~------~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~il  235 (395)
T COG2807         189 EQA------------------------AS---IATKLVS------VRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAIL  235 (395)
T ss_pred             ccc------------------------cc---ccccccc------ccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            100                        00   0000000      12344566677777888888888999999999999


Q ss_pred             HhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhH-hhhccc-----------hhHHHHHHHHHHHHHHhhchh
Q psy6665         235 EDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLT-MFSQIE-----------KSLIPVFCILFYVAISVIGML  301 (420)
Q Consensus       235 ~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~-~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~  301 (420)
                      .|.|+ +.+++...+...+.+++.++....+.+|...++.+ .....+           .....+.. .+..+....+.+
T Consensus       236 i~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F  314 (395)
T COG2807         236 IDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAF  314 (395)
T ss_pred             HHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHH
Confidence            99999 88999999999999999999999999976544333 332222           11111111 122223333445


Q ss_pred             hHHHHHhcccC-ChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhh
Q psy6665         302 SIPWTMTAEIF-PLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYI  369 (420)
Q Consensus       302 ~~~~~~~~~~~-p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  369 (420)
                      +.....+.+.. .++..+.-.|+.+.++++-.+++|.+.|++.|..|++......++.+.++..+.-+.
T Consensus       315 ~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~  383 (395)
T COG2807         315 PLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLR  383 (395)
T ss_pred             HHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhh
Confidence            66666666554 456668889999999999999999999999999998888777777777666665543

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.87  E-value=2.2e-19  Score=167.43  Aligned_cols=335  Identities=13%  Similarity=0.142  Sum_probs=226.8

Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhH-HHHHHHHHHHHhHHHHHhhccccccchhHHHHHHHHHHhhcc
Q psy6665           8 YLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGL-GMAVCMTTSGYYTQLIMTGQIEKSLIPVFCILFYVAISVIAM   85 (420)
Q Consensus         8 ~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~l~G~~~~~~   85 (420)
                      +..+.++..+-.++..|+ |.++|+-|+||.++.... +..++++.+.+.        ..-.+.+...++++.-++.+ .
T Consensus        72 ~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v--------~~~~~~~~~~l~iia~v~~~-~  142 (477)
T PF11700_consen   72 WLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFV--------SPGQWWLALVLFIIANVGYE-A  142 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHh--------CcchHHHHHHHHHHHHHHHH-H
Confidence            445666777777778888 999999998777666444 444444444443        01111222233466667777 6


Q ss_pred             cchhhhhhhhhccCccch--------------------------hhhHhHHHHHHHHHHHHHHHHhhhh-----------
Q psy6665          86 GPSPAIVYITEVARPDLR--------------------------GALICIGPSITSLGMVIVYALGAVL-----------  128 (420)
Q Consensus        86 ~~~~~~~~i~e~~~~~~r--------------------------~~~~~~~~~~~~lG~~~~~~~~~~~-----------  128 (420)
                      ..+...+++.|..+++++                          ++..+.-.+...+|.++...+...+           
T Consensus       143 ~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~  222 (477)
T PF11700_consen  143 SNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNT  222 (477)
T ss_pred             HHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence            677789999999999998                          9999999888888888877665544           


Q ss_pred             -hhHHHHHhHhhhcccc-ccceeeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHh-hccccc
Q psy6665         129 -HWRTVAWLSLAYILIP-SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMV-TMATGI  205 (420)
Q Consensus       129 -~wr~~f~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  205 (420)
                       +-|..+.+.++.-++. .|.++..++++...                       .....++.-+..++++.+ .++..+
T Consensus       223 ~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~-----------------------~~~~~~~~~~~g~~~l~~t~k~~~~  279 (477)
T PF11700_consen  223 WAIRVAFLIVALWWLVFSIPLFLWLPDRPGPR-----------------------PLPSGSSYLRFGFKRLWRTFKEIRK  279 (477)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCC-----------------------CCCcchhHHHHHHHHHHHHHHHHHh
Confidence             2477777777776665 44444444332210                       000000001222333322 111122


Q ss_pred             hHHHHHHHHHHHHHhcchhhHHHhHHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCch--hhHhhhccc-
Q psy6665         206 KPLLVITVLFALQQLAGIYITIFYAVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRR--SLTMFSQIE-  280 (420)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~-  280 (420)
                      .+-+..+++..+....+...+......|..+. |+ ..+.........+.+++|+++.+++.||+|.|  +.+..+... 
T Consensus       280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~  359 (477)
T PF11700_consen  280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILW  359 (477)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence            33344445555555566778888888888755 88 77778888888999999999999999999998  666655544 


Q ss_pred             ------------------hhHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHH
Q psy6665         281 ------------------KSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWF  342 (420)
Q Consensus       281 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l  342 (420)
                                        .+........++.+.+..+..+..-++.+|+.|+++.+..+|++.......++++|.+.|.+
T Consensus       360 ~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i  439 (477)
T PF11700_consen  360 IIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLI  439 (477)
T ss_pred             HHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                              11223334444455555566778889999999999999999999999999999999999999


Q ss_pred             HHhcCcchHHHHHHHHHHHHHHHHhhhccccCC
Q psy6665         343 KDSVGGSAMVQWFFALISVISIVYVYIFLPETH  375 (420)
Q Consensus       343 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (420)
                      .+.+|+.+..+....++.+++.++. ..++..+
T Consensus       440 ~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~  471 (477)
T PF11700_consen  440 TDATGSQRYGFLFLLVLFLIGLILL-FFVDVEK  471 (477)
T ss_pred             HHHhCCchhHHHHHHHHHHHHHHHH-hhccchh
Confidence            9999978888888888777777765 3444433

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.86  E-value=4.6e-20  Score=166.42  Aligned_cols=321  Identities=11%  Similarity=0.070  Sum_probs=199.7

Q ss_pred             CCCccch-HHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHH
Q psy6665           1 MGSRMNV-YLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILF   76 (420)
Q Consensus         1 ~~~~~~~-~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~   76 (420)
                      +|.+..+ ...+.++++.+++++.++ |+++||+|.|+++.++.+.+++.+++.+++  +..+.+.|            +
T Consensus        56 lglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R------------~  123 (511)
T TIGR00806        56 LNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLME------------V  123 (511)
T ss_pred             cCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------H
Confidence            4667777 889999999999999999 999999999999999999999999999998  99999999            9


Q ss_pred             HHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh---hhHHHHHhHhhh---cccc-cccee
Q psy6665          77 YVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL---HWRTVAWLSLAY---ILIP-SPVWL  149 (420)
Q Consensus        77 l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~---~wr~~f~~~~~~---~~~~-~~~~l  149 (420)
                      +.|++.| ... +...++..|+|+++|+++.++..++..+|.++++++++.+   |||+.+.+.-+-   ..+. ...++
T Consensus       124 llGvaEA-~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~  201 (511)
T TIGR00806       124 FYSVTMA-ARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALF  201 (511)
T ss_pred             HHHHHHH-HHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999 666 6999999999999999999999999999999999988876   888754433211   1111 00111


Q ss_pred             eecCcHHHHHHHHHHH--hcc-hhhhhhhHHHHhhhccch-h-hhhhhhHHHHHh-hccccchHHHHHHHHHHHHHhcch
Q psy6665         150 LNKGRANQALKSLKYL--ARN-YKEVKNKEQELKKMNSTK-E-NQSLSARLIKMV-TMATGIKPLLVITVLFALQQLAGI  223 (420)
Q Consensus       150 ~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  223 (420)
                      +.+  .++..-..+.-  ++. ..+.+...++. ..+..+ . .......+.+++ ....++.+.++.-.++.....+++
T Consensus       202 LP~--~~~sl~f~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~  278 (511)
T TIGR00806       202 LKR--PKRSLFFNRLEDVRGALPCELDQMVPGP-GGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGY  278 (511)
T ss_pred             CCC--CchhhhhccccccccccccccccCCCCC-ccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHH
Confidence            111  11100000000  000 00000000000 000000 0 000111122222 222333344444445555566678


Q ss_pred             hhHHHhHHHHHHhhCC--cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc--------------hhHHHHH
Q psy6665         224 YITIFYAVQFLEDMGS--RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE--------------KSLIPVF  287 (420)
Q Consensus       224 ~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~--------------~~~~~~~  287 (420)
                      +.+.+|.....+...-  +..-+..-.+..+.+.+..+..|++-.++.+...+.++...              +-|....
T Consensus       279 ~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~  358 (511)
T TIGR00806       279 YLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYV  358 (511)
T ss_pred             HHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHH
Confidence            8888888888776522  22333445556677778888899986665443222222221              2233333


Q ss_pred             HHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHh
Q psy6665         288 CILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYY  339 (420)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~  339 (420)
                      ...++...+.+. .++...-+++....+.-|..+|++++..-+.+.+-..+.
T Consensus       359 ~yvlf~~~y~fl-itia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~iV  409 (511)
T TIGR00806       359 TYVLFRGIYQFL-VPIATFQIASSLSKELCALVFGINTFVATALKTIITAVV  409 (511)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEEE
Confidence            344444444332 345556666666767779999999999888887766554

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.85  E-value=7.8e-21  Score=184.39  Aligned_cols=249  Identities=13%  Similarity=0.074  Sum_probs=166.8

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh-H----------------------
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY-T----------------------   56 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~----------------------   56 (420)
                      |+.+..+.....+.+.++.+++.++ ++++||+|||+++.++.++++++++++++. +                      
T Consensus        63 F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~  142 (633)
T TIGR00805        63 FKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANS  142 (633)
T ss_pred             hCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccccccc
Confidence            4556667778889999999999999 999999999999999999999999988764 1                      


Q ss_pred             ------------------------------HHHHhhccccccchhHHHHHHHHHHhhcccchhhhhhhhhccCccchhhh
Q psy6665          57 ------------------------------QLIMTGQIEKSLIPVFCILFYVAISVIAMGPSPAIVYITEVARPDLRGAL  106 (420)
Q Consensus        57 ------------------------------~~~~~~r~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~  106 (420)
                                                    ..++++|            +++|+|.+ ...+...+++.|++|+++|+++
T Consensus       143 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r------------~l~GiG~~-~~~~~~~~~i~d~~~~~~~~~~  209 (633)
T TIGR00805       143 FLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQ------------LLRGIGAT-PIFPLGISYIDDFAKSKNSPLY  209 (633)
T ss_pred             ccccCCCCCCccccccccccccccCCCceehhhHHHH------------HHHhccCC-cchhcCchhhhccCCccccHHH
Confidence                                          1344566            99999999 7777799999999999999999


Q ss_pred             HhHHHHHHHHHHHHHHHHhhhh--------------------------hhHHHHHhHhhhcccc-ccceeeecCcHHHHH
Q psy6665         107 ICIGPSITSLGMVIVYALGAVL--------------------------HWRTVAWLSLAYILIP-SPVWLLNKGRANQAL  159 (420)
Q Consensus       107 ~~~~~~~~~lG~~~~~~~~~~~--------------------------~wr~~f~~~~~~~~~~-~~~~l~~~~~~~~~~  159 (420)
                      ++++..+..+|..+|+++++.+                          +|+..|++.+++.++. .+.+++.++.+++..
T Consensus       210 ~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~~  289 (633)
T TIGR00805       210 IGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKALPKEGK  289 (633)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCccc
Confidence            9999999999999998887653                          1777788877776655 222332222111100


Q ss_pred             -HHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHh-hccccchHHHHHHHHHHHHHhcchhhHHHhHHHHHHhh
Q psy6665         160 -KSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMV-TMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDM  237 (420)
Q Consensus       160 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (420)
                       ...+..++...+ .        .+.+.+.+.....++..+ .+..++.+.++...+..+......+.+..|+|.|+++.
T Consensus       290 ~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~  360 (633)
T TIGR00805       290 RVNVDVHETEKLE-K--------SEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQ  360 (633)
T ss_pred             ccchhhhhhhccc-c--------cccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             000000000000 0        000000000001111111 11222334455555555555556778889999999875


Q ss_pred             -CC-cchHHHHHHHHHH-HHHHHHHHHHHhhhccCch
Q psy6665         238 -GS-RMNVYLATVLVGV-VRMVFGLLTSQLLRTYGRR  271 (420)
Q Consensus       238 -g~-~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g~~  271 (420)
                       |+ +.+++.......+ +.+++.+++|+++||++.+
T Consensus       361 ~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~  397 (633)
T TIGR00805       361 YGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLN  397 (633)
T ss_pred             cCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence             88 6777777666555 5689999999999999854

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.85  E-value=4.2e-19  Score=166.70  Aligned_cols=317  Identities=14%  Similarity=0.064  Sum_probs=189.4

Q ss_pred             hHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHHHHHHhh
Q psy6665           7 VYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFYVAISVI   83 (420)
Q Consensus         7 ~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l~G~~~~   83 (420)
                      .+.+..+...++..++.++ |+++|.||||+.++.+.++..+|++.++.+  ...++.+.            .+.|+|.|
T Consensus        79 ~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~------------~l~GvgaG  146 (599)
T PF06609_consen   79 NWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGM------------VLYGVGAG  146 (599)
T ss_pred             cchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHH------------HHHHHhhH
Confidence            3445666788899999999 999999999999999999999999999998  99999999            99999988


Q ss_pred             cccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccc---ccceeeecCcHH
Q psy6665          84 AMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIP---SPVWLLNKGRAN  156 (420)
Q Consensus        84 ~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~---~~~~l~~~~~~~  156 (420)
                       .... ....++|..|.|.|....++...........++.++..+    +|||.|++..+...+.   ...|+..+.+.+
T Consensus       147 -~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~  224 (599)
T PF06609_consen  147 -VQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQ  224 (599)
T ss_pred             -HHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCchhh
Confidence             7666 566799999999998887777665555555566666554    8999999888766554   111111111100


Q ss_pred             ------HHHHHHHHHhc-------------------chhhhhhhHHHHhhhc-------------cchhhhhhhh--HHH
Q psy6665         157 ------QALKSLKYLAR-------------------NYKEVKNKEQELKKMN-------------STKENQSLSA--RLI  196 (420)
Q Consensus       157 ------~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~-------------~~~~~~~~~~--~~~  196 (420)
                            ..++.++++.-                   ......++.+..-...             .+.....+.+  ..+
T Consensus       225 ~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~  304 (599)
T PF06609_consen  225 LHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHR  304 (599)
T ss_pred             hccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHH
Confidence                  00111111110                   0000000000000000             0000000111  112


Q ss_pred             HHhhccccchHHHHHHHHHHHHHhcchhhHHHhHHHHHHhh-CC-c---chHHHHHHHHHHHHHHHHHHHHHhhhccCch
Q psy6665         197 KMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDM-GS-R---MNVYLATVLVGVVRMVFGLLTSQLLRTYGRR  271 (420)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~-~---~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~  271 (420)
                      +++ +    ++.+...+...+.....++....+.|...... +. +   ...+......+++..++..+.+.+..+++|-
T Consensus       305 Lf~-~----~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~  379 (599)
T PF06609_consen  305 LFK-D----RRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHI  379 (599)
T ss_pred             Hhc-c----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccch
Confidence            222 1    12233333333333333555556666655543 22 1   2455667777888888999999999888875


Q ss_pred             hhH-hhhccc-------------hhHHHHHHHHHHHHHHhhch-hhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHH
Q psy6665         272 SLT-MFSQIE-------------KSLIPVFCILFYVAISVIGM-LSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFAL  336 (420)
Q Consensus       272 ~~~-~~~~~~-------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~  336 (420)
                      |.. +++..+             ++....+...++ .+.+.+. .........-..|++.-+++.|+..+++.+|+.++.
T Consensus       380 Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l-~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~  458 (599)
T PF06609_consen  380 KWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVL-AGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGY  458 (599)
T ss_pred             hHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHH-HHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHH
Confidence            443 344332             111112222222 2222232 333345556678999999999999999999999988


Q ss_pred             HHhHHHH
Q psy6665         337 QYYPWFK  343 (420)
Q Consensus       337 ~~~g~l~  343 (420)
                      .+...+.
T Consensus       459 aIy~~I~  465 (599)
T PF06609_consen  459 AIYNAIF  465 (599)
T ss_pred             HHHHHHH
Confidence            8875544

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.85  E-value=1.1e-18  Score=161.91  Aligned_cols=319  Identities=12%  Similarity=-0.035  Sum_probs=189.1

Q ss_pred             CCccchHHHH--HHHHHHHHHHHHHH--HHHHHhhcchhHHHHhhHHH-HHHHHHHHHh------HHHHHhhccccccch
Q psy6665           2 GSRMNVYLAT--VLVGVVRMVFGLLT--SQLLRTYGRRSLTMFSGLGM-AVCMTTSGYY------TQLIMTGQIEKSLIP   70 (420)
Q Consensus         2 ~~~~~~~~~~--~~~~~~g~~~~~~~--g~l~dr~Grr~~l~~~~~~~-~~~~~~~~~~------~~~~~~~r~~~~~~~   70 (420)
                      |.|.++....  .+...+...+.+++  ++..||+||||..++...+. ++.....+..      ..+++..-       
T Consensus        32 g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  104 (390)
T TIGR02718        32 GAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLL-------  104 (390)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHH-------
Confidence            3455555443  23445555555555  55789999999876654332 2122222211      11112222       


Q ss_pred             hHHHHHHHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhh----hhhHHHHHhHhhhcccc-c
Q psy6665          71 VFCILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAV----LHWRTVAWLSLAYILIP-S  145 (420)
Q Consensus        71 ~~~~~~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~----~~wr~~f~~~~~~~~~~-~  145 (420)
                           ++.++..+ ...+....+..|..++++++...+....+..+|..+++.....    +|||..|++.+++.++. .
T Consensus       105 -----~~~~~~~a-~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~  178 (390)
T TIGR02718       105 -----ACASLASA-TQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLV  178 (390)
T ss_pred             -----HHHHHHHH-HHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence                 55666666 6666678888899988888988888888888899888865444    49999999998876654 1


Q ss_pred             cceeeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhh
Q psy6665         146 PVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYI  225 (420)
Q Consensus       146 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (420)
                      +.+...+++.++                        ++  +++++..+.++.++ ++..+. .....++..    .....
T Consensus       179 ~~~~~~~~~~~~------------------------~~--~~~~~~~~~~~~l~-~~~~~~-~~~~~~l~~----~~~~~  226 (390)
T TIGR02718       179 CVLWLKDRAVAS------------------------PE--APLARRASLFRFFR-RPLAWS-LLALALLSA----MTAVS  226 (390)
T ss_pred             HHHHcCCCCcCc------------------------cc--cchhhHHHHHHHHc-CcCHHH-HHHHHHHHH----HHHHH
Confidence            111111111000                        00  00001122334443 332222 222222211    12344


Q ss_pred             HHHhHHHHHHhhCC-cchHHHHHHHHHH-HHHHHHHHHHHhhhccCchhhHhhhccch----------h------HHHHH
Q psy6665         226 TIFYAVQFLEDMGS-RMNVYLATVLVGV-VRMVFGLLTSQLLRTYGRRSLTMFSQIEK----------S------LIPVF  287 (420)
Q Consensus       226 ~~~~~~~~~~~~g~-~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g~~~~~~~~~~~~----------~------~~~~~  287 (420)
                      ...+.+.++++.|+ +++.+......+. ..+++.++.|++.||+|+|+.+..+..+.          .      .....
T Consensus       227 ~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (390)
T TIGR02718       227 GFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVA  306 (390)
T ss_pred             HHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHH
Confidence            55577788888888 6777777666654 56677899999999999998877665431          0      00000


Q ss_pred             HHHHHHHHHhhch-hhHHHHHhcccCCh-hhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHH
Q psy6665         288 CILFYVAISVIGM-LSIPWTMTAEIFPL-EIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIV  365 (420)
Q Consensus       288 ~~~~~~~~~~~~~-~~~~~~~~~~~~p~-~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  365 (420)
                      ........+..+. .+...+...+..++ +.+++.+++.+...+++..++|.+.|.+.|..| +...+...+++.+++.+
T Consensus       307 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G-~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       307 WSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG-YAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHH
Confidence            1111111111122 23334555555555 889999999999999999999999999999998 77888777766666554


Q ss_pred             H
Q psy6665         366 Y  366 (420)
Q Consensus       366 ~  366 (420)
                      .
T Consensus       386 ~  386 (390)
T TIGR02718       386 L  386 (390)
T ss_pred             H
Confidence            3

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.84  E-value=6.6e-19  Score=167.07  Aligned_cols=315  Identities=11%  Similarity=0.061  Sum_probs=179.4

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHH----hhcc-hhHHHHhhHHHHHHHHHHHHhHHHHHhhccccccchhHHHH
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLR----TYGR-RSLTMFSGLGMAVCMTTSGYYTQLIMTGQIEKSLIPVFCIL   75 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~d----r~Gr-r~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   75 (420)
                      |.+.......+.+.-+--++..|+ |.++|    |+|| |+.++.+.+..+++.+++......    -.....+.+...+
T Consensus        38 Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~----~~~~~~~~~~~~~  113 (473)
T PRK10429         38 GLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLF----EGTAQYVFVCVTY  113 (473)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCC----CccHHHHHHHHHH
Confidence            566777778888888888889999 99999    6699 666666777777665444321000    0000112223345


Q ss_pred             HHHHHHhhcccchhhhhhhhhcc-CccchhhhHhHHHHHHHHHHHHHHHHhhh----h-------hhHHHHHhHhhhccc
Q psy6665          76 FYVAISVIAMGPSPAIVYITEVA-RPDLRGALICIGPSITSLGMVIVYALGAV----L-------HWRTVAWLSLAYILI  143 (420)
Q Consensus        76 ~l~G~~~~~~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~lG~~~~~~~~~~----~-------~wr~~f~~~~~~~~~  143 (420)
                      ++.+++.. +..++..++..|.. ++++|.+..++...+.++|..+.+.+...    +       +|+....+.+++.++
T Consensus       114 ~l~~~~~t-~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~  192 (473)
T PRK10429        114 ILWGMTYT-IMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIV  192 (473)
T ss_pred             HHHHHHHH-HHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHH
Confidence            77788888 77777889999999 58999999998766666665544433221    1       467766666665554


Q ss_pred             c-ccceeeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcc
Q psy6665         144 P-SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAG  222 (420)
Q Consensus       144 ~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (420)
                      . ...++..+++.++.              +        .+  ++++++.+.++.++...+. ++....+....+.. ..
T Consensus       193 ~~~~~~~~~~e~~~~~--------------~--------~~--~~~~~~~~~~~~~~~~~~n-~~~~~ll~~~~~~~-~~  246 (473)
T PRK10429        193 STIITLRNVHEVYSSD--------------N--------QV--SAEGSHLTLKDIVALIYKN-DQLSCLLGMALAYN-IA  246 (473)
T ss_pred             HHHHHHcCceecCCcc--------------c--------cc--cccccCCCHHHHHHHHhcC-HHHHHHHHHHHHHH-HH
Confidence            3 11222122211000              0        00  0001112233333200011 11122111111111 12


Q ss_pred             hhhHHHhHHHHHHhh-CCcchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc----------------hhHHH
Q psy6665         223 IYITIFYAVQFLEDM-GSRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE----------------KSLIP  285 (420)
Q Consensus       223 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~----------------~~~~~  285 (420)
                      ......+.+.+.+.. +.....+.......+..+++.++.+++.||+|+|+.+..+..+                .+...
T Consensus       247 ~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (473)
T PRK10429        247 SNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALL  326 (473)
T ss_pred             HHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHH
Confidence            333344444444433 2233444555566688899999999999999999987655433                01111


Q ss_pred             HHHHHHHHHHHhhchhhHHHHHhcccCC-------hhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcC
Q psy6665         286 VFCILFYVAISVIGMLSIPWTMTAEIFP-------LEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVG  347 (420)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g  347 (420)
                      .....+..........+..+++.+|..+       .+..|..+|...+...++..+++.+.|.+.+..|
T Consensus       327 ~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G  395 (473)
T PRK10429        327 IVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG  395 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            1111122222222334566688888855       3334668999999999999999999999998777

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.83  E-value=8.9e-18  Score=155.72  Aligned_cols=358  Identities=14%  Similarity=0.119  Sum_probs=213.7

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHH----hhcchhHHHHh-hHHHHHHHHHHHHh--HHHHHhhccc-c--cc--
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLR----TYGRRSLTMFS-GLGMAVCMTTSGYY--TQLIMTGQIE-K--SL--   68 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~d----r~Grr~~l~~~-~~~~~~~~~~~~~~--~~~~~~~r~~-~--~~--   68 (420)
                      |.+.........+..+..++.+++ |+++|    |+|||+.++.+ .....++.++++++  ...++..+.+ .  .+  
T Consensus        35 g~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i  114 (477)
T TIGR01301        35 GIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAI  114 (477)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHH
Confidence            556677778888888999999999 99999    59999998875 56666666666665  3332222211 1  11  


Q ss_pred             chhHHHHHHHHHHhhcccchhhhhhhhhccCccch--hhhHhHHHHHHHHHHHHHHHHhhhh------------------
Q psy6665          69 IPVFCILFYVAISVIAMGPSPAIVYITEVARPDLR--GALICIGPSITSLGMVIVYALGAVL------------------  128 (420)
Q Consensus        69 ~~~~~~~~l~G~~~~~~~~~~~~~~i~e~~~~~~r--~~~~~~~~~~~~lG~~~~~~~~~~~------------------  128 (420)
                      ...+..+.+..++.. ...++..++++|.+|+++|  +.+.++.+...++|..+++.+++..                  
T Consensus       115 ~~~~i~~~lld~~~n-~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~  193 (477)
T TIGR01301       115 IVFVVGFWILDVANN-MLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSC  193 (477)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccccccc
Confidence            111222344556777 6666789999999998865  6799999999999999999888653                  


Q ss_pred             -hhHHHHHhHhhhcccc-ccceeeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccch
Q psy6665         129 -HWRTVAWLSLAYILIP-SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIK  206 (420)
Q Consensus       129 -~wr~~f~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (420)
                       +.|..|++.++..++. ....+..++++...++          +..  +++.  ++. ++.+.+..++++++..+..-+
T Consensus       194 ~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~----------~~~--~~~~--~~~-~~~~~~~~~~~i~~~~~~mP~  258 (477)
T TIGR01301       194 ANLKSCFLIDIILLAILTYIALSAVKENPLIGSD----------DFI--NSEA--APP-SKHGEEAFFGELFGAFKYLPR  258 (477)
T ss_pred             chHHHHHHHHHHHHHHHHHHHeeeeeccCCCccc----------cch--hhhc--ccc-cccchhhhHHHHHHHHHHCCH
Confidence             3466777776665554 2222333332210000          000  0000  000 011112234444441112222


Q ss_pred             HHHHHHHHHHHHHhcchhhHHHhHHHHHHhh--CC-c--c----h----HHHHHHHHHHHHHHHHHHHHHhhhccCc-hh
Q psy6665         207 PLLVITVLFALQQLAGIYITIFYAVQFLEDM--GS-R--M----N----VYLATVLVGVVRMVFGLLTSQLLRTYGR-RS  272 (420)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~-~--~----~----~~~~~~~~~~~~~~~~~~~g~l~d~~g~-~~  272 (420)
                      . +...+...++.+.+.+.+..|...+..+.  +- +  .    +    ..+....+++...+.+++..++.+|+|+ |+
T Consensus       259 ~-m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~  337 (477)
T TIGR01301       259 P-VWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKR  337 (477)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence            2 22233333334445666677777766542  21 1  0    1    2234455566666777788889999985 66


Q ss_pred             hHhhhccc-----------hh---------------------HHHHHHHHHHHHHHhhchhhHHHHHhcccCCh--hhhh
Q psy6665         273 LTMFSQIE-----------KS---------------------LIPVFCILFYVAISVIGMLSIPWTMTAEIFPL--EIRG  318 (420)
Q Consensus       273 ~~~~~~~~-----------~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~r~  318 (420)
                      ....+.++           ..                     ....+......+..-.....++++++++..|+  +..|
T Consensus       338 ~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G  417 (477)
T TIGR01301       338 LWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQG  417 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCc
Confidence            64555333           11                     01112222222222223467888999999885  4559


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhHHHHHhcCc-chHHHHHHHHHHHHHHHHhhhccccCCC
Q psy6665         319 IAQGLTFCLAHILMFFALQYYPWFKDSVGG-SAMVQWFFALISVISIVYVYIFLPETHG  376 (420)
Q Consensus       319 ~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (420)
                      ..+|+.|.+..+.+.+.....|.+.+..|+ ....+.+.++..+++.+.+++.+|+++.
T Consensus       418 ~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~  476 (477)
T TIGR01301       418 LSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV  476 (477)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            999999999999999999988987777773 3445566667777788888888887653

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PTZ00207 hypothetical protein; Provisional

Probab=99.83  E-value=2.2e-18  Score=162.99  Aligned_cols=353  Identities=14%  Similarity=0.075  Sum_probs=215.5

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--------HHHHHhhccccccchh
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--------TQLIMTGQIEKSLIPV   71 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--------~~~~~~~r~~~~~~~~   71 (420)
                      +|.+.++.....+++. ......++ |+++||+|||++++++.+++++++++++++        ++.+++.|        
T Consensus        57 lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r--------  127 (591)
T PTZ00207         57 YNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYN--------  127 (591)
T ss_pred             hCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHH--------
Confidence            3566666666665533 33456667 999999999999999999999999998884        67788899        


Q ss_pred             HHHHHHHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHH-HHHHhhhh--hhHHHHHhHhhhcccc----
Q psy6665          72 FCILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVI-VYALGAVL--HWRTVAWLSLAYILIP----  144 (420)
Q Consensus        72 ~~~~~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~-~~~~~~~~--~wr~~f~~~~~~~~~~----  144 (420)
                          ++.|+|.+ ...+.+...+.+|+| ++||++.++...+.++|..+ +++....+  +|+..|++.+++.++.    
T Consensus       128 ----~l~G~G~~-~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~  201 (591)
T PTZ00207        128 ----GLMTLGCM-LFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILA  201 (591)
T ss_pred             ----HHHHHHHH-HHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence                99999999 776668889999996 78999999999999999975 44444454  7888888777766655    


Q ss_pred             --------ccceeeecCcHHHHHHHHHHHhcc--------------------------------------hhh-------
Q psy6665         145 --------SPVWLLNKGRANQALKSLKYLARN--------------------------------------YKE-------  171 (420)
Q Consensus       145 --------~~~~l~~~~~~~~~~~~~~~~~~~--------------------------------------~~~-------  171 (420)
                              .+++...+++.+++++..++..++                                      .+.       
T Consensus       202 ~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~  281 (591)
T PTZ00207        202 IVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAV  281 (591)
T ss_pred             HhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence                    222222222112222221110000                                      000       


Q ss_pred             ------------------------h-hhhHHHHhhhcc----c-hh------------hhhhhhHHHHHhhccccchHHH
Q psy6665         172 ------------------------V-KNKEQELKKMNS----T-KE------------NQSLSARLIKMVTMATGIKPLL  209 (420)
Q Consensus       172 ------------------------~-~~~~~~~~~~~~----~-~~------------~~~~~~~~~~~~~~~~~~~~~~  209 (420)
                                              . +.+.+..+..+.    . ++            ++..+++.+      ..++.-+
T Consensus       282 v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q------~l~~~d~  355 (591)
T PTZ00207        282 TVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIE------GLKTARL  355 (591)
T ss_pred             HHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHH------HHhchhH
Confidence                                    0 000000000000    0 00            000001111      2233445


Q ss_pred             HHHHHHHHHHhcchhhHHHhHHHHHHhh-CC-cch--HHHHHHHHHHHHHHHHHHHHHhhhccCchh----h---Hh--h
Q psy6665         210 VITVLFALQQLAGIYITIFYAVQFLEDM-GS-RMN--VYLATVLVGVVRMVFGLLTSQLLRTYGRRS----L---TM--F  276 (420)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~-~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~----~---~~--~  276 (420)
                      |+.+...++.........+.+.++.+.. |. .++  .....++.++.+.+|++..|+++....+|+    .   +.  +
T Consensus       356 Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~  435 (591)
T PTZ00207        356 WCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFI  435 (591)
T ss_pred             HHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHH
Confidence            5555555555555666777778888887 66 333  222678889999999999999873332222    1   11  1


Q ss_pred             hccc----------hhHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHH-HHHhHHHHHh
Q psy6665         277 SQIE----------KSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFA-LQYYPWFKDS  345 (420)
Q Consensus       277 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~-~~~~g~l~~~  345 (420)
                      ..+.          .+...+.+..++.+.......++..+.++|+|. ++-|+-+-+.....-+|+.+- -.+.|.+.|+
T Consensus       436 ~~~~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~  514 (591)
T PTZ00207        436 PSVCIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQ  514 (591)
T ss_pred             HHHHHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            1111          111222223333333333345677789999999 777877777777777777654 5667777765


Q ss_pred             cC----c--------chHHHHHHHHHHHHHHHHhhhccccCC
Q psy6665         346 VG----G--------SAMVQWFFALISVISIVYVYIFLPETH  375 (420)
Q Consensus       346 ~g----~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (420)
                      -.    +        +..+|++.+++++++.+....+.-+++
T Consensus       515 ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r  556 (591)
T PTZ00207        515 QADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYR  556 (591)
T ss_pred             HHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehH
Confidence            32    1        467899999999999888765554444

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.82  E-value=3.1e-18  Score=162.79  Aligned_cols=129  Identities=12%  Similarity=0.064  Sum_probs=101.5

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHHh-hcchhHHHHhhHHHHHHHHHHHHh---HHHHHhhccccccchhHHHHH
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLRT-YGRRSLTMFSGLGMAVCMTTSGYY---TQLIMTGQIEKSLIPVFCILF   76 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~r~~~~~~~~~~~~~   76 (420)
                      |.+.++.....+.+........++ |+++|| +|||++++.+.++.+++.++++++   .+.+.+.|            +
T Consensus        53 g~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~------------~  120 (500)
T PRK09584         53 GMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGM------------A  120 (500)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH------------H
Confidence            455555555555554444444567 999999 599999999999999998888876   45667788            9


Q ss_pred             HHHHHhhcccchhhhhhhhhccCccc--hhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhccc
Q psy6665          77 YVAISVIAMGPSPAIVYITEVARPDL--RGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILI  143 (420)
Q Consensus        77 l~G~~~~~~~~~~~~~~i~e~~~~~~--r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~  143 (420)
                      ++|++.| ...+...+++.|++|+++  |..+.++++.+.++|..++|.+++++    |||+.|++.++..++
T Consensus       121 l~gig~g-~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i  192 (500)
T PRK09584        121 TIAVGNG-LFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLI  192 (500)
T ss_pred             HHHHhhh-cccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence            9999999 777778899999998654  45678888999999999999888876    899999988754333

>PRK09669 putative symporter YagG; Provisional

Probab=99.81  E-value=5.2e-18  Score=159.94  Aligned_cols=311  Identities=11%  Similarity=0.101  Sum_probs=179.1

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHh----hcc-hhHHHHhhHHHHHHHHHHHHhHHHHHhhccccccchhHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRT----YGR-RSLTMFSGLGMAVCMTTSGYYTQLIMTGQIEKSLIPVFCI   74 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr----~Gr-r~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~   74 (420)
                      +|.+.......+.+..+..++..|+ |+++||    +|| |+.++.+.+..+++.++...... +  .. ..........
T Consensus        40 ~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~-~--~~-~~~~~~~~~~  115 (444)
T PRK09669         40 FGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPD-F--GA-TGKIIYACVT  115 (444)
T ss_pred             cCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCC-C--Cc-chHHHHHHHH
Confidence            3677788888899999999999999 999998    887 45566677777666544332200 0  00 0011222233


Q ss_pred             HHHHHHHhhcccchhhhhhhhhcc-CccchhhhHhHHHHHHHHHHHHHHHHhhh-----------hhhHHHHHhHhhhcc
Q psy6665          75 LFYVAISVIAMGPSPAIVYITEVA-RPDLRGALICIGPSITSLGMVIVYALGAV-----------LHWRTVAWLSLAYIL  142 (420)
Q Consensus        75 ~~l~G~~~~~~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~lG~~~~~~~~~~-----------~~wr~~f~~~~~~~~  142 (420)
                      +++.+.+.. ...++..++.+|+. ++++|.+..++...+..+|..+++.+...           .+|+..+.+.+++++
T Consensus       116 ~~l~~~~~t-~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~  194 (444)
T PRK09669        116 YILLSLVYT-AINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGV  194 (444)
T ss_pred             HHHHHHHHH-hhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHH
Confidence            467777777 55555889999998 45889998888887777777666543322           168888777776665


Q ss_pred             cc-ccceeeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhc
Q psy6665         143 IP-SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLA  221 (420)
Q Consensus       143 ~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (420)
                      +. ...++..+++.++.                       +  +++.+..+..+..++ ++.++. .....++....   
T Consensus       195 v~~~~~~~~~~e~~~~~-----------------------~--~~~~~~~~~~~~~~~-n~~~~~-l~~~~~~~~~~---  244 (444)
T PRK09669        195 VLFFCCFFMTKERYTPE-----------------------V--DNSSSVWKDLKLLLG-NSQWRI-MFIFNVVLLTA---  244 (444)
T ss_pred             HHHHHHhCCeEEecCCC-----------------------C--cCCCCHHHHHHHHhC-CchHHH-HHHHHHHHHHH---
Confidence            54 11122222211000                       0  000111223333333 333222 22221111111   


Q ss_pred             chhhHHHhHHHHHHhh-CCcchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-------------hhHHHHH
Q psy6665         222 GIYITIFYAVQFLEDM-GSRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-------------KSLIPVF  287 (420)
Q Consensus       222 ~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-------------~~~~~~~  287 (420)
                       ........+.+.+.. +.+...........+..+++.++.++++||+|+|+.+..+...             .+.....
T Consensus       245 -~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (444)
T PRK09669        245 -VVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIF  323 (444)
T ss_pred             -HHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHH
Confidence             111112222222221 2222333344455577788889999999999999887655543             1111122


Q ss_pred             HHHHHHHHHhhchhhHHHHHhcccCC-------hhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcC
Q psy6665         288 CILFYVAISVIGMLSIPWTMTAEIFP-------LEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVG  347 (420)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g  347 (420)
                      ......+.......+..+++.+|..+       .+..|..+|..++...+|..+++.+.|.+.+..|
T Consensus       324 ~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G  390 (444)
T PRK09669        324 ALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD  390 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            22222233333445677788888875       2334677899999999999999999999999877

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.79  E-value=3.4e-17  Score=144.01  Aligned_cols=336  Identities=13%  Similarity=0.094  Sum_probs=217.3

Q ss_pred             chHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhh-HHHHHHHHHHHHhHHHHHhhccccccchhHHHHHHHHHHhh
Q psy6665           6 NVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSG-LGMAVCMTTSGYYTQLIMTGQIEKSLIPVFCILFYVAISVI   83 (420)
Q Consensus         6 ~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~l~G~~~~   83 (420)
                      +.+..+.++..+-.++-+|. |.++|+.|+||..+... .+..++.+...+...       .-.+...++++++..++..
T Consensus        58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~-------~s~~~~~l~~~il~~i~~~  130 (438)
T COG2270          58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPP-------GSYLLLLLLFLILASIGFE  130 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCC-------CchHHHHHHHHHHHHHhcc
Confidence            44556666666666777777 99999999776655544 444444444443300       0112223344588888888


Q ss_pred             cccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----------------------hhHHHHHhHhhhc
Q psy6665          84 AMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----------------------HWRTVAWLSLAYI  141 (420)
Q Consensus        84 ~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----------------------~wr~~f~~~~~~~  141 (420)
                       ...+...+++.+..++++-++..+.-.....+|..+.-......                      .-|..+.+.++..
T Consensus       131 -~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~  209 (438)
T COG2270         131 -FSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWW  209 (438)
T ss_pred             -hhheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHH
Confidence             77777999999999999989888887777777766655443111                      2455555555554


Q ss_pred             ccc-ccceeeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHh
Q psy6665         142 LIP-SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQL  220 (420)
Q Consensus       142 ~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (420)
                      ++. .|.++..++.....              ....+..    ...-++-+.+.++.++      ++-+..++...+...
T Consensus       210 li~~iPm~~~v~~~~~~~--------------~~~~~~l----~~g~k~L~~t~k~i~~------~~~i~~FLiA~~~~~  265 (438)
T COG2270         210 LLFALPMILNVHDAEKIS--------------SPPPTAL----RNGFKELKSTFKEIRG------RKNLVLFLIARFFYI  265 (438)
T ss_pred             HHHHhHHHhccccccccc--------------ccchHHH----HHHHHHHHHHHHHHhc------ccchHHHHHHHHHHH
Confidence            444 33333332221100              0000000    0000111222333322      223333444445555


Q ss_pred             cchhhHHHhHHHHHH-hhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHH
Q psy6665         221 AGIYITIFYAVQFLE-DMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVF  287 (420)
Q Consensus       221 ~~~~~~~~~~~~~~~-~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~  287 (420)
                      .+..........|.. +.|+ ..+.........+..++|+++.|++.||+|.|+++..+.++           ......+
T Consensus       266 DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~  345 (438)
T COG2270         266 DGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFW  345 (438)
T ss_pred             hhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHH
Confidence            567788888888887 4488 78888888999999999999999999999999888877776           2222233


Q ss_pred             HHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHh
Q psy6665         288 CILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYV  367 (420)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  367 (420)
                      ...++.+.+..+....+-++..+++|+++.++.+|+++..++..++++|...+.+.+.+|+.+..+..+.++..++.++.
T Consensus       346 i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L  425 (438)
T COG2270         346 ILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLL  425 (438)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhE
Confidence            33344444445567777799999999999999999999999999999999999999999966666666666666666554


Q ss_pred             hhccccC
Q psy6665         368 YIFLPET  374 (420)
Q Consensus       368 ~~~~~~~  374 (420)
                       ..+|+.
T Consensus       426 -~~v~~~  431 (438)
T COG2270         426 -LRVKVP  431 (438)
T ss_pred             -EeecCC
Confidence             345544

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.78  E-value=1.5e-16  Score=148.19  Aligned_cols=128  Identities=13%  Similarity=0.053  Sum_probs=101.8

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHHhh-cchhHHHHhhHHHHHHHHHHHHh---HHHHHhhccccccchhHHHHH
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLRTY-GRRSLTMFSGLGMAVCMTTSGYY---TQLIMTGQIEKSLIPVFCILF   76 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~r~~~~~~~~~~~~~   76 (420)
                      |.+..+.....+.+.....+++++ |+++||+ |||++++++.++..++.++++..   ...+.+..            .
T Consensus        41 gls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l------------~  108 (493)
T PRK15462         41 KYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSL------------A  108 (493)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH------------H
Confidence            566677777888888888889999 9999999 99999999999999988766543   12233333            4


Q ss_pred             HHHHHhhcccchhhhhhhhhccCcc--chhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcc
Q psy6665          77 YVAISVIAMGPSPAIVYITEVARPD--LRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYIL  142 (420)
Q Consensus        77 l~G~~~~~~~~~~~~~~i~e~~~~~--~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~  142 (420)
                      +.++|.| ...+...++++|.+|++  +|..+.++...+.++|..++|.+.+.+    ||++.|.+.++..+
T Consensus       109 li~iG~G-~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~  179 (493)
T PRK15462        109 IIVCGYG-LFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMI  179 (493)
T ss_pred             HHHHhcc-cccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHH
Confidence            5556666 55565788999999875  699999999999999999999998887    89999988765443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.77  E-value=1.3e-16  Score=143.54  Aligned_cols=342  Identities=12%  Similarity=0.059  Sum_probs=182.7

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHH--HHHHHHHhHHHHHhhccccccchhHHH-HHH
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAV--CMTTSGYYTQLIMTGQIEKSLIPVFCI-LFY   77 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~l   77 (420)
                      |.+..+...++++..+...+.+++ |.++||+|.||-++.......+  +.+.. +.+.-++-..    ....+.+ .+.
T Consensus        39 GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~-~v~~pll~~n----~~lg~iig~i~  113 (412)
T PF01306_consen   39 GLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFI-YVFGPLLQSN----FWLGAIIGGIY  113 (412)
T ss_dssp             ---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHH-HTHHHHHHTT-----HHHHHHTTTT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH----HHHHHHHHHHH
Confidence            567788899999999999999999 9999999977765544332221  21111 0111122222    0000000 022


Q ss_pred             HHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh---hhHHHHHhHhhhcccc-ccceeeecC
Q psy6665          78 VAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL---HWRTVAWLSLAYILIP-SPVWLLNKG  153 (420)
Q Consensus        78 ~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~---~wr~~f~~~~~~~~~~-~~~~l~~~~  153 (420)
                      .|+... ...+..-+++.++.  ++.+.-.|-.-...++|.+++..+++.+   +-+..||+....+++. ...++.+++
T Consensus       114 l~~~f~-~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~il~lll~~~~~~  190 (412)
T PF01306_consen  114 LGLVFN-AGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNINPNIIFWIASAAAIILLLLLLLLKPD  190 (412)
T ss_dssp             TTTTTT-THHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---
T ss_pred             HHHHHc-ccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeeeCccHHHHHHHHHHHHHHHHHHHcCCc
Confidence            222222 22222334443333  2223334445556666666666666655   4456666555443332 001111111


Q ss_pred             cHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhHHHH
Q psy6665         154 RANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQF  233 (420)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (420)
                      +.++.+            .         .+....++++.+.++..+   .++.+.++.+.+......+.+..+-...+.|
T Consensus       191 ~~~~~~------------~---------~~~~~~~~~~~~~~~~~~---l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y  246 (412)
T PF01306_consen  191 VPPQAE------------V---------ADALGAKKDKVSLKDVLS---LFKMRNFWFFVLFVIGVAAIYDVFDQQFPIY  246 (412)
T ss_dssp             SSSSS-------------S---------STTSSS------HHHHHH---HTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Cchhhh------------h---------hcccccCCCCCcHHHHHH---HhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111000            0         111111222333444443   1122223333332222222244444445555


Q ss_pred             HHhh----CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHHHHHHHh
Q psy6665         234 LEDM----GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILFYVAISV  297 (420)
Q Consensus       234 ~~~~----g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~  297 (420)
                      +...    +. ....+...+...+.+++...+..++.+|+|.|+.++++..+           ++.+.+...-.+-+.-.
T Consensus       247 ~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~  326 (412)
T PF01306_consen  247 FASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEF  326 (412)
T ss_dssp             HHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHH
T ss_pred             HHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence            5542    33 33456677778889999999999999999999999888777           22222322222222221


Q ss_pred             hchhhHHHHHhcccCChhhhhhhHHHH-HHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhccccCCC
Q psy6665         298 IGMLSIPWTMTAEIFPLEIRGIAQGLT-FCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFLPETHG  376 (420)
Q Consensus       298 ~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (420)
                      ........-|+.+.+|++..++...+. +....++..+.+.+.|.+.|+.| +...+++.+.+.+...++..+.+++.++
T Consensus       327 ~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G-~~~tylimg~iv~~~~li~~f~l~~~~~  405 (412)
T PF01306_consen  327 PLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG-FQHTYLIMGLIVLPFTLISAFTLKKDKK  405 (412)
T ss_dssp             HHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred             HHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC-cHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence            122233358999999999999999885 57788999999999999999999 8888999888888877777776655443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.76  E-value=4.4e-17  Score=152.91  Aligned_cols=313  Identities=16%  Similarity=0.146  Sum_probs=195.7

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHH----hhcchhHH-HHhhHHHHHHHHHHHHh-HHHHHhhccccccchhHHH
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLR----TYGRRSLT-MFSGLGMAVCMTTSGYY-TQLIMTGQIEKSLIPVFCI   74 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~d----r~Grr~~l-~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~   74 (420)
                      |.+.........+.-+-.++..|+ |.++|    |+||||.. +.+.+..+++.+++... ....-   ...........
T Consensus        33 gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~---~~~~~~~~~~~  109 (428)
T PF13347_consen   33 GLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLS---FTAKLVWLFVF  109 (428)
T ss_pred             CCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhh---hhhHHHHHHHH
Confidence            455566666666777777777788 99999    89975554 45777777776665532 10000   00011222334


Q ss_pred             HHHHHHHhhcccchhhhhhhhhccC-ccchhhhHhHHHHHHHHHHHHHHHHhhhh-----------hhHHHHHhHhhhcc
Q psy6665          75 LFYVAISVIAMGPSPAIVYITEVAR-PDLRGALICIGPSITSLGMVIVYALGAVL-----------HWRTVAWLSLAYIL  142 (420)
Q Consensus        75 ~~l~G~~~~~~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~lG~~~~~~~~~~~-----------~wr~~f~~~~~~~~  142 (420)
                      +++..++.. ....+..++..|+.+ +++|.+..+....+..+|.++...+...+           +|++..++.+++.+
T Consensus       110 ~~l~~~~~t-~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~  188 (428)
T PF13347_consen  110 YILFDIAYT-FVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGL  188 (428)
T ss_pred             HHHHHHhhh-hccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHH
Confidence            477789999 777779999999998 47899999999888888886555444432           58988888888777


Q ss_pred             cc-ccceeeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhc
Q psy6665         143 IP-SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLA  221 (420)
Q Consensus       143 ~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (420)
                      +. ...+...|++.++.                       ++.+++.+-++..++.++ ++.++ .......+.    ..
T Consensus       189 v~~~i~~~~~ke~~~~~-----------------------~~~~~~~~~~~~~~~~~~-nr~~~-~l~~~~~~~----~~  239 (428)
T PF13347_consen  189 VFFLITFFFVKERSVEV-----------------------TEQEKKISLRDSLRSLFR-NRPFR-ILLLAFFLQ----WL  239 (428)
T ss_pred             HHhhhhhheeeeccccc-----------------------cccccccccccchhhhcc-cchHH-HHHHHHHHH----Hh
Confidence            66 11222222200000                       000111111223333333 32222 222222222    22


Q ss_pred             chhhHHHhHHHHHHhh-CCcchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------h--hHHHHH
Q psy6665         222 GIYITIFYAVQFLEDM-GSRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------K--SLIPVF  287 (420)
Q Consensus       222 ~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~--~~~~~~  287 (420)
                      .........+.+.+.. +.+...+.......+..+++.++.++++||+|+|+.+..+..+           .  +.....
T Consensus       240 ~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (428)
T PF13347_consen  240 AFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVL  319 (428)
T ss_pred             hhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHH
Confidence            2333444555555554 4445566667778889999999999999999999988877776           2  233333


Q ss_pred             HHHHHHHHHhhchhhHHHHHhcccCCh-------hhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcC
Q psy6665         288 CILFYVAISVIGMLSIPWTMTAEIFPL-------EIRGIAQGLTFCLAHILMFFALQYYPWFKDSVG  347 (420)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g  347 (420)
                      ......+..........+++.+|+.+.       +..|..+|+.++...++..+++.+.+.+.+..|
T Consensus       320 i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G  386 (428)
T PF13347_consen  320 ILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG  386 (428)
T ss_pred             HHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence            333333333334456777888888763       345889999999999999999999999988776

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.76  E-value=1.2e-15  Score=140.00  Aligned_cols=328  Identities=13%  Similarity=0.116  Sum_probs=192.5

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHHhhc-chhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHH
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYG-RRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFY   77 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~G-rr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l   77 (420)
                      |.|..+.....++..+..++++++ |.++||++ +|+.+.+..++.++........  ++.+++.-            ++
T Consensus        33 G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~------------~l  100 (400)
T PF03825_consen   33 GFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIM------------LL  100 (400)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH------------HH
Confidence            557788899999999999999999 99999987 4777767666666655444444  66555555            67


Q ss_pred             HHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHH-----Hhhhhhh---HHHHHhHhhhcccccccee
Q psy6665          78 VAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYA-----LGAVLHW---RTVAWLSLAYILIPSPVWL  149 (420)
Q Consensus        78 ~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~-----~~~~~~w---r~~f~~~~~~~~~~~~~~l  149 (420)
                      ..+... ...+...++..+...+  +++-.+-.-...++|..++..     +....++   ...+++.+...++....-+
T Consensus       101 ~~~~~~-p~~pl~dsi~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l  177 (400)
T PF03825_consen  101 FSFFFS-PTMPLSDSIALSYLGD--RGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFAL  177 (400)
T ss_pred             HHHHHc-cHHHHHHHHHHHHccc--ccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHH
Confidence            777777 6666677777777752  333344444444454444432     2222222   2344444433322200000


Q ss_pred             eecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHh
Q psy6665         150 LNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFY  229 (420)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (420)
                      ..++.+.+.              +        .+...++....+..++++ +++..     .+++..+...........|
T Consensus       178 ~lp~~~~~~--------------~--------~~~~~~~~~~~~~~~llk-~~~~~-----~Fll~~~l~~~~~~~~~~f  229 (400)
T PF03825_consen  178 FLPKTPPKR--------------S--------AKESVKKLLGLDALKLLK-NPRFL-----VFLLAAFLIGISHAAYYTF  229 (400)
T ss_pred             hCCCCcccc--------------c--------cCCCcccccchHHHHHhc-CccHH-----HHHHHHHHHHHHHHHHHHH
Confidence            001110000              0        000000001111223333 32222     2222222222235567788


Q ss_pred             HHHHHHhhC-C-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc------------hhHHHHHHHHHH---
Q psy6665         230 AVQFLEDMG-S-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE------------KSLIPVFCILFY---  292 (420)
Q Consensus       230 ~~~~~~~~g-~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~------------~~~~~~~~~~~~---  292 (420)
                      .+.|+++.| . ....+.......+.+++.....+++.+|+|.|+++.++...            +++.........   
T Consensus       230 ~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~  309 (400)
T PF03825_consen  230 FSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQL  309 (400)
T ss_pred             HHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHh
Confidence            899999986 6 55667677788899999999999999999999999988877            111111111111   


Q ss_pred             -HHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHH-HHHHHHHHHHhHHHHHhcCcchH------HHHHHHHHHHHHH
Q psy6665         293 -VAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLA-HILMFFALQYYPWFKDSVGGSAM------VQWFFALISVISI  364 (420)
Q Consensus       293 -~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~-~~~~~~~~~~~g~l~~~~g~~~~------~~~~~~~~~~~~~  364 (420)
                       -+............++.+..|++.|+++.++++... .+|..++..+.|++.|+.| ...      .+.+.+++.++..
T Consensus       310 lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g-~~~~~~~~~~~~v~a~~~~~~~  388 (400)
T PF03825_consen  310 LHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG-ARGMFDWSAVFLVFAVMALVIL  388 (400)
T ss_pred             hhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-chhhhhHHHHHHHHHHHHHHHH
Confidence             121111234455689999999999999999988864 6899999999999999988 443      2333444444444


Q ss_pred             HHhhhcccc
Q psy6665         365 VYVYIFLPE  373 (420)
Q Consensus       365 ~~~~~~~~~  373 (420)
                      ++.+++.||
T Consensus       389 ~~f~~~fk~  397 (400)
T PF03825_consen  389 VLFVILFKP  397 (400)
T ss_pred             HHHHhhccC
Confidence            444344443

>PRK11462 putative transporter; Provisional

Probab=99.75  E-value=8.2e-16  Score=144.95  Aligned_cols=309  Identities=12%  Similarity=0.077  Sum_probs=174.6

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHHh----hcch-hHHHHhhHHHHHHHHHHHHhHHHHHhhccccc-cchhHHH
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLRT----YGRR-SLTMFSGLGMAVCMTTSGYYTQLIMTGQIEKS-LIPVFCI   74 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr----~Grr-~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~   74 (420)
                      |.+.......+.+.-+--++.-|+ |.++||    +||| +.++++.+..+++.+++.....     -.... .+.+...
T Consensus        41 Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~-----~s~~~~~~y~~~~  115 (460)
T PRK11462         41 GIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPD-----LSMNGKMIYAAIT  115 (460)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCC-----CCcchHHHHHHHH
Confidence            556666777777777778888899 999995    7985 5555576777776554432210     00011 2233345


Q ss_pred             HHHHHHHhhcccchhhhhhhhhccC-ccchhhhHhHHHHHHHHHHHHHHHHhhhh-----------hhHHHHHhHhhhcc
Q psy6665          75 LFYVAISVIAMGPSPAIVYITEVAR-PDLRGALICIGPSITSLGMVIVYALGAVL-----------HWRTVAWLSLAYIL  142 (420)
Q Consensus        75 ~~l~G~~~~~~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~lG~~~~~~~~~~~-----------~wr~~f~~~~~~~~  142 (420)
                      +++..++.. +...+-.++..|..+ ++||++..++...+..+|..+++.+...+           +|+....+.+++.+
T Consensus       116 ~~~~~~~~t-~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~  194 (460)
T PRK11462        116 YTLLTLLYT-VVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAF  194 (460)
T ss_pred             HHHHHHHHH-HHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHH
Confidence            677788888 777778999999998 68899999999999888877776554322           47776666666554


Q ss_pred             ccc-cceeeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhc
Q psy6665         143 IPS-PVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLA  221 (420)
Q Consensus       143 ~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (420)
                      +.. ..+...|++.++                        +  +++.+.++..+..++ ++.+ +.......+.......
T Consensus       195 i~~~i~~~~~kE~~~~------------------------~--~~~~~~~~~l~~~~~-Nk~~-~~l~~~~~~~~~~~~~  246 (460)
T PRK11462        195 MMLAFCFFTTKERVEA------------------------P--PTTTSMREDLRDIWQ-NDQW-RIVGLLTIFNILAVCV  246 (460)
T ss_pred             HHHHHHHhcceeccCC------------------------C--ccCCCHHHHHHHHhC-ChHH-HHHHHHHHHHHHHHHH
Confidence            431 111111211100                        0  000001122233332 2222 2222222222221111


Q ss_pred             chhhHHHhHHHHHHhhCCcchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc------------hh-HHHHHH
Q psy6665         222 GIYITIFYAVQFLEDMGSRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE------------KS-LIPVFC  288 (420)
Q Consensus       222 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~------------~~-~~~~~~  288 (420)
                       ......|...|..  +.+...........+..+++.+++++++||+++|+....+...            .. ......
T Consensus       247 -~~~~~~y~~~y~~--g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (460)
T PRK11462        247 -RGGAMMYYVTWIL--GTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFV  323 (460)
T ss_pred             -HHhHhhhhhhhhc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence             1222223333321  3322334455666788889999999999999999876533221            11 111111


Q ss_pred             HHHHHHHHhhchhhHHHHHhcccCC-------hhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcC
Q psy6665         289 ILFYVAISVIGMLSIPWTMTAEIFP-------LEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVG  347 (420)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g  347 (420)
                      ..+..+.......+..+++..|..+       .+..|..++...+...++..+++.+.|.+.+..|
T Consensus       324 ~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~G  389 (460)
T PRK11462        324 FIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGG  389 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            1112222222234455677777654       2333555677778999999999999999888766

>PRK09848 glucuronide transporter; Provisional

Probab=99.75  E-value=6.8e-16  Score=145.82  Aligned_cols=308  Identities=11%  Similarity=0.047  Sum_probs=169.8

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHHhh----cchhHH-HHhhHHHHHHHHHHHHhHHHHHhhccccccchhHHHH
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLRTY----GRRSLT-MFSGLGMAVCMTTSGYYTQLIMTGQIEKSLIPVFCIL   75 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~----Grr~~l-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   75 (420)
                      |.+............+..++..++ |+++||.    |||+.+ +.+.+...+..++.......   .-...........+
T Consensus        40 gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  116 (448)
T PRK09848         40 GVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTD---WSHSSKVVYAYLTY  116 (448)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCC---CCcchHHHHHHHHH
Confidence            566777888888999999999999 9999996    777655 55555454444332110000   00001112223345


Q ss_pred             HHHHHHhhcccchhhhhhhhhccCc-cchhhhHhHHHHHHH-----HHHHHHHHHhhhh---------hhHHHHHhHhhh
Q psy6665          76 FYVAISVIAMGPSPAIVYITEVARP-DLRGALICIGPSITS-----LGMVIVYALGAVL---------HWRTVAWLSLAY  140 (420)
Q Consensus        76 ~l~G~~~~~~~~~~~~~~i~e~~~~-~~r~~~~~~~~~~~~-----lG~~~~~~~~~~~---------~wr~~f~~~~~~  140 (420)
                      ++.+++.+ ...++..++..|..++ ++|.+..++-..+.+     +|..++|.++...         .|+..+.+.+.+
T Consensus       117 ~~~~~~~~-~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~  195 (448)
T PRK09848        117 MGLGLCYS-LVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMV  195 (448)
T ss_pred             HHHHHHHH-HhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHH
Confidence            77888888 6666677777777654 678888776654433     4555666655432         344333333322


Q ss_pred             ccccccceeeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHh
Q psy6665         141 ILIPSPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQL  220 (420)
Q Consensus       141 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (420)
                      ..+.  .+...+++.+                         ++ .++...+..++..++ ++.++.     .....+...
T Consensus       196 ~~~~--~~~~~~e~~~-------------------------~~-~~~~~~~~~~~~l~~-n~~f~~-----~~~~~~~~~  241 (448)
T PRK09848        196 LYFI--CFKSTRENVV-------------------------RI-VAQPSLKISLQTLKR-NRPLFM-----LCIGALCVL  241 (448)
T ss_pred             HHHH--HHcCcEeccC-------------------------CC-ccCCCHHHHHHHHhC-CchHHH-----HHHHHHHHH
Confidence            2221  1111111100                         00 000011222333443 332222     111112122


Q ss_pred             cchhhHHHhHHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-------------hhHHH
Q psy6665         221 AGIYITIFYAVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-------------KSLIP  285 (420)
Q Consensus       221 ~~~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-------------~~~~~  285 (420)
                      ..........|.++++. |. +...........+..+++.++.+++.||+++|+.+..+..+             .+...
T Consensus       242 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~  321 (448)
T PRK09848        242 ISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPV  321 (448)
T ss_pred             HHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHH
Confidence            22334445566666654 55 33333333334566788899999999999999988776654             11111


Q ss_pred             HHHHHHHHHHHhhchhhHHHHHhcccCChh-------hhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcC
Q psy6665         286 VFCILFYVAISVIGMLSIPWTMTAEIFPLE-------IRGIAQGLTFCLAHILMFFALQYYPWFKDSVG  347 (420)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g  347 (420)
                      ................+...++..|..|.+       .+|...|+.+....+|..+++.+.+.+.+..|
T Consensus       322 ~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G  390 (448)
T PRK09848        322 ALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSG  390 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            111122222222223455667777877643       45899999999999999999999999888766

>KOG4686|consensus

Probab=99.75  E-value=3.4e-18  Score=141.29  Aligned_cols=306  Identities=14%  Similarity=0.037  Sum_probs=192.5

Q ss_pred             hHHHHHHHHHHHHHHHHHH-HHHHHh-hcchhHHHHhhHHHHHHHHHHHHh-----HHHHHhhccccccchhHHHHHHHH
Q psy6665           7 VYLATVLVGVVRMVFGLLT-SQLLRT-YGRRSLTMFSGLGMAVCMTTSGYY-----TQLIMTGQIEKSLIPVFCILFYVA   79 (420)
Q Consensus         7 ~~~~~~~~~~~g~~~~~~~-g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~r~~~~~~~~~~~~~l~G   79 (420)
                      +..+..+++..-.++-+++ |++.|| +|-|..-++-.+...++-++++..     +|++..+|            ++.|
T Consensus        80 kftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GR------------F~FG  147 (459)
T KOG4686|consen   80 KFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGR------------FLFG  147 (459)
T ss_pred             eeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhh------------eeec
Confidence            3344455555555666778 999997 888887777777777777776654     99999999            9999


Q ss_pred             HHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----h-------hHH--HHHhHhhhcccccc
Q psy6665          80 ISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----H-------WRT--VAWLSLAYILIPSP  146 (420)
Q Consensus        80 ~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~-------wr~--~f~~~~~~~~~~~~  146 (420)
                      +|.- ...++-++|..-|+..|+.+.++++..+..-+|..+-..+.+++    +       -..  ............+.
T Consensus       148 IGgE-SlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~sl  226 (459)
T KOG4686|consen  148 IGGE-SLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSL  226 (459)
T ss_pred             cCch-hhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence            9999 77777999999999999999999999888888876544443333    1       000  00000000000000


Q ss_pred             ceeeecC-cHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhh
Q psy6665         147 VWLLNKG-RANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYI  225 (420)
Q Consensus       147 ~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (420)
                      .-..... ..+.++..+++   ++            ....+    ..+..+..++.+.++     ......+........
T Consensus       227 ical~lg~~D~rAerilh~---e~------------g~~Ge----~pkLtdv~~f~ppfw-----~~~iicv~yyva~fP  282 (459)
T KOG4686|consen  227 ICALSLGLSDDRAERILHL---EE------------GFLGE----EPKLTDVNTFYPPFW-----VLVIICVLYYVAWFP  282 (459)
T ss_pred             HHHHHhhhhhhHHHHHHhh---hc------------CcccC----CcccccccccCccHH-----HHHHHHHHHHHHHHH
Confidence            0000000 01111111100   00            00000    011111111122222     222222222223556


Q ss_pred             HHHhHHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHHH
Q psy6665         226 TIFYAVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILFY  292 (420)
Q Consensus       226 ~~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~~  292 (420)
                      +....|.++++. |+ +..++.+.+.......+.+++.|.++||+|++...+.+..+           +.+.+...+.+.
T Consensus       283 Fi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~lsPy~~m~~l  362 (459)
T KOG4686|consen  283 FITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFLSPYTSMTFL  362 (459)
T ss_pred             HhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhccHHHHHHHH
Confidence            777888998887 88 77777788888888999999999999999999777666554           233333344444


Q ss_pred             HHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcch
Q psy6665         293 VAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSA  350 (420)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~  350 (420)
                      ...+++- ....|..++.+.|+++.|+++|.++.+.++|-++.|.+.|.+.|+-|++.
T Consensus       363 GLsysll-AcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~  419 (459)
T KOG4686|consen  363 GLSYSLL-ACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYD  419 (459)
T ss_pred             hhhHHHH-HHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchh
Confidence            3333322 23356788889999999999999999999999999999999999888543

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.74  E-value=4e-16  Score=141.76  Aligned_cols=310  Identities=15%  Similarity=0.168  Sum_probs=194.0

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHHh----hcc-hhHHHHhhHHHHHHHHHHHHhHHHHHhhccccccchhHHHH
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLRT----YGR-RSLTMFSGLGMAVCMTTSGYYTQLIMTGQIEKSLIPVFCIL   75 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr----~Gr-r~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   75 (420)
                      |.+.......+.+.=+--++.-|+ |.++||    +|| ||.++.+.+..++.+.++..+..    .-....+......|
T Consensus        44 Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~----~~~~~k~~ya~vtY  119 (467)
T COG2211          44 GLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPD----FSMTGKLIYALVTY  119 (467)
T ss_pred             CCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCC----cccCcchHHHHHHH
Confidence            455555566666666666777788 999994    887 55666677777777766654300    00113444555577


Q ss_pred             HHHHHHhhcccchhhhhhhhhccC-ccchhhhHhHHHHHHHHHHHHHHHHhhhh-----------hhHHHHHhHhhhccc
Q psy6665          76 FYVAISVIAMGPSPAIVYITEVAR-PDLRGALICIGPSITSLGMVIVYALGAVL-----------HWRTVAWLSLAYILI  143 (420)
Q Consensus        76 ~l~G~~~~~~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~lG~~~~~~~~~~~-----------~wr~~f~~~~~~~~~  143 (420)
                      .+.+++.. ....+-.++.+|+.+ ++||.+..++-+.+.++|.++...+...+           ||+....+.++++++
T Consensus       120 ~l~~l~YT-~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i  198 (467)
T COG2211         120 MLLGLGYT-LVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVI  198 (467)
T ss_pred             HHHHHHHH-heeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHH
Confidence            99999999 777779999999987 58899999999999999977666555433           688777777777665


Q ss_pred             c-ccceeeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHH----HHHhhccccchHHHHHHHHHHHH
Q psy6665         144 P-SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARL----IKMVTMATGIKPLLVITVLFALQ  218 (420)
Q Consensus       144 ~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  218 (420)
                      . ...+...|+|..++                         ...+++.+.+++    ..++ ++.++.... ..    ++
T Consensus       199 ~~l~~~~~v~ER~~~~-------------------------~~~~~~~~~~~~~~~~~~~~-Nrp~~~~l~-~~----l~  247 (467)
T COG2211         199 LLLFCFFNVKERVVET-------------------------QPTKTGVKLKLKDSFLLIFK-NRPLLLLLL-MN----LL  247 (467)
T ss_pred             HHHHHHHHhhcccCcc-------------------------ccCcccccccHHHHHHHHHc-cchHHHHHH-HH----HH
Confidence            4 11222222222111                         000111122233    3333 333332222 11    12


Q ss_pred             HhcchhhHHHhHHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc------------hhHH
Q psy6665         219 QLAGIYITIFYAVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE------------KSLI  284 (420)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~------------~~~~  284 (420)
                      ...+..........|.+.. |. ...............+++.++..++.+|+|+|++...+.++            .+..
T Consensus       248 ~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~  327 (467)
T COG2211         248 LFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSV  327 (467)
T ss_pred             HHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcch
Confidence            2222333333444444432 44 44555666666777777799999999999999999888776            1222


Q ss_pred             HHHHHH-HHHHHHhhchhhHHHHHhcccCC-------hhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcC
Q psy6665         285 PVFCIL-FYVAISVIGMLSIPWTMTAEIFP-------LEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVG  347 (420)
Q Consensus       285 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g  347 (420)
                      .+.+.. ...........++.|++++|..+       .+..|...|...++..+|.+++..+.|++.+..|
T Consensus       328 ~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~G  398 (467)
T COG2211         328 VLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIG  398 (467)
T ss_pred             HHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            222222 22222233346788899998853       3445888999999999999999999999998877

>TIGR01272 gluP glucose/galactose transporter

Probab=99.74  E-value=3.1e-16  Score=139.78  Aligned_cols=250  Identities=13%  Similarity=0.117  Sum_probs=165.3

Q ss_pred             HHHHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh--------------------hhHHHH
Q psy6665          75 LFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL--------------------HWRTVA  134 (420)
Q Consensus        75 ~~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~--------------------~wr~~f  134 (420)
                      +++.|.|.+ ...+..+.++++..|+|++.+.+++.+..+++|..++|.++..+                    +|+++|
T Consensus        17 ~f~~g~G~~-~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~y   95 (310)
T TIGR01272        17 LFVLASGLT-ILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPY   95 (310)
T ss_pred             HHHHHhhHH-HHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHH
Confidence            399999999 99999999999999999999999999999999999999988742                    589999


Q ss_pred             HhHhhhccccccceeeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHH
Q psy6665         135 WLSLAYILIPSPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVL  214 (420)
Q Consensus       135 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (420)
                      ++.+.+.++....+...+.+..+.         ++  .         ++..+++  ..+.++.++      ++..+...+
T Consensus        96 l~ia~~~~~~~i~~~~~~~p~~~~---------~~--~---------~~~~~~~--~~~~~~~~~------~~~~~l~~~  147 (310)
T TIGR01272        96 LLLAGALAVLAIIFAFLPLPELQE---------AD--V---------ARVSSGD--TTQKTSAFQ------FTHLVLGAL  147 (310)
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCc---------cc--c---------ccccccc--ccchhhHHh------hHHHHHHHH
Confidence            866555443311111111100000         00  0         0000000  000011111      222333334


Q ss_pred             HHHHHhcchhhHHHhHHHHHHhh---CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc----------
Q psy6665         215 FALQQLAGIYITIFYAVQFLEDM---GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE----------  280 (420)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~---g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~----------  280 (420)
                      ..+...........|.+.|+.+.   |+ +.+.+........+.++|+++.+++.||+++|+.+..+..+          
T Consensus       148 ~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~  227 (310)
T TIGR01272       148 GIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAAL  227 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            44444445667888999999753   67 77788888999999999999999999999998887666544          


Q ss_pred             -hhHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHH
Q psy6665         281 -KSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFA  357 (420)
Q Consensus       281 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~  357 (420)
                       ....... .....+++.....|...+...+.+|++ .+++.++. ....+|+.+.|.+.|.+.|..| ....+++..
T Consensus       228 ~~~~~~~~-~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g-~~~a~~v~~  301 (310)
T TIGR01272       228 THGYVAMW-FVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLG-IQLAFALPV  301 (310)
T ss_pred             cCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhcc-chHHHHHHH
Confidence             1111122 222233333345677777888877754 45666765 5678999999999999999988 777766433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00788 fbt folate/biopterin transporter

Probab=99.74  E-value=9.6e-17  Score=151.33  Aligned_cols=319  Identities=13%  Similarity=0.048  Sum_probs=185.6

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHHHHHHHhhc-----chhHHHHhhHHHH-HHHHHHHHh---HHHHHhhccccccchh
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLTSQLLRTYG-----RRSLTMFSGLGMA-VCMTTSGYY---TQLIMTGQIEKSLIPV   71 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~g~l~dr~G-----rr~~l~~~~~~~~-~~~~~~~~~---~~~~~~~r~~~~~~~~   71 (420)
                      +|.|.++.....+...+...+-.+.|+++||++     ||+.++++.++.+ ++....+..   .....+..        
T Consensus        56 lg~s~~~i~~~~sl~~lpw~~K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~--------  127 (468)
T TIGR00788        56 LGLDGARYQRLVGLSSLGWALKPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFI--------  127 (468)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHH--------
Confidence            366777777777888888887655599999998     7888888776653 332222221   22223355        


Q ss_pred             HHHHHHHHHHhhcccchhhhhhhhhccCccchhhhHhHHH---HHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccc
Q psy6665          72 FCILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGP---SITSLGMVIVYALGAVL----HWRTVAWLSLAYILIP  144 (420)
Q Consensus        72 ~~~~~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~---~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~  144 (420)
                          ++.+++.+ ...++...+..|..+ |++....+...   ...++|.++++.+++.+    +||..|++.+.+.++.
T Consensus       128 ----~l~~~~~a-~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~  201 (468)
T TIGR00788       128 ----FLAALAKA-LYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQ  201 (468)
T ss_pred             ----HHHHHHHH-HHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence                88999999 888889999999998 55544433333   33346777777776654    8999998887776665


Q ss_pred             ccceeeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHh--hccccchHHHHHHHHHHHHHhcc
Q psy6665         145 SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMV--TMATGIKPLLVITVLFALQQLAG  222 (420)
Q Consensus       145 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  222 (420)
                      ...++..++++++...   +.++.+.....    .  .........++..++.++  .++..++.....++.+.  ... 
T Consensus       202 ~~~~~~~~E~~~~~~~---~~~~~~~~~~~----~--~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~--~~~-  269 (468)
T TIGR00788       202 LFVSNLSKERRAFVRP---RIGTYLEMNMA----L--LTLGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYA--NLP-  269 (468)
T ss_pred             HHHHHhcccccccccc---cccccchhhhh----h--hhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHh--hcC-
Confidence            1112222222100000   00000000000    0  000000001111222222  02222221111111011  111 


Q ss_pred             hhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccch------------hH------
Q psy6665         223 IYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIEK------------SL------  283 (420)
Q Consensus       223 ~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~------------~~------  283 (420)
                      ......+. ......|+ +...+......+++.+++..+.+.+.+|++.|+.+.++.++.            .+      
T Consensus       270 ~~~~~~f~-~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi  348 (468)
T TIGR00788       270 GASGSVFC-ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGI  348 (468)
T ss_pred             CCCceeEE-EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCC
Confidence            11111111 11123477 888898988899999999999999999999999888776650            00      


Q ss_pred             ----HHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcC
Q psy6665         284 ----IPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVG  347 (420)
Q Consensus       284 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g  347 (420)
                          .......+..........+. ..++.+..|++.+|+.+++.+.+.++|..+++.+.+.+.++.|
T Consensus       349 ~~~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       349 SDEVFVLGDSIIAEVLAQLKFMPF-LVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             CCeeeeeehhHHHHHHHHHHHccH-HHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence                01111122223333344444 5888999999999999999999999999999999999998877

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.56  E-value=1.6e-11  Score=108.90  Aligned_cols=311  Identities=13%  Similarity=0.059  Sum_probs=181.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhc-----chhHHHH-hhHHHHHHHHHHHHhHHHHHh-hc----ccc-ccchhHH
Q psy6665           6 NVYLATVLVGVVRMVFGLLTSQLLRTYG-----RRSLTMF-SGLGMAVCMTTSGYYTQLIMT-GQ----IEK-SLIPVFC   73 (420)
Q Consensus         6 ~~~~~~~~~~~~g~~~~~~~g~l~dr~G-----rr~~l~~-~~~~~~~~~~~~~~~~~~~~~-~r----~~~-~~~~~~~   73 (420)
                      ......+++..+-...-..+|+.+|+.+     ||..+++ |.++...+..+..++.+.+-- ..    ..+ +......
T Consensus        15 ~lv~~lval~~~~ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l   94 (403)
T PF03209_consen   15 WLVALLVALHYLVAPLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAAL   94 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHH
Confidence            3344555555555554333399999999     8876666 666666666655555221111 00    112 2234445


Q ss_pred             HHHHHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh-----hhHHHHHhHh--hhcccc--
Q psy6665          74 ILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL-----HWRTVAWLSL--AYILIP--  144 (420)
Q Consensus        74 ~~~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~-----~wr~~f~~~~--~~~~~~--  144 (420)
                      .|.+.|+|.+ .......++++|..|+|+|+++.++.....-+|.+++..+.+.+     .-|..-.+..  ++.++.  
T Consensus        95 ~F~l~G~G~~-~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~~~l~~  173 (403)
T PF03209_consen   95 AFLLYGLGVH-ASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIALLLNL  173 (403)
T ss_pred             HHHHHHhhHh-HhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHH
Confidence            7999999999 77777999999999999999999999999999999998887765     2222222211  111111  


Q ss_pred             ccceeeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchh
Q psy6665         145 SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIY  224 (420)
Q Consensus       145 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (420)
                      ...|-..+++.+..               .       ...+++++-+..+++++. ++.-++ .+...++...    +++
T Consensus       174 ia~wg~E~r~~~~~---------------~-------~~~~~~~~f~~a~~~~~~-~~~a~~-f~~fl~l~t~----a~~  225 (403)
T PF03209_consen  174 IALWGQEPRRSRRA---------------A-------AAERPRPPFREAWRQVWA-SPQARR-FFVFLFLGTL----AFF  225 (403)
T ss_pred             HHHHhcccCCcccc---------------c-------CCCCCCccHHHHHHHHHh-CCChhH-HHHHHHHHHH----HHH
Confidence            00111111100000               0       011111112334444443 333333 2222222221    122


Q ss_pred             hHHHhHHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhh-ccCchhhHhhhccc-------------hhHHHHHH
Q psy6665         225 ITIFYAVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLR-TYGRRSLTMFSQIE-------------KSLIPVFC  288 (420)
Q Consensus       225 ~~~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~g~~~~~~~~~~~-------------~~~~~~~~  288 (420)
                      ..-..+-+|-.+. |+ ..+........+.+.++|..+.+++.. |.++++....+...             ......+-
T Consensus       226 ~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~  305 (403)
T PF03209_consen  226 MQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFR  305 (403)
T ss_pred             hhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Confidence            2333334444444 77 778888888899999999999998766 67777766555444             11122222


Q ss_pred             HHHHHHHHhhchhh-HHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHh
Q psy6665         289 ILFYVAISVIGMLS-IPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDS  345 (420)
Q Consensus       289 ~~~~~~~~~~~~~~-~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~  345 (420)
                      ...+..+++.|... ...+..-++.+++..|..+|.....+.+...++..+.|.+.|.
T Consensus       306 ~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~  363 (403)
T PF03209_consen  306 PGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDL  363 (403)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22333333444432 2335666788888899999999999999999999999988774

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2563|consensus

Probab=99.54  E-value=1.4e-13  Score=122.13  Aligned_cols=326  Identities=14%  Similarity=0.065  Sum_probs=201.5

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--------HH--HHHhhccccccchhHHHHHHH
Q psy6665          10 ATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--------TQ--LIMTGQIEKSLIPVFCILFYV   78 (420)
Q Consensus        10 ~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--------~~--~~~~~r~~~~~~~~~~~~~l~   78 (420)
                      +..-+|++.+..-.++ -|+.||+|-|...+++..+.+++..+-..+        ++  ....+.            .+.
T Consensus        83 wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq------------~ia  150 (480)
T KOG2563|consen   83 WLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQ------------SIA  150 (480)
T ss_pred             HHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhH------------HHH
Confidence            4444566666666677 999999999999999999999999988776        22  445677            777


Q ss_pred             HHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----------hhHH--HHHhHhhhcccccc
Q psy6665          79 AISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----------HWRT--VAWLSLAYILIPSP  146 (420)
Q Consensus        79 G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----------~wr~--~f~~~~~~~~~~~~  146 (420)
                      +..+. ...........-|+|++||..+..+-..+..+|..++.++...+          .|-.  .|+...++..+..+
T Consensus       151 a~Aq~-Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~  229 (480)
T KOG2563|consen  151 AAAQP-FILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLA  229 (480)
T ss_pred             HHhhh-HhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence            77777 66664566777899999999999999999889888888877766          4654  34434433333211


Q ss_pred             ceee-ecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhh
Q psy6665         147 VWLL-NKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYI  225 (420)
Q Consensus       147 ~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (420)
                      ..+. .+++++              ..++..     .....+.+-..+.++.++ ++     .+....+........++.
T Consensus       230 l~~~~~~~~P~--------------tPps~s-----~~~~~~~~f~~si~~~~~-n~-----~F~il~~~ygi~~g~F~~  284 (480)
T KOG2563|consen  230 LVLFVFTKKPP--------------TPPSAS-----QAALQDASFPKSIKSCFK-NR-----QFIILAICYGIGLGLFNS  284 (480)
T ss_pred             HHHHhcCCCCC--------------CCCchh-----HhhhhcCcHHHHHHHHHc-Cc-----cHHHHHHHHhhhHHHHHH
Confidence            1111 111110              000000     000001111223333333 21     222222333333333555


Q ss_pred             HHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhh-Hhhhccc---------------hhHHHHHH
Q psy6665         226 TIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSL-TMFSQIE---------------KSLIPVFC  288 (420)
Q Consensus       226 ~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~-~~~~~~~---------------~~~~~~~~  288 (420)
                      ..+.+...+...|+ ...++.......+.+++++++.|.+.||.++-+. ..+....               ...+.+..
T Consensus       285 l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~  364 (480)
T KOG2563|consen  285 LSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFT  364 (480)
T ss_pred             HHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhh
Confidence            55555544444477 6788889999999999999999999999976443 2222211               11122333


Q ss_pred             HHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCc---chHHHHHHHHHHHHHHH
Q psy6665         289 ILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGG---SAMVQWFFALISVISIV  365 (420)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~---~~~~~~~~~~~~~~~~~  365 (420)
                      .+...+.+..+..|+..-+..|..-|..-++..|+.+..+++-+.+-..+.+...+..+.   +...-+.....+++..+
T Consensus       365 t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~  444 (480)
T KOG2563|consen  365 TCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAI  444 (480)
T ss_pred             hHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHH
Confidence            344455556666777777778875556678899999999999999998888888776551   22223444555555555


Q ss_pred             Hhhhcccc
Q psy6665         366 YVYIFLPE  373 (420)
Q Consensus       366 ~~~~~~~~  373 (420)
                      +..++.|+
T Consensus       445 lva~~r~~  452 (480)
T KOG2563|consen  445 LVAFFRPD  452 (480)
T ss_pred             HHhhhhhh
Confidence            55444443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.53  E-value=1.7e-12  Score=117.37  Aligned_cols=353  Identities=11%  Similarity=0.020  Sum_probs=206.9

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHHh-hcchhHHHHhhHHHHHHHHHHHHh----HHHHHhhccccccchhHHHH
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLRT-YGRRSLTMFSGLGMAVCMTTSGYY----TQLIMTGQIEKSLIPVFCIL   75 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~   75 (420)
                      |.|.+.....++.+..-.-+..++ |+++|| +|+|+++.+|.+++.+|.++.+..    ...++++-            
T Consensus        57 g~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L------------  124 (498)
T COG3104          57 GFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGL------------  124 (498)
T ss_pred             CcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHH------------
Confidence            455555555565554444455666 999999 899999999999999999888765    55667777            


Q ss_pred             HHHHHHhhcccchhhhhhhhhccCccc--hhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccc-----
Q psy6665          76 FYVAISVIAMGPSPAIVYITEVARPDL--RGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIP-----  144 (420)
Q Consensus        76 ~l~G~~~~~~~~~~~~~~i~e~~~~~~--r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~-----  144 (420)
                      .+.++|.| ..-+...+++.|.+|+++  |-..+++..++.++|.+++|.+.+++    ||...|...++-..+.     
T Consensus       125 ~~I~iG~G-l~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~  203 (498)
T COG3104         125 ALIIVGTG-LFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFL  203 (498)
T ss_pred             HHHHhccc-cccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Confidence            88889999 888879999999998643  77788889999999999999998887    8999998887766555     


Q ss_pred             -ccceeeecCcHHH--------HHHHHHHHhcchhhh----hhhHHHHhhhccchhhh---hhhhHHHHHhhcc--ccch
Q psy6665         145 -SPVWLLNKGRANQ--------ALKSLKYLARNYKEV----KNKEQELKKMNSTKENQ---SLSARLIKMVTMA--TGIK  206 (420)
Q Consensus       145 -~~~~l~~~~~~~~--------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~  206 (420)
                       .++++......++        .......+-......    ....+..  ........   ...-..+.++.++  ..|+
T Consensus       204 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~er~  281 (498)
T COG3104         204 LGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTF--SGVLLVISILIAIIYFAEAFRSPKVFDERR  281 (498)
T ss_pred             HccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhccCccHHHHH
Confidence             2222211110000        000000000000000    0000000  00000000   0000000111000  1122


Q ss_pred             HH------HHHHHHHHHHHhcchhhHHHhHHHHHHhh--CCcchHHHHHHHHHHHHHHHHHHHHHhhhccCch--hh---
Q psy6665         207 PL------LVITVLFALQQLAGIYITIFYAVQFLEDM--GSRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRR--SL---  273 (420)
Q Consensus       207 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~---  273 (420)
                      +.      ++...+++..+--....+..|.....+..  |+.-...+..++..+.-++.+++..++..|.+++  ..   
T Consensus       282 r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~  361 (498)
T COG3104         282 RLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTP  361 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcc
Confidence            22      22222222222223344555555544332  3455667788888888888888888877774433  11   


Q ss_pred             --Hhhhccc---------------------hhHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHH
Q psy6665         274 --TMFSQIE---------------------KSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHI  330 (420)
Q Consensus       274 --~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~  330 (420)
                        +.++..+                     .+...++...++....-....|+..+++..+.|+...+..+++.......
T Consensus       362 ~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~  441 (498)
T COG3104         362 IKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAA  441 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence              1111111                     22334444455555556667888889999999999999999999888888


Q ss_pred             HHHHHHHHhHH------HHHhcCcchHHHHHHHHHHHHHHHHhhhc
Q psy6665         331 LMFFALQYYPW------FKDSVGGSAMVQWFFALISVISIVYVYIF  370 (420)
Q Consensus       331 ~~~~~~~~~g~------l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  370 (420)
                      ++.++..+.+.      ..+... ....|+..+.+.++........
T Consensus       442 ~~~l~g~va~~~~~~~~~~~~~~-~~~~F~~~g~v~i~~~~~~~~~  486 (498)
T COG3104         442 GQTLGGQVAGLTAVTDPAYTAFI-EGRVFGTIGVVAIVIGILLLLL  486 (498)
T ss_pred             HHHhhceecccccccchhhhhhh-hhhhHHHHHHHHHHHHHHHHHh
Confidence            88888777662      233333 4566666666666666555433

>TIGR00895 2A0115 benzoate transport

Probab=99.51  E-value=2.3e-13  Score=126.71  Aligned_cols=153  Identities=17%  Similarity=0.227  Sum_probs=116.6

Q ss_pred             chhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHH
Q psy6665         222 GIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCI  289 (420)
Q Consensus       222 ~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~  289 (420)
                      .......+.|.+.++.|. ..+.+.......++.+++.++.|+++||+|||+.+..+..+           .+...+...
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (398)
T TIGR00895        32 DLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLIL  111 (398)
T ss_pred             HHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence            345566677888777788 67788888888899999999999999999999988777655           222222222


Q ss_pred             HHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhh
Q psy6665         290 LFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYI  369 (420)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  369 (420)
                      .++.+.......+...++..|.+|++.|+++.++.+....+|..++|.+.+.+.+..| ++..+.+.+++.++..++...
T Consensus       112 ~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~  190 (398)
T TIGR00895       112 RFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG-WRSLFYVGGIAPLLLLLLLMR  190 (398)
T ss_pred             HHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhccc-ceeehhhhhhHHHHHHHHHHH
Confidence            2232222233456677999999999999999999999999999999999999999888 888888776666666666666


Q ss_pred             ccccCC
Q psy6665         370 FLPETH  375 (420)
Q Consensus       370 ~~~~~~  375 (420)
                      +.||+.
T Consensus       191 ~~~~~~  196 (398)
T TIGR00895       191 FLPESI  196 (398)
T ss_pred             hCCCCC
Confidence            677654

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.49  E-value=2.1e-12  Score=120.58  Aligned_cols=170  Identities=16%  Similarity=0.168  Sum_probs=128.8

Q ss_pred             hHHHHHHHHHHHHHhcchhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc----
Q psy6665         206 KPLLVITVLFALQQLAGIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE----  280 (420)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~----  280 (420)
                      +.......+.++.+........+..|.+.++.|. ..+.+...+...++..++.+..|++.||+|||+.+..+.++    
T Consensus         7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~   86 (412)
T TIGR02332         7 RRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIA   86 (412)
T ss_pred             hHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHH
Confidence            4444555555555555566666777776677788 88888999999999999999999999999999998877666    


Q ss_pred             -------hhHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHh------cC
Q psy6665         281 -------KSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDS------VG  347 (420)
Q Consensus       281 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~------~g  347 (420)
                             ++...+....++.+....+..+....++.|.+|+++|+++.++.+....+|..+++.+.+++.+.      .|
T Consensus        87 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g  166 (412)
T TIGR02332        87 STATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKG  166 (412)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccc
Confidence                   23333334344444444445566668889999999999999999999999999999999988752      46


Q ss_pred             cchHHHHHHHHHHHHHHHHhhhccccCCC
Q psy6665         348 GSAMVQWFFALISVISIVYVYIFLPETHG  376 (420)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (420)
                       ++..|.+.++..++..++.++++||+++
T Consensus       167 -wr~~f~~~~~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       167 -WQWLFLLEGFPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             -hhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence             8889988888877776666677777654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.48  E-value=2.7e-15  Score=142.15  Aligned_cols=341  Identities=14%  Similarity=0.085  Sum_probs=2.9

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh------H--HH-----------HH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY------T--QL-----------IM   60 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------~--~~-----------~~   60 (420)
                      |+.+-++.....+.+-++..+..++ .++.+|-.|-+.+-.|.++++++++++++-      +  ..           -.
T Consensus        33 F~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~  112 (539)
T PF03137_consen   33 FGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSN  112 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccc
Confidence            4556677788889999999999999 999999888899999999999999998875      1  00           00


Q ss_pred             hh--------c----------cc-cc-cchhH-HHHHHHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHH
Q psy6665          61 TG--------Q----------IE-KS-LIPVF-CILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMV  119 (420)
Q Consensus        61 ~~--------r----------~~-~~-~~~~~-~~~~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~  119 (420)
                      ..        +          .. .+ ...++ +-=++.|+|.. ...+...+|+-|..++++-+...|+..+...+|..
T Consensus       113 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~-pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa  191 (539)
T PF03137_consen  113 LCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGAT-PLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPA  191 (539)
T ss_dssp             ---------------------------------------SSS--------------------------------------
T ss_pred             cccccccccccCccccccccccccchHHHHHHHHHHHHHhcccc-CCccceeeeeccccccccCccchhhhhHHhhccHH
Confidence            11        0          00 11 12222 24688999999 78888999999999999999999999999999999


Q ss_pred             HHHHHhhhh--------------------------hhHHHHHhHhhhcccc-ccceeeecCcHHHHH-HHHHHHhcchhh
Q psy6665         120 IVYALGAVL--------------------------HWRTVAWLSLAYILIP-SPVWLLNKGRANQAL-KSLKYLARNYKE  171 (420)
Q Consensus       120 ~~~~~~~~~--------------------------~wr~~f~~~~~~~~~~-~~~~l~~~~~~~~~~-~~~~~~~~~~~~  171 (420)
                      +|.++++..                          .|-.-|++.+.+.++. .|.+.+.|+-+++.+ +..++....+.+
T Consensus       192 ~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~~~~~~~~~~~~~~~  271 (539)
T PF03137_consen  192 LGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGTSERQEEKESSERKEE  271 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccccchhhhhhcchh
Confidence            998887764                          1555666666666655 444444433322210 000000000000


Q ss_pred             hhhhHHHHhhhccchhhhhhhhHHHHHh-hccccchHHHHHHHHHHHHHhcchhhHHHhHHHHHHhh-CC-cchHHHHHH
Q psy6665         172 VKNKEQELKKMNSTKENQSLSARLIKMV-TMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDM-GS-RMNVYLATV  248 (420)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~-~~~~~~~~~  248 (420)
                      ... .++.  ++.++.+......+++.+ .++..+.+.++...+...........+..|.|.|++.. +. +.++.....
T Consensus       272 ~~~-~~~~--~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G  348 (539)
T PF03137_consen  272 DSD-KDSF--KDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTG  348 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhh-hhcc--cccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHh
Confidence            000 0000  000000111233445544 44556677777777777777777888999999999886 66 555555554


Q ss_pred             HHH-HHHHHHHHHHHHhhhccCch--hhHhhhccc---------------------------------------------
Q psy6665         249 LVG-VVRMVFGLLTSQLLRTYGRR--SLTMFSQIE---------------------------------------------  280 (420)
Q Consensus       249 ~~~-~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~---------------------------------------------  280 (420)
                      ... .+.++|.+++|++.+|++-+  ..+.+..+.                                             
T Consensus       349 ~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn  428 (539)
T PF03137_consen  349 IVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCN  428 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCC
Confidence            433 36678899999999998543  222211111                                             


Q ss_pred             ----------------hh----HHHHHHHHHH-HHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHH-HHHHHHHH
Q psy6665         281 ----------------KS----LIPVFCILFY-VAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHI-LMFFALQY  338 (420)
Q Consensus       281 ----------------~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-~~~~~~~~  338 (420)
                                      ..    ....+...+. .........|. ....-..+|+++|+.+.|+...+.++ |.+-+|.+
T Consensus       429 ~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~-~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIi  507 (539)
T PF03137_consen  429 SCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPS-TLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPII  507 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccch-heeeeccCChhhcchhhhHHHHHHHhhcCcchHHH
Confidence                            00    1111111111 11112222333 24455778999999999999988776 55679999


Q ss_pred             hHHHHHhc
Q psy6665         339 YPWFKDSV  346 (420)
Q Consensus       339 ~g~l~~~~  346 (420)
                      +|.+.|..
T Consensus       508 fG~iiD~t  515 (539)
T PF03137_consen  508 FGAIIDST  515 (539)
T ss_dssp             --------
T ss_pred             HhHHHhhh
Confidence            99998863

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG2325|consensus

Probab=99.46  E-value=1.5e-12  Score=118.99  Aligned_cols=111  Identities=10%  Similarity=0.039  Sum_probs=98.0

Q ss_pred             ccchHHHHHHHHHHHHHHHHHH-HHHHHhhcc-hhHHHHhhHHHHHHHHHH-HHh------HHHHHhhccccccchhHHH
Q psy6665           4 RMNVYLATVLVGVVRMVFGLLT-SQLLRTYGR-RSLTMFSGLGMAVCMTTS-GYY------TQLIMTGQIEKSLIPVFCI   74 (420)
Q Consensus         4 ~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Gr-r~~l~~~~~~~~~~~~~~-~~~------~~~~~~~r~~~~~~~~~~~   74 (420)
                      +.+...++++...+|.+++++. |++..|.|. |+.++.|.++..++.++. +..      -+.++++|           
T Consensus        69 ~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R-----------  137 (488)
T KOG2325|consen   69 TATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVAR-----------  137 (488)
T ss_pred             CcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH-----------
Confidence            4555678889999999999999 999999997 888999999999999988 443      57789999           


Q ss_pred             HHHHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh
Q psy6665          75 LFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL  128 (420)
Q Consensus        75 ~~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~  128 (420)
                       ++.|+|.+ .... ..+|+++....++|.++++....+..+|.++||.+...+
T Consensus       138 -~l~Gvg~~-n~a~-lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f  188 (488)
T KOG2325|consen  138 -ILTGVGVG-NFAV-LRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAF  188 (488)
T ss_pred             -HHcCcCcc-cHHH-HHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHH
Confidence             99999998 7666 899999999999999999999999999999999887765

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.46  E-value=2.1e-12  Score=121.57  Aligned_cols=163  Identities=11%  Similarity=-0.057  Sum_probs=119.9

Q ss_pred             HHHHHHHHHhcchhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc---------
Q psy6665         211 ITVLFALQQLAGIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE---------  280 (420)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~---------  280 (420)
                      ..++..+..+........+.|.+.++.|+ ..+.+.......++..++.++.|++.||+|||+.+..+.++         
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~  106 (434)
T PRK11663         27 TMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFG  106 (434)
T ss_pred             HHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHH
Confidence            33333333333344567788898888888 77888888999999999999999999999999988777766         


Q ss_pred             --hhHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHH
Q psy6665         281 --KSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFAL  358 (420)
Q Consensus       281 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~  358 (420)
                        .+...+....+..+.......+...+++.|.+|+++|++++|+.+....+|..++|.+.+.+.+..| ++..+.+.++
T Consensus       107 ~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-w~~~f~~~~i  185 (434)
T PRK11663        107 FSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYG-WRYGMMIAGI  185 (434)
T ss_pred             HHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-HHHHHHHHHH
Confidence              2222222222222222222345666888999999999999999999999999999999999999888 8888888777


Q ss_pred             HHHHHHHHhhhccccC
Q psy6665         359 ISVISIVYVYIFLPET  374 (420)
Q Consensus       359 ~~~~~~~~~~~~~~~~  374 (420)
                      +.++..+...+.++|+
T Consensus       186 ~~~~~~~~~~~~~~~~  201 (434)
T PRK11663        186 IAIVVGLFLCWRLRDK  201 (434)
T ss_pred             HHHHHHHHHHHHcCCC
Confidence            7666555544555554

>KOG3626|consensus

Probab=99.44  E-value=1.3e-12  Score=124.18  Aligned_cols=256  Identities=14%  Similarity=0.060  Sum_probs=172.5

Q ss_pred             cchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--------HHHHH---------------
Q psy6665           5 MNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--------TQLIM---------------   60 (420)
Q Consensus         5 ~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--------~~~~~---------------   60 (420)
                      -+......+.+-+|..+...+ .+..-|.-|-+++-+|.++++++++++++-        +..-.               
T Consensus       131 Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~  210 (735)
T KOG3626|consen  131 SSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFC  210 (735)
T ss_pred             CCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchh
Confidence            333444456677788888888 999999999999999999999999999875        11111               


Q ss_pred             -------hhcc--------ccc----cchhHHHHHHHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHH
Q psy6665          61 -------TGQI--------EKS----LIPVFCILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIV  121 (420)
Q Consensus        61 -------~~r~--------~~~----~~~~~~~~~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~  121 (420)
                             ..|.        +.+    +..+++--++.|+|.. ...+...+|+-|...+++-+..+|+..+...+|.++|
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~T-pi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiG  289 (735)
T KOG3626|consen  211 CCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGAT-PIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIG  289 (735)
T ss_pred             hccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCC-CCccCCCccccccccccCCcHHHHHHHHHHHhhhHHH
Confidence                   0110        011    1222234688999999 7788899999999999999999999999999999999


Q ss_pred             HHHhhhh-----------------------hhHHHHHhHhhhcccc-ccceeeecCcHHHHHH-HHHHHhcchhhhhhhH
Q psy6665         122 YALGAVL-----------------------HWRTVAWLSLAYILIP-SPVWLLNKGRANQALK-SLKYLARNYKEVKNKE  176 (420)
Q Consensus       122 ~~~~~~~-----------------------~wr~~f~~~~~~~~~~-~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~  176 (420)
                      .+++.++                       .|..-|++.+.+.++. .|.+.+.++.+++.++ ...+.+..+.+.    
T Consensus       290 fllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~----  365 (735)
T KOG3626|consen  290 FLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQKRKRARDLHVLKTES----  365 (735)
T ss_pred             HHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCccccccchhhhhccccccc----
Confidence            9988876                       3777788887777766 5666665554433221 000000000000    


Q ss_pred             HHHhhhccchhhhhhhhHHHHHh-hccccchHHHHHHHHHHHHHhcchhhHHHhHHHHHHhh-CC-cchHHHHHHHHH-H
Q psy6665         177 QELKKMNSTKENQSLSARLIKMV-TMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDM-GS-RMNVYLATVLVG-V  252 (420)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~-~  252 (420)
                           +..+++.+.....+++.+ .++....++++...+........+..+..|+|.|++.. |. +..+..+..... -
T Consensus       366 -----~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp  440 (735)
T KOG3626|consen  366 -----GGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVP  440 (735)
T ss_pred             -----ccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhh
Confidence                 001111112233444444 34455567777777777788778899999999999886 77 666666664444 4


Q ss_pred             HHHHHHHHHHHhhhccCc
Q psy6665         253 VRMVFGLLTSQLLRTYGR  270 (420)
Q Consensus       253 ~~~~~~~~~g~l~d~~g~  270 (420)
                      +..+|.+++|++..|+.-
T Consensus       441 ~~~~Gi~lGG~iikkfkl  458 (735)
T KOG3626|consen  441 AAAVGIFLGGLIIKKFKL  458 (735)
T ss_pred             hhhhhhhccceeeeeecc
Confidence            456788899999999853

>PRK10054 putative transporter; Provisional

Probab=99.44  E-value=5.9e-12  Score=116.82  Aligned_cols=153  Identities=11%  Similarity=0.128  Sum_probs=113.2

Q ss_pred             hcchhhHHHhHHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHH
Q psy6665         220 LAGIYITIFYAVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPV  286 (420)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~  286 (420)
                      ..+.+....+.|.++++. |+ ..+.+.......+..+++.++.|+++||+|||+.+..+...           ++....
T Consensus        20 ~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (395)
T PRK10054         20 TIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLV   99 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            334666777888888654 88 78888889988999999999999999999999988766654           222222


Q ss_pred             HHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHH
Q psy6665         287 FCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVY  366 (420)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  366 (420)
                      ...............+...++..|..|++.|+++.|+.+...++|..++|.+.+.+.+ .| ++..+.+.+++.++..+.
T Consensus       100 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g-~~~~f~~~~~~~~i~~i~  177 (395)
T PRK10054        100 VLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QS-INLPFWLAAICSAFPLVF  177 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-cCcHHHHHHHHHHHHHHH
Confidence            2222222222223355566888999999999999999999999999999999998875 56 888888877777776555


Q ss_pred             hhhccccC
Q psy6665         367 VYIFLPET  374 (420)
Q Consensus       367 ~~~~~~~~  374 (420)
                      ..+..|+.
T Consensus       178 ~~~~~~~~  185 (395)
T PRK10054        178 IQIWVQRS  185 (395)
T ss_pred             HHHHHhcc
Confidence            55555544

>PRK03545 putative arabinose transporter; Provisional

Probab=99.44  E-value=8.3e-12  Score=115.93  Aligned_cols=149  Identities=13%  Similarity=0.067  Sum_probs=116.0

Q ss_pred             hHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHHH
Q psy6665         225 ITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILFY  292 (420)
Q Consensus       225 ~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~~  292 (420)
                      ......|.+.++.|. +.+.+.......++..++.+..|.+.||+|||+.+..+..+           ++...+....+.
T Consensus        27 ~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~  106 (390)
T PRK03545         27 VPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIG  106 (390)
T ss_pred             HHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            344456888788788 88888888888899999999999999999999998887665           233333333333


Q ss_pred             HHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhccc
Q psy6665         293 VAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFLP  372 (420)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  372 (420)
                      .+.......+...+++.|.+|+++|+++.|+......++..++|.+.+.+.+..| ++..+++.++++++..+..+...|
T Consensus       107 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~g-w~~~f~~~~~~~~l~~~~~~~~~~  185 (390)
T PRK03545        107 IAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLG-WRTTFLAIGGGALITLLLLIKLLP  185 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHhCC
Confidence            3333333456666888999999999999999999999999999999999999888 899999988888777666655566


Q ss_pred             cC
Q psy6665         373 ET  374 (420)
Q Consensus       373 ~~  374 (420)
                      +.
T Consensus       186 ~~  187 (390)
T PRK03545        186 LL  187 (390)
T ss_pred             CC
Confidence            54

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.44  E-value=3.7e-12  Score=118.14  Aligned_cols=154  Identities=16%  Similarity=0.159  Sum_probs=117.8

Q ss_pred             chhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHH
Q psy6665         222 GIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCI  289 (420)
Q Consensus       222 ~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~  289 (420)
                      +........|.+.++.|. +.+.+.......++..++.++.|++.||+|||+.+..+..+           ++.......
T Consensus        20 ~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (385)
T TIGR00710        20 GIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVL   99 (385)
T ss_pred             HHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence            344455566777777788 78888899999999999999999999999999988877655           222222222


Q ss_pred             HHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhh
Q psy6665         290 LFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYI  369 (420)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  369 (420)
                      .++.+.......+...+++.|.+|+++|+++.++.+....++..++|.+.+.+.+..+ ++..+.+.+++.++..+..+.
T Consensus       100 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~  178 (385)
T TIGR00710       100 RFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS-WHAIFAFLSLAGILLSALIFF  178 (385)
T ss_pred             HHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHH
Confidence            2222222223345666889999999999999999999999999999999999999888 888888888777777766666


Q ss_pred             ccccCCC
Q psy6665         370 FLPETHG  376 (420)
Q Consensus       370 ~~~~~~~  376 (420)
                      ..||+++
T Consensus       179 ~~~~~~~  185 (385)
T TIGR00710       179 ILPETLP  185 (385)
T ss_pred             hCCCCCC
Confidence            6666543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.43  E-value=1e-11  Score=110.89  Aligned_cols=165  Identities=14%  Similarity=0.116  Sum_probs=139.4

Q ss_pred             hHHHHHHHHHHHHHhcchhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc----
Q psy6665         206 KPLLVITVLFALQQLAGIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE----  280 (420)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~----  280 (420)
                      .+.+......+ ......+...-.+|++.+|.+. ...++...+.++++..++.++...+.||+.||++++..+.+    
T Consensus        13 ~~l~aLa~~~F-~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~   91 (394)
T COG2814          13 LALLALALAAF-AIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVS   91 (394)
T ss_pred             HHHHHHHHHHH-HHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence            33333333333 3333467788889999999999 88899999999999999999999999999999998887776    


Q ss_pred             -------hhHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHH
Q psy6665         281 -------KSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQ  353 (420)
Q Consensus       281 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~  353 (420)
                             .++..+...-+..+.....+.++..+...++.|+++|+++.++......+...++.++..++-|..| |+..|
T Consensus        92 n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G-WR~~F  170 (394)
T COG2814          92 NLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG-WRATF  170 (394)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh-HHHHH
Confidence                   4455555555566666666788888999999999999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHHHhhhccc
Q psy6665         354 WFFALISVISIVYVYIFLP  372 (420)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~  372 (420)
                      +..++++++..+..+..+|
T Consensus       171 ~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         171 LAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHHHHHHHHHHhCC
Confidence            9999999999999998998

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.43  E-value=2e-12  Score=120.27  Aligned_cols=152  Identities=13%  Similarity=0.074  Sum_probs=118.2

Q ss_pred             hhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHH
Q psy6665         224 YITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILF  291 (420)
Q Consensus       224 ~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~  291 (420)
                      .......|.+.++.|. +.+.+.......++..++.++.|+++||+|||+.+..+..+           .+...+....+
T Consensus        11 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (399)
T TIGR00893        11 ANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRV   90 (399)
T ss_pred             HhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            4455566776666688 78888999999999999999999999999999988776655           22333333333


Q ss_pred             HHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhcc
Q psy6665         292 YVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFL  371 (420)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  371 (420)
                      +.+.......+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..+ ++..+.+.+++.++..+..++..
T Consensus        91 l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  169 (399)
T TIGR00893        91 LLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFS-WQWAFIIEGVLGIIWGVLWLKFI  169 (399)
T ss_pred             HHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHhhhee
Confidence            33333334466677899999999999999999999999999999999999999888 88888888887777776666666


Q ss_pred             ccCCC
Q psy6665         372 PETHG  376 (420)
Q Consensus       372 ~~~~~  376 (420)
                      |++++
T Consensus       170 ~~~~~  174 (399)
T TIGR00893       170 PDPPQ  174 (399)
T ss_pred             cCCCC
Confidence            66543

>KOG2816|consensus

Probab=99.43  E-value=3.4e-12  Score=118.15  Aligned_cols=299  Identities=13%  Similarity=0.058  Sum_probs=179.8

Q ss_pred             HHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh-HHHHHhhccccccchhHHHHHHHHHHhhcccchhhhhh
Q psy6665          16 VVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY-TQLIMTGQIEKSLIPVFCILFYVAISVIAMGPSPAIVY   93 (420)
Q Consensus        16 ~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~   93 (420)
                      .+...+.++. |.++||+|||..+....+...+..+...+. +|.++ .-            -+.|...+ .... ..++
T Consensus        72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~~~~~~-~~------------~l~g~~~~-~~s~-~~a~  136 (463)
T KOG2816|consen   72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQGYWFFL-LL------------GLSGGFSA-IFSV-GFAY  136 (463)
T ss_pred             HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHhh-hc------------ccccchhh-hhhh-hhhh
Confidence            4455667777 999999999999999999999988888877 55444 22            34444444 4444 8999


Q ss_pred             hhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccc-ccceeeecCcHHHHHHHHHHHhcc
Q psy6665          94 ITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIP-SPVWLLNKGRANQALKSLKYLARN  168 (420)
Q Consensus        94 i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~  168 (420)
                      ++|....++|....++.......+..++|.+++.+    |.-..|++..+..++. .-.++..+++..|.++.....++.
T Consensus       137 vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~  216 (463)
T KOG2816|consen  137 VADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLREL  216 (463)
T ss_pred             eeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccccccccccc
Confidence            99999999999999999999999999999998887    6666677666665554 111222233222221100000000


Q ss_pred             hhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhHHHHHHhh-CC-cchHHHH
Q psy6665         169 YKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDM-GS-RMNVYLA  246 (420)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~-~~~~~~~  246 (420)
                      .            .................  +....+..+..+....+..........-..+.++... ++ ..+.+..
T Consensus       217 ~------------~~~~~~~~~~~~~~~~~--~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~  282 (463)
T KOG2816|consen  217 T------------PGSLDSSHVADAFQSLT--KVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDL  282 (463)
T ss_pred             C------------CCcccchhhhhhhhhhc--ccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHH
Confidence            0            00000000011111111  1111222222222222111100000010112222222 66 6666767


Q ss_pred             HHHHHHHHHHHHHHHH-HhhhccCchhhHhhhccc------------hhHHHHHHHHHHHHHHhhchhhHHHHHhcccCC
Q psy6665         247 TVLVGVVRMVFGLLTS-QLLRTYGRRSLTMFSQIE------------KSLIPVFCILFYVAISVIGMLSIPWTMTAEIFP  313 (420)
Q Consensus       247 ~~~~~~~~~~~~~~~g-~l~d~~g~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  313 (420)
                      .+..+..+.++.++.. .+...++.|+....++..            ..|..+  .......+.....|...+..+...+
T Consensus       283 ~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~--~~~v~~~~~~~~~pa~~s~~s~~v~  360 (463)
T KOG2816|consen  283 LSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMF--AAGVVVALAGIVFPAIRAFASILVS  360 (463)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhh--HHHHHHHhhcchhHHHHhHHHhhcc
Confidence            7778888888888777 677778888877766655            122222  2222233344456677788889999


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHh
Q psy6665         314 LEIRGIAQGLTFCLAHILMFFALQYYPWFKDS  345 (420)
Q Consensus       314 ~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~  345 (420)
                      ++.+|++.++...+..+.+.++|.+.+.+...
T Consensus       361 ~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~  392 (463)
T KOG2816|consen  361 PEEQGKVFGIISGIEGLSGVVSPALYGNIFAL  392 (463)
T ss_pred             cccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence            99999999999999999999999999887654

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.41  E-value=2.2e-11  Score=119.43  Aligned_cols=151  Identities=15%  Similarity=0.106  Sum_probs=109.2

Q ss_pred             hhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHH
Q psy6665         224 YITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILF  291 (420)
Q Consensus       224 ~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~  291 (420)
                      ..+....|.+..+.++ ..+.+++.+...++.+++.+++|+++||+|||+.++.+.++           .+...+++..+
T Consensus       184 ~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~  263 (742)
T TIGR01299       184 FVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRL  263 (742)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            3455566777677788 67778888889999999999999999999999998887655           22333333333


Q ss_pred             HHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcC------------cchHHHHHHHHH
Q psy6665         292 YVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVG------------GSAMVQWFFALI  359 (420)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g------------~~~~~~~~~~~~  359 (420)
                      +.+....+..+...+++.|.+|++.|+...++......+|.++++.+...+....|            +|+..+++.++ 
T Consensus       264 l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~l-  342 (742)
T TIGR01299       264 LSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAF-  342 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHH-
Confidence            44444444567888999999999999999999999999999999988777665443            13444444444 


Q ss_pred             HHHHHHHhhhccccCC
Q psy6665         360 SVISIVYVYIFLPETH  375 (420)
Q Consensus       360 ~~~~~~~~~~~~~~~~  375 (420)
                      ..+..++..+++||+.
T Consensus       343 p~ll~ll~~~~lPESP  358 (742)
T TIGR01299       343 PCVFAIGALTFMPESP  358 (742)
T ss_pred             HHHHHHHHHHHcCCCH
Confidence            3444444556788873

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.41  E-value=2e-11  Score=113.31  Aligned_cols=149  Identities=15%  Similarity=0.208  Sum_probs=116.1

Q ss_pred             hHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHHH
Q psy6665         225 ITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILFY  292 (420)
Q Consensus       225 ~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~~  292 (420)
                      ......|.+.++.|. +.+.+.......++..++.++.|.+.||+|||+.+..+..+           ++...++...+.
T Consensus        38 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l  117 (394)
T PRK10213         38 LPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRAC  117 (394)
T ss_pred             HHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence            444467777777788 77888888889999999999999999999999998877776           223333333334


Q ss_pred             HHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhccc
Q psy6665         293 VAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFLP  372 (420)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  372 (420)
                      .+.......+...+++.|.+|+++|+.+.++......++..++|.+.+.+.+..| ++..+++.++++++..+......|
T Consensus       118 ~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~g-w~~~f~~~~~l~~~~~l~~~~~~p  196 (394)
T PRK10213        118 LGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIG-WRNVFNAAAVMGVLCIFWIIKSLP  196 (394)
T ss_pred             HHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHHHHHHCC
Confidence            3444334566777888999999999999999999999999999999999999988 888888877766665555444456


Q ss_pred             cC
Q psy6665         373 ET  374 (420)
Q Consensus       373 ~~  374 (420)
                      |+
T Consensus       197 ~~  198 (394)
T PRK10213        197 SL  198 (394)
T ss_pred             CC
Confidence            54

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.41  E-value=9.5e-12  Score=115.65  Aligned_cols=167  Identities=12%  Similarity=0.093  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHHhcchhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-------
Q psy6665         209 LVITVLFALQQLAGIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-------  280 (420)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-------  280 (420)
                      +.+..........+........|.+.++.|. ..+.+.......++..++.++.|+++||+|||+.+..+...       
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~   84 (392)
T PRK10473          5 LLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLL   84 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHH
Confidence            3344444444444556666788888888888 66777888888899999999999999999999998877655       


Q ss_pred             ----hhHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHH
Q psy6665         281 ----KSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFF  356 (420)
Q Consensus       281 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~  356 (420)
                          .+........++.+.......+...+++.|.+|+++|+++.++.+....++..++|.+.+.+.+..| ++..+.+.
T Consensus        85 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g-~~~~~~~~  163 (392)
T PRK10473         85 CSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP-WQSLFYTM  163 (392)
T ss_pred             HHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC-hHHHHHHH
Confidence                2222222222222222222345667888999999999999999999999999999999988888888 88888888


Q ss_pred             HHHHHHHHHHhhhccccCCC
Q psy6665         357 ALISVISIVYVYIFLPETHG  376 (420)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~  376 (420)
                      +++.++..++.....||+++
T Consensus       164 ~~~~~i~~~~~~~~~~~~~~  183 (392)
T PRK10473        164 AAMGILVLLLSLFILKETRP  183 (392)
T ss_pred             HHHHHHHHHHHHHHcCCCCC
Confidence            88877777776666676543

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.39  E-value=2.3e-11  Score=113.61  Aligned_cols=167  Identities=17%  Similarity=0.167  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHHHHhcchhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----
Q psy6665         207 PLLVITVLFALQQLAGIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----  280 (420)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----  280 (420)
                      +.+....+..+.............|.+.++.|. ..+.+.......++..++.++.|.++||+|||+.+..+..+     
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~   91 (405)
T TIGR00891        12 NAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGT   91 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            333444444444444556666777877777788 78888899999999999999999999999999998877655     


Q ss_pred             ------hhHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcC-cchHHH
Q psy6665         281 ------KSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVG-GSAMVQ  353 (420)
Q Consensus       281 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g-~~~~~~  353 (420)
                            .++..+....++.+.......+...+++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..+ +++..+
T Consensus        92 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f  171 (405)
T TIGR00891        92 LACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALF  171 (405)
T ss_pred             HHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHH
Confidence                  2233333333333333333456667889999999999999999999999999999999998887654 255555


Q ss_pred             HHHHHHHHHHHHHhhhccccC
Q psy6665         354 WFFALISVISIVYVYIFLPET  374 (420)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~  374 (420)
                      .+.++..++ .++.....||+
T Consensus       172 ~~~~~~~~~-~~~~~~~~~~~  191 (405)
T TIGR00891       172 FISILPIIF-ALWLRKNIPEA  191 (405)
T ss_pred             HHHHHHHHH-HHHHHHhCCCC
Confidence            544333333 33333445554

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.39  E-value=1.2e-11  Score=115.62  Aligned_cols=159  Identities=15%  Similarity=0.107  Sum_probs=118.1

Q ss_pred             HHHHhcchhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhH
Q psy6665         216 ALQQLAGIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSL  283 (420)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~  283 (420)
                      .+.............|.+.++.|. +.+.+.......++..++.++.|+++||+|||+.+..+..+           .+.
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~  103 (406)
T PRK11551         24 ALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDF  103 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccH
Confidence            333333345566677888888788 78888999999999999999999999999999998877655           222


Q ss_pred             HHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHH
Q psy6665         284 IPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVIS  363 (420)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  363 (420)
                      ..+....++.+.......+...+++.|.+|+++|++++++.+....+|..+++.+.+.+.+..+ ++..+++.+++.++.
T Consensus       104 ~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  182 (406)
T PRK11551        104 PSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAA-WRHIFYVGGVGPLLL  182 (406)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC-HHHHHHHHHHHHHHH
Confidence            2233333333332223355667889999999999999999999999999999999888888777 778888777666666


Q ss_pred             HHHhhhccccCC
Q psy6665         364 IVYVYIFLPETH  375 (420)
Q Consensus       364 ~~~~~~~~~~~~  375 (420)
                      .+....+.||+.
T Consensus       183 ~~~~~~~l~~~~  194 (406)
T PRK11551        183 VPLLMRWLPESR  194 (406)
T ss_pred             HHHHHHhCCCCh
Confidence            655555667653

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.37  E-value=8.9e-12  Score=119.33  Aligned_cols=160  Identities=16%  Similarity=0.160  Sum_probs=124.7

Q ss_pred             HHHHHhcchhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hh
Q psy6665         215 FALQQLAGIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KS  282 (420)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~  282 (420)
                      ..+.............|.+.++.|. ..+.++......++..++.++.|+++||+|||+.+..+..+           .+
T Consensus        10 ~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~   89 (485)
T TIGR00711        10 GTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPN   89 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCC
Confidence            3333333455667778888888888 77888999999999999999999999999999998877665           23


Q ss_pred             HHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHH
Q psy6665         283 LIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVI  362 (420)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  362 (420)
                      ...+....+..+.......+...+++.|.+|+++|+++.++......++..++|.+.+++.++.| ++..+++.+.+.++
T Consensus        90 ~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-w~~~f~~~~~~~~~  168 (485)
T TIGR00711        90 LELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH-WRWIFLINVPIGII  168 (485)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC-ceehhhhhhHHHHH
Confidence            33333344444444444566777999999999999999999999999999999999999999888 88888887777777


Q ss_pred             HHHHhhhccccCC
Q psy6665         363 SIVYVYIFLPETH  375 (420)
Q Consensus       363 ~~~~~~~~~~~~~  375 (420)
                      ..++..+..|+++
T Consensus       169 ~~~~~~~~~~~~~  181 (485)
T TIGR00711       169 VVVVAFFILPRDK  181 (485)
T ss_pred             HHHHHHHHcCCcc
Confidence            7666666666543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.37  E-value=4.8e-12  Score=111.78  Aligned_cols=172  Identities=12%  Similarity=-0.015  Sum_probs=130.8

Q ss_pred             cchHHHHHHHHHHHHHhcchhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc--
Q psy6665         204 GIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE--  280 (420)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~--  280 (420)
                      .|.+.++..++.....+..=-.+..-.|.+.++.++ ..+.+.+.+...+..-++-.+.|.++||.+.|+.+..++++  
T Consensus        26 ~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsa  105 (448)
T COG2271          26 WRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSA  105 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHH
Confidence            344455555444444333345566777888888678 89999999999999999999999999999999888777776  


Q ss_pred             ---------hhHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHh--HHHHHhcCcc
Q psy6665         281 ---------KSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYY--PWFKDSVGGS  349 (420)
Q Consensus       281 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~--g~l~~~~g~~  349 (420)
                               ++...+..+..+.+.+...-.|.+...+..-+|+++||+..++.+...++|+.+.|.+.  +++.++.+ +
T Consensus       106 i~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~-w  184 (448)
T COG2271         106 IVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGG-W  184 (448)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccc-h
Confidence                     22222222223333332222456668888999999999999999999999999999999  88888877 9


Q ss_pred             hHHHHHHHHHHHHHHHHhhhccccCCC
Q psy6665         350 AMVQWFFALISVISIVYVYIFLPETHG  376 (420)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (420)
                      +..|++-++++++..++.++..+++.+
T Consensus       185 ~~~f~~pgiiaiival~~~~~~rd~Pq  211 (448)
T COG2271         185 RAAFYFPGIIAIIVALILLFLLRDRPQ  211 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            999999999999999888877776544

>PRK10504 putative transporter; Provisional

Probab=99.36  E-value=4.4e-11  Score=114.07  Aligned_cols=162  Identities=10%  Similarity=0.040  Sum_probs=121.4

Q ss_pred             HHHHHHHHhcchhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc----------
Q psy6665         212 TVLFALQQLAGIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE----------  280 (420)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~----------  280 (420)
                      .....+......+.+..+.|.+.++.|. +.+.+.......++..++.++.|+++||+|||+.+..+..+          
T Consensus        15 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~   94 (471)
T PRK10504         15 VAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCAL   94 (471)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444456677889999988888 66777777888888899999999999999999988766544          


Q ss_pred             -hhHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHH
Q psy6665         281 -KSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALI  359 (420)
Q Consensus       281 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~  359 (420)
                       .+...+.....+.+.......+...+++.|.+|+++|+++.|+.+....++..++|.+.+.+.++.| ++..|.+...+
T Consensus        95 ~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~g-w~~~f~~~~~~  173 (471)
T PRK10504         95 SGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYAS-WHWIFLINIPV  173 (471)
T ss_pred             hCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcc-HHHHHHHHHHH
Confidence             2222233333333333333456677888999999999999999999999999999999999999888 88888887777


Q ss_pred             HHHHHHHhhhccccC
Q psy6665         360 SVISIVYVYIFLPET  374 (420)
Q Consensus       360 ~~~~~~~~~~~~~~~  374 (420)
                      +.+..+......|+.
T Consensus       174 ~~l~~~~~~~~~~~~  188 (471)
T PRK10504        174 GIIGAIATLMLMPNY  188 (471)
T ss_pred             HHHHHHHHHHhCCCc
Confidence            776666665555543

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.35  E-value=5.1e-11  Score=114.01  Aligned_cols=165  Identities=13%  Similarity=0.042  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHhcchhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc--------
Q psy6665         210 VITVLFALQQLAGIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE--------  280 (420)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~--------  280 (420)
                      ....+..+........+..-.|.+.++.|. ..+..+....+.++...+.+..|+++||+|||+.+..+..+        
T Consensus         9 ~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~   88 (495)
T PRK14995          9 VIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAA   88 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            333444444444456677778999888887 67888888889999999999999999999999998887766        


Q ss_pred             ---hhHHHHHHHHHHHHHHhhchhhHHHHHhcccC-ChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHH
Q psy6665         281 ---KSLIPVFCILFYVAISVIGMLSIPWTMTAEIF-PLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFF  356 (420)
Q Consensus       281 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~  356 (420)
                         ++...++....+.+.......+.....+.+.+ |+++|+++.|+......+|..++|.+.+.+.++.| |++.|++.
T Consensus        89 ~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g-wr~~f~i~  167 (495)
T PRK14995         89 AFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY-WGSVFLIN  167 (495)
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-hHHHHHHH
Confidence               33333333333333333334455445555554 78999999999999999999999999999999988 99999888


Q ss_pred             HHHHHHHHHHhhhccccCC
Q psy6665         357 ALISVISIVYVYIFLPETH  375 (420)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~  375 (420)
                      ..++++..++..+++|+.+
T Consensus       168 ~~~~~~~~~l~~~~l~~~~  186 (495)
T PRK14995        168 VPIVLVVMGLTARYVPRQA  186 (495)
T ss_pred             HHHHHHHHHHHHHhCCCCC
Confidence            8777777777666777654

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.35  E-value=4.3e-11  Score=110.75  Aligned_cols=152  Identities=7%  Similarity=0.054  Sum_probs=117.1

Q ss_pred             hhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHH
Q psy6665         223 IYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCIL  290 (420)
Q Consensus       223 ~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~  290 (420)
                      ........|.+.++.|. ..+.+...+...++..++.++.|++.||+|||+.+..+..+           ++...+....
T Consensus        19 ~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r   98 (382)
T PRK10091         19 EFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGR   98 (382)
T ss_pred             HHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            34556677888888788 67788899999999999999999999999999998887766           2333333333


Q ss_pred             HHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhc
Q psy6665         291 FYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIF  370 (420)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  370 (420)
                      ++.+.......+.......|.+|+++|+.+.++......++..++|.+.+.+.+..| ++..+.+.+++.++..+..+..
T Consensus        99 ~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-wr~~f~~~~~~~~~~~~~~~~~  177 (382)
T PRK10091         99 LVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFS-WRYTFLLIAVFNIAVLASIYFW  177 (382)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhcc-HHHHHHHHHHHHHHHHHHHHHh
Confidence            333332223345555778899999999999999999999999999999999988888 8888988888777766665566


Q ss_pred             cccCC
Q psy6665         371 LPETH  375 (420)
Q Consensus       371 ~~~~~  375 (420)
                      .||.+
T Consensus       178 lp~~~  182 (382)
T PRK10091        178 VPDIR  182 (382)
T ss_pred             CCCCC
Confidence            77654

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.35  E-value=7.4e-12  Score=98.04  Aligned_cols=118  Identities=14%  Similarity=0.220  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHHHHHHhhcccchhh
Q psy6665          14 VGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFYVAISVIAMGPSPA   90 (420)
Q Consensus        14 ~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l~G~~~~~~~~~~~   90 (420)
                      .+.++..++.++ |++.||+|||+.+..+..+..++.+...+.  ++.+.+.+            ++.|++.+ ...+..
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~g~~~~-~~~~~~   72 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIAR------------FLQGFGAA-FALVAG   72 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHH------------HHHHHHHH-HHHHhH
Confidence            456778888899 999999999999999999999888887776  77788889            99999999 777778


Q ss_pred             hhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccc
Q psy6665          91 IVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIP  144 (420)
Q Consensus        91 ~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~  144 (420)
                      ..++.|.+|+++|++..++.+....+|..+++.+.+.+    +|++.+++.+...++.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (141)
T TIGR00880        73 AALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAA  130 (141)
T ss_pred             HHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999888876    7999888877665543

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.35  E-value=2.4e-11  Score=111.71  Aligned_cols=145  Identities=14%  Similarity=0.123  Sum_probs=111.4

Q ss_pred             hhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------h-----hHHH
Q psy6665         223 IYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------K-----SLIP  285 (420)
Q Consensus       223 ~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~-----~~~~  285 (420)
                      ........|.+..+.+. +.+.+.......++.+++.++.|+++||+|||+.+..+..+           .     +...
T Consensus        15 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (365)
T TIGR00900        15 TAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQ   94 (365)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHH
Confidence            44455666777777766 77888899999999999999999999999999998876554           2     3333


Q ss_pred             HHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHH
Q psy6665         286 VFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIV  365 (420)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  365 (420)
                      +.......+.......+...++..|.+|+++|++++++.+....+|..++|.+.+.+.+..| ++..+++.++..++..+
T Consensus        95 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-~~~~~~~~~~~~~~~~~  173 (365)
T TIGR00900        95 VYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLG-IKWAIWVDAVGFAISAL  173 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHH
Confidence            33333333333333456667899999999999999999999999999999999999999888 88888777666655554


Q ss_pred             Hhh
Q psy6665         366 YVY  368 (420)
Q Consensus       366 ~~~  368 (420)
                      ..+
T Consensus       174 ~~~  176 (365)
T TIGR00900       174 LIV  176 (365)
T ss_pred             HHH
Confidence            443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.34  E-value=9.2e-11  Score=109.69  Aligned_cols=151  Identities=13%  Similarity=0.124  Sum_probs=112.9

Q ss_pred             chhhHHHhHHHHHHhhCC-cch-----HHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHH
Q psy6665         222 GIYITIFYAVQFLEDMGS-RMN-----VYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLI  284 (420)
Q Consensus       222 ~~~~~~~~~~~~~~~~g~-~~~-----~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~  284 (420)
                      .......+.|.+.++.|. ..+     .+.......+...++.++.|+++||+|||+.+..+...           .++.
T Consensus        29 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~  108 (408)
T PRK09874         29 AFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIW  108 (408)
T ss_pred             HHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            345566788888888777 333     25677778889999999999999999999988876655           2222


Q ss_pred             HHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHH
Q psy6665         285 PVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISI  364 (420)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  364 (420)
                      .+....++.+. ..+..+....+..|.+|+++|+++.++.+....++..++|.+.+.+.+..+ ++..+++.+++.++..
T Consensus       109 ~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~  186 (408)
T PRK09874        109 QFLILRALLGL-LGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYG-LRPVFFITASVLFLCF  186 (408)
T ss_pred             HHHHHHHHHHH-hhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHH
Confidence            22222222222 234455556778889999999999999999999999999999999999888 8888888888777777


Q ss_pred             HHhhhccccC
Q psy6665         365 VYVYIFLPET  374 (420)
Q Consensus       365 ~~~~~~~~~~  374 (420)
                      +...++.|++
T Consensus       187 ~~~~~~~~~~  196 (408)
T PRK09874        187 LVTLFCIREN  196 (408)
T ss_pred             HHHHHHhccC
Confidence            6666666654

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.34  E-value=1.8e-11  Score=116.97  Aligned_cols=152  Identities=14%  Similarity=0.119  Sum_probs=102.7

Q ss_pred             CccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHH---Hh--HHHHHhhccccccchhHHHHH
Q psy6665           3 SRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSG---YY--TQLIMTGQIEKSLIPVFCILF   76 (420)
Q Consensus         3 ~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~--~~~~~~~r~~~~~~~~~~~~~   76 (420)
                      .+........+...++..++.+. |+++||+|||+++..+.++..++.+.+.   ..  ...+++++            +
T Consensus       283 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~  350 (490)
T PRK10642        283 YSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGL------------L  350 (490)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH------------H
Confidence            33344445566678888999999 9999999999998887765444333211   11  44556677            7


Q ss_pred             HHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh-----hhHHHHHhHhhhcccc-------
Q psy6665          77 YVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL-----HWRTVAWLSLAYILIP-------  144 (420)
Q Consensus        77 l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~-----~wr~~f~~~~~~~~~~-------  144 (420)
                      +.|++.+ ........++.|.+|++.|++++++......++..++|.+.+.+     +|+.++++..+++++.       
T Consensus       351 ~~g~~~~-~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~  429 (490)
T PRK10642        351 MLAVILN-CFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTM  429 (490)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence            8887766 44445677889999999999999974444445556666666554     4676655444433332       


Q ss_pred             --ccceeeec-----CcHHHHHHHHHHHhc
Q psy6665         145 --SPVWLLNK-----GRANQALKSLKYLAR  167 (420)
Q Consensus       145 --~~~~l~~~-----~~~~~~~~~~~~~~~  167 (420)
                        +|.|+..+     ++.+|+++.+.++++
T Consensus       430 pes~~~~~~~~~~~~~~~~~a~~~l~~~~~  459 (490)
T PRK10642        430 KETANRPLKGATPAASDIQEAKEILVEHYD  459 (490)
T ss_pred             ccccCCCCCCccccccchhhHHHHhhcccc
Confidence              77787754     777888887777763

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.33  E-value=4.7e-11  Score=109.29  Aligned_cols=151  Identities=14%  Similarity=0.014  Sum_probs=115.0

Q ss_pred             hhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHH
Q psy6665         224 YITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILF  291 (420)
Q Consensus       224 ~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~  291 (420)
                      ..+....|.+.++.|. +.+.+...+...++..++.+..|+++||+|||+.+..+...           .++..+...-+
T Consensus         8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~   87 (368)
T TIGR00903         8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQL   87 (368)
T ss_pred             HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            3456677888888788 77888888889999999999999999999999876554433           11112222222


Q ss_pred             HHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhcc
Q psy6665         292 YVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFL  371 (420)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  371 (420)
                      .. +.+.+.........+|.+|+++|++++++.+....+|..+++.+.+++.++.| |+..|.+.+++.++..++.++.+
T Consensus        88 l~-G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~g-Wr~~f~~~~~l~~~~~~~~~~~l  165 (368)
T TIGR00903        88 LA-ALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGG-LQLLIIPIAAVAAAGIILVLAAL  165 (368)
T ss_pred             HH-HhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHHHHHHHHHc
Confidence            22 22233333444666899999999999999999999999999999999999888 99999888888888877777778


Q ss_pred             ccCCC
Q psy6665         372 PETHG  376 (420)
Q Consensus       372 ~~~~~  376 (420)
                      ||+++
T Consensus       166 p~~p~  170 (368)
T TIGR00903       166 PALPF  170 (368)
T ss_pred             CCCCC
Confidence            87643

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.33  E-value=7.3e-11  Score=110.20  Aligned_cols=150  Identities=13%  Similarity=0.084  Sum_probs=112.5

Q ss_pred             HHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHHHH
Q psy6665         226 TIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILFYV  293 (420)
Q Consensus       226 ~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~  293 (420)
                      ...-+|.+.++.+. ........+.+.++..++.++.|+++||+|||+++..+..+           ++...++...++.
T Consensus        35 ~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~  114 (413)
T PRK15403         35 IQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQ  114 (413)
T ss_pred             hccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            33344555556677 66777788888899999999999999999999998877665           2333333333333


Q ss_pred             HHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhcccc
Q psy6665         294 AISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFLPE  373 (420)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (420)
                      +.......+...++..|.+|++.+++.+++.+....++..++|.+.+.+.++.| ++..|++.++..++..+..++..||
T Consensus       115 Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~g-w~~~f~~~~~~~~i~~~~~~~~lp~  193 (413)
T PRK15403        115 GTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH-WKVLFAIIAVMGLIAFVGLLLAMPE  193 (413)
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            332222344556788899999999999999999999999999999999888888 8899988888877777665566777


Q ss_pred             CCC
Q psy6665         374 THG  376 (420)
Q Consensus       374 ~~~  376 (420)
                      +++
T Consensus       194 ~~~  196 (413)
T PRK15403        194 TVK  196 (413)
T ss_pred             Ccc
Confidence            643

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.33  E-value=5.2e-11  Score=113.19  Aligned_cols=150  Identities=12%  Similarity=0.109  Sum_probs=104.9

Q ss_pred             chhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHH
Q psy6665         222 GIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCI  289 (420)
Q Consensus       222 ~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~  289 (420)
                      ..+....+.|.+.++.|+ ..+.+.......++..++.++.|+++||+|||+.+..+.+.           .+...+...
T Consensus        51 ~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~  130 (476)
T PLN00028         51 STFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAV  130 (476)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            344556667777777788 67777777888888999999999999999999988776655           222222222


Q ss_pred             HHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHH----h-----cCcchHHHHHHHHHH
Q psy6665         290 LFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKD----S-----VGGSAMVQWFFALIS  360 (420)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~----~-----~g~~~~~~~~~~~~~  360 (420)
                      .++.+....... ....++.|.+|++.|+.++|+.+...++|..+++.+.+.+..    .     .| |+..|.+.+++.
T Consensus       131 r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~g-Wr~~f~i~g~l~  208 (476)
T PLN00028        131 RFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTA-WRIAFFVPGLLH  208 (476)
T ss_pred             HHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhh-hHHHHHHHHHHH
Confidence            222222222222 334577899999999999999998888888888777765533    1     35 888888888888


Q ss_pred             HHHHHHhhhcccc
Q psy6665         361 VISIVYVYIFLPE  373 (420)
Q Consensus       361 ~~~~~~~~~~~~~  373 (420)
                      ++..+..+++.++
T Consensus       209 l~~~l~~~~~~~~  221 (476)
T PLN00028        209 IIMGILVLTLGQD  221 (476)
T ss_pred             HHHHHHHHHHcCc
Confidence            7776666544433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.33  E-value=1.8e-11  Score=111.89  Aligned_cols=151  Identities=18%  Similarity=0.188  Sum_probs=113.9

Q ss_pred             hhhHHHhHH-HHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHH
Q psy6665         223 IYITIFYAV-QFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCI  289 (420)
Q Consensus       223 ~~~~~~~~~-~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~  289 (420)
                      ........| .+.++.|. ..+.+.......++..++.++.|+++||+|||+.+..+..+           .+...+...
T Consensus        12 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (352)
T PF07690_consen   12 FSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIA   91 (352)
T ss_dssp             HHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhh
Confidence            344555666 45555587 78888999999999999999999999999999988777666           122223333


Q ss_pred             HHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhh
Q psy6665         290 LFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYI  369 (420)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  369 (420)
                      .++.+.......+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..+ ++..+++.+++.++..++...
T Consensus        92 ~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~-~~~~~~~~~~~~~~~~il~~~  170 (352)
T PF07690_consen   92 RFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFG-WRWAFLISAILSLIAAILFIL  170 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH-HCCHHHHHHHHHHHHHHHHHC
T ss_pred             ccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccc-cccccccccchhhhhhhhHhh
Confidence            3333333334567777999999999999999999999999999999999999988888 888899988888888775444


Q ss_pred             ccccC
Q psy6665         370 FLPET  374 (420)
Q Consensus       370 ~~~~~  374 (420)
                      +.+++
T Consensus       171 ~~~~~  175 (352)
T PF07690_consen  171 FLPEP  175 (352)
T ss_dssp             CC---
T ss_pred             hhhhc
Confidence            44443

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.32  E-value=2.2e-10  Score=106.91  Aligned_cols=325  Identities=14%  Similarity=0.108  Sum_probs=171.3

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHHHHHHHhh-----cchhHHHHhhHHHHHHHHHHHHhHHHHHhhccccccchhHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLTSQLLRTY-----GRRSLTMFSGLGMAVCMTTSGYYTQLIMTGQIEKSLIPVFCIL   75 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~g~l~dr~-----Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   75 (420)
                      +|.+.+++....+...+--.+-.+.|.++|-+     .||+-++++.++.+++.+..+..     .. ...+........
T Consensus        20 l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~-----~~-~~~s~~~~~~~l   93 (433)
T PF03092_consen   20 LGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALL-----PA-SESSAAIAVVLL   93 (433)
T ss_pred             cCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhc-----cc-ccchhhhHHHHH
Confidence            35666777777777777666665559999975     35666666766665555544432     00 001111112233


Q ss_pred             HHHHHHhhcccchhhhhhhhhccC--ccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccccc-ce
Q psy6665          76 FYVAISVIAMGPSPAIVYITEVAR--PDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIPSP-VW  148 (420)
Q Consensus        76 ~l~G~~~~~~~~~~~~~~i~e~~~--~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~~~-~~  148 (420)
                      ++..+|.+ ...+.+-+++.|...  +++|+...+.......+|.+++..+++.+    ++|..|.+.+++..+..+ ..
T Consensus        94 ~la~~g~a-~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~  172 (433)
T PF03092_consen   94 FLASFGYA-FADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVAL  172 (433)
T ss_pred             HHHHHHHH-HHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHH
Confidence            77788888 888889999999884  34467777888888888988888887766    677777766555444311 11


Q ss_pred             eeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHh--hccccchHHHHHHHHHHHHHhcchhh-
Q psy6665         149 LLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMV--TMATGIKPLLVITVLFALQQLAGIYI-  225 (420)
Q Consensus       149 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-  225 (420)
                      ...+++.+..........++.   .        +...  ...++...+.++  ..+..+++.....++...... .... 
T Consensus       173 ~~~~e~~~~~~~~~~~~~~~~---~--------~~~~--~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~a~  238 (433)
T PF03092_consen  173 FLLEERKVRPADEVFSFGKEE---V--------PCLF--GSFREQLSELWRALQQRAIWQPILFFIFFFNLPPS-ISSAS  238 (433)
T ss_pred             Hhhhhccccccchhhcccccc---c--------chhh--HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccC-CCCcc
Confidence            111111000000000000000   0        0000  001122222222  122223322211111111100 0111 


Q ss_pred             HHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc----------------------hh
Q psy6665         226 TIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE----------------------KS  282 (420)
Q Consensus       226 ~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~----------------------~~  282 (420)
                      ..++.......-++ +...+....+..++.++|..+......+..-|+++..+.++                      +.
T Consensus       239 ~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~  318 (433)
T PF03092_consen  239 SFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQ  318 (433)
T ss_pred             EEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCe
Confidence            11111111111124 33344455555666677777766666666666666555444                      11


Q ss_pred             HHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcC
Q psy6665         283 LIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVG  347 (420)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g  347 (420)
                      +..+.-..+........+.|.. .+++|++|+...|+.+++...+.++|..++..+...+.+..+
T Consensus       319 ~f~lgd~~l~~~~~~i~~mP~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~  382 (433)
T PF03092_consen  319 WFALGDTILEEVIGMIAFMPSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG  382 (433)
T ss_pred             EEEEEhHHHHHHHHHHHHHHHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            1111112223333344455553 788999999999999999999999999999999988887766

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.32  E-value=1.2e-10  Score=108.48  Aligned_cols=150  Identities=13%  Similarity=0.040  Sum_probs=110.7

Q ss_pred             hHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHHH
Q psy6665         225 ITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILFY  292 (420)
Q Consensus       225 ~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~~  292 (420)
                      ......|.+.++.|. +.+.+.......++..++.++.|+++||+|||+.+..+...           .+...+....++
T Consensus        26 ~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  105 (394)
T PRK11652         26 IYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAI  105 (394)
T ss_pred             HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence            334456777777788 77888888999999999999999999999999988777655           222222222222


Q ss_pred             HHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhccc
Q psy6665         293 VAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFLP  372 (420)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  372 (420)
                      .+.......+....+..|.++.+.++.+.++.+....++..++|.+.+.+.+..| ++..+.+.++..++..+...++.|
T Consensus       106 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~  184 (394)
T PRK11652        106 QGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFG-WRACYLFLLLLGAGVTFSMARWMP  184 (394)
T ss_pred             HHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHHHHHhCC
Confidence            2222222244555677888898899999999999999999999999999988888 888888877766666555555667


Q ss_pred             cCC
Q psy6665         373 ETH  375 (420)
Q Consensus       373 ~~~  375 (420)
                      |++
T Consensus       185 ~~~  187 (394)
T PRK11652        185 ETR  187 (394)
T ss_pred             ccC
Confidence            654

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.32  E-value=1.4e-10  Score=107.93  Aligned_cols=151  Identities=11%  Similarity=0.113  Sum_probs=112.6

Q ss_pred             chhhHHHhHHHHHHh-hCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHH
Q psy6665         222 GIYITIFYAVQFLED-MGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFC  288 (420)
Q Consensus       222 ~~~~~~~~~~~~~~~-~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~  288 (420)
                      +.+....+.+.++++ .|. ..+.+.......+...+..++.|+++||+|||+.+..+...           ++...+..
T Consensus        25 ~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~  104 (400)
T PRK11646         25 GFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWL  104 (400)
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            345566677777654 488 78888888888899999999999999999999998877766           22222333


Q ss_pred             HHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhh
Q psy6665         289 ILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVY  368 (420)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  368 (420)
                      .....+.......+...+++.|.+|+++|+++.|+.+....++..++|.+.+.+. ..| ++..+++.+...++..++..
T Consensus       105 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g-~~~~f~~~~~~~~~~~i~~~  182 (400)
T PRK11646        105 SCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYD-FRLVCATGAVLFVLAAAFNA  182 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh-HHHHHHHHHHHHHHHHHHHH
Confidence            3333332222334566688899999999999999999999999999999999988 567 88888887777666655554


Q ss_pred             hccccC
Q psy6665         369 IFLPET  374 (420)
Q Consensus       369 ~~~~~~  374 (420)
                      ...||.
T Consensus       183 ~~~~~~  188 (400)
T PRK11646        183 WLLPAY  188 (400)
T ss_pred             HhCCcc
Confidence            555553

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.31  E-value=6.3e-12  Score=116.18  Aligned_cols=152  Identities=11%  Similarity=-0.006  Sum_probs=114.0

Q ss_pred             hhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHH
Q psy6665         223 IYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCIL  290 (420)
Q Consensus       223 ~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~  290 (420)
                      ...+....|.+.++.|. ..+.+.......++..++.++.|+++||+|||+.+..+..+           .+...+....
T Consensus        11 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (379)
T TIGR00881        11 RKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALW   90 (379)
T ss_pred             HHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            34455666777667688 77888999999999999999999999999999998887765           2222233333


Q ss_pred             HHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHH-HhHHHHHhcCcchHHHHHHHHHHHHHHHHhhh
Q psy6665         291 FYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQ-YYPWFKDSVGGSAMVQWFFALISVISIVYVYI  369 (420)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~-~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  369 (420)
                      ++.+.......+...+++.|.+|+++|+++.++.+....+|..++|. +.+.+.+..+ ++..+.+.+++.++..++.+.
T Consensus        91 ~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  169 (379)
T TIGR00881        91 ALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYS-WHWVFIVPGIIAIIVSLICFL  169 (379)
T ss_pred             HHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHhe
Confidence            33333333345667789999999999999999999999999999994 6566666666 788888888777776666666


Q ss_pred             ccccCC
Q psy6665         370 FLPETH  375 (420)
Q Consensus       370 ~~~~~~  375 (420)
                      +.+|++
T Consensus       170 ~~~~~~  175 (379)
T TIGR00881       170 LLRDSP  175 (379)
T ss_pred             eeCCCc
Confidence            666654

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.31  E-value=1.1e-10  Score=109.91  Aligned_cols=146  Identities=18%  Similarity=0.180  Sum_probs=108.1

Q ss_pred             HHHHHHHHHhcchhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc---------
Q psy6665         211 ITVLFALQQLAGIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE---------  280 (420)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~---------  280 (420)
                      .+.+..+..........+..|.+.++.|. +.+.+.......++..++.++.|+++||+|||+.+..+...         
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~  101 (426)
T PRK12307         22 SAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSG  101 (426)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence            33333333333445556666777677788 77888888899999999999999999999999998877765         


Q ss_pred             --hhHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHH
Q psy6665         281 --KSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFA  357 (420)
Q Consensus       281 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~  357 (420)
                        .+...+....++.+.......+....++.|.+|+++|+++.++......+|..+++.+.+.+.+..+ ++..+++..
T Consensus       102 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~-w~~~f~i~~  179 (426)
T PRK12307        102 LASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYG-WRAAFFVGL  179 (426)
T ss_pred             HHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCC-HHHHHHHHH
Confidence              2233333333333333334456667889999999999999999999999999999999988888888 777776543

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.31  E-value=1.1e-10  Score=108.95  Aligned_cols=152  Identities=14%  Similarity=0.053  Sum_probs=113.2

Q ss_pred             hhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHH
Q psy6665         223 IYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCIL  290 (420)
Q Consensus       223 ~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~  290 (420)
                      ...+....|.+.++.|. +.+.+.......++..++.++.|.++||+|||+.+..+...           .+...+....
T Consensus        29 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~  108 (406)
T PRK15402         29 NDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLR  108 (406)
T ss_pred             hhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence            44444556777777788 67778888888999999999999999999999998877655           2222222222


Q ss_pred             HHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhc
Q psy6665         291 FYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIF  370 (420)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  370 (420)
                      ++.+.......+...+.+.|.+|++.|.+..++......++..++|.+.+.+.+..+ ++..+++.+++.++..+..+..
T Consensus       109 ~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~-w~~~~~~~~~~~~~~~~~~~~~  187 (406)
T PRK15402        109 FLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLP-WRGMFVLFAALAALSFFGLWRA  187 (406)
T ss_pred             HHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHHHHHHHHh
Confidence            222222222345666888899999999999999988888999999999999988888 8888888888877777666556


Q ss_pred             cccCC
Q psy6665         371 LPETH  375 (420)
Q Consensus       371 ~~~~~  375 (420)
                      .||++
T Consensus       188 ~~~~~  192 (406)
T PRK15402        188 MPETA  192 (406)
T ss_pred             CCCCC
Confidence            67654

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.31  E-value=3.6e-11  Score=113.37  Aligned_cols=147  Identities=12%  Similarity=0.023  Sum_probs=105.6

Q ss_pred             HHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-------h-------hHH-HHHHH
Q psy6665         226 TIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-------K-------SLI-PVFCI  289 (420)
Q Consensus       226 ~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-------~-------~~~-~~~~~  289 (420)
                      .....|.+. +.|+ +.+.+.......++..++.++.|+++||+|||+.+..+..+       .       ... .+...
T Consensus        46 ~~~~~p~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  124 (438)
T TIGR00712        46 FALAMPYLV-EQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVL  124 (438)
T ss_pred             HHhhhHHHH-HcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHH
Confidence            444556554 4588 78888899999999999999999999999999887776554       0       011 11111


Q ss_pred             HHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHh-cCcchHHHHHHHHHHHHHHHHhh
Q psy6665         290 LFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDS-VGGSAMVQWFFALISVISIVYVY  368 (420)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~  368 (420)
                      .+..+.......+.....+.|.+|+++|++++|+.+....+++.++|.+.+...+. .+ |+..|++.++++++..+..+
T Consensus       125 ~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~-w~~~f~~~~~~~~i~~~~~~  203 (438)
T TIGR00712       125 LFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFND-WHAALYFPAICAIIVALFAF  203 (438)
T ss_pred             HHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHH
Confidence            11222222222344557788999999999999999999999999998887765553 45 88888888888877776666


Q ss_pred             hccccC
Q psy6665         369 IFLPET  374 (420)
Q Consensus       369 ~~~~~~  374 (420)
                      ++.||+
T Consensus       204 ~~~~~~  209 (438)
T TIGR00712       204 AMMRDT  209 (438)
T ss_pred             HhccCC
Confidence            666664

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.29  E-value=9.7e-11  Score=110.89  Aligned_cols=148  Identities=11%  Similarity=0.038  Sum_probs=102.5

Q ss_pred             HHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-------h--------hHHHHHHH
Q psy6665         226 TIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-------K--------SLIPVFCI  289 (420)
Q Consensus       226 ~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-------~--------~~~~~~~~  289 (420)
                      +....|.+.++ |+ ..+.+.......++..++.++.|+++||+|||+++..+..+       .        +...+...
T Consensus        48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  126 (452)
T PRK11273         48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVL  126 (452)
T ss_pred             HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHH
Confidence            44566766665 88 78888899999999999999999999999999988877655       0        11112222


Q ss_pred             HHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHH-HHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhh
Q psy6665         290 LFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFF-ALQYYPWFKDSVGGSAMVQWFFALISVISIVYVY  368 (420)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~-~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  368 (420)
                      .++.+.+.....+.....+.|.+|+++|++++|+.+....+++.+ +|.+...+....| |+..+++.++++++..++..
T Consensus       127 ~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g-w~~~f~i~~~~~~~~~~l~~  205 (452)
T PRK11273        127 LFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFND-WHAALYMPAFAAILVALFAF  205 (452)
T ss_pred             HHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHH
Confidence            222222222233444567788999999999999999998888754 4444333333335 88888888877777666666


Q ss_pred             hccccCC
Q psy6665         369 IFLPETH  375 (420)
Q Consensus       369 ~~~~~~~  375 (420)
                      ++.||+.
T Consensus       206 ~~~~~~~  212 (452)
T PRK11273        206 AMMRDTP  212 (452)
T ss_pred             HHccCCH
Confidence            6666653

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.29  E-value=8.8e-11  Score=108.61  Aligned_cols=150  Identities=14%  Similarity=0.216  Sum_probs=116.4

Q ss_pred             hHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHHH
Q psy6665         225 ITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILFY  292 (420)
Q Consensus       225 ~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~~  292 (420)
                      ......|.+.++.|. +.+.+.......++..++.++.|+++||+|||+.+..+..+           .+........+.
T Consensus         9 ~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l   88 (377)
T PRK11102          9 MYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFL   88 (377)
T ss_pred             HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence            345667788887788 78888888999999999999999999999999998877665           222223333333


Q ss_pred             HHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhccc
Q psy6665         293 VAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFLP  372 (420)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  372 (420)
                      .+.......+...++..|.+|+++|+++.++.+....++..++|.+.+.+.+..| ++..+.+.+.++++..+...+..|
T Consensus        89 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  167 (377)
T PRK11102         89 HGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS-WHAIFWVLALAAILAAALVFFFIP  167 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHHHHHHHhCC
Confidence            3333333345666889999999999999999999999999999999999999888 888888888877777666666666


Q ss_pred             cCC
Q psy6665         373 ETH  375 (420)
Q Consensus       373 ~~~  375 (420)
                      |+.
T Consensus       168 ~~~  170 (377)
T PRK11102        168 ETL  170 (377)
T ss_pred             ccC
Confidence            653

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.29  E-value=1.4e-10  Score=108.48  Aligned_cols=149  Identities=13%  Similarity=0.077  Sum_probs=109.1

Q ss_pred             HHHhcchhhHHHhHHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhcc-CchhhHhhhccc--------h--h-
Q psy6665         217 LQQLAGIYITIFYAVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTY-GRRSLTMFSQIE--------K--S-  282 (420)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~--------~--~-  282 (420)
                      ......++.+..++|.|+.+. |+ ..++............++.+++|+++||+ |||+.+..+..+        .  . 
T Consensus        19 ~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~   98 (493)
T PRK15462         19 IWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEI   98 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence            333445778888999998775 88 77777888888888899999999999999 999998877665        0  0 


Q ss_pred             HHHHHHHHHHHHHHhhc-hhhHHHHHhcccCChh--hhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHH
Q psy6665         283 LIPVFCILFYVAISVIG-MLSIPWTMTAEIFPLE--IRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALI  359 (420)
Q Consensus       283 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~--~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~  359 (420)
                      ..............+.+ ..+...++..|.+|++  .|.+++++.+...++|+.++|.+.+++.+..| ++..|.+.++.
T Consensus        99 ~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~G-w~~~F~iaaig  177 (493)
T PRK15462         99 HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYS-WAMGFGLAAVG  177 (493)
T ss_pred             chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhC-hHHHHHHHHHH
Confidence            00111111111112222 2355568899999975  69999999999999999999999999999888 88888876655


Q ss_pred             HHHHHHH
Q psy6665         360 SVISIVY  366 (420)
Q Consensus       360 ~~~~~~~  366 (420)
                      .+++.+.
T Consensus       178 m~l~li~  184 (493)
T PRK15462        178 MIAGLVI  184 (493)
T ss_pred             HHHHHHH
Confidence            4444443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.26  E-value=3.6e-10  Score=104.04  Aligned_cols=155  Identities=17%  Similarity=0.165  Sum_probs=107.1

Q ss_pred             HHhcchhhHHHhHHH-HHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------h-hH
Q psy6665         218 QQLAGIYITIFYAVQ-FLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------K-SL  283 (420)
Q Consensus       218 ~~~~~~~~~~~~~~~-~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~-~~  283 (420)
                      ......+....+.|. +.++.|. +.+.+.......++..++.++.|+++||+|||+.+..+..+           . +.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~   91 (366)
T TIGR00886        12 LSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSY   91 (366)
T ss_pred             HHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            333345667777886 4455588 77888899999999999999999999999999988877665           2 33


Q ss_pred             HHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHh----------cCcchHHH
Q psy6665         284 IPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDS----------VGGSAMVQ  353 (420)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~----------~g~~~~~~  353 (420)
                      ..+....++.+.. .+..+....++.|.+|+++|+.+.++......+|..+++.+.+.+.+.          .+ ++..+
T Consensus        92 ~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~-w~~~~  169 (366)
T TIGR00886        92 SVLLLLRLFIGIA-GGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLA-WGWAF  169 (366)
T ss_pred             HHHHHHHHHHHHh-chhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccc-ccchh
Confidence            3333333333332 333444568889999999999999999988888888888887766653          24 66666


Q ss_pred             -HHHHHHHHHHHHHhhhccccC
Q psy6665         354 -WFFALISVISIVYVYIFLPET  374 (420)
Q Consensus       354 -~~~~~~~~~~~~~~~~~~~~~  374 (420)
                       ...+++..+..++.+...+|+
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~  191 (366)
T TIGR00886       170 VIVPAGILLLPALLIFFVGADT  191 (366)
T ss_pred             HHHHHHHHHHHHHHHHHhcccC
Confidence             333444444444444444543

>KOG1330|consensus

Probab=99.26  E-value=4.5e-12  Score=113.11  Aligned_cols=169  Identities=16%  Similarity=0.075  Sum_probs=131.9

Q ss_pred             HHHHHHHHhcchhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc----------
Q psy6665         212 TVLFALQQLAGIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE----------  280 (420)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~----------  280 (420)
                      .++....+..--+.+..-.+..-+..|. +...+.+.....++..+++++.|++.||+.|++++.++..+          
T Consensus        38 l~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~f  117 (493)
T KOG1330|consen   38 LCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGF  117 (493)
T ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHH
Confidence            3333334443444444444444444477 77888999999999999999999999999999998888777          


Q ss_pred             -hhHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHH
Q psy6665         281 -KSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALI  359 (420)
Q Consensus       281 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~  359 (420)
                       .+++.+++.-.+.+..-.++.|+..++++|.+|.++|++++++.++...+|+.+|-.+.+.+.+..+.|++.+...+++
T Consensus       118 s~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl  197 (493)
T KOG1330|consen  118 SNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVL  197 (493)
T ss_pred             HHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHH
Confidence             3444444444455555556788888999999999999999999999999999999888888888888788999999999


Q ss_pred             HHHHHHHhhhccccCCCCChH
Q psy6665         360 SVISIVYVYIFLPETHGRTLL  380 (420)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~  380 (420)
                      .++..++..++.+|..++..+
T Consensus       198 ~vi~~~L~~~f~~eP~rga~~  218 (493)
T KOG1330|consen  198 GVIVGLLVFLFVREPERGARD  218 (493)
T ss_pred             HHHHHHHHHhhccCccccccc
Confidence            999999998888887765433

>PRK03699 putative transporter; Provisional

Probab=99.26  E-value=3.8e-10  Score=104.92  Aligned_cols=160  Identities=13%  Similarity=0.016  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHHHHhcchhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----
Q psy6665         207 PLLVITVLFALQQLAGIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----  280 (420)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----  280 (420)
                      +..+.+.+..+.............|.+.++.|. ..+.+.......++..++.++.|++.||+|||+.+..+..+     
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~   86 (394)
T PRK03699          7 KLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAV   86 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            334444343443333345666778888887788 77888888888999999999999999999999988877654     


Q ss_pred             ------hhHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHh-cCcchHHH
Q psy6665         281 ------KSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDS-VGGSAMVQ  353 (420)
Q Consensus       281 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~-~g~~~~~~  353 (420)
                            ++...+.....+.+.......+....++.|.+|++.|+.+.+..+....+++.++|.+.+.+.+. .| ++..+
T Consensus        87 ~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~g-w~~~f  165 (394)
T PRK03699         87 AGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIE-WYWVY  165 (394)
T ss_pred             HHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-HHHHH
Confidence                  22222222222222222223445567889999999999999999888889999999998887654 56 88888


Q ss_pred             HHHHHHHHHHHHHh
Q psy6665         354 WFFALISVISIVYV  367 (420)
Q Consensus       354 ~~~~~~~~~~~~~~  367 (420)
                      .+.+++.++..++.
T Consensus       166 ~~~~~~~~~~~~~~  179 (394)
T PRK03699        166 ACIGLVYVAIFILT  179 (394)
T ss_pred             HHHHHHHHHHHHHH
Confidence            87777666655443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.25  E-value=2.5e-10  Score=109.66  Aligned_cols=145  Identities=17%  Similarity=0.144  Sum_probs=108.0

Q ss_pred             HHHHHHHHHhcchhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc---------
Q psy6665         211 ITVLFALQQLAGIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE---------  280 (420)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~---------  280 (420)
                      ...+..+.............|.+.++.|. ..+.+.......++..++.++.|+++||+|||+.+..+..+         
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~  103 (496)
T PRK03893         24 AAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACG  103 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence            33333333333445556667777777788 77778888888999999999999999999999988777654         


Q ss_pred             --hhHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHH
Q psy6665         281 --KSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFF  356 (420)
Q Consensus       281 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~  356 (420)
                        .+...+....++.+....+..+....++.|.+|++.|+.+.++......+|..++|.+.+.+.+..+ ++..+.+.
T Consensus       104 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-w~~~f~~~  180 (496)
T PRK03893        104 FAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWG-WRALFFIG  180 (496)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHH
Confidence              2333333333333333334456667889999999999999999999999999999999999999888 77776653

>PRK11043 putative transporter; Provisional

Probab=99.25  E-value=6.6e-10  Score=103.66  Aligned_cols=143  Identities=15%  Similarity=0.106  Sum_probs=105.1

Q ss_pred             HHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHHHHH
Q psy6665         227 IFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILFYVA  294 (420)
Q Consensus       227 ~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~  294 (420)
                      ....|.+.++.|. +.+.+.......++..++.++.|+++||+|||+.+..+..+           .+...+....++.+
T Consensus        26 ~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G  105 (401)
T PRK11043         26 LPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQA  105 (401)
T ss_pred             HhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            3334455566688 78888899999999999999999999999999998877655           22222222222222


Q ss_pred             HHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhc
Q psy6665         295 ISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIF  370 (420)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  370 (420)
                      .......+...++..|.+|++.++...+..+....++..++|.+.+.+.+..| ++..+++.+++.++..+..+..
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~  180 (401)
T PRK11043        106 VGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFG-WQAIFATLFAITLLLILPTLRL  180 (401)
T ss_pred             hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHHHHHc
Confidence            22222234445778899999989999999998899999999999999999888 8888888877777766655433

>TIGR00897 2A0118 polyol permease family

Probab=99.23  E-value=4.3e-10  Score=104.83  Aligned_cols=149  Identities=11%  Similarity=0.020  Sum_probs=101.4

Q ss_pred             hhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc---h------------hHHHH
Q psy6665         223 IYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE---K------------SLIPV  286 (420)
Q Consensus       223 ~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~---~------------~~~~~  286 (420)
                      ......+.+.+.++.|. ..+.+.......++..++.++.|++.||+|||+.+..+..+   .            ++..+
T Consensus        29 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l  108 (402)
T TIGR00897        29 DGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLI  108 (402)
T ss_pred             hhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHH
Confidence            44456677888888788 78899999999999999999999999999999988776655   0            11111


Q ss_pred             HHHHHHHHHHhhc-hhhHHHHHhcccCChhhhhhhHHHHHHHHHHHH-HHHHHHhHHHHHhcCcchHHHHHHHHHHHHHH
Q psy6665         287 FCILFYVAISVIG-MLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILM-FFALQYYPWFKDSVGGSAMVQWFFALISVISI  364 (420)
Q Consensus       287 ~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~-~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  364 (420)
                      ...... .+.+.+ ..+...+...+.+|+++|++++|+.+....+|. .++|.+.+.+.+..| +...++.......+..
T Consensus       109 ~~~~~i-~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g-~~~~~~~~~~~~~~~~  186 (402)
T TIGR00897       109 LLFYGI-RGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG-EMNTLWSALAFVLTGG  186 (402)
T ss_pred             HHHHHH-HHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-hHHHHHHHHHHHHHHH
Confidence            111111 111111 223334667788899999999999999999986 578998888888877 5444444433333333


Q ss_pred             HHhhhcccc
Q psy6665         365 VYVYIFLPE  373 (420)
Q Consensus       365 ~~~~~~~~~  373 (420)
                      ++..++.++
T Consensus       187 ~~~~~~~~~  195 (402)
T TIGR00897       187 VIALFSNKD  195 (402)
T ss_pred             HHHHhccCC
Confidence            333334443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.23  E-value=3.2e-10  Score=107.55  Aligned_cols=154  Identities=12%  Similarity=0.045  Sum_probs=113.4

Q ss_pred             HHHHHHHHhcchhhHHHhHHHHHHh---hCC-cchHHHHHHHHHHHHHHHHHHHHHhhhc-cCchhhHhhhccc------
Q psy6665         212 TVLFALQQLAGIYITIFYAVQFLED---MGS-RMNVYLATVLVGVVRMVFGLLTSQLLRT-YGRRSLTMFSQIE------  280 (420)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~---~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~------  280 (420)
                      .....+....+++....++|.|+++   .|+ ..+++.......+...++.+++|+++|| +|||+++..+..+      
T Consensus        15 l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~   94 (475)
T TIGR00924        15 LFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHF   94 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence            3334444444577888899999876   477 7788899999999999999999999999 8999998888766      


Q ss_pred             -----hhHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhh---hhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHH
Q psy6665         281 -----KSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEI---RGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMV  352 (420)
Q Consensus       281 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~  352 (420)
                           .+...+.....+.+.......+...++.+|.+|++.   |+++.++.+...++|..++|.+.+++.++.| ++..
T Consensus        95 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g-~~~~  173 (475)
T TIGR00924        95 MLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG-YHVG  173 (475)
T ss_pred             HHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC-hHHH
Confidence                 111122222222222222234566688889988653   8889999999999999999999999999888 8888


Q ss_pred             HHHHHHHHHHHHHH
Q psy6665         353 QWFFALISVISIVY  366 (420)
Q Consensus       353 ~~~~~~~~~~~~~~  366 (420)
                      |.+.++..+++.+.
T Consensus       174 f~~~~~~~~~~~l~  187 (475)
T TIGR00924       174 FNLAAVGMVIGLLT  187 (475)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88777555554433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.22  E-value=1.6e-09  Score=100.41  Aligned_cols=168  Identities=16%  Similarity=0.159  Sum_probs=110.0

Q ss_pred             hHHHHHHHHHHHHHhcchhhHHHhHHHHHH-hhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc---
Q psy6665         206 KPLLVITVLFALQQLAGIYITIFYAVQFLE-DMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE---  280 (420)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~---  280 (420)
                      ++.++...+.+...+..-+......+.+.+ +.|+ ..+.+.......+...+.++..|++.||+|.|+++..+..+   
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i  112 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILII  112 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            344555555454444434444444555544 4578 78888888889999999999999999999999888777666   


Q ss_pred             ----h---------hHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHH----
Q psy6665         281 ----K---------SLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFK----  343 (420)
Q Consensus       281 ----~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~----  343 (420)
                          .         ++..++...++.+. ..+..+.....+++.+|+++||++.|+....+++|..+++++.+.+.    
T Consensus       113 ~~~~~~~a~~~~~~s~~~lli~r~l~Gi-gg~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l  191 (462)
T PRK15034        113 PCVWLGIAVQNPNTPFGIFIVIALLCGF-AGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPV  191 (462)
T ss_pred             HHHHHHHHHcccCCCHHHHHHHHHHHHH-HHHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence                1         22223333333333 33345566788899999999999999998777777776666665533    


Q ss_pred             -HhcCc------------chHHHHHHHHHHHHHHHHhhhccccC
Q psy6665         344 -DSVGG------------SAMVQWFFALISVISIVYVYIFLPET  374 (420)
Q Consensus       344 -~~~g~------------~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (420)
                       +..|.            ++...+++..+.++..++.+++.++.
T Consensus       192 ~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~  235 (462)
T PRK15034        192 FAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDI  235 (462)
T ss_pred             HHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence             32220            34455566666666666666555543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.21  E-value=1.2e-10  Score=107.55  Aligned_cols=149  Identities=17%  Similarity=0.169  Sum_probs=109.1

Q ss_pred             hhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHH
Q psy6665         223 IYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCIL  290 (420)
Q Consensus       223 ~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~  290 (420)
                      .+....+.|.+.++.|. ..+.+.......++..++.++.|+++||+|||+.+..+..+           .+...+....
T Consensus        19 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (377)
T TIGR00890        19 VYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTY   98 (377)
T ss_pred             HhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566678888888788 78889999999999999999999999999999998877665           2222222222


Q ss_pred             HHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhc
Q psy6665         291 FYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIF  370 (420)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  370 (420)
                      ...+.......+.......|.+| ++|+++.++......+|..+++.+.+.+.+..| ++..+.+.+++.++..+..+++
T Consensus        99 ~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~~  176 (377)
T TIGR00890        99 GLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEG-VPAAFIYMGIIFLLVIVLGAFL  176 (377)
T ss_pred             HHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHh
Confidence            22222222223344456677777 569999999999999998887777777777777 8888888888887777666555


Q ss_pred             ccc
Q psy6665         371 LPE  373 (420)
Q Consensus       371 ~~~  373 (420)
                      .++
T Consensus       177 ~~~  179 (377)
T TIGR00890       177 IGY  179 (377)
T ss_pred             eec
Confidence            544

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.20  E-value=5e-10  Score=105.92  Aligned_cols=147  Identities=12%  Similarity=0.142  Sum_probs=107.1

Q ss_pred             hhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHH
Q psy6665         224 YITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILF  291 (420)
Q Consensus       224 ~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~  291 (420)
                      ..+..+.|.+.++.|. ..+.+.......+...++.++.|+++||+|||+.++.+..+           .+...+.....
T Consensus        36 ~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~  115 (455)
T TIGR00892        36 KAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAG  115 (455)
T ss_pred             cchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            4456677888888788 67788888888888889999999999999999988877655           11112211111


Q ss_pred             HHHHHhhch-hhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhc
Q psy6665         292 YVAISVIGM-LSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIF  370 (420)
Q Consensus       292 ~~~~~~~~~-~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  370 (420)
                      ...+.+.+. .+...+++.+.+| ++|+++.|+.+....++..++|.+.+.+.+..| ++..|++.+++.++..+..++.
T Consensus       116 ~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g-wr~~f~~~~~~~~~~~v~~~~~  193 (455)
T TIGR00892       116 FITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFG-WRGSFLILGGLLLHCCVCGALM  193 (455)
T ss_pred             HHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHh
Confidence            111222222 2444566778886 789999999999999999999999999999988 9999999888777665554444


Q ss_pred             cc
Q psy6665         371 LP  372 (420)
Q Consensus       371 ~~  372 (420)
                      .+
T Consensus       194 ~~  195 (455)
T TIGR00892       194 RP  195 (455)
T ss_pred             CC
Confidence            33

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.20  E-value=1.9e-10  Score=109.77  Aligned_cols=133  Identities=15%  Similarity=0.109  Sum_probs=96.6

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc------------hh--HHHHHHHHHHHHHHhhchhhHHH
Q psy6665         240 RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE------------KS--LIPVFCILFYVAISVIGMLSIPW  305 (420)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~------------~~--~~~~~~~~~~~~~~~~~~~~~~~  305 (420)
                      ..+.+.......++..++.++.|+++||+|||+.+..+..+            ..  ...++...++.+.......+...
T Consensus        70 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~  149 (481)
T TIGR00879        70 SSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVP  149 (481)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHH
Confidence            46778888999999999999999999999999988777665            01  11222222333333333456667


Q ss_pred             HHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHh---HHHHHhcCcchHHHHHHHHHHHHHHHHhhhccccC
Q psy6665         306 TMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYY---PWFKDSVGGSAMVQWFFALISVISIVYVYIFLPET  374 (420)
Q Consensus       306 ~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~---g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (420)
                      +++.|.+|+++|+.+.++.+....+|..+++.+.   +...+..+ ++..+.+.+...++..+ ..+++||+
T Consensus       150 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-w~~~f~~~~~~~~~~~~-~~~~l~~~  219 (481)
T TIGR00879       150 MYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLG-WRIPLGLQLIPAGLLFL-GLFFLPES  219 (481)
T ss_pred             HHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCcc-HHHHHHHHHHHHHHHHH-HHhcCCCC
Confidence            8999999999999999999999999999999988   55555666 78888775555444443 34556665

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.19  E-value=1.5e-09  Score=103.74  Aligned_cols=136  Identities=15%  Similarity=0.077  Sum_probs=98.3

Q ss_pred             CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-------hh-------------H---HHHHHHHHHH
Q psy6665         238 GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-------KS-------------L---IPVFCILFYV  293 (420)
Q Consensus       238 g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-------~~-------------~---~~~~~~~~~~  293 (420)
                      +. +.+.+...+...++.+++.++.|+++||+|||+++..+..+       ..             +   ..++..-++.
T Consensus        51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~  130 (479)
T PRK10077         51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIG  130 (479)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHH
Confidence            45 56777888999999999999999999999999998877665       00             0   1112222333


Q ss_pred             HHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHH--------HhcCcchHHHHHHHHHHHHHHH
Q psy6665         294 AISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFK--------DSVGGSAMVQWFFALISVISIV  365 (420)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~--------~~~g~~~~~~~~~~~~~~~~~~  365 (420)
                      +....+..+...+++.|.+|+++|+.++++.+....+|..+++.+.+.+.        +..| |+..+++.++..++..+
T Consensus       131 G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g-Wr~~f~~~~~~~~~~~~  209 (479)
T PRK10077        131 GIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDG-WRYMFASEAIPALLFLM  209 (479)
T ss_pred             hhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCC-hHHHHHHHHHHHHHHHH
Confidence            33334446677799999999999999999999999999888877655443        2345 77888777666666544


Q ss_pred             HhhhccccCC
Q psy6665         366 YVYIFLPETH  375 (420)
Q Consensus       366 ~~~~~~~~~~  375 (420)
                      . .+++||+.
T Consensus       210 ~-~~~l~~s~  218 (479)
T PRK10077        210 L-LYFVPETP  218 (479)
T ss_pred             H-HHcCCCCc
Confidence            3 45677764

>KOG2615|consensus

Probab=99.19  E-value=1.3e-10  Score=101.16  Aligned_cols=137  Identities=13%  Similarity=0.175  Sum_probs=97.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc----------hhHHHHHHHHHHHHHHhhchhhHHHHHhcc
Q psy6665         241 MNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE----------KSLIPVFCILFYVAISVIGMLSIPWTMTAE  310 (420)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (420)
                      .-++...+.+++.+++.++..|.++||+|||.++..|.+.          +.....+...-+.++..-+...+..++++|
T Consensus        68 ~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rAiisd  147 (451)
T KOG2615|consen   68 FYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRAIISD  147 (451)
T ss_pred             hhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHh
Confidence            3567788889999999999999999999999999988877          111122222122333333445566799999


Q ss_pred             cCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHH---hcCcchHHH--HHHHHHHHHHHHHhhhccccCCCC
Q psy6665         311 IFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKD---SVGGSAMVQ--WFFALISVISIVYVYIFLPETHGR  377 (420)
Q Consensus       311 ~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~---~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  377 (420)
                      ++++++|+.+++..+....+|.++||.+.|++..   ..|++...+  ++..++..........++|||-..
T Consensus       148 V~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~  219 (451)
T KOG2615|consen  148 VVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPL  219 (451)
T ss_pred             hcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccc
Confidence            9999999999999999999999999999999887   566333333  222222222233344578887543

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.19  E-value=7.2e-10  Score=102.42  Aligned_cols=152  Identities=13%  Similarity=0.078  Sum_probs=107.5

Q ss_pred             hhhHHHhHHHHHHh-hCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhh-hccc-----------hhHHHHHH
Q psy6665         223 IYITIFYAVQFLED-MGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMF-SQIE-----------KSLIPVFC  288 (420)
Q Consensus       223 ~~~~~~~~~~~~~~-~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~-~~~~-----------~~~~~~~~  288 (420)
                      ........|.++++ .|. ..+.+.......+...+..++.|.++||+|||+.++. +...           +++..+..
T Consensus        13 ~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   92 (375)
T TIGR00899        13 GALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLV   92 (375)
T ss_pred             HHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            45556667777654 477 7788888888889999999999999999998876543 2222           22222222


Q ss_pred             HHHHHHHHhhchhhHHHHHhcccCChhhhhhh--HHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHH
Q psy6665         289 ILFYVAISVIGMLSIPWTMTAEIFPLEIRGIA--QGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVY  366 (420)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~--~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  366 (420)
                      .............|...++..|..|++.|+.+  .+.......+|..++|.+.+.+.+..| ++..+++.+.+.++..++
T Consensus        93 ~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~-~~~~f~~~~~~~~~~~~~  171 (375)
T TIGR00899        93 LGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFG-FTVMFLTAALAFVLCGVL  171 (375)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcc-cHHHHHHHHHHHHHHHHH
Confidence            22222233333456666777788777666644  577778888999999999999999888 888998888887777777


Q ss_pred             hhhccccCC
Q psy6665         367 VYIFLPETH  375 (420)
Q Consensus       367 ~~~~~~~~~  375 (420)
                      .++++||.+
T Consensus       172 ~~~~~~~~~  180 (375)
T TIGR00899       172 VWLFLPSYP  180 (375)
T ss_pred             HHHhCCCcc
Confidence            666677643

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.19  E-value=1.5e-10  Score=110.14  Aligned_cols=151  Identities=11%  Similarity=-0.053  Sum_probs=108.1

Q ss_pred             hhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc----------------hhHHH
Q psy6665         223 IYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE----------------KSLIP  285 (420)
Q Consensus       223 ~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~----------------~~~~~  285 (420)
                      -..+....|.+.++.|. ..+.+...+.+.++..++.++.|+++||+|+|+.+..+.++                .+...
T Consensus        45 r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (467)
T PRK09556         45 RKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGL  124 (467)
T ss_pred             hcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHH
Confidence            33445557888888788 78888899999999999999999999999999987555433                12222


Q ss_pred             HHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhc--CcchHHHHHHHHHHHHH
Q psy6665         286 VFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSV--GGSAMVQWFFALISVIS  363 (420)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~--g~~~~~~~~~~~~~~~~  363 (420)
                      ++...+..+.......+....++.|.+|+++|++++|+......+|..+++.+..++.+..  ++++..+.+.+++.++.
T Consensus       125 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~  204 (467)
T PRK09556        125 MIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALII  204 (467)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHH
Confidence            2222223333323335666789999999999999999999999999999998887776653  22556666666666666


Q ss_pred             HHHhhhcccc
Q psy6665         364 IVYVYIFLPE  373 (420)
Q Consensus       364 ~~~~~~~~~~  373 (420)
                      .++.+++.++
T Consensus       205 ~i~~~~~~~~  214 (467)
T PRK09556        205 GFIGLRYGSD  214 (467)
T ss_pred             HHHHHHhCCC
Confidence            5555555444

>PRK12382 putative transporter; Provisional

Probab=99.18  E-value=1.3e-09  Score=101.41  Aligned_cols=136  Identities=10%  Similarity=0.021  Sum_probs=97.4

Q ss_pred             chhhHHHhHHHHHH-hhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc---h---------------
Q psy6665         222 GIYITIFYAVQFLE-DMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE---K---------------  281 (420)
Q Consensus       222 ~~~~~~~~~~~~~~-~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~---~---------------  281 (420)
                      .........|.++. +.|. ..+.+...+...+...+++++.|+++||+|||+.+..+.+.   .               
T Consensus        30 ~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~  109 (392)
T PRK12382         30 TVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAP  109 (392)
T ss_pred             HHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchh
Confidence            34455556676654 4588 88899999999999999999999999999999998876443   0               


Q ss_pred             -hHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHH
Q psy6665         282 -SLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFAL  358 (420)
Q Consensus       282 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~  358 (420)
                       +...++....+.+.......+...++..|.+|+++|++++++.......+..++|.+.+.+.+..| +...+.+...
T Consensus       110 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~~~~~~~  186 (392)
T PRK12382        110 FKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFG-FAALALTTMV  186 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccC-hHHHHHHHHH
Confidence             011111122222222222234455777899999999999999999999999999999999988888 6654444333

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.18  E-value=1.2e-09  Score=102.38  Aligned_cols=150  Identities=14%  Similarity=0.081  Sum_probs=107.0

Q ss_pred             hhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc----------------hhHHH
Q psy6665         223 IYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE----------------KSLIP  285 (420)
Q Consensus       223 ~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~----------------~~~~~  285 (420)
                      ........|.+.++.+. +.+.+.......+..+++.++.|+++||+|||+.+..+..+                .+...
T Consensus        33 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (417)
T PRK10489         33 LGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLA  112 (417)
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHH
Confidence            44556677888777766 77788999999999999999999999999999887665432                01111


Q ss_pred             HHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHH
Q psy6665         286 VFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIV  365 (420)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  365 (420)
                      +....+..+.......+...++..|.+|+++|+++.++.+....++..++|.+.+.+.+..| +.+.+.+.++..++..+
T Consensus       113 l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~-~~~~~~~~~~~~~~~~~  191 (417)
T PRK10489        113 IYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGG-VAWNYGLAAAGTFITLL  191 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence            22222222222222234456788899999999999999999999999999999999998888 77777766665555544


Q ss_pred             HhhhccccC
Q psy6665         366 YVYIFLPET  374 (420)
Q Consensus       366 ~~~~~~~~~  374 (420)
                      .. ...|+.
T Consensus       192 ~~-~~l~~~  199 (417)
T PRK10489        192 PL-LRLPAL  199 (417)
T ss_pred             HH-HhCCCC
Confidence            43 445543

>KOG3098|consensus

Probab=99.18  E-value=3e-08  Score=90.88  Aligned_cols=107  Identities=8%  Similarity=-0.053  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh-HHHHHhhccccccchhHHHHHHHHHHhhccc
Q psy6665           9 LATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY-TQLIMTGQIEKSLIPVFCILFYVAISVIAMG   86 (420)
Q Consensus         9 ~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~l~G~~~~~~~   86 (420)
                      ....++-...+.+.+++ +.+.|+.|.|+.++++......-.....+. -+.++..-            .+.|+|.+ ..
T Consensus        53 y~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N~y~~yfss------------allG~Gaa-ll  119 (461)
T KOG3098|consen   53 YYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPNSYYLYFSS------------ALLGFGAA-LL  119 (461)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcchHHHHHHH------------HHhhhhHH-he
Confidence            34456667778888999 999999999999999999999888887777 77778888            99999999 87


Q ss_pred             chhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh
Q psy6665          87 PSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL  128 (420)
Q Consensus        87 ~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~  128 (420)
                      ...--.|++|..+++++.+..++..+....+.++|..+-..+
T Consensus       120 w~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~  161 (461)
T KOG3098|consen  120 WTGQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGIILFIY  161 (461)
T ss_pred             ecccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhheee
Confidence            777889999999999999999999888888888887654443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.17  E-value=7.6e-10  Score=105.09  Aligned_cols=141  Identities=13%  Similarity=0.077  Sum_probs=103.6

Q ss_pred             HHHhcchhhHHHhHHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhc-cCchhhHhhhccc-----------hh
Q psy6665         217 LQQLAGIYITIFYAVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRT-YGRRSLTMFSQIE-----------KS  282 (420)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~-----------~~  282 (420)
                      +....+++.+..+++.|+++. |+ ..++......+.....+..+++|+++|| +|||+++..+..+           ..
T Consensus        24 ~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~  103 (489)
T PRK10207         24 LWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLL  103 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhcc
Confidence            344456788888888888764 77 5666666666777777778899999999 9999999888777           11


Q ss_pred             -HHHHHHHHHHHHHHhhchhhHHHHHhcccCChh--hhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHH
Q psy6665         283 -LIPVFCILFYVAISVIGMLSIPWTMTAEIFPLE--IRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFAL  358 (420)
Q Consensus       283 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~  358 (420)
                       ...+.......+.......|...+++.|.+|++  .|+.++++.+...++|..++|.+.|++.++.| |+..|++.++
T Consensus       104 ~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~g-w~~~F~i~~i  181 (489)
T PRK10207        104 KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFG-YSVTYNLCGA  181 (489)
T ss_pred             chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhC-hHHHHHHHHH
Confidence             111112222222222334566678999999877  45788999999999999999999999999998 8888877544

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.17  E-value=1.6e-10  Score=109.97  Aligned_cols=136  Identities=11%  Similarity=0.068  Sum_probs=104.8

Q ss_pred             CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-------h------hHHHHHHHHHHHHHHhhchhhH
Q psy6665         238 GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-------K------SLIPVFCILFYVAISVIGMLSI  303 (420)
Q Consensus       238 g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-------~------~~~~~~~~~~~~~~~~~~~~~~  303 (420)
                      ++ ..+.+.....+.++..++.++.|+++||+|+|+.+..+.++       .      ....++...++.+.......+.
T Consensus        72 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~  151 (465)
T TIGR00894        72 KWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPA  151 (465)
T ss_pred             CCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhh
Confidence            55 56677888889999999999999999999999988877665       1      0112222223333333344667


Q ss_pred             HHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhc-CcchHHHHHHHHHHHHHHHHhhhccccC
Q psy6665         304 PWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSV-GGSAMVQWFFALISVISIVYVYIFLPET  374 (420)
Q Consensus       304 ~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (420)
                      ...++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+.. | ++..|.+.+++.++..++.+.+.++.
T Consensus       152 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~g-w~~~f~i~~~~~~~~~~~~~~~~~~~  222 (465)
T TIGR00894       152 THKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGG-WPMIFYVFGIVGCAWSLLWFVFPADD  222 (465)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCeehhhhhHHHHHHHHHHHHHhcCC
Confidence            7789999999999999999999999999999999999998884 7 88899888888777766665555443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.17  E-value=2.7e-09  Score=102.48  Aligned_cols=133  Identities=14%  Similarity=0.122  Sum_probs=93.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hh------HHHHHHHHHHHHHHhhchhhH
Q psy6665         241 MNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KS------LIPVFCILFYVAISVIGMLSI  303 (420)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~------~~~~~~~~~~~~~~~~~~~~~  303 (420)
                      .+.+.......++.+++.++.|+++||+|||+.+..+.++           ..      ...+....++.+....+..+.
T Consensus        56 ~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~  135 (502)
T TIGR00887        56 SVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPL  135 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHH
Confidence            3456778888899999999999999999999988766554           11      122223333333333334577


Q ss_pred             HHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHh-----------------------cCcchHHHHHHHHHH
Q psy6665         304 PWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDS-----------------------VGGSAMVQWFFALIS  360 (420)
Q Consensus       304 ~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~-----------------------~g~~~~~~~~~~~~~  360 (420)
                      ...+..|.+|++.|+++.++.+....+|..+++.+...+...                       .+ |+..+.+.++.+
T Consensus       136 ~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-WR~~~~~~~ip~  214 (502)
T TIGR00887       136 SAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYM-WRILIGFGAVPA  214 (502)
T ss_pred             HHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhccc-HHHHHHHHHHHH
Confidence            789999999999999999999999999999988887655431                       23 666665444444


Q ss_pred             HHHHHHhhhccccCC
Q psy6665         361 VISIVYVYIFLPETH  375 (420)
Q Consensus       361 ~~~~~~~~~~~~~~~  375 (420)
                      ++ .++..+++||+.
T Consensus       215 ~i-~~~~~~~lpESp  228 (502)
T TIGR00887       215 LL-ALYFRLTIPETP  228 (502)
T ss_pred             HH-HHHHHHhCCCCH
Confidence            43 333446788874

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.16  E-value=1.4e-09  Score=101.42  Aligned_cols=140  Identities=10%  Similarity=-0.007  Sum_probs=101.8

Q ss_pred             chhhHHHhHHHHHHh-hCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc--------------hh---
Q psy6665         222 GIYITIFYAVQFLED-MGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE--------------KS---  282 (420)
Q Consensus       222 ~~~~~~~~~~~~~~~-~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~--------------~~---  282 (420)
                      +........|.++++ .|. ..+.+.......+...+++++.|+++||+|||+++..+.+.              .+   
T Consensus        30 ~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~  109 (399)
T PRK05122         30 TIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPV  109 (399)
T ss_pred             HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccch
Confidence            355566677776654 487 78888999999999999999999999999999998887654              00   


Q ss_pred             --HHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHH
Q psy6665         283 --LIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALIS  360 (420)
Q Consensus       283 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  360 (420)
                        ...++...++.+.......+....+..|.+|+++|+++.++......++..++|.+.+.+.+..| ++..+.+..++.
T Consensus       110 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-~~~~~~~~~~~~  188 (399)
T PRK05122        110 LSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGG-LAGLGLLIMLLA  188 (399)
T ss_pred             hHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHccc-HHHHHHHHHHHH
Confidence              00111112222222222345555777899999999999999999889999999999999999888 766665555444


Q ss_pred             HH
Q psy6665         361 VI  362 (420)
Q Consensus       361 ~~  362 (420)
                      ++
T Consensus       189 ~~  190 (399)
T PRK05122        189 LL  190 (399)
T ss_pred             HH
Confidence            43

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.16  E-value=9.8e-10  Score=100.34  Aligned_cols=145  Identities=17%  Similarity=0.159  Sum_probs=112.3

Q ss_pred             chhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHH
Q psy6665         222 GIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCI  289 (420)
Q Consensus       222 ~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~  289 (420)
                      .........|.+.++.|. +.+.+.......+...++.++.|+++||+|||+.+..+...           .+.......
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (352)
T cd06174          14 DRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVG   93 (352)
T ss_pred             hhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            455667778888888777 77888889999999999999999999999999988777666           122222222


Q ss_pred             HHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHh
Q psy6665         290 LFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYV  367 (420)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  367 (420)
                      ....+.......+...++..|.+|+++|++..++.+....+|..++|.+.+.+.+..+ ++..+.+.+...++..+..
T Consensus        94 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  170 (352)
T cd06174          94 RFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLG-WRWLFLILAILGLLLALLL  170 (352)
T ss_pred             HHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHH
Confidence            2232222233356667999999999999999999999999999999999999999888 7777777776666655544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.14  E-value=9.2e-10  Score=86.02  Aligned_cols=124  Identities=17%  Similarity=0.267  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhh
Q psy6665         249 LVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIR  317 (420)
Q Consensus       249 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r  317 (420)
                      ...++.+++.++.+++.||++||+.+..+...           .+...........+.......+....+..|.+|+++|
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   85 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEER   85 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhh
Confidence            34677888999999999999999988776654           1122222222222222233456667889999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhcccc
Q psy6665         318 GIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFLPE  373 (420)
Q Consensus       318 ~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (420)
                      +++.++.+....++..++|.+.+.+.+..+ +...+.+.+....+..+..+...||
T Consensus        86 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        86 GVALGLMSAGIALGPLLGPPLGGVLAQFLG-WRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hHHHHHHHHhHHHHHHHhHHhHHHHhcccc-hHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            999999999999999999999999998877 7788888887777777766655554

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.13  E-value=3.7e-09  Score=98.12  Aligned_cols=146  Identities=14%  Similarity=0.166  Sum_probs=104.1

Q ss_pred             HHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccchhH--------HHHHHHHHHHHHH
Q psy6665         226 TIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIEKSL--------IPVFCILFYVAIS  296 (420)
Q Consensus       226 ~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~--------~~~~~~~~~~~~~  296 (420)
                      .....+.+..+.+. +.+.+.....+.+...+..++.|+++||+|||+++..+..+...        .......+..+..
T Consensus        22 ~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~  101 (393)
T PRK11195         22 LLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHPLLAYGLVGIG  101 (393)
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555666666 66678888888999999999999999999999998888766100        0112222333344


Q ss_pred             hhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhccccC
Q psy6665         297 VIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFLPET  374 (420)
Q Consensus       297 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (420)
                      .....|...+++.|.+|+++|++++|+.+....++..++|.+.|.+.+. . +...+.+.+...+++. +..+.+||.
T Consensus       102 ~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~-~~~~~~i~~~~~~~~~-~~~~~l~~~  176 (393)
T PRK11195        102 AAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-H-AEAALAVCALIYLLAA-LFNLFIPRL  176 (393)
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHH-HHHhcCCCC
Confidence            4445678789999999999999999999999999999999999999885 3 4555555444433333 333456654

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.11  E-value=3.1e-09  Score=98.70  Aligned_cols=140  Identities=14%  Similarity=0.007  Sum_probs=106.0

Q ss_pred             hhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHH
Q psy6665         223 IYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCIL  290 (420)
Q Consensus       223 ~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~  290 (420)
                      ........|.+.++.|. ..+.+...+...++..++.++.|++.||+|||+++..+..+           +++..++...
T Consensus        25 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r  104 (393)
T PRK09705         25 LTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSA  104 (393)
T ss_pred             hhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHH
Confidence            34566778888888888 78888999999999999999999999999999999988877           3344444444


Q ss_pred             HHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHH
Q psy6665         291 FYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVIS  363 (420)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  363 (420)
                      +..+.......+....++.+.+| ++|+.++|+.......|..+++.+.+++.++..+|+..+.++++..++.
T Consensus       105 ~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~  176 (393)
T PRK09705        105 LLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVA  176 (393)
T ss_pred             HHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            44333333334455577788887 7799999999999999999999999998887633766666555554443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.11  E-value=4e-09  Score=97.63  Aligned_cols=133  Identities=9%  Similarity=-0.057  Sum_probs=99.1

Q ss_pred             HHHHHHhcchhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------h
Q psy6665         214 LFALQQLAGIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------K  281 (420)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~  281 (420)
                      +..+...........+.|.+.++.|. ..+.+.......++..++.++.|+++||+|||+.+..+..+           +
T Consensus        13 ~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~   92 (381)
T PRK03633         13 CGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMV   92 (381)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33333444466677889999988888 78899999999999999999999999999999988777665           2


Q ss_pred             hHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhc
Q psy6665         282 SLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSV  346 (420)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~  346 (420)
                      +...+....+..+.......+.......+..|+++|+++++..+....+|..++|.+.+.+.+..
T Consensus        93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  157 (381)
T PRK03633         93 GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTEL  157 (381)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            22223333333232222234444456667888899999999999999999999999999877654

>TIGR00889 2A0110 nucleoside transporter

Probab=99.10  E-value=9e-10  Score=102.96  Aligned_cols=126  Identities=16%  Similarity=0.220  Sum_probs=103.9

Q ss_pred             chHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh------HHHHHhhccccccchhHHHHHHH
Q psy6665           6 NVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY------TQLIMTGQIEKSLIPVFCILFYV   78 (420)
Q Consensus         6 ~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------~~~~~~~r~~~~~~~~~~~~~l~   78 (420)
                      +......++..++.+++.++ |+++||+|||+++..+.++.+++..+....      .+.+++.+            ++.
T Consensus       251 ~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~------------~l~  318 (418)
T TIGR00889       251 KNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSM------------IVY  318 (418)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHH------------HHH
Confidence            45567777888888888999 999999999999999999988887666552      23456677            999


Q ss_pred             HHHhhcccchhhhhhhhhccCccchhhhHhHHH-HHHHHHHHHHHHHhhhh----------hhHHHHHhHhhhcccc
Q psy6665          79 AISVIAMGPSPAIVYITEVARPDLRGALICIGP-SITSLGMVIVYALGAVL----------HWRTVAWLSLAYILIP  144 (420)
Q Consensus        79 G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~-~~~~lG~~~~~~~~~~~----------~wr~~f~~~~~~~~~~  144 (420)
                      |++.+ ...+....++.|++|+++|+++.++.+ ...++|..++|.+++.+          ||+..|++.+++.++.
T Consensus       319 g~~~~-~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~  394 (418)
T TIGR00889       319 GCAFD-FFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAIL  394 (418)
T ss_pred             HHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHH
Confidence            99998 777767889999999999999999997 67888999999888765          3899988887776655

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.08  E-value=4.4e-10  Score=105.45  Aligned_cols=126  Identities=17%  Similarity=0.135  Sum_probs=103.1

Q ss_pred             chHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHHHHHHh
Q psy6665           6 NVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFYVAISV   82 (420)
Q Consensus         6 ~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l~G~~~   82 (420)
                      .......++..++..++.++ |+++||+|||+.+..+.++.+++.++.++.  .+.+...+            ++.|++.
T Consensus       262 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~------------~l~g~~~  329 (420)
T PRK09528        262 RVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILK------------LLHAFEV  329 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHH------------HHHHHHH
Confidence            34556667777888899999 999999999999999999988888887766  66777888            9999988


Q ss_pred             hcccchhhhhhhhhccCccchhhhHhH-HHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccc
Q psy6665          83 IAMGPSPAIVYITEVARPDLRGALICI-GPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIP  144 (420)
Q Consensus        83 ~~~~~~~~~~~i~e~~~~~~r~~~~~~-~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~  144 (420)
                      + ...+....++.|.+|++.|++..+. .+....+|..+++.+.+.+    ||+..|.+.+++.++.
T Consensus       330 ~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~  395 (420)
T PRK09528        330 P-FLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLF  395 (420)
T ss_pred             H-HHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence            8 6666577899999999999887665 5677788888888887776    8999999877776554

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.08  E-value=3.4e-08  Score=89.06  Aligned_cols=310  Identities=14%  Similarity=0.118  Sum_probs=175.4

Q ss_pred             HHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHHHHHHhhcccc
Q psy6665          11 TVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFYVAISVIAMGP   87 (420)
Q Consensus        11 ~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l~G~~~~~~~~   87 (420)
                      +.-+..-.+++..++ ..+.|..|-|++++++.+...+...+..+.  ...+-+..            +..|++.+ .-.
T Consensus        46 i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q------------~~yg~~~a-~ev  112 (412)
T PF01770_consen   46 IYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQ------------FFYGLATA-AEV  112 (412)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHH------------HHHHHHHH-HHH
Confidence            334444556666777 999999999999999999888888777777  77888888            99999998 654


Q ss_pred             hhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh------hhHHHHHhHhhhcccc--------ccce-eeec
Q psy6665          88 SPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL------HWRTVAWLSLAYILIP--------SPVW-LLNK  152 (420)
Q Consensus        88 ~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~------~wr~~f~~~~~~~~~~--------~~~~-l~~~  152 (420)
                      . -++|+--..|+++-.++.+...++.-+|..++.+++..+      +.+...++......+.        .|.+ ...+
T Consensus       113 a-y~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~  191 (412)
T PF01770_consen  113 A-YYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRSLFFH  191 (412)
T ss_pred             H-HHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCccccee
Confidence            4 789999999999999999999999999999999998876      3444443333221111        1111 1111


Q ss_pred             CcHHHHHHHHHHHhcchh-hhhhhHHHHhhhccchhhhhhhhHHHHHh-hccccchHHHHHHHHHHHHHhcchhhHHHhH
Q psy6665         153 GRANQALKSLKYLARNYK-EVKNKEQELKKMNSTKENQSLSARLIKMV-TMATGIKPLLVITVLFALQQLAGIYITIFYA  230 (420)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (420)
                      ++.++... ..+...++. +.++...+.+.++.......+...+.+++ .+..+..+.++.-.++.....++++.+.+|.
T Consensus       192 r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYv  270 (412)
T PF01770_consen  192 RKPPAEQD-ANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYV  270 (412)
T ss_pred             ccCccccc-cccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHH
Confidence            11111000 000000000 00000000000000011111222223333 3334445555556666677777788888898


Q ss_pred             HHHHHhh---CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc--------------hhHHHHHHHHHH
Q psy6665         231 VQFLEDM---GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE--------------KSLIPVFCILFY  292 (420)
Q Consensus       231 ~~~~~~~---g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~--------------~~~~~~~~~~~~  292 (420)
                      ....++.   +- ..--+..-....+.+.++.+..|++..++.+...+.++...              +-+.......++
T Consensus       271 Q~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif  350 (412)
T PF01770_consen  271 QSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIF  350 (412)
T ss_pred             HHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            8888776   22 33345566666777888888889886666554333322221              112222222222


Q ss_pred             HHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHH
Q psy6665         293 VAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFAL  336 (420)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~  336 (420)
                      ...+.+ ..++...-++.....+.-+..+|++.+...+...+-.
T Consensus       351 ~~~y~f-liTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQtilT  393 (412)
T PF01770_consen  351 RSLYMF-LITIASFQIAKNLSEERYALVFGINTFVALVLQTILT  393 (412)
T ss_pred             HHHHHH-HHHHHHHHHHHhccccceeeeeeeHHHHHHHHHHheE
Confidence            222222 2333344444444555567777777776666555443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.08  E-value=5.6e-09  Score=99.72  Aligned_cols=148  Identities=13%  Similarity=0.089  Sum_probs=99.2

Q ss_pred             HHHHHhcchhhHHHhHHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhc-cCchhhHhhhccc----------h
Q psy6665         215 FALQQLAGIYITIFYAVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRT-YGRRSLTMFSQIE----------K  281 (420)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~----------~  281 (420)
                      ..+....+++.+..+.+.|+++. |+ ..++...............+++|+++|| +|||+.+..+..+          .
T Consensus        29 ~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~  108 (500)
T PRK09584         29 IELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWS  108 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh
Confidence            33344445677888899998654 77 5555555555544445556789999999 5999988877665          1


Q ss_pred             -hHHHHHHHH-HHHHHHhhchhhHHHHHhcccCChhh--hhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHH
Q psy6665         282 -SLIPVFCIL-FYVAISVIGMLSIPWTMTAEIFPLEI--RGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFA  357 (420)
Q Consensus       282 -~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~--r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~  357 (420)
                       +....+... ...+.......+...++..|.+|++.  |..+.++.+...++|..++|.+.|++.++.| ++..|.+.+
T Consensus       109 ~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g-~~~~F~i~~  187 (500)
T PRK09584        109 GHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYG-WSVAFALSV  187 (500)
T ss_pred             cccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhC-HHHHHHHHH
Confidence             111111121 22222222234555688899998543  4567888899999999999999999999998 888888766


Q ss_pred             HHHHHH
Q psy6665         358 LISVIS  363 (420)
Q Consensus       358 ~~~~~~  363 (420)
                      +...++
T Consensus       188 i~~~i~  193 (500)
T PRK09584        188 VGMLIT  193 (500)
T ss_pred             HHHHHH
Confidence            544443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.06  E-value=7.9e-09  Score=96.26  Aligned_cols=142  Identities=6%  Similarity=0.004  Sum_probs=102.5

Q ss_pred             hhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc--------------hhHHHHHH
Q psy6665         224 YITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE--------------KSLIPVFC  288 (420)
Q Consensus       224 ~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~--------------~~~~~~~~  288 (420)
                      .......|.+.++.|. ..+.+.......++..++++..|++.||+|||+.+..+..+              .++..+..
T Consensus        20 ~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~   99 (410)
T TIGR00885        20 DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLV   99 (410)
T ss_pred             HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence            3344666777776688 78889999999999999999999999999999998887766              01211222


Q ss_pred             HHHHHHHHhhc-hhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHh----------------------
Q psy6665         289 ILFYVAISVIG-MLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDS----------------------  345 (420)
Q Consensus       289 ~~~~~~~~~~~-~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~----------------------  345 (420)
                      . .+..+.+.+ ..+...+++.+..|+++|++..++.+....+|..++|.+.+.+...                      
T Consensus       100 ~-~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  178 (410)
T TIGR00885       100 G-LFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIK  178 (410)
T ss_pred             H-HHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHH
Confidence            2 222222222 2344457788888999999999999999999999999998877532                      


Q ss_pred             ----cCcchHHHHHHHHHHHHHHHHh
Q psy6665         346 ----VGGSAMVQWFFALISVISIVYV  367 (420)
Q Consensus       346 ----~g~~~~~~~~~~~~~~~~~~~~  367 (420)
                          .+ ++.++.+.+++.++..++.
T Consensus       179 ~~~~~~-w~~~fl~~a~~~~~~~~~~  203 (410)
T TIGR00885       179 HSDLAS-VQTPYMIIGAVVLAVALLI  203 (410)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence                23 5667777777666554443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.03  E-value=1.8e-08  Score=94.24  Aligned_cols=170  Identities=12%  Similarity=0.057  Sum_probs=116.6

Q ss_pred             hHHHHHHHHHHHHHhcchhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhh----ccCchhhHhhhccc
Q psy6665         206 KPLLVITVLFALQQLAGIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLR----TYGRRSLTMFSQIE  280 (420)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~~~~~~~~~~~  280 (420)
                      ++++..+......++. ......+.+.|+++.|. +...+.......+.+++..++.|.++|    |+|||+.++.....
T Consensus         4 ~~li~~~~~~~Giq~~-~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~   82 (477)
T TIGR01301         4 RKLLRVASVAAGVQFG-WALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAA   82 (477)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHH
Confidence            3445555555555654 55566777778888888 788888888999999999999999999    59999988765333


Q ss_pred             ------------hhH--------------H--HHHHHHHHHHHHhh-chhhHHHHHhcccCChhhh--hhhHHHHHHHHH
Q psy6665         281 ------------KSL--------------I--PVFCILFYVAISVI-GMLSIPWTMTAEIFPLEIR--GIAQGLTFCLAH  329 (420)
Q Consensus       281 ------------~~~--------------~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r--~~~~g~~~~~~~  329 (420)
                                  ...              .  ......+...-+.. ...+...+++.|.+|+++|  +.+.++.+....
T Consensus        83 ~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~  162 (477)
T TIGR01301        83 LVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMA  162 (477)
T ss_pred             HHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHH
Confidence                        000              0  01111111111111 1233445899999998865  679999999999


Q ss_pred             HHHHHHHHHhHHH--HHhcC------------cchHHHHHHHHHHHHHHHHhhhccccCCC
Q psy6665         330 ILMFFALQYYPWF--KDSVG------------GSAMVQWFFALISVISIVYVYIFLPETHG  376 (420)
Q Consensus       330 ~~~~~~~~~~g~l--~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (420)
                      +|+.+++.+.+..  .+..+            +....|.+.+++.++..++..+..+|...
T Consensus       163 lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~  223 (477)
T TIGR01301       163 IGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPL  223 (477)
T ss_pred             HHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCC
Confidence            9999999988764  22221            25667888888888888888888888643

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.03  E-value=1.4e-08  Score=94.45  Aligned_cols=152  Identities=12%  Similarity=0.047  Sum_probs=96.8

Q ss_pred             chhhHHHhHHHHHHh-hCC-cchHHHHHHHHHH-HHHHHHHHHHHhhhccCchhhHh-hhccc-----------hhHHHH
Q psy6665         222 GIYITIFYAVQFLED-MGS-RMNVYLATVLVGV-VRMVFGLLTSQLLRTYGRRSLTM-FSQIE-----------KSLIPV  286 (420)
Q Consensus       222 ~~~~~~~~~~~~~~~-~g~-~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g~~~~~~-~~~~~-----------~~~~~~  286 (420)
                      +........|.++.+ .|. ..+.+.......+ ..+.+.+.+++ .||+|||+.++ .+...           .+...+
T Consensus        30 ~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l  108 (393)
T PRK15011         30 AGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVL  108 (393)
T ss_pred             HHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            345566677777655 487 6677776555545 44455555566 99999987644 33222           122222


Q ss_pred             HHHHHHHHHHhhchhhHHHHHhcccCChhhh--hhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHH
Q psy6665         287 FCILFYVAISVIGMLSIPWTMTAEIFPLEIR--GIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISI  364 (420)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r--~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  364 (420)
                      ........+......|....+..|..+++.|  +...++.+....+|..++|.+.+.+.++.| ++..|++.++.+++..
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g-w~~~f~~~~~~~~~~~  187 (393)
T PRK15011        109 LFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFS-FTVMYLSAAVAFIVCG  187 (393)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcC-hHHHHHHHHHHHHHHH
Confidence            2222222223333455555666676655444  334577888889999999999999999999 8888888888777777


Q ss_pred             HHhhhccccCC
Q psy6665         365 VYVYIFLPETH  375 (420)
Q Consensus       365 ~~~~~~~~~~~  375 (420)
                      +..++..||.+
T Consensus       188 ~~~~~~~~~~~  198 (393)
T PRK15011        188 VMVWLFLPSMR  198 (393)
T ss_pred             HHHHhhcCccC
Confidence            76666677654

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.02  E-value=4.7e-09  Score=93.23  Aligned_cols=164  Identities=16%  Similarity=0.122  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHHHhcchhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc------
Q psy6665         208 LLVITVLFALQQLAGIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE------  280 (420)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~------  280 (420)
                      .++.....+...++.-+.+....+.+-++.|+ +.|.+++.....+.+.+.++..|++.||+|.|+....+.++      
T Consensus        15 ~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~   94 (417)
T COG2223          15 NLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCL   94 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHH
Confidence            33334344444333334444455555566688 89999999999999999999999999999999888777766      


Q ss_pred             --------hhHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCc--ch
Q psy6665         281 --------KSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGG--SA  350 (420)
Q Consensus       281 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~--~~  350 (420)
                              .+...++.+.++.+ ...+...+...++++.+|++++|.++|+.. .+++|..+..++.+.+....|.  ++
T Consensus        95 ~~~~a~~~~~~~~ll~~gll~G-~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~  172 (417)
T COG2223          95 GLAFAVTYPSTWQLLVIGLLLG-LAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWR  172 (417)
T ss_pred             HHHHHccCCchHHHHHHHHHHh-cccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHH
Confidence                    12223333333333 333445566789999999999999999999 9999999999999998888873  56


Q ss_pred             HHHHHHHHHHHHHHHHhhhcccc
Q psy6665         351 MVQWFFALISVISIVYVYIFLPE  373 (420)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~  373 (420)
                      ....++....++..+..++...+
T Consensus       173 ~~~~i~~~~l~v~~v~~~~~~~d  195 (417)
T COG2223         173 NVAGIYVVALAIAAVLAWLGMND  195 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCC
Confidence            67777777777777777666544

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.02  E-value=2e-08  Score=94.61  Aligned_cols=147  Identities=14%  Similarity=0.099  Sum_probs=93.5

Q ss_pred             HHHHhcchhhHHHhHHHHHHhhC---C-cch---HHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc--------
Q psy6665         216 ALQQLAGIYITIFYAVQFLEDMG---S-RMN---VYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE--------  280 (420)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~g---~-~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~--------  280 (420)
                      ..........+....|.+.++.+   . ..+   .........++..+++++.|+++||+|||+.+..+...        
T Consensus        31 ~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~  110 (432)
T PRK10406         31 NLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVI  110 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence            33333344555555565555542   2 222   22334445566669999999999999999998877766        


Q ss_pred             ---hhHH--------HHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHH-----
Q psy6665         281 ---KSLI--------PVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKD-----  344 (420)
Q Consensus       281 ---~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~-----  344 (420)
                         .+..        .+...-+..+....+..+...+++.|.+|+++|+...++.......|..+++.+...+..     
T Consensus       111 ~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~  190 (432)
T PRK10406        111 ACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDA  190 (432)
T ss_pred             hhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence               1111        122222233333334467778999999999999999998887777777777766544432     


Q ss_pred             ---hcCcchHHHHHHHHHHHHH
Q psy6665         345 ---SVGGSAMVQWFFALISVIS  363 (420)
Q Consensus       345 ---~~g~~~~~~~~~~~~~~~~  363 (420)
                         ..| |+..|.+.++..++.
T Consensus       191 ~~~~~g-Wr~~F~i~~~~~ll~  211 (432)
T PRK10406        191 ELREWG-WRIPFALGAVLAVVA  211 (432)
T ss_pred             HHhccc-hHHHHHHHHHHHHHH
Confidence               456 888887766655544

>TIGR00898 2A0119 cation transport protein

Probab=99.01  E-value=7.7e-09  Score=99.59  Aligned_cols=142  Identities=14%  Similarity=0.202  Sum_probs=103.2

Q ss_pred             hHHHHHHhhCC----cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHHHH
Q psy6665         229 YAVQFLEDMGS----RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILFYV  293 (420)
Q Consensus       229 ~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~  293 (420)
                      +.|.+.++.++    +.+.+...+...++.+++.++.|+++||+|||+.+..+.++           .+...+....++.
T Consensus       111 ~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~  190 (505)
T TIGR00898       111 FSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLV  190 (505)
T ss_pred             ccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            34555555455    24567888889999999999999999999999998877665           2333333344444


Q ss_pred             HHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhcccc
Q psy6665         294 AISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFLPE  373 (420)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (420)
                      +....+..+...+++.|.+|++.|+.+.++......+|..++|.+...+.+    ++..+++.++..++..+.. +++||
T Consensus       191 G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~----wr~~~~~~~i~~~~~~~~~-~~~~e  265 (505)
T TIGR00898       191 GMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD----WRWLQLAVSLPTFLFFLLS-WFVPE  265 (505)
T ss_pred             HhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHH-HhcCC
Confidence            444444477778999999999999999999988888888888887655443    5677777777666665554 56777


Q ss_pred             CC
Q psy6665         374 TH  375 (420)
Q Consensus       374 ~~  375 (420)
                      +.
T Consensus       266 sp  267 (505)
T TIGR00898       266 SP  267 (505)
T ss_pred             Ch
Confidence            53

>KOG0569|consensus

Probab=99.00  E-value=1.4e-08  Score=93.89  Aligned_cols=132  Identities=17%  Similarity=0.131  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc--------------hhHHHHHHHHHHHHHHhhchhhHHHHHhc
Q psy6665         244 YLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE--------------KSLIPVFCILFYVAISVIGMLSIPWTMTA  309 (420)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (420)
                      +.......+++++|+++.++++||+|||..+.++.++              .....++..-+..+............++.
T Consensus        63 S~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~  142 (485)
T KOG0569|consen   63 SLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLT  142 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            3556777899999999999999999999887777665              22222222223333222222345558899


Q ss_pred             ccCChhhhhhhHHHHHHHHHHHHHHHHHHh-HHHHHhcCcchHHHHHHHHHHHHHHHHhhhccccCCC
Q psy6665         310 EIFPLEIRGIAQGLTFCLAHILMFFALQYY-PWFKDSVGGSAMVQWFFALISVISIVYVYIFLPETHG  376 (420)
Q Consensus       310 ~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~-g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (420)
                      |+.|.+.||....+......+|..++..+. +.+..... .|.....+..+..+..++...+.||+.+
T Consensus       143 E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~-~W~~l~~~~~i~~~~~l~~l~~~PESPk  209 (485)
T KOG0569|consen  143 EISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTED-LWPYLLAFPLIPALLQLALLPFLPESPK  209 (485)
T ss_pred             hcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCc-chHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence            999999999999999999888888885544 33333322 2223333333434444445578898754

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.99  E-value=9.2e-09  Score=90.16  Aligned_cols=226  Identities=12%  Similarity=0.049  Sum_probs=133.6

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh-HHHHHhhccccccchhHHHHHHHH
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY-TQLIMTGQIEKSLIPVFCILFYVA   79 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~l~G   79 (420)
                      |.+..++...+..++...++..++ |.++||+|||+.-+.-.++.+++++..-.. ++.++++|            ++.|
T Consensus        65 g~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~~~~~L~~GR------------vlgG  132 (354)
T PF05631_consen   65 GFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSSNYPVLLLGR------------VLGG  132 (354)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccccHHHHHHH------------HHHH
Confidence            556677888888888888888888 999999999999999999999999877777 99999999            9999


Q ss_pred             HHhhcccchhhhh-hhhhcc----CccchhhhHhHHH-HHHHHHHHHHHHHhhhh----h--hHHHHHhHhhhccccccc
Q psy6665          80 ISVIAMGPSPAIV-YITEVA----RPDLRGALICIGP-SITSLGMVIVYALGAVL----H--WRTVAWLSLAYILIPSPV  147 (420)
Q Consensus        80 ~~~~~~~~~~~~~-~i~e~~----~~~~r~~~~~~~~-~~~~lG~~~~~~~~~~~----~--wr~~f~~~~~~~~~~~~~  147 (420)
                      ++.. ....+--+ ++.|+-    |++..+...+... ..+++-.+.+..++..+    +  -..+|....+..++.  .
T Consensus       133 iaTS-LLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~--~  209 (354)
T PF05631_consen  133 IATS-LLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVA--A  209 (354)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHH--H
Confidence            9999 55553443 455553    3333333333333 22233334444444443    2  255676666555544  0


Q ss_pred             eeeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHH
Q psy6665         148 WLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITI  227 (420)
Q Consensus       148 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (420)
                      .++.+.-           .++..+.            .++.+...+.++.++ .-..-++.+.......++....+..+.
T Consensus       210 ~~I~~~W-----------~ENyg~~------------~~~~~~~~~~~~a~~-~i~~d~ril~LG~~qslFE~smy~FVf  265 (354)
T PF05631_consen  210 VLILKTW-----------PENYGDT------------SSSSSLSGSFREAWR-AILSDPRILLLGLIQSLFEGSMYLFVF  265 (354)
T ss_pred             HHHHhcc-----------cccCCCc------------ccccchHHHHHHHHH-HHHcCchhHHHHHHHHHHHHHHHHhee
Confidence            0000000           0000000            000001111222221 000113445556666677766566667


Q ss_pred             HhHHHHHHhhCCcchHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy6665         228 FYAVQFLEDMGSRMNVYLATVLVGVVRMVFGLLTSQLLRT  267 (420)
Q Consensus       228 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~  267 (420)
                      .|.|.+-.+ +-...-+.++..+.+..++|+.+...+..+
T Consensus       266 lWtPaL~~~-~~~~P~GlIFssFM~a~MlGS~lf~~l~s~  304 (354)
T PF05631_consen  266 LWTPALDPD-DEELPLGLIFSSFMVAMMLGSSLFSRLLSK  304 (354)
T ss_pred             eeeceecCC-CCCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            788887632 223346778888888899999888665543

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.98  E-value=5.1e-08  Score=89.27  Aligned_cols=164  Identities=9%  Similarity=0.033  Sum_probs=112.6

Q ss_pred             hHHHHHHHHHHHHHhcchhhHHHhHHHHHHhhCC-cch-HHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc---
Q psy6665         206 KPLLVITVLFALQQLAGIYITIFYAVQFLEDMGS-RMN-VYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE---  280 (420)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~---  280 (420)
                      +..+..|...++..+  =....+..|.+.++.|+ ..+ .+.+...+..+..+..+.+|+++||+|.|+++..+.+.   
T Consensus        27 ~~~~~lC~fGF~~e~--R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl  104 (511)
T TIGR00806        27 VLVLYLCFYGFMAQF--RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVC  104 (511)
T ss_pred             HHHHHHHHHHHHHHh--hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            334444444444443  33455566776677799 777 88999999999999999999999999999998888776   


Q ss_pred             --------hhHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHH
Q psy6665         281 --------KSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMV  352 (420)
Q Consensus       281 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~  352 (420)
                              .+...+.+.-++.+....+.. ....++...+|+++|+++.|+.+....+|.++++++.+. ....| +...
T Consensus       105 ~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~g-Wr~y  181 (511)
T TIGR00806       105 VWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLG-WISY  181 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcC-chhH
Confidence                    223333333333333333334 667899999999999999999999999999999999999 55566 4433


Q ss_pred             HH--HHHHHHHHHHHHhhhccccC
Q psy6665         353 QW--FFALISVISIVYVYIFLPET  374 (420)
Q Consensus       353 ~~--~~~~~~~~~~~~~~~~~~~~  374 (420)
                      ..  .+...+....++..+++|..
T Consensus       182 ~~Ln~Isl~s~~~a~~~a~~LP~~  205 (511)
T TIGR00806       182 STLNIISLVFMTFSVFLALFLKRP  205 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCC
Confidence            22  22333333333334566643

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.98  E-value=2.5e-08  Score=94.82  Aligned_cols=137  Identities=19%  Similarity=0.171  Sum_probs=100.8

Q ss_pred             HHHHHHhh-CCcchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc----------------hhHHHHHHHHHH
Q psy6665         230 AVQFLEDM-GSRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE----------------KSLIPVFCILFY  292 (420)
Q Consensus       230 ~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~----------------~~~~~~~~~~~~  292 (420)
                      .+.+..+. +-+...+.......+-.++.++++|.++||++||++++.+-.+                .+.+.++.+.+.
T Consensus        33 ~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl  112 (524)
T PF05977_consen   33 LAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFL  112 (524)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence            33444343 3356667777777888889999999999999999998877654                122223333334


Q ss_pred             HHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHh
Q psy6665         293 VAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYV  367 (420)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  367 (420)
                      .+.......|...+.+.|++|+++...++++.+...++...+||.+.|.+....| ....|.+-++..++..+..
T Consensus       113 ~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G-~~~~f~inalsfl~~i~~l  186 (524)
T PF05977_consen  113 LGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFG-AAAAFLINALSFLISILAL  186 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            4444444467878999999999999999999999999999999999999999988 7777776665555544433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00901 2A0125 AmpG-related permease

Probab=98.97  E-value=2.4e-08  Score=91.59  Aligned_cols=149  Identities=14%  Similarity=0.076  Sum_probs=99.4

Q ss_pred             hHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhcc-----CchhhHh-hhccc-----------h---hH
Q psy6665         225 ITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTY-----GRRSLTM-FSQIE-----------K---SL  283 (420)
Q Consensus       225 ~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~~~~-~~~~~-----------~---~~  283 (420)
                      ....-.|.+.++.|+ ..+.+..... .+...+ .++.|+++||+     |||+.++ .+...           .   +.
T Consensus         6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l   83 (356)
T TIGR00901         6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDL   83 (356)
T ss_pred             hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhH
Confidence            345567888888888 6666666533 343443 88999999998     7888643 32222           1   11


Q ss_pred             HHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCc-------chHHHHHH
Q psy6665         284 IPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGG-------SAMVQWFF  356 (420)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~-------~~~~~~~~  356 (420)
                      ..+....+..........+...+++.|.+|+++|+.+.++......+|..+++.+.+.+.+..|.       ++..+++.
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~  163 (356)
T TIGR00901        84 PLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWT  163 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHH
Confidence            11222222222223333455668899999999999999999999999999999999988877662       66778777


Q ss_pred             HHHHHHHHHHhhhccccCC
Q psy6665         357 ALISVISIVYVYIFLPETH  375 (420)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~  375 (420)
                      ++..++..+..++..||+.
T Consensus       164 ai~~l~~~~~~~~~~~e~~  182 (356)
T TIGR00901       164 ALLILPGLLVTLFLAKEPQ  182 (356)
T ss_pred             HHHHHHHHHHHHHhccCCC
Confidence            7766666555544456643

>PTZ00207 hypothetical protein; Provisional

Probab=98.96  E-value=5.7e-08  Score=92.86  Aligned_cols=148  Identities=11%  Similarity=0.015  Sum_probs=96.1

Q ss_pred             chhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc----------h-------hH
Q psy6665         222 GIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE----------K-------SL  283 (420)
Q Consensus       222 ~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~----------~-------~~  283 (420)
                      ..+.+..+.+.+.++.|+ ..+.+....... ......++.|++.||+|+|+++.++.++          .       +.
T Consensus        42 ~~y~fsv~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~  120 (591)
T PTZ00207         42 FMYAFNLISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSV  120 (591)
T ss_pred             HHHHHHHHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcH
Confidence            356677788888777788 666666555433 3334566789999999999999888776          1       11


Q ss_pred             HHHHHHHHHHHHHhhc-hhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHH
Q psy6665         284 IPVFCILFYVAISVIG-MLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVI  362 (420)
Q Consensus       284 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  362 (420)
                      ..+.+... ..+.+.+ ..+.....+.+.+| ++||.+.|+......+|+++.+.+...+.. .+ +...+++.+++.++
T Consensus       121 ~~l~l~r~-l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~-~~~~fl~l~vl~~v  196 (591)
T PTZ00207        121 VRLSVYNG-LMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DN-TSAYFFFLMSFALV  196 (591)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-HHHHHHHHHHHHHH
Confidence            11111111 2222222 23444566778887 679999999999999999864444443333 23 56777777887777


Q ss_pred             HHHHhhhccccC
Q psy6665         363 SIVYVYIFLPET  374 (420)
Q Consensus       363 ~~~~~~~~~~~~  374 (420)
                      .+++.+.+++..
T Consensus       197 v~ll~~~~vr~p  208 (591)
T PTZ00207        197 VGILAIVFMRLP  208 (591)
T ss_pred             HHHHHHhheeCC
Confidence            777766666544

>PRK15075 citrate-proton symporter; Provisional

Probab=98.96  E-value=2.5e-08  Score=93.97  Aligned_cols=148  Identities=12%  Similarity=0.016  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHhcchhhHHHhHHHHHHhhCC-cchHH-HHHH-----HHHHHHHHHHHHHHHhhhccCchhhHhhhccc
Q psy6665         208 LLVITVLFALQQLAGIYITIFYAVQFLEDMGS-RMNVY-LATV-----LVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE  280 (420)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~-~~~~-----~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~  280 (420)
                      .....++..+........+....|.+.++.+. +.+.. ....     ...+...++.++.|+++||+|||+.++.+..+
T Consensus        16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~   95 (434)
T PRK15075         16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSI   95 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHH
Confidence            34444555555555567788888888888766 43322 2211     11233357889999999999999998887765


Q ss_pred             -----------hhHHH--------HHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHH
Q psy6665         281 -----------KSLIP--------VFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPW  341 (420)
Q Consensus       281 -----------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~  341 (420)
                                 .+...        ++...++.+.......+....++.|.+|+++|+++.++.....+++..+++.+.+.
T Consensus        96 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~  175 (434)
T PRK15075         96 MASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYL  175 (434)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       12111        11222222222222345556899999999999999999999888888877777666


Q ss_pred             HH--------HhcCcchHHHHHH
Q psy6665         342 FK--------DSVGGSAMVQWFF  356 (420)
Q Consensus       342 l~--------~~~g~~~~~~~~~  356 (420)
                      +.        +..| |+..|++.
T Consensus       176 l~~~~~~~~~~~~g-Wr~~f~~~  197 (434)
T PRK15075        176 LNQWLSPAQMAEWG-WRIPFLIG  197 (434)
T ss_pred             HHHhCCHHHHhccc-hHHHHHHH
Confidence            53        4566 77777653

>KOG3764|consensus

Probab=98.96  E-value=1.3e-09  Score=95.58  Aligned_cols=137  Identities=12%  Similarity=0.139  Sum_probs=115.6

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHHHHHHHhhchhhHHHHHh
Q psy6665         240 RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILFYVAISVIGMLSIPWTMT  308 (420)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (420)
                      ..+.+..+....+.+++.+++.|.+.||+|+|..++.++..           +.+..++..-.+.+..+........+++
T Consensus       105 ~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglaml  184 (464)
T KOG3764|consen  105 NTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAML  184 (464)
T ss_pred             ccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHH
Confidence            67788999999999999999999999999999999888877           4445555555555555555556667999


Q ss_pred             cccCChhh-hhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhccccCCCC
Q psy6665         309 AEIFPLEI-RGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFLPETHGR  377 (420)
Q Consensus       309 ~~~~p~~~-r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (420)
                      ++.+|+++ |++++|+.-.+..+|..++|.+.|.+++..| +..+|.+.+.++++-..+.++.++.++.+
T Consensus       185 Ad~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G-k~aPFlVL~~v~Lld~~L~l~vi~p~~~~  253 (464)
T KOG3764|consen  185 ADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG-KSAPFLVLAIVLLLDGALQLLVIEPTEMD  253 (464)
T ss_pred             HHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC-CcCcHHHHHHHHHHHHHHHHheeCccccC
Confidence            99999776 6999999999999999999999999999999 99999999999999998887766654443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.96  E-value=1.6e-08  Score=94.25  Aligned_cols=154  Identities=8%  Similarity=0.099  Sum_probs=99.9

Q ss_pred             HHHHhcchhhHHHhHHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----hhHH----
Q psy6665         216 ALQQLAGIYITIFYAVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----KSLI----  284 (420)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----~~~~----  284 (420)
                      .+....+......+.|.++.+. |. +.+.+.......+...++.++.|+++||+|||+.+..+...     ....    
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~   90 (396)
T TIGR00882        11 FFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVF   90 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333334556667888888764 88 88889999999999999999999999999999998765443     0000    


Q ss_pred             -------HHHHHH---HHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHH
Q psy6665         285 -------PVFCIL---FYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQW  354 (420)
Q Consensus       285 -------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~  354 (420)
                             ......   +..........+....+..|..  +.++...|.......+|..++|.+.|.+.+ .+ ++..|+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~-~~~~f~  166 (396)
T TIGR00882        91 GPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-ID-PQIVFW  166 (396)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cC-chHHHH
Confidence                   000001   1111111112233334444432  233556788888889999999999988765 46 788888


Q ss_pred             HHHHHHHHHHHHhhhcccc
Q psy6665         355 FFALISVISIVYVYIFLPE  373 (420)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~  373 (420)
                      +.+++.++..++.+...++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~  185 (396)
T TIGR00882       167 LGSGFALILMLLLMFAKPK  185 (396)
T ss_pred             HHHHHHHHHHHHHHHhCCC
Confidence            8887777766655444443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.95  E-value=3.4e-08  Score=92.12  Aligned_cols=155  Identities=16%  Similarity=0.206  Sum_probs=109.2

Q ss_pred             HHHhcchhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhcc-----Cchh-hHhhhccc---------
Q psy6665         217 LQQLAGIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTY-----GRRS-LTMFSQIE---------  280 (420)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~-~~~~~~~~---------  280 (420)
                      +.+.........-+|.++++.|+ .++.+........  .+..++.|+++||+     |||| .+..+...         
T Consensus         9 ~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~   86 (402)
T PRK11902          9 FASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMA   86 (402)
T ss_pred             HHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHH
Confidence            34444566677888999999999 7777777555444  68899999999999     7765 44444333         


Q ss_pred             -h----hHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhc-CcchHHHH
Q psy6665         281 -K----SLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSV-GGSAMVQW  354 (420)
Q Consensus       281 -~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-g~~~~~~~  354 (420)
                       .    +...+....+....+.....+...+++.|.+|+++|+++.++......++..+++.+.+.+.+.. | ++..++
T Consensus        87 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~g-w~~~f~  165 (402)
T PRK11902         87 FCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLG-WGNTYL  165 (402)
T ss_pred             hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccC-HHHHHH
Confidence             1    12222222222233333345666799999999999999999999999999999999998888864 6 888888


Q ss_pred             HHHHHHHHHHHHhhhccccCC
Q psy6665         355 FFALISVISIVYVYIFLPETH  375 (420)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~  375 (420)
                      +.+++.++..+. .+..||++
T Consensus       166 i~a~~~l~~~l~-~~~~~e~~  185 (402)
T PRK11902        166 LMAGLMLAGALT-TLWAPEPE  185 (402)
T ss_pred             HHHHHHHHHHHH-HHhcCCCc
Confidence            888777665554 34556553

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.94  E-value=3.3e-08  Score=91.49  Aligned_cols=135  Identities=10%  Similarity=0.058  Sum_probs=97.6

Q ss_pred             chhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCch----hhHhhhccc---------hhHHHHH
Q psy6665         222 GIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRR----SLTMFSQIE---------KSLIPVF  287 (420)
Q Consensus       222 ~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~----~~~~~~~~~---------~~~~~~~  287 (420)
                      .......+.|.++++.|. ..+.+.......+...++.++.+.++||++|+    +.+..+..+         ++...++
T Consensus        19 ~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~   98 (382)
T TIGR00902        19 AYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAGAHNAWLLF   98 (382)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            345677788899998898 88889999999999999999999999999974    333222221         2222232


Q ss_pred             HHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHH
Q psy6665         288 CILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALI  359 (420)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~  359 (420)
                      ........+.....|...++..+.  +++|+..+|.......+|..++|.+.+.+.++.| ++..+.+...+
T Consensus        99 ~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g-~~~~f~~~~~~  167 (382)
T TIGR00902        99 IAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFD-EQNILAILTAG  167 (382)
T ss_pred             HHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcC-hhHHHHHHHHH
Confidence            222222333333456666665543  4678999999999999999999999999999999 88777766554

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.93  E-value=5.8e-08  Score=92.73  Aligned_cols=150  Identities=19%  Similarity=0.251  Sum_probs=103.3

Q ss_pred             chhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhcc-----Cchhh-Hhhhccc--------------
Q psy6665         222 GIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTY-----GRRSL-TMFSQIE--------------  280 (420)
Q Consensus       222 ~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~~-~~~~~~~--------------  280 (420)
                      .........|.++++.|. ..+.+.... .+.. .++.++.++++||+     |||+. +..+.+.              
T Consensus        27 ~~~~~~~~l~~~l~~~g~~~~~ig~~~~-~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~  104 (491)
T PRK11010         27 PLALTSGTLQAWMTVENIDLKTIGFFSL-VGQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPG  104 (491)
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHH-HHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCc
Confidence            455666678888888777 445555422 2222 26889999999999     98875 3333332              


Q ss_pred             hhHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHH-hcCcchHHHHHHHHH
Q psy6665         281 KSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKD-SVGGSAMVQWFFALI  359 (420)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~-~~g~~~~~~~~~~~~  359 (420)
                      .+...+....+....+.....+...++..|.+|+++|+++.++......+|..+++.+.+++.+ ..| |+..|++.+++
T Consensus       105 ~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~G-Wr~~f~i~a~l  183 (491)
T PRK11010        105 TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLG-WQGMYWLMAAL  183 (491)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-HHHHHHHHHHH
Confidence            1122222233333333334455666899999999999999999999999999999999999888 457 89999888887


Q ss_pred             HHHHHHHhhhccccCC
Q psy6665         360 SVISIVYVYIFLPETH  375 (420)
Q Consensus       360 ~~~~~~~~~~~~~~~~  375 (420)
                      .++..+..+ +.||+.
T Consensus       184 ~ll~~l~~~-~~~e~~  198 (491)
T PRK11010        184 LIPCIIATL-LAPEPT  198 (491)
T ss_pred             HHHHHHHHH-hcCCCc
Confidence            777655543 456653

>PRK09952 shikimate transporter; Provisional

Probab=98.93  E-value=7.6e-08  Score=90.77  Aligned_cols=112  Identities=13%  Similarity=0.059  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHH--------HHHHHHHHHHHHhhchhhHHHHHhcc
Q psy6665         250 VGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLI--------PVFCILFYVAISVIGMLSIPWTMTAE  310 (420)
Q Consensus       250 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (420)
                      ..++..+++++.|+++||+|||+.+..+..+           ++..        .++..-+..+....+..+....++.|
T Consensus        73 ~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e  152 (438)
T PRK09952         73 GFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVE  152 (438)
T ss_pred             HHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHH
Confidence            3455678889999999999999998887666           1211        12222233333333445666789999


Q ss_pred             cCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHH--------hcCcchHHHHHHHHHHHH
Q psy6665         311 IFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKD--------SVGGSAMVQWFFALISVI  362 (420)
Q Consensus       311 ~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~--------~~g~~~~~~~~~~~~~~~  362 (420)
                      .+|+++|+...+..+....+|..+++.+...+..        ..| |+..|.+.++..++
T Consensus       153 ~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~g-Wr~~f~~~~~~~l~  211 (438)
T PRK09952        153 SAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWG-WRIPFLFSIVLVLI  211 (438)
T ss_pred             hCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccC-hHHHHHHHHHHHHH
Confidence            9999999999999988888888888777666543        356 77788766655433

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.92  E-value=3.6e-08  Score=93.73  Aligned_cols=142  Identities=15%  Similarity=0.177  Sum_probs=99.4

Q ss_pred             HhHHHHHHhhCCcchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHHHHHHH
Q psy6665         228 FYAVQFLEDMGSRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILFYVAIS  296 (420)
Q Consensus       228 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~  296 (420)
                      .-++.+..+.|-..+..++.....+...++.++.|.++|.+|||..++.+.++           ++...++....+. +.
T Consensus        65 ~~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~-Gv  143 (599)
T PF06609_consen   65 SILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLY-GV  143 (599)
T ss_pred             HHHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHH-HH
Confidence            34566666766666677777888899999999999999999999998887776           2233333322222 23


Q ss_pred             hhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhcc
Q psy6665         297 VIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFL  371 (420)
Q Consensus       297 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  371 (420)
                      +.+........++|+.|.+.|..+.++.....-.....+|.+...+..+.+ |++.+++.++...++++..++++
T Consensus       144 gaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~-WRw~~~~~~i~~~i~~vl~~~fY  217 (599)
T PF06609_consen  144 GAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSG-WRWIFYIFIIWSGIALVLIFFFY  217 (599)
T ss_pred             hhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCC-cchHHHHHHHHHHHHHHHHHHHh
Confidence            344444555678999999999888777766554555567777666555555 99999888888777776655544

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK10133 L-fucose transporter; Provisional

Probab=98.91  E-value=9.7e-08  Score=89.83  Aligned_cols=121  Identities=8%  Similarity=0.006  Sum_probs=88.5

Q ss_pred             hhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc--------------hhHHHHH
Q psy6665         223 IYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE--------------KSLIPVF  287 (420)
Q Consensus       223 ~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~--------------~~~~~~~  287 (420)
                      ......+.|.+.++.|. +.+.+.......++..++.++.|++.||+|||+++..+..+              .++..+.
T Consensus        42 ~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll  121 (438)
T PRK10133         42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFL  121 (438)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence            45667778888666688 88889999999999999999999999999999998888766              1111122


Q ss_pred             HHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHH
Q psy6665         288 CILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFK  343 (420)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~  343 (420)
                      ...+..+.......+....++.|..|++.|....++.+....+|..++|.+.+.+.
T Consensus       122 ~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        122 VGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222222222234455577778777776667899999999999999998877654

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.91  E-value=4.3e-08  Score=103.79  Aligned_cols=131  Identities=17%  Similarity=0.137  Sum_probs=94.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhcc---c-----------hhHHHHHHHHHHHHHHhhchhhHHHHH
Q psy6665         242 NVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQI---E-----------KSLIPVFCILFYVAISVIGMLSIPWTM  307 (420)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~---~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (420)
                      ..++......+..++.++++|.++||++||+++.....   .           .++..+++..++.+.......|...++
T Consensus        53 ~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~  132 (1140)
T PRK06814         53 LVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSI  132 (1140)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHh
Confidence            34566667788889999999999999999987532111   1           223334444444444444567888899


Q ss_pred             hcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhccccC
Q psy6665         308 TAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFLPET  374 (420)
Q Consensus       308 ~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (420)
                      +.+.+|++.++.++|+.+....++..++|.+.|++.+..+ +...+ +..++..+..+++...++++
T Consensus       133 l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~  197 (1140)
T PRK06814        133 LPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGN-FVILV-ALLMGIAVLGWLASLFIPKT  197 (1140)
T ss_pred             hHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHH-HHHHHHHHHHHHHHhhCCCC
Confidence            9999999999999999999999999999999999999887 66666 44333333334444455544

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.90  E-value=3.6e-08  Score=91.32  Aligned_cols=147  Identities=11%  Similarity=0.085  Sum_probs=101.3

Q ss_pred             hhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCch----hhHhhhccc---------hhHHHHHH
Q psy6665         223 IYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRR----SLTMFSQIE---------KSLIPVFC  288 (420)
Q Consensus       223 ~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~----~~~~~~~~~---------~~~~~~~~  288 (420)
                      ......++|.++++.|. ..+.+...+...+...++.++.|++.||++|+    +.+......         ++.+.+..
T Consensus        20 ~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i   99 (382)
T PRK11128         20 YGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVAFWFGAHSFWLLFV   99 (382)
T ss_pred             HHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            45567788899988888 88899999999999999999999999999983    333222211         22222222


Q ss_pred             HHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhh
Q psy6665         289 ILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVY  368 (420)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  368 (420)
                      .............|...++..+.  .++|+.+.+.......+|..++|.+.+.+.++.| ++..+++.++..++..+. .
T Consensus       100 ~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g-~~~~f~~~~~~~~~~~~~-~  175 (382)
T PRK11128        100 AIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFG-EQAILWILTAGVASMLLG-Q  175 (382)
T ss_pred             HHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcC-hhHHHHHHHHHHHHHHHH-H
Confidence            22222332333455555665554  3557888999999999999999999999999999 888887766544444332 3


Q ss_pred             hcccc
Q psy6665         369 IFLPE  373 (420)
Q Consensus       369 ~~~~~  373 (420)
                      +..||
T Consensus       176 ~~~~~  180 (382)
T PRK11128        176 LLRPT  180 (382)
T ss_pred             HccCC
Confidence            33444

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.90  E-value=7.2e-07  Score=82.07  Aligned_cols=317  Identities=12%  Similarity=0.089  Sum_probs=158.8

Q ss_pred             HHHHHHHHHHHHHHhhcchhHHHHhhHHHHHHHHHHHHhHHHHHhhccc---cccchhHHHHHHHHHHhhc-ccc-hhhh
Q psy6665          17 VRMVFGLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSGYYTQLIMTGQIE---KSLIPVFCILFYVAISVIA-MGP-SPAI   91 (420)
Q Consensus        17 ~g~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~---~~~~~~~~~~~l~G~~~~~-~~~-~~~~   91 (420)
                      ...++++.+|.+.||..|.++.-.+.+..-++..+.+..+..++..+..   .++....++..+..+++-. ... ....
T Consensus        50 ~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~i  129 (432)
T PF06963_consen   50 SAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTI  129 (432)
T ss_pred             HHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            3334444449999999999999999888877776666552222222211   1222222222222222210 111 1122


Q ss_pred             hhhhhcc------CccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccc-ccceeeecCcHHHHHH
Q psy6665          92 VYITEVA------RPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIP-SPVWLLNKGRANQALK  160 (420)
Q Consensus        92 ~~i~e~~------~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~-~~~~l~~~~~~~~~~~  160 (420)
                      +.=.||.      +++.+.+..+.+.-.--+..+++|++.+.+    +.+....+.+...++. .+.++..++-++....
T Consensus       130 avERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~  209 (432)
T PF06963_consen  130 AVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPA  209 (432)
T ss_pred             eeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence            2233443      344455666666555566777777777665    5565555555555544 2222222111111110


Q ss_pred             HHHHHhcchhhhhhhHHHHhh--hccchh----hhhhhhHHHHHh-hccccchHHHHHHHHHHHHHhcchhhHHHhHHHH
Q psy6665         161 SLKYLARNYKEVKNKEQELKK--MNSTKE----NQSLSARLIKMV-TMATGIKPLLVITVLFALQQLAGIYITIFYAVQF  233 (420)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (420)
                          ++.+++..+....+.+.  ++..++    ++.++..+...+ ++..++.+.+...+...+.++. ...+...+..|
T Consensus       210 ----L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY~T-VLsf~~lmt~y  284 (432)
T PF06963_consen  210 ----LAVKKRSSESESSSDEESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFALALLYFT-VLSFGGLMTAY  284 (432)
T ss_pred             ----hcCCCCCccccccccccccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHHHH-HhcCcHHHHHH
Confidence                11111000000000000  000000    001111222211 1112223333333332222222 33345566777


Q ss_pred             HHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc----------------hh--HHHHHHHHHHHH
Q psy6665         234 LEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE----------------KS--LIPVFCILFYVA  294 (420)
Q Consensus       234 ~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~----------------~~--~~~~~~~~~~~~  294 (420)
                      +...|+ +...+..-....+.++.+..+..++.+|+|..+.-.++...                .+  ......+.....
T Consensus       285 l~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~  364 (432)
T PF06963_consen  285 LKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIA  364 (432)
T ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHH
Confidence            777799 77888888999999999999999999999988765555443                11  122111111111


Q ss_pred             HH---hhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHH
Q psy6665         295 IS---VIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQY  338 (420)
Q Consensus       295 ~~---~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~  338 (420)
                      ..   -.++-.....+..|..|+++||...|+-+..+++...+.-.+
T Consensus       365 ~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~  411 (432)
T PF06963_consen  365 LSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVL  411 (432)
T ss_pred             HHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            11   112222334677899999999999999999998877765433

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.89  E-value=1.3e-08  Score=94.51  Aligned_cols=128  Identities=15%  Similarity=0.130  Sum_probs=91.1

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHH--HHHHh----HHHHHhhccccccchhHHH
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMT--TSGYY----TQLIMTGQIEKSLIPVFCI   74 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~--~~~~~----~~~~~~~r~~~~~~~~~~~   74 (420)
                      |.+........+...++..++.++ |+++||+|||+.+..+..+..+..+  ...+.    .+.+....           
T Consensus       251 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  319 (394)
T TIGR00883       251 GLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLV-----------  319 (394)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH-----------
Confidence            344555666677778888999999 9999999999988765544443331  11111    33334444           


Q ss_pred             HHHHHHHhhcccchhhhhhhhhccCccchhhhHhH-HHHHHHHHHHHHHHHhhhh----h-hHHHHHhHhhhcc
Q psy6665          75 LFYVAISVIAMGPSPAIVYITEVARPDLRGALICI-GPSITSLGMVIVYALGAVL----H-WRTVAWLSLAYIL  142 (420)
Q Consensus        75 ~~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~-~~~~~~lG~~~~~~~~~~~----~-wr~~f~~~~~~~~  142 (420)
                       ++.|++.+ ...+...+++.|.+|+++|+++.++ .+.+..+|..++|.+++.+    + |+..++......+
T Consensus       320 -~~~g~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l  391 (394)
T TIGR00883       320 -LGLALIGG-MYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL  391 (394)
T ss_pred             -HHHHHHHH-HHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence             78888887 5666689999999999999999998 4556667888888887765    5 8887777665543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG0255|consensus

Probab=98.86  E-value=4.2e-08  Score=94.81  Aligned_cols=131  Identities=18%  Similarity=0.213  Sum_probs=106.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHHHHHHHhhchhhHHHHHh
Q psy6665         240 RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILFYVAISVIGMLSIPWTMT  308 (420)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (420)
                      ........+++.++.++|+++.|+++||+|||++++++.++           .++....+.-++.+++..+...+.+.+.
T Consensus       117 ~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~  196 (521)
T KOG0255|consen  117 STLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLV  196 (521)
T ss_pred             HhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhh
Confidence            45566778888999999999999999999999999988887           4555566666677777777777888999


Q ss_pred             cccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhccccCC
Q psy6665         309 AEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFLPETH  375 (420)
Q Consensus       309 ~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (420)
                      .|++++++|+.+..+ ......++.++|...+++.+  + |++.+++.....++..+. +++.+|.+
T Consensus       197 ~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~-Wr~~~~~~~~~~~~~~~~-~~l~~Es~  258 (521)
T KOG0255|consen  197 AEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--D-WRWLFWIISIPSGLFLLL-WFLPPESP  258 (521)
T ss_pred             eeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--h-HHHHHHHHHHHHHHHHHH-HHccCcCh
Confidence            999999999999999 88888999999999998887  4 778888777777766665 45555653

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.86  E-value=7.1e-08  Score=102.45  Aligned_cols=103  Identities=10%  Similarity=0.136  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc--------------hhHHHHHHHHHHHHHHhhchhhHHHHHh
Q psy6665         243 VYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE--------------KSLIPVFCILFYVAISVIGMLSIPWTMT  308 (420)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (420)
                      .++..+...+..+++++++|+++||+|||+++..+.++              .+...+++..++.+.......+...+++
T Consensus        49 ~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i  128 (1146)
T PRK08633         49 TAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGII  128 (1146)
T ss_pred             HHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhh
Confidence            45667777888899999999999999999988766543              1222223333333333333466777899


Q ss_pred             cccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHh
Q psy6665         309 AEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDS  345 (420)
Q Consensus       309 ~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~  345 (420)
                      .|.+|++.|+.++|+......+|..++|.+.+++.+.
T Consensus       129 ~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        129 PELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             HHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999998876

>TIGR00896 CynX cyanate transporter

Probab=98.85  E-value=6.5e-08  Score=88.67  Aligned_cols=137  Identities=15%  Similarity=0.054  Sum_probs=96.4

Q ss_pred             hhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc----------hhHHHHHHHHHH
Q psy6665         224 YITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE----------KSLIPVFCILFY  292 (420)
Q Consensus       224 ~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~----------~~~~~~~~~~~~  292 (420)
                      .......|.+.++.|. ..+.+.......++..++.++.|+++||+|||+.+..+..+          .+...++...+.
T Consensus        17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   96 (355)
T TIGR00896        17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIRSAPGTALLFAGTAL   96 (355)
T ss_pred             ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            4455677888888888 88889999999999999999999999999999998877654          111111111122


Q ss_pred             HHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCc-chHHHHHHHHHHH
Q psy6665         293 VAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGG-SAMVQWFFALISV  361 (420)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~-~~~~~~~~~~~~~  361 (420)
                      .+.......+.......|.+| ++|+++.++.+....+|..+++.+.+.+.+..+. ++..+...+++.+
T Consensus        97 ~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~  165 (355)
T TIGR00896        97 IGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPAL  165 (355)
T ss_pred             HHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            222111223334456677776 5799999999999999999999999988877542 4555555554433

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.83  E-value=1.9e-08  Score=98.49  Aligned_cols=150  Identities=6%  Similarity=-0.028  Sum_probs=106.1

Q ss_pred             hhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc----------hh----------
Q psy6665         224 YITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE----------KS----------  282 (420)
Q Consensus       224 ~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~----------~~----------  282 (420)
                      .....-.+.+-++.++ ..+.+.+.+.+.++..++.++.+++.||.+||+.+..+.++          .+          
T Consensus        50 g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~  129 (633)
T TIGR00805        50 GLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYST  129 (633)
T ss_pred             HHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccc
Confidence            3344445555555588 78888899999999999999999999999999887766554          11          


Q ss_pred             ------------------------------------------HHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhh
Q psy6665         283 ------------------------------------------LIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIA  320 (420)
Q Consensus       283 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~  320 (420)
                                                                +..+++.-++.+.......+...+++.|.+|++.|+..
T Consensus       130 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~  209 (633)
T TIGR00805       130 TVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLY  209 (633)
T ss_pred             cccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHH
Confidence                                                      01111222233333333456667999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHhcC---------------------cchHHHHHHHHHHHHHHHHhhhccccC
Q psy6665         321 QGLTFCLAHILMFFALQYYPWFKDSVG---------------------GSAMVQWFFALISVISIVYVYIFLPET  374 (420)
Q Consensus       321 ~g~~~~~~~~~~~~~~~~~g~l~~~~g---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (420)
                      .|+.+....+|..+++.+.+.+.+...                     .|+..|++.+++.++..+.. ++.|++
T Consensus       210 ~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l-~~~p~~  283 (633)
T TIGR00805       210 IGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPF-FFFPKA  283 (633)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH-HhCccc
Confidence            999999999999999999998876531                     14455667676666665544 345543

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.79  E-value=3.6e-07  Score=84.90  Aligned_cols=161  Identities=16%  Similarity=0.031  Sum_probs=106.7

Q ss_pred             HHHHHHHHhcchhhHHHhHHHHHHhhCC-cchHHHH--HHHHHHHHHHHHHHH-HHhhhccCchhhHhhhccc-------
Q psy6665         212 TVLFALQQLAGIYITIFYAVQFLEDMGS-RMNVYLA--TVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSQIE-------  280 (420)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~--~~~~~~~~~~~~~~~-g~l~d~~g~~~~~~~~~~~-------  280 (420)
                      .....+.+...+.....+.|.++++.|. ..+.+..  .....+..++..++. ++..||+||||..++...+       
T Consensus         6 ~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~   85 (390)
T TIGR02718         6 LGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLA   85 (390)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHH
Confidence            3334455555677788899999999998 7777775  355577787778777 4578999988875322211       


Q ss_pred             -------h-h-HHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchH
Q psy6665         281 -------K-S-LIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAM  351 (420)
Q Consensus       281 -------~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~  351 (420)
                             . . .............+.....+....+..|..+++.++...+.......+|..+++...+++.++.| ++.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~g-w~~  164 (390)
T TIGR02718        86 SLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFG-QRP  164 (390)
T ss_pred             HHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHH
Confidence                   1 1 11111111111122222233444567777787877888888887778899999988889999999 899


Q ss_pred             HHHHHHHHHHHHHHHhhhcccc
Q psy6665         352 VQWFFALISVISIVYVYIFLPE  373 (420)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~  373 (420)
                      .|++.+++.++..+..++..++
T Consensus       165 ~f~~~a~l~~~~~~~~~~~~~~  186 (390)
T TIGR02718       165 AFLLVACVPLASLVCVLWLKDR  186 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCC
Confidence            9999988887766665444443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG2532|consensus

Probab=98.72  E-value=1.1e-07  Score=88.83  Aligned_cols=134  Identities=10%  Similarity=0.123  Sum_probs=110.5

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-------------hhHHHHHHHHHHHHHHhhchhhHHHH
Q psy6665         240 RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-------------KSLIPVFCILFYVAISVIGMLSIPWT  306 (420)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (420)
                      +.+.+.+......+.+++.+.+|++.||+|-|+++..+.++             .+...++..-++.+.......|....
T Consensus        72 ~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~  151 (466)
T KOG2532|consen   72 STEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGS  151 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhc
Confidence            56677888899999999999999999999999998888776             12223344444554444445677778


Q ss_pred             HhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHh-cCcchHHHHHHHHHHHHHHHHhhhccccC
Q psy6665         307 MTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDS-VGGSAMVQWFFALISVISIVYVYIFLPET  374 (420)
Q Consensus       307 ~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (420)
                      +..+-.|+++|++..++.....++|.+++-++.|.+.+. .| |...|++.++++++..++.+.+..+.
T Consensus       152 i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~G-W~sifY~~g~~g~i~~~~w~~~~~d~  219 (466)
T KOG2532|consen  152 ILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLG-WPSIFYVFGIVGLIWFILWFLFYSDS  219 (466)
T ss_pred             eeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC-CchHHHHHHHHHHHHHHHHHHHhcCC
Confidence            889999999999999999999999999999999999999 78 99999999999999888776666543

>KOG2533|consensus

Probab=98.70  E-value=1.2e-07  Score=89.00  Aligned_cols=140  Identities=14%  Similarity=0.095  Sum_probs=115.6

Q ss_pred             hhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHHHHHHHhhchhhH
Q psy6665         236 DMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILFYVAISVIGMLSI  303 (420)
Q Consensus       236 ~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~  303 (420)
                      +.++ ..+-+...+.+.++.+++.+.++.+.||++-.+.+....++           .+...++.+-++.+.+..+..|.
T Consensus        75 dl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~  154 (495)
T KOG2533|consen   75 DLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPG  154 (495)
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchH
Confidence            3355 66778889999999999999999999999976666555544           34555666677777777777888


Q ss_pred             HHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHH------hcCcchHHHHHHHHHHHHHHHHhhhccccCCC
Q psy6665         304 PWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKD------SVGGSAMVQWFFALISVISIVYVYIFLPETHG  376 (420)
Q Consensus       304 ~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (420)
                      ...++...+.+++|+.-+|+.+....+|++++.++...+.+      ..| |++.|++-+++.++..+++++++|+...
T Consensus       155 ~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~g-W~~~FiI~G~i~~~~gi~~f~~lp~~P~  232 (495)
T KOG2533|consen  155 VVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAG-WRWLFIIEGVITLVLGIVVFFFLPDNPS  232 (495)
T ss_pred             HHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCC-ceeehhHHHHHHHHHHheEEEEecCChh
Confidence            88999999999999999999999999999999999877643      344 8999999999999999999889887655

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.68  E-value=2.1e-07  Score=87.57  Aligned_cols=131  Identities=11%  Similarity=0.035  Sum_probs=107.2

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcch--hHHHHhhHHHHHHHHHHHH--------h--HHHHHhhccccc
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRR--SLTMFSGLGMAVCMTTSGY--------Y--TQLIMTGQIEKS   67 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~--------~--~~~~~~~r~~~~   67 (420)
                      +|.+..+......+..+..++|+++ |++.||+|.|  ++++.+++++.+..+...+        .  .+.+.+.-    
T Consensus       312 lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a----  387 (477)
T PF11700_consen  312 LGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLA----  387 (477)
T ss_pred             cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHH----
Confidence            3566677777777788889999999 9999999999  8998888888665555444        2  56666677    


Q ss_pred             cchhHHHHHHHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh-----hhHHHHHhHhhhcc
Q psy6665          68 LIPVFCILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL-----HWRTVAWLSLAYIL  142 (420)
Q Consensus        68 ~~~~~~~~~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~-----~wr~~f~~~~~~~~  142 (420)
                              ++.|++.| ...+...++.+|+.|+++.+..+|++....-....+||++.+.+     +-|+.+....++.+
T Consensus       388 --------~~~G~~~G-~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~  458 (477)
T PF11700_consen  388 --------VLIGLFMG-GIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFL  458 (477)
T ss_pred             --------HHHHHHhh-hHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence                    99999999 77777999999999999999999999999999999999988877     46777766666555


Q ss_pred             cc
Q psy6665         143 IP  144 (420)
Q Consensus       143 ~~  144 (420)
                      +.
T Consensus       459 ~g  460 (477)
T PF11700_consen  459 IG  460 (477)
T ss_pred             HH
Confidence            54

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.62  E-value=7.1e-07  Score=84.35  Aligned_cols=108  Identities=14%  Similarity=0.162  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh---HHHHHhhccccccchhHHHHHHHHHHhh
Q psy6665           8 YLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY---TQLIMTGQIEKSLIPVFCILFYVAISVI   83 (420)
Q Consensus         8 ~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~r~~~~~~~~~~~~~l~G~~~~   83 (420)
                      ......+..++.+++.++ ++++||+|||+++..+.++.+++.+...+.   .+.+.+..            ++.|++.+
T Consensus       259 ~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~g~~~~  326 (437)
T TIGR00792       259 FSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLI------------ILAGFGQN  326 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHH------------HHHHHHHH
Confidence            344556668888999999 999999999999999988887776665443   33444445            78888888


Q ss_pred             cccchhhhhhhhhccC-------ccchhhhHhHHHHHHHHHHHHHHHHhhhh
Q psy6665          84 AMGPSPAIVYITEVAR-------PDLRGALICIGPSITSLGMVIVYALGAVL  128 (420)
Q Consensus        84 ~~~~~~~~~~i~e~~~-------~~~r~~~~~~~~~~~~lG~~~~~~~~~~~  128 (420)
                       ...+...++++|..+       ++++|.+.++.+....+|..+++.+.+.+
T Consensus       327 -~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l  377 (437)
T TIGR00792       327 -FVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI  377 (437)
T ss_pred             -HHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             666768889988865       45679999999999999999988887765

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.61  E-value=8.7e-07  Score=75.24  Aligned_cols=154  Identities=13%  Similarity=0.216  Sum_probs=102.1

Q ss_pred             HHHHHhcchhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-------------
Q psy6665         215 FALQQLAGIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-------------  280 (420)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-------------  280 (420)
                      +.....+..|.+..|.|.+-++.|+ ..+...+.....++..+ +++.|.+.|++|++.++.++...             
T Consensus        10 ~v~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~   88 (250)
T PF06813_consen   10 WVQLCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVS   88 (250)
T ss_pred             HHHHhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3334444678899999999888899 77777777777788776 58889999999999988887776             


Q ss_pred             ---h-hHHHHHHHHHHHHHHhhch-hhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHH
Q psy6665         281 ---K-SLIPVFCILFYVAISVIGM-LSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWF  355 (420)
Q Consensus       281 ---~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~  355 (420)
                         . .....+.+..+..+.+.++ .........+.|| ++||++.|+.-....+++.+-..+...+.+. + ....+.+
T Consensus        89 ~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~-~-~~~fll~  165 (250)
T PF06813_consen   89 GRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD-D-PSSFLLF  165 (250)
T ss_pred             CccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC-C-hHHHHHH
Confidence               1 1222223333333333333 2333344557888 5799999999999999999887777666554 2 3444445


Q ss_pred             HHHHHHHHHHHhhhccc
Q psy6665         356 FALISVISIVYVYIFLP  372 (420)
Q Consensus       356 ~~~~~~~~~~~~~~~~~  372 (420)
                      .+....+..+....+++
T Consensus       166 la~~~~~v~l~~~~~vr  182 (250)
T PF06813_consen  166 LAVLPAVVCLVAMFFVR  182 (250)
T ss_pred             HHHHHHHHHHHHhhhee
Confidence            55544444444434443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.61  E-value=3.5e-07  Score=81.62  Aligned_cols=131  Identities=13%  Similarity=0.089  Sum_probs=107.1

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFY   77 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l   77 (420)
                      +|.+..+.........+..++|++. |+|.||+|-|+++..+.++..+.++...+.  ...+.+.-            .+
T Consensus       283 ~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~g------------ll  350 (438)
T COG2270         283 LGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILG------------LL  350 (438)
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHH------------HH
Confidence            3566666666667778888999999 999999999999999999999888877666  44455555            88


Q ss_pred             HHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh-----hhHHHHHhHhhhcccc
Q psy6665          78 VAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL-----HWRTVAWLSLAYILIP  144 (420)
Q Consensus        78 ~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~-----~wr~~f~~~~~~~~~~  144 (420)
                      .|...| ..+..+.+|.++..|+++-++.+|+++...-.+..++|.+.+.+     +-|.-+....++..+.
T Consensus       351 ~g~s~G-~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iG  421 (438)
T COG2270         351 VGTSLG-GAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIG  421 (438)
T ss_pred             HHHhcc-hHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence            999999 77777999999999999999999999999999999999888776     4666665555554444

>KOG2504|consensus

Probab=98.59  E-value=6.4e-07  Score=84.89  Aligned_cols=149  Identities=17%  Similarity=0.190  Sum_probs=108.9

Q ss_pred             hhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHH
Q psy6665         223 IYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCIL  290 (420)
Q Consensus       223 ~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~  290 (420)
                      .+.+..+.+.+.++.+. ..+..+...+......+..++.+.+.||+|.|.+.+.+.++           .+.+.+.+..
T Consensus        62 ~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~  141 (509)
T KOG2504|consen   62 INSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTF  141 (509)
T ss_pred             hheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            34444555666666565 66688888888888999999999999999999999888877           2333333333


Q ss_pred             HHHHHHhhchhhHH-HHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhh
Q psy6665         291 FYVAISVIGMLSIP-WTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYI  369 (420)
Q Consensus       291 ~~~~~~~~~~~~~~-~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  369 (420)
                      -...+.+.++...+ ...+..+| +++|+.++|+......+|.++-|.+..++.+..| ++..+++++.+.+-.++....
T Consensus       142 gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G-~r~~~l~~~~~~l~~~~~~~~  219 (509)
T KOG2504|consen  142 GVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYG-WRGALLIFGGISLNVLVAGAL  219 (509)
T ss_pred             HHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHH
Confidence            33333333332222 24445554 4779999999999999999999999999999999 999999999888777776655


Q ss_pred             cccc
Q psy6665         370 FLPE  373 (420)
Q Consensus       370 ~~~~  373 (420)
                      ..|.
T Consensus       220 ~rp~  223 (509)
T KOG2504|consen  220 LRPL  223 (509)
T ss_pred             cCCC
Confidence            5553

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.55  E-value=6.3e-07  Score=81.47  Aligned_cols=146  Identities=8%  Similarity=0.100  Sum_probs=88.8

Q ss_pred             hhhHHHhHHHHHHh-hCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----hhHH-----HHH---
Q psy6665         223 IYITIFYAVQFLED-MGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----KSLI-----PVF---  287 (420)
Q Consensus       223 ~~~~~~~~~~~~~~-~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----~~~~-----~~~---  287 (420)
                      ......+.|..+++ .|+ +++.+.+.+...+..++.+++.|.++||+|.||-++.....     .+..     +++   
T Consensus        23 ~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n  102 (412)
T PF01306_consen   23 WGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSN  102 (412)
T ss_dssp             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT
T ss_pred             HHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566777888876 599 99999999999999999999999999999966654433221     1111     110   


Q ss_pred             -HHHHHHH--HHhhch---hhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHH
Q psy6665         288 -CILFYVA--ISVIGM---LSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISV  361 (420)
Q Consensus       288 -~~~~~~~--~~~~~~---~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~  361 (420)
                       ......+  ..+..+   .|+.-+++.+.  .+..+.-+|=....+.+|.+++..+.|.+.+..  ....+++..+..+
T Consensus       103 ~~lg~iig~i~l~~~f~~~~~~~Ea~~er~--sr~~~feYG~~R~wGSig~ai~s~~~G~L~~i~--p~~~fwi~s~~~~  178 (412)
T PF01306_consen  103 FWLGAIIGGIYLGLVFNAGVPLSEAYAERV--SRRNGFEYGRARMWGSIGFAIASLLAGILFNIN--PNIIFWIASAAAI  178 (412)
T ss_dssp             -HHHHHHTTTTTTTTTTTHHHHHHHHHHHH--HHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcccchHHHHHHHHH--HHHhcCCcchHHHHhhHHHHHHHHHhheeeeeC--ccHHHHHHHHHHH
Confidence             0001111  111112   23333333322  133466688888999999999999999999853  4677776665555


Q ss_pred             HHHHHhhhccc
Q psy6665         362 ISIVYVYIFLP  372 (420)
Q Consensus       362 ~~~~~~~~~~~  372 (420)
                      +..++.++..|
T Consensus       179 il~lll~~~~~  189 (412)
T PF01306_consen  179 ILLLLLLLLKP  189 (412)
T ss_dssp             HHHHHHHSS--
T ss_pred             HHHHHHHHcCC
Confidence            55544443433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG0254|consensus

Probab=98.54  E-value=1.6e-06  Score=83.42  Aligned_cols=129  Identities=21%  Similarity=0.221  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHHHHHHHhhchhhHHHHHhcccC
Q psy6665         244 YLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILFYVAISVIGMLSIPWTMTAEIF  312 (420)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (420)
                      ++..+...++..++.++.|+++|++|||+.+..+.+.           .++..+...-++.+....+...+...+.+|+.
T Consensus        92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEia  171 (513)
T KOG0254|consen   92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIA  171 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcC
Confidence            6888899999999999999999999999998888776           22233333333333333333445568999999


Q ss_pred             ChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhc--CcchHHHHHHHHHHHHHHHHhhhccccCC
Q psy6665         313 PLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSV--GGSAMVQWFFALISVISIVYVYIFLPETH  375 (420)
Q Consensus       313 p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (420)
                      |++.||...+..+....+|..++ .+.+...++.  + |+..+.+..+.+++..+. .++.||+.
T Consensus       172 p~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~-Wr~~~~~~~i~~~~~~~~-~~~~pesp  233 (513)
T KOG0254|consen  172 PAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAG-WRIPLGLALIPAVILALG-MLFLPESP  233 (513)
T ss_pred             ChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCcc-HHHHHHHHHHHHHHHHHH-HHhCCCCh
Confidence            99999999999999999777777 5556655543  5 777777777777776666 67788764

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.49  E-value=2e-09  Score=102.18  Aligned_cols=131  Identities=19%  Similarity=0.189  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------h---hHHHHHHHHHHHHHHhhchhhHHHHHh
Q psy6665         243 VYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------K---SLIPVFCILFYVAISVIGMLSIPWTMT  308 (420)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (420)
                      .........++.++|+++.|+++||+|||+.+..+..+           .   ++..+...-++.+....+..+....++
T Consensus        48 ~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~  127 (451)
T PF00083_consen   48 SSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYI  127 (451)
T ss_pred             HHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            45677888899999999999999999999998887776           2   333343333444443334456677999


Q ss_pred             cccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCc---chHHHHHHHHHHHHHHHHhhhccccCC
Q psy6665         309 AEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGG---SAMVQWFFALISVISIVYVYIFLPETH  375 (420)
Q Consensus       309 ~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (420)
                      .|..|+++|+...++.+....+|..++..+.-.+ ....+   |+..+.+.++.+++. ++...+.||+.
T Consensus       128 ~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~-~~~~~~~~Wr~~~~~~~~~~l~~-~~~~~~~pESP  195 (451)
T PF00083_consen  128 SEIAPPKHRGFLSSLFQLFWALGILLASLIGYIV-SYYSDNWGWRILLIFGAIPSLLV-LLLRFFLPESP  195 (451)
T ss_pred             cccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc-ccccccccccc
Confidence            9999999999999999998888887776665333 22221   344444444444333 33446778864

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK09669 putative symporter YagG; Provisional

Probab=98.48  E-value=1.6e-06  Score=82.04  Aligned_cols=150  Identities=16%  Similarity=0.147  Sum_probs=94.4

Q ss_pred             hhHHHhHHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhc----cCchhhHhh-hccc----------hh----
Q psy6665         224 YITIFYAVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRT----YGRRSLTMF-SQIE----------KS----  282 (420)
Q Consensus       224 ~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~~~~~-~~~~----------~~----  282 (420)
                      ..+..|++.|+.+. |+ +...+.......+...+..++.|.++||    +||||..+. +...          .+    
T Consensus        26 ~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~  105 (444)
T PRK09669         26 QTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGA  105 (444)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCc
Confidence            44566777777776 88 8888899999999999999999999999    667555443 2221          10    


Q ss_pred             H---HHHH-HHHHHHHHHhhchhhHHHHHhcccC-ChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcC------cchH
Q psy6665         283 L---IPVF-CILFYVAISVIGMLSIPWTMTAEIF-PLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVG------GSAM  351 (420)
Q Consensus       283 ~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g------~~~~  351 (420)
                      .   .... ...++..++. .......++.+|+. ++++|.+..+.......+|+.+++.+...+....+      ++..
T Consensus       106 ~~~~~~~~~~~~l~~~~~t-~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~  184 (444)
T PRK09669        106 TGKIIYACVTYILLSLVYT-AINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFY  184 (444)
T ss_pred             chHHHHHHHHHHHHHHHHH-hhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHH
Confidence            0   1111 1111222222 22323347888876 55779988898888888888888776655554443      1344


Q ss_pred             HHHHHHHHHHHHHHHhhhccccC
Q psy6665         352 VQWFFALISVISIVYVYIFLPET  374 (420)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~  374 (420)
                      .+.++++++.+..+++++..+|+
T Consensus       185 ~~~i~~ii~~v~~~~~~~~~~e~  207 (444)
T PRK09669        185 AMMVMGLLGVVLFFCCFFMTKER  207 (444)
T ss_pred             HHHHHHHHHHHHHHHHhCCeEEe
Confidence            55556666666555555555554

>PRK09848 glucuronide transporter; Provisional

Probab=98.47  E-value=2.7e-06  Score=80.58  Aligned_cols=101  Identities=9%  Similarity=0.020  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh----HHHHHhhccccccchhHHHHHHHHHHhhcccchh
Q psy6665          15 GVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY----TQLIMTGQIEKSLIPVFCILFYVAISVIAMGPSP   89 (420)
Q Consensus        15 ~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~l~G~~~~~~~~~~   89 (420)
                      ..++.+++.++ +++.||+|+|+++.++.++..++.+...+.    .+.+++..            ++.|+|.+ ...+.
T Consensus       273 ~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~------------~l~g~G~~-~~~~~  339 (448)
T PRK09848        273 NLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVAL------------AIASIGQG-VTMTV  339 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHH------------HHHHHHHH-HHHHH
Confidence            35667788888 999999999999999998888877666543    34444455            78899998 76777


Q ss_pred             hhhhhhhccCcc-------chhhhHhHHHHHHHHHHHHHHHHhhhh
Q psy6665          90 AIVYITEVARPD-------LRGALICIGPSITSLGMVIVYALGAVL  128 (420)
Q Consensus        90 ~~~~i~e~~~~~-------~r~~~~~~~~~~~~lG~~~~~~~~~~~  128 (420)
                      ..++..|..|.+       ++|...++.+....+|..+++.+.+.+
T Consensus       340 ~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~  385 (448)
T PRK09848        340 MWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFI  385 (448)
T ss_pred             HHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888999988754       358889999999989888888776554

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.45  E-value=1.7e-05  Score=67.48  Aligned_cols=122  Identities=16%  Similarity=0.142  Sum_probs=88.6

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHhhHHHHHHHHHHHHhHHHHHhhccc-cccchhHHHHHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSGYYTQLIMTGQIE-KSLIPVFCILFYVA   79 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~l~G   79 (420)
                      +|.|.++.........+|..+|-+.|.+.|++|.|.++++|.+...+|.......    +-.|.+ ...+.+.+..++.|
T Consensus        32 l~~sq~~l~~l~~~~~~G~~~G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~----~~~~i~~~~~~~~~~~~~l~~  107 (250)
T PF06813_consen   32 LGYSQSQLNTLSTAGDIGSYFGILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLA----VSGRIPSLPVWLMCLFLFLGG  107 (250)
T ss_pred             hCCCHHHHHHHHHHHHHHhhccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH----HhCccCccchHHHHHHHHHHc
Confidence            3677888888888889999887444999999999999999999999988776554    111111 11111212236666


Q ss_pred             HHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh
Q psy6665          80 ISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL  128 (420)
Q Consensus        80 ~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~  128 (420)
                      .+.+ ....++.....+.|| ++||++.++.-...+++..+-..+...+
T Consensus       108 ~s~~-~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~  154 (250)
T PF06813_consen  108 NSSC-WFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAF  154 (250)
T ss_pred             ccHH-HhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHH
Confidence            7766 555556666778887 5799999999999999888777666555

>KOG0637|consensus

Probab=98.44  E-value=3e-07  Score=82.55  Aligned_cols=113  Identities=20%  Similarity=0.247  Sum_probs=77.6

Q ss_pred             HHHHHHH-HHHHH----hhcchhHHHH-hhHHHHHHHHHHHHh--HHHHHhhcccc---ccchhH--HHHHHHHHHhhcc
Q psy6665          19 MVFGLLT-SQLLR----TYGRRSLTMF-SGLGMAVCMTTSGYY--TQLIMTGQIEK---SLIPVF--CILFYVAISVIAM   85 (420)
Q Consensus        19 ~~~~~~~-g~l~d----r~Grr~~l~~-~~~~~~~~~~~~~~~--~~~~~~~r~~~---~~~~~~--~~~~l~G~~~~~~   85 (420)
                      ..+-++. |..+|    ||||||.++. +....+++.++.+++  +..++.-....   -++.++  .=+-+.-+..- .
T Consensus        80 G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n-~  158 (498)
T KOG0637|consen   80 GLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANN-T  158 (498)
T ss_pred             cceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhh-h
Confidence            3444667 99999    5998776665 666677777777777  44444433111   111111  11344556665 4


Q ss_pred             cchhhhhhhhhccCccchhh-hHhHHHHHHHHHHHHHHHHhhhhhhHH
Q psy6665          86 GPSPAIVYITEVARPDLRGA-LICIGPSITSLGMVIVYALGAVLHWRT  132 (420)
Q Consensus        86 ~~~~~~~~i~e~~~~~~r~~-~~~~~~~~~~lG~~~~~~~~~~~~wr~  132 (420)
                      ...++-+++.|...++++.+ +.++......+|+.+|..++.+.+|+-
T Consensus       159 ~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~~~~~  206 (498)
T KOG0637|consen  159 LQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYLGLYK  206 (498)
T ss_pred             hhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccccCceE
Confidence            45559999999998887777 999999999999999999998876654

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.44  E-value=1.1e-06  Score=80.37  Aligned_cols=152  Identities=13%  Similarity=0.013  Sum_probs=106.7

Q ss_pred             HHhcchhhHHHhHHHHHHhh-C----C-cchHHHHHHHHHHHHHHHHHHHHHhhhcc-CchhhHhhhccc----------
Q psy6665         218 QQLAGIYITIFYAVQFLEDM-G----S-RMNVYLATVLVGVVRMVFGLLTSQLLRTY-GRRSLTMFSQIE----------  280 (420)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~-g----~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~----------  280 (420)
                      ..-.++|.+...+..|+... +    + ++++......+...--...+++|+++||+ |+|+++..+.++          
T Consensus        32 WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~  111 (498)
T COG3104          32 WERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAI  111 (498)
T ss_pred             HHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhc
Confidence            34445666666666666543 4    7 56666666666666667788999999996 999998888776          


Q ss_pred             h---hHHHHHHHHHHHHHHhhchhhHHHHHhcccCChh--hhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHH
Q psy6665         281 K---SLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLE--IRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWF  355 (420)
Q Consensus       281 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~  355 (420)
                      .   ....+...+.+.......+=+....+..|++|++  .|-.++++.....++|+.++|.+.+++.++.| ++..|..
T Consensus       112 ~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g-~~~gF~~  190 (498)
T COG3104         112 SSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYG-WHVGFGL  190 (498)
T ss_pred             cccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhC-HHHHHHH
Confidence            2   1122222233333333334455558888998754  36778888899999999999999999999999 9999988


Q ss_pred             HHHHHHHHHHHhhhc
Q psy6665         356 FALISVISIVYVYIF  370 (420)
Q Consensus       356 ~~~~~~~~~~~~~~~  370 (420)
                      .++-..++.+..++.
T Consensus       191 aavGm~~gl~~f~~~  205 (498)
T COG3104         191 AAVGMIIGLVIFLLG  205 (498)
T ss_pred             HHHHHHHHHHHHHHc
Confidence            888887777765543

>KOG2816|consensus

Probab=98.43  E-value=6.1e-06  Score=77.05  Aligned_cols=127  Identities=19%  Similarity=0.274  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHHhhhccCchhhHhhhccc----------hhHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhh
Q psy6665         251 GVVRMVFGLLTSQLLRTYGRRSLTMFSQIE----------KSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIA  320 (420)
Q Consensus       251 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~  320 (420)
                      ++..++.++..|.++|++|||..+......          ..++..+ .. ...+..........++.+|....+.|...
T Consensus        72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~~~~~~-~~-~l~g~~~~~~s~~~a~vadis~~~~R~~~  149 (463)
T KOG2816|consen   72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQGYWFFL-LL-GLSGGFSAIFSVGFAYVADISSEEERSSS  149 (463)
T ss_pred             HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHhh-hc-ccccchhhhhhhhhhheeeccchhHHHHH
Confidence            677888899999999999999888877666          1111111 11 11111122345556899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhccccCCCCChH
Q psy6665         321 QGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFLPETHGRTLL  380 (420)
Q Consensus       321 ~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (420)
                      .|+.+.....+..++|.+.+.+.+..| ....+.+.++..++..+...+++||+..++.+
T Consensus       150 ~gll~~~~~~~~~~~p~~~~~~~~~~~-~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~  208 (463)
T KOG2816|consen  150 IGLLSGTFGAGLVIGPALGGYLVKFLG-IALVFLIAAASGILSLLYMLLFLPESLQEKER  208 (463)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence            999999999999999999999999988 89999999999999999998999998766543

>KOG0253|consensus

Probab=98.39  E-value=3e-06  Score=74.14  Aligned_cols=136  Identities=14%  Similarity=0.077  Sum_probs=95.2

Q ss_pred             CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc----------hhHHHHHHHHHHHHHHhhchhhHHHH
Q psy6665         238 GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE----------KSLIPVFCILFYVAISVIGMLSIPWT  306 (420)
Q Consensus       238 g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (420)
                      |. ..+...+......+..+++..+|.++|++|||+........          .+....++..-...+++.+..|...+
T Consensus       109 ~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg~pv~~~  188 (528)
T KOG0253|consen  109 GPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGGLPVDSA  188 (528)
T ss_pred             chhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCCccHhHH
Confidence            66 66777778888899999999999999999999887776665          22222333333333444444677778


Q ss_pred             HhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhccccCCC
Q psy6665         307 MTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFLPETHG  376 (420)
Q Consensus       307 ~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (420)
                      +-.|..|..+|..-+-+. +...+|..+...+.=.+..+.| +++.+.... .....+...++++||..+
T Consensus       189 ~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~g-wr~~l~~~~-~pl~~~a~f~~w~~ESpR  255 (528)
T KOG0253|consen  189 IYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFG-WRYLLFTSS-TPLMFAARFLVWVYESPR  255 (528)
T ss_pred             HHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHH-hHHHHHHHHHhhcccCcc
Confidence            888999999888877666 7788888888888766778888 555544444 443333444467888654

>PRK11462 putative transporter; Provisional

Probab=98.37  E-value=1.8e-05  Score=75.09  Aligned_cols=151  Identities=11%  Similarity=0.049  Sum_probs=95.2

Q ss_pred             hhhHHHhHHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhc----cCchhhHhhhcc-c-----------h---
Q psy6665         223 IYITIFYAVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRT----YGRRSLTMFSQI-E-----------K---  281 (420)
Q Consensus       223 ~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~~~~~~~~-~-----------~---  281 (420)
                      ......|+..|+.+. |+ +...+.+..+.-+...+.-++.|.++||    +||||..+.... .           .   
T Consensus        25 ~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s  104 (460)
T PRK11462         25 FDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLS  104 (460)
T ss_pred             HHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCC
Confidence            344566777777776 88 7888888899999999999999999997    577765544332 2           1   


Q ss_pred             hH--HHHH--HHHHHHHHHhhchhhHHHHHhcccCC-hhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCc------ch
Q psy6665         282 SL--IPVF--CILFYVAISVIGMLSIPWTMTAEIFP-LEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGG------SA  350 (420)
Q Consensus       282 ~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~------~~  350 (420)
                      ..  ..+.  ...++..++.. ......++..|+.+ +++|++..++-.....+|..+++.+...+.+..|+      +.
T Consensus       105 ~~~~~~y~~~~~~~~~~~~t~-~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~  183 (460)
T PRK11462        105 MNGKMIYAAITYTLLTLLYTV-VNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQ  183 (460)
T ss_pred             cchHHHHHHHHHHHHHHHHHH-HhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHH
Confidence            00  1111  11111222221 12222377788876 78899999999999999988888877666655441      33


Q ss_pred             HHHHHHHHHHHHHHHHhhhccccC
Q psy6665         351 MVQWFFALISVISIVYVYIFLPET  374 (420)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~  374 (420)
                      ....+++++.++...+++...+|+
T Consensus       184 ~~~~i~~ii~~i~~~i~~~~~kE~  207 (460)
T PRK11462        184 GGIAVLSVVAFMMLAFCFFTTKER  207 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHhcceec
Confidence            344455555555555554444554

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.37  E-value=9.8e-06  Score=77.31  Aligned_cols=151  Identities=13%  Similarity=0.147  Sum_probs=91.6

Q ss_pred             hhhHHHhHHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhh----ccCchhhHhh-hccc---------h----h
Q psy6665         223 IYITIFYAVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLR----TYGRRSLTMF-SQIE---------K----S  282 (420)
Q Consensus       223 ~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~~~~~~~-~~~~---------~----~  282 (420)
                      ...+..|++.|+.+. |+ +...+.......+...+..++.|.++|    |+|||+..+. +...         .    +
T Consensus        22 ~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~  101 (473)
T PRK10429         22 IGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFE  101 (473)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCC
Confidence            445667778888777 88 888888999999999999999999999    5588655443 3222         0    0


Q ss_pred             -HHHHHHHH----HHHHHHhhchhhHHHHHhcccC-ChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCc------ch
Q psy6665         283 -LIPVFCIL----FYVAISVIGMLSIPWTMTAEIF-PLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGG------SA  350 (420)
Q Consensus       283 -~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~------~~  350 (420)
                       ........    ++..++.. ......++..|+. ++++|.+..+.-.....+++.+.+.+...+.+..|+      +.
T Consensus       102 ~~~~~~~~~~~~~l~~~~~t~-~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~  180 (473)
T PRK10429        102 GTAQYVFVCVTYILWGMTYTI-MDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQ  180 (473)
T ss_pred             ccHHHHHHHHHHHHHHHHHHH-HcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHH
Confidence             00011111    11111111 1223347888987 588899999887777787777666655544443331      23


Q ss_pred             HHHHHHHHHHHHHHHHhhhccccC
Q psy6665         351 MVQWFFALISVISIVYVYIFLPET  374 (420)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~  374 (420)
                      ....+++++..+..+++++..||+
T Consensus       181 ~~~~i~~~~~~~~~~~~~~~~~e~  204 (473)
T PRK10429        181 MFTLVLIAFFIVSTIITLRNVHEV  204 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHcCceec
Confidence            334445555555555555445554

>TIGR01272 gluP glucose/galactose transporter

Probab=98.36  E-value=4.8e-06  Score=74.46  Aligned_cols=123  Identities=10%  Similarity=-0.039  Sum_probs=89.1

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh-HHHHHhhccccccchhHHHHHHHH
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY-TQLIMTGQIEKSLIPVFCILFYVA   79 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~l~G   79 (420)
                      |.+.++.....+.+..+.++|.+. +++.||+|+|+++.++.++..++.++.... .......-            ++.|
T Consensus       174 g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~~~~------------~l~g  241 (310)
T TIGR01272       174 GLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAMWFV------------LALG  241 (310)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH------------HHHH
Confidence            456677788899999999999999 999999999998888877777665444333 11112233            6889


Q ss_pred             HHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhh
Q psy6665          80 ISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLA  139 (420)
Q Consensus        80 ~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~  139 (420)
                      ++.+ ...+...+...+..|++ .+.+.++. ....+|..+.|.+.+.+    |.+..|++..+
T Consensus       242 ~~~s-~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~  302 (310)
T TIGR01272       242 LFNS-IMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVP  302 (310)
T ss_pred             HHHH-HHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHH
Confidence            9999 77776788888888754 45666775 45668888888766665    66777665443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.34  E-value=2.2e-06  Score=80.73  Aligned_cols=148  Identities=15%  Similarity=0.185  Sum_probs=99.4

Q ss_pred             hHHHhHHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhh----ccCchhhHhhhccc-----------h-h--H-
Q psy6665         225 ITIFYAVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLR----TYGRRSLTMFSQIE-----------K-S--L-  283 (420)
Q Consensus       225 ~~~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~~~~~~~~~~~-----------~-~--~-  283 (420)
                      ....|.+.|+.+. |+ +...+.......+...+..++.|.++|    |+||||..+.....           . +  + 
T Consensus        19 ~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~   98 (428)
T PF13347_consen   19 LLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLS   98 (428)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhh
Confidence            3445666777666 88 778888888888999999999999999    78988765543322           1 1  0 


Q ss_pred             --HH----HHHHHHHHHHHhhchhhHHHHHhcccCC-hhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcC------cch
Q psy6665         284 --IP----VFCILFYVAISVIGMLSIPWTMTAEIFP-LEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVG------GSA  350 (420)
Q Consensus       284 --~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g------~~~  350 (420)
                        ..    .+...++..++.. ......++..|+.+ +++|.+..+.......+|..+...+.+.+.+..|      ++.
T Consensus        99 ~~~~~~~~~~~~~l~~~~~t~-~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~  177 (428)
T PF13347_consen   99 FTAKLVWLFVFYILFDIAYTF-VQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYR  177 (428)
T ss_pred             hhhHHHHHHHHHHHHHHhhhh-ccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHH
Confidence              01    1111111111211 12233478889987 5789999999999999988877777777776555      255


Q ss_pred             HHHHHHHHHHHHHHHHhhhcccc
Q psy6665         351 MVQWFFALISVISIVYVYIFLPE  373 (420)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~  373 (420)
                      ....+.+++.++..++..+..||
T Consensus       178 ~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  178 WMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             HHHHHHHHHHHHHhhhhhheeee
Confidence            56666777777777777677777

>KOG3762|consensus

Probab=98.33  E-value=2.2e-06  Score=78.65  Aligned_cols=144  Identities=14%  Similarity=0.196  Sum_probs=109.4

Q ss_pred             hhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHH
Q psy6665         223 IYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCIL  290 (420)
Q Consensus       223 ~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~  290 (420)
                      ...+.+++--.+++.+- +.-.+........+.++.-++.+++.+|+|+-+++..++.+           .+++.++.+=
T Consensus       387 ~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPie  466 (618)
T KOG3762|consen  387 VGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIE  466 (618)
T ss_pred             HHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHH
Confidence            44455566556677644 66666777777888999999999999999999998888766           4444444444


Q ss_pred             HHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHH-HHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHh
Q psy6665         291 FYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAH-ILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYV  367 (420)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~-~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  367 (420)
                      ++.+......+....+|++...|++.+.++.++...... +|-.+|+++.|.+.+.+| ....|.++++.+++.++..
T Consensus       467 ilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg-~~ttf~~~giAcl~~l~~~  543 (618)
T KOG3762|consen  467 ILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG-ARTTFRIFGIACLVTLALF  543 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh-hHHHHHHHHHHHHHHHHHH
Confidence            444444444455556999999999999999999887754 677799999999999999 8888888888887776654

>KOG4686|consensus

Probab=98.31  E-value=2.2e-06  Score=72.24  Aligned_cols=115  Identities=10%  Similarity=-0.000  Sum_probs=85.5

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHH-HHHHHHHhHHHHHhhccccccchhHHHHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAV-CMTTSGYYTQLIMTGQIEKSLIPVFCILFYV   78 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~l~   78 (420)
                      ||.|......+.+.-..-.++.+++ |.++||+||+-..+.+..+..+ +-....+.++.=..+.            .+.
T Consensus       295 fGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~lsPy~~m------------~~l  362 (459)
T KOG4686|consen  295 FGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFLSPYTSM------------TFL  362 (459)
T ss_pred             hCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhccHHHHH------------HHH
Confidence            3555555555555544445566677 9999999999887775554443 3344444444445566            788


Q ss_pred             HHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh
Q psy6665          79 AISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL  128 (420)
Q Consensus        79 G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~  128 (420)
                      |+... ......+..++-..|+++.|++.+..++..++|..+.|++++.+
T Consensus       363 GLsys-llAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i  411 (459)
T KOG4686|consen  363 GLSYS-LLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFI  411 (459)
T ss_pred             hhhHH-HHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhhee
Confidence            88888 66555788899999999999999999999999999999999987

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.31  E-value=0.00025  Score=69.54  Aligned_cols=138  Identities=7%  Similarity=-0.047  Sum_probs=91.6

Q ss_pred             CccchHHHHHHHHHHHHHHHHHH-HHHHHh-hcchhHHHHhhHHHHHHHHHHHHh-HHHHHhhccccccchhHHHHHHHH
Q psy6665           3 SRMNVYLATVLVGVVRMVFGLLT-SQLLRT-YGRRSLTMFSGLGMAVCMTTSGYY-TQLIMTGQIEKSLIPVFCILFYVA   79 (420)
Q Consensus         3 ~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~l~G   79 (420)
                      .+.+.....+..+..-.-+.+++ |.++|+ +||++.+.++.++..++.++.++. .....  + ............+..
T Consensus        20 ~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~--~-~~~~~~~l~gLaLia   96 (654)
T TIGR00926        20 FSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG--H-PLHDLLDLLGLALIA   96 (654)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc--c-chHHHHHHHHHHHHH
Confidence            33444444444444334444555 999996 999999999999999998877664 11000  0 000011112236777


Q ss_pred             HHhhcccchhhhhhhhhccCcc---chhhhHhHHHHHHHHHHHHHHHHhhhh-----------hhHHHHHhHhhhcccc
Q psy6665          80 ISVIAMGPSPAIVYITEVARPD---LRGALICIGPSITSLGMVIVYALGAVL-----------HWRTVAWLSLAYILIP  144 (420)
Q Consensus        80 ~~~~~~~~~~~~~~i~e~~~~~---~r~~~~~~~~~~~~lG~~~~~~~~~~~-----------~wr~~f~~~~~~~~~~  144 (420)
                      +|.| ..-+...+...|-++++   +|.....++..+.++|.++++.+...+           +|...|.+.++..++.
T Consensus        97 ~G~G-giKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia  174 (654)
T TIGR00926        97 LGTG-GIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILA  174 (654)
T ss_pred             hhcc-ccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHH
Confidence            8888 66666888999988754   366778888888899999888776655           3888888887777665

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.31  E-value=2.5e-05  Score=69.62  Aligned_cols=141  Identities=11%  Similarity=0.046  Sum_probs=101.0

Q ss_pred             HHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-------------hhHHHHHHHHHH
Q psy6665         227 IFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-------------KSLIPVFCILFY  292 (420)
Q Consensus       227 ~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-------------~~~~~~~~~~~~  292 (420)
                      -...|.+.+..++ ..+++........+..+.++..+++.+|+|.|+.++.+..+             .......+..++
T Consensus        33 diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lF  112 (422)
T COG0738          33 DILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALF  112 (422)
T ss_pred             hhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence            3344555444477 78899999999999999999999999999999999888877             112222233333


Q ss_pred             HHHHhhch-hhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHh------------------cCcchHHH
Q psy6665         293 VAISVIGM-LSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDS------------------VGGSAMVQ  353 (420)
Q Consensus       293 ~~~~~~~~-~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~------------------~g~~~~~~  353 (420)
                      ..+.+.+. .+....++..+.|++..+.-+.+.+.+..+|.+++|.+.+.+..+                  ......++
T Consensus       113 ila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pY  192 (422)
T COG0738         113 ILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPY  192 (422)
T ss_pred             HHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHH
Confidence            33333333 444558888898888888889999999999999999999988873                  11244566


Q ss_pred             HHHHHHHHHHHHHh
Q psy6665         354 WFFALISVISIVYV  367 (420)
Q Consensus       354 ~~~~~~~~~~~~~~  367 (420)
                      ...+...++..+..
T Consensus       193 l~~~~~lvll~v~~  206 (422)
T COG0738         193 LILAGLLVLLAVLI  206 (422)
T ss_pred             HHHHHHHHHHHHHH
Confidence            66666665555544

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.28  E-value=2e-05  Score=61.80  Aligned_cols=106  Identities=10%  Similarity=0.078  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh-HHHHHhhccccccchhHHHHHHHHHHhhccc
Q psy6665           9 LATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY-TQLIMTGQIEKSLIPVFCILFYVAISVIAMG   86 (420)
Q Consensus         9 ~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~l~G~~~~~~~   86 (420)
                      ....++......+++++ +.+.+++|.|+.+++|.+...+-....... .+.++.+-            ++.|++.+ ..
T Consensus        40 ~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~~~~~l~~~s------------~l~G~~~a-~l  106 (156)
T PF05978_consen   40 YYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYPNSYTLYPAS------------ALLGFGAA-LL  106 (156)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH------------HHHhhhhH-Hh
Confidence            44555666777888888 999999999999999999998766655444 77778888            99999999 88


Q ss_pred             chhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhh
Q psy6665          87 PSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAV  127 (420)
Q Consensus        87 ~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~  127 (420)
                      ..+...++.+..++++|++-.++.......+.++|.++...
T Consensus       107 W~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~  147 (156)
T PF05978_consen  107 WTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFF  147 (156)
T ss_pred             hHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            88788999999999999999999888888888887766543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.28  E-value=0.0025  Score=59.80  Aligned_cols=121  Identities=7%  Similarity=-0.087  Sum_probs=85.8

Q ss_pred             hHHHHHHHHHHHHHHH-HHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh-H--HHHH----------hhc-cc-----
Q psy6665           7 VYLATVLVGVVRMVFG-LLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY-T--QLIM----------TGQ-IE-----   65 (420)
Q Consensus         7 ~~~~~~~~~~~g~~~~-~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~--~~~~----------~~r-~~-----   65 (420)
                      ......+...+-..+. .++ +++++|++|++++-.....+.+...++++. +  ...+          ..+ ..     
T Consensus        44 ~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i  123 (472)
T TIGR00769        44 IIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFI  123 (472)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHH
Confidence            3444555555555555 666 999999999999998888887777776665 1  1110          000 00     


Q ss_pred             --cccchhHHHHHHHHHHhhcccch-hhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh
Q psy6665          66 --KSLIPVFCILFYVAISVIAMGPS-PAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL  128 (420)
Q Consensus        66 --~~~~~~~~~~~l~G~~~~~~~~~-~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~  128 (420)
                        .+.+...++|+...+... .... .-+.+++|.++.+|-.|..++.+.+.++|.++++.+..++
T Consensus       124 ~~~~~W~~~~FYv~~elw~~-~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~  188 (472)
T TIGR00769       124 AILRIWSFALFYVMAELWGS-VVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYF  188 (472)
T ss_pred             HHHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              012233356777778777 4443 7899999999999999999999999999999999887765

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.28  E-value=9.8e-06  Score=72.32  Aligned_cols=124  Identities=18%  Similarity=0.157  Sum_probs=97.1

Q ss_pred             hHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh----HHHHHhhccccccchhHHHHHHHHHH
Q psy6665           7 VYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY----TQLIMTGQIEKSLIPVFCILFYVAIS   81 (420)
Q Consensus         7 ~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~l~G~~   81 (420)
                      ......+.+.++..++.++ |.++||+|||+.+..+.....++.+.+.+.    .+.+++.|            +.+|++
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~g~~  107 (338)
T COG0477          40 LYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILR------------LLQGLG  107 (338)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHH------------HHHHhh
Confidence            4567778888899999888 999999999988888887655555555554    46777888            889999


Q ss_pred             hhcccchhhhhhhhhccCc-cchhhhHhHHHH-HHHHHHHHHHHHhhhh------hhHHHHHhHhhhccc
Q psy6665          82 VIAMGPSPAIVYITEVARP-DLRGALICIGPS-ITSLGMVIVYALGAVL------HWRTVAWLSLAYILI  143 (420)
Q Consensus        82 ~~~~~~~~~~~~i~e~~~~-~~r~~~~~~~~~-~~~lG~~~~~~~~~~~------~wr~~f~~~~~~~~~  143 (420)
                      .+ ...+...+++.|+.|+ ++|+...+.... ...+|..+++.++..+      +||..|.........
T Consensus       108 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (338)
T COG0477         108 GG-GLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLL  176 (338)
T ss_pred             hH-HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            99 7777799999999987 678999998888 5777888887666554      688866666655543

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.23  E-value=0.00012  Score=64.78  Aligned_cols=145  Identities=17%  Similarity=0.112  Sum_probs=90.0

Q ss_pred             HHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc----------hhHHHHHHHHHHHHHHhhchh
Q psy6665         233 FLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE----------KSLIPVFCILFYVAISVIGML  301 (420)
Q Consensus       233 ~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~  301 (420)
                      .+++.|+ ..+....+........+...+.|.++||+|||+..+...++          +....+++.-++.+....-..
T Consensus        60 LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~~~~~L~~GRvlgGiaTSLLf  139 (354)
T PF05631_consen   60 LYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSSNYPVLLLGRVLGGIATSLLF  139 (354)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence            3355588 78888888888899999999999999999999887766665          222223222222222111112


Q ss_pred             hHHHH-Hhccc----CChhhhhhhHHHHHHH-HHHHHHHHHHHhHHHHHhcCc-chHHHHHHHHHHHHHHHHhhhccccC
Q psy6665         302 SIPWT-MTAEI----FPLEIRGIAQGLTFCL-AHILMFFALQYYPWFKDSVGG-SAMVQWFFALISVISIVYVYIFLPET  374 (420)
Q Consensus       302 ~~~~~-~~~~~----~p~~~r~~~~g~~~~~-~~~~~~~~~~~~g~l~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (420)
                      ...-+ ++.|.    +|++..+..++...+. +.+..+.+..+...+.+..|. ...+|.....+..++.+++....+|.
T Consensus       140 S~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~EN  219 (354)
T PF05631_consen  140 SAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPEN  219 (354)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhccccc
Confidence            22112 23333    5666666666655533 334455555555666776651 46788888888888777776666776


Q ss_pred             CCC
Q psy6665         375 HGR  377 (420)
Q Consensus       375 ~~~  377 (420)
                      .+.
T Consensus       220 yg~  222 (354)
T PF05631_consen  220 YGD  222 (354)
T ss_pred             CCC
Confidence            543

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.21  E-value=2.8e-05  Score=70.50  Aligned_cols=109  Identities=12%  Similarity=-0.013  Sum_probs=69.3

Q ss_pred             HHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHHHHHHhhcccchhhhh
Q psy6665          16 VVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFYVAISVIAMGPSPAIV   92 (420)
Q Consensus        16 ~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l~G~~~~~~~~~~~~~   92 (420)
                      .+-..+.-+. .++.+|..-+.=.....+++.++.++.+++  .+.-+++-            ++.+++.| ......-.
T Consensus        69 i~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv------------~las~ssg-~GE~tfL~  135 (402)
T PF02487_consen   69 ILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGV------------VLASLSSG-LGEVTFLS  135 (402)
T ss_pred             HHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHH------------HHHhhhhh-hhHHHHHH
Confidence            3444455566 777888765444555666777788888876  66666777            88888888 77774444


Q ss_pred             hhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh-----hhHHHHHhHhhhcc
Q psy6665          93 YITEVARPDLRGALICIGPSITSLGMVIVYALGAVL-----HWRTVAWLSLAYIL  142 (420)
Q Consensus        93 ~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~-----~wr~~f~~~~~~~~  142 (420)
                       .+..+++    ...+-+.++.+.+.++|+..-..+     +-|..++....+.+
T Consensus       136 -lt~~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~  185 (402)
T PF02487_consen  136 -LTHFYGK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPA  185 (402)
T ss_pred             -HHHhcCc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence             4556653    346777777777777776543333     34666665555443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG2325|consensus

Probab=98.17  E-value=1.1e-05  Score=74.50  Aligned_cols=170  Identities=13%  Similarity=0.107  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHhcchhhHHHhHHHHHHhh--CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCc-hhhHhhhccc---
Q psy6665         208 LLVITVLFALQQLAGIYITIFYAVQFLEDM--GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGR-RSLTMFSQIE---  280 (420)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~---  280 (420)
                      .++......+.....+.....-.-.|+++.  +- .+-.++......++.++++++.|....|.++ |+.++.+.++   
T Consensus        35 si~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~  114 (488)
T KOG2325|consen   35 SIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAII  114 (488)
T ss_pred             hHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHH
Confidence            333343333333333333334444555553  44 5667788888999999999999999999885 5555555554   


Q ss_pred             ------------hhHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHh---
Q psy6665         281 ------------KSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDS---  345 (420)
Q Consensus       281 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~---  345 (420)
                                  +.+..+++..-+..+.+.+.....-.|+++..-.+.|.++++..+....+|..+||.+...+...   
T Consensus       115 g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~  194 (488)
T KOG2325|consen  115 GNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEK  194 (488)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCC
Confidence                        22333333333444444455556669999977777888888888887778888887776544321   


Q ss_pred             ---------cCcchHHHHHHHHHHHHHHHHhhhccccCCCC
Q psy6665         346 ---------VGGSAMVQWFFALISVISIVYVYIFLPETHGR  377 (420)
Q Consensus       346 ---------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (420)
                               ++.+..+-++.+.+.++.+++..++.+|....
T Consensus       195 G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~  235 (488)
T KOG2325|consen  195 GFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRG  235 (488)
T ss_pred             ceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccC
Confidence                     11255677888888888888888888775443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.16  E-value=2.2e-05  Score=72.54  Aligned_cols=124  Identities=20%  Similarity=0.292  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh---HHH----HHhhccccccchhHHHHHHHH
Q psy6665           8 YLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY---TQL----IMTGQIEKSLIPVFCILFYVA   79 (420)
Q Consensus         8 ~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~----~~~~r~~~~~~~~~~~~~l~G   79 (420)
                      .....++..++-++.... +++..|+|.|+++.++.+.+++=..+.+..   .+.    .+...            .+.|
T Consensus       245 ~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q------------~lhG  312 (400)
T PF03825_consen  245 IGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQ------------LLHG  312 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH------------hhhh
Confidence            344455666777777777 999999999999999999988877776654   222    22334            5799


Q ss_pred             HHhhcccchhhhhhhhhccCccchhhhHhHHHHH-HHHHHHHHHHHhhhh----------hhHHHHHhHhhhcccc
Q psy6665          80 ISVIAMGPSPAIVYITEVARPDLRGALICIGPSI-TSLGMVIVYALGAVL----------HWRTVAWLSLAYILIP  144 (420)
Q Consensus        80 ~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~-~~lG~~~~~~~~~~~----------~wr~~f~~~~~~~~~~  144 (420)
                      +..+ .....+..|+.+..|++.|+++.++++.. .++|..+|..+++.+          .|...+.+.+++.++.
T Consensus       313 ~tf~-~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~  387 (400)
T PF03825_consen  313 LTFG-LFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVI  387 (400)
T ss_pred             HHHH-HHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHH
Confidence            9999 88888999999999999999999998764 678999999888887          3555565565554443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.14  E-value=0.00019  Score=63.15  Aligned_cols=146  Identities=16%  Similarity=0.121  Sum_probs=111.0

Q ss_pred             chhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc---------hhHHHHHHHHH
Q psy6665         222 GIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE---------KSLIPVFCILF  291 (420)
Q Consensus       222 ~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~---------~~~~~~~~~~~  291 (420)
                      ....+.-.++.+-++.|. ...++..+.+..+...+.+++..++.+|+|.++.+..++++         ......+....
T Consensus        27 ~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~~~~~L~~gt  106 (395)
T COG2807          27 AITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLGGLPLLFLGT  106 (395)
T ss_pred             hhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            345555666777777788 88889999999999999999999999999999998888776         11122222222


Q ss_pred             HHHHHhhch-hhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhh
Q psy6665         292 YVAISVIGM-LSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVY  368 (420)
Q Consensus       292 ~~~~~~~~~-~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  368 (420)
                      ...+.+.+. +......+.+.||++ -+..+|++.....+++++++.+...+.++.++|+..+.+.+..++++.++.+
T Consensus       107 ~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~Wl  183 (395)
T COG2807         107 LLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWL  183 (395)
T ss_pred             HHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHh
Confidence            333333333 444557888899955 6999999999999999999999999999885588888888888888876543

>TIGR00788 fbt folate/biopterin transporter

Probab=98.13  E-value=7.7e-05  Score=70.91  Aligned_cols=161  Identities=11%  Similarity=0.029  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHhcchhhHHHhHHHHHHh-hCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccC-----chhhHhhhccc--
Q psy6665         210 VITVLFALQQLAGIYITIFYAVQFLED-MGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYG-----RRSLTMFSQIE--  280 (420)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-----~~~~~~~~~~~--  280 (420)
                      .......+.+... .......+.++.+ .|+ +.+.+.......+...+-. +.|.++||++     ||+.+..+.++  
T Consensus        29 ~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~-l~g~l~D~~~i~G~rRr~~l~~~~~l~~  106 (468)
T TIGR00788        29 AIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKP-FAGVMSDTFPLFGYTKRWYLVLSGLLGS  106 (468)
T ss_pred             HHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCccchHHHHHHHHHHH
Confidence            3333334444444 5555556666665 488 6666666676666666644 4999999996     55544433322  


Q ss_pred             ----------hhHHHHHH-HHHHHHHHhhchhhHHHHHhcccCChhhhhhh---HHHHHHHHHHHHHHHHHHhHHHHHhc
Q psy6665         281 ----------KSLIPVFC-ILFYVAISVIGMLSIPWTMTAEIFPLEIRGIA---QGLTFCLAHILMFFALQYYPWFKDSV  346 (420)
Q Consensus       281 ----------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~---~g~~~~~~~~~~~~~~~~~g~l~~~~  346 (420)
                                .+...... ..+...+.....-...-++..|..+ +.++..   .++......+|..+++.+.|.+.+..
T Consensus       107 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~  185 (468)
T TIGR00788       107 AILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKT  185 (468)
T ss_pred             HHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                      11112222 2222222222223444588889888 444443   33334445589999999999999998


Q ss_pred             CcchHHHHHHHHHHHHHHHHhhhccccCC
Q psy6665         347 GGSAMVQWFFALISVISIVYVYIFLPETH  375 (420)
Q Consensus       347 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (420)
                      + +...+.+.+.+.++.. +...+.+|++
T Consensus       186 ~-~~~~f~~~a~l~ll~~-~~~~~~~E~~  212 (468)
T TIGR00788       186 L-TRILFLITAALLLLQL-FVSNLSKERR  212 (468)
T ss_pred             C-cchHHHHHHHHHHHHH-HHHHhccccc
Confidence            8 8888888887777774 3445677754

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG0252|consensus

Probab=98.01  E-value=5.3e-05  Score=68.58  Aligned_cols=94  Identities=16%  Similarity=0.143  Sum_probs=63.6

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc---------------h--hHHHHHHHHHHHHHHhh-chh
Q psy6665         240 RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE---------------K--SLIPVFCILFYVAISVI-GML  301 (420)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~---------------~--~~~~~~~~~~~~~~~~~-~~~  301 (420)
                      +...+.......++.++|+++.|++.||+|||++.-..+++               .  .....+...-+..+.+. +=.
T Consensus        83 s~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDY  162 (538)
T KOG0252|consen   83 SGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDY  162 (538)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCC
Confidence            34455677778899999999999999999999875544443               1  22222222222333333 337


Q ss_pred             hHHHHHhcccCChhhhhhhHHHHHHHHHHHHH
Q psy6665         302 SIPWTMTAEIFPLEIRGIAQGLTFCLAHILMF  333 (420)
Q Consensus       302 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~  333 (420)
                      |+..+..+|....+.||.-.+.....+..|..
T Consensus       163 PlSAtI~SE~an~~~RGa~iaavFa~Qg~Gil  194 (538)
T KOG0252|consen  163 PLSATIMSESANKKTRGAFIAAVFAMQGFGIL  194 (538)
T ss_pred             cchHHHhhhhhhhccccceeEEEEEecchhHh
Confidence            89889999999999999887766665554433

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.00  E-value=0.00017  Score=66.71  Aligned_cols=153  Identities=12%  Similarity=0.142  Sum_probs=103.7

Q ss_pred             hhhHHHhHHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhcc----CchhhHhhhccc----------------
Q psy6665         223 IYITIFYAVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTY----GRRSLTMFSQIE----------------  280 (420)
Q Consensus       223 ~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~----g~~~~~~~~~~~----------------  280 (420)
                      ......|+..|+.+. |+ +..++.+..+.-+..++.-++.|.++||.    ||+|..++...+                
T Consensus        28 ~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~  107 (467)
T COG2211          28 FGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFS  107 (467)
T ss_pred             HHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcc
Confidence            455677888888887 88 88888899999999999999999999974    665554443322                


Q ss_pred             ---hhHHHHHHHHHHHHHHhhchhhHHHHHhcccCC-hhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCc------ch
Q psy6665         281 ---KSLIPVFCILFYVAISVIGMLSIPWTMTAEIFP-LEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGG------SA  350 (420)
Q Consensus       281 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~------~~  350 (420)
                         ......+...++..++.....| ..++.+|+.+ +++|.+..+.-.....+|+.+...+.+.+....|+      +.
T Consensus       108 ~~~k~~ya~vtY~l~~l~YT~vniP-y~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~  186 (467)
T COG2211         108 MTGKLIYALVTYMLLGLGYTLVNIP-YGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQ  186 (467)
T ss_pred             cCcchHHHHHHHHHHHHHHHheeCc-hhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHH
Confidence               1111122222222333322222 2377777754 67899999999999999999888888887766552      44


Q ss_pred             HHHHHHHHHHHHHHHHhhhccccCCC
Q psy6665         351 MVQWFFALISVISIVYVYIFLPETHG  376 (420)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (420)
                      ....+++++.++..+++++-.+|+..
T Consensus       187 ~~~~~~~vi~~i~~l~~~~~v~ER~~  212 (467)
T COG2211         187 GTALVLGVIGVILLLFCFFNVKERVV  212 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccC
Confidence            55566667777777777766666543

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.92  E-value=0.00024  Score=63.95  Aligned_cols=131  Identities=15%  Similarity=0.129  Sum_probs=107.5

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHH-hhcchhHHHHhhHHHHHHHHHHHHh-----HHHHHhhccccccchhHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLR-TYGRRSLTMFSGLGMAVCMTTSGYY-----TQLIMTGQIEKSLIPVFC   73 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~d-r~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~r~~~~~~~~~~   73 (420)
                      ||.+..+.....+....|..+|... |++.. |.++|+.-.+++....++..+..++     .+.+...-          
T Consensus       239 fgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~----------  308 (403)
T PF03209_consen  239 FGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGV----------  308 (403)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH----------
Confidence            5677888888899999999999999 88887 6888888888888888877766655     56677777          


Q ss_pred             HHHHHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh--------------hhHHHHHhHhh
Q psy6665          74 ILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL--------------HWRTVAWLSLA  139 (420)
Q Consensus        74 ~~~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~--------------~wr~~f~~~~~  139 (420)
                        ++.|++.| .+.....+.+.|..++++.|..+|.++..+.++..++..+++.+              +|...|.+.++
T Consensus       309 --~l~G~g~G-~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~  385 (403)
T PF03209_consen  309 --FLLGLGNG-LFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAV  385 (403)
T ss_pred             --HHHHHhhh-HHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHH
Confidence              99999999 99998999999999999999999999999988777777776665              46666766666


Q ss_pred             hcccc
Q psy6665         140 YILIP  144 (420)
Q Consensus       140 ~~~~~  144 (420)
                      ..++.
T Consensus       386 ll~~a  390 (403)
T PF03209_consen  386 LLLAA  390 (403)
T ss_pred             HHHHH
Confidence            65554

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG3810|consensus

Probab=97.90  E-value=0.00034  Score=61.05  Aligned_cols=321  Identities=12%  Similarity=0.108  Sum_probs=174.1

Q ss_pred             HHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHHHHHHhhcccchhhhhhh
Q psy6665          18 RMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFYVAISVIAMGPSPAIVYI   94 (420)
Q Consensus        18 g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~i   94 (420)
                      .+.++.++ =.+.|-.--|+++++-.+..........+.  .+.+=+..            +..|...+ .-. +-++|+
T Consensus        54 SYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE------------~FyG~~tA-aEI-AYysYI  119 (433)
T KOG3810|consen   54 SYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLE------------FFYGPATA-AEI-AYYSYI  119 (433)
T ss_pred             HHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeeh------------hhcChHHH-HHH-hhhhee
Confidence            34555566 677888877888887655555444444444  55555566            77777766 444 488999


Q ss_pred             hhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh------hhHHHHHhH---hhhccccccceeeecCcHHHHHHHHHHH
Q psy6665          95 TEVARPDLRGALICIGPSITSLGMVIVYALGAVL------HWRTVAWLS---LAYILIPSPVWLLNKGRANQALKSLKYL  165 (420)
Q Consensus        95 ~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~------~wr~~f~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~  165 (420)
                      -+..+|+++.++.+...+..-.|...|..++..+      +++..-.+.   ..+..+.  .++ .++.+ +..   ..-
T Consensus       120 Ys~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~--A~f-LP~v~-rSl---~f~  192 (433)
T KOG3810|consen  120 YSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLL--ALF-LPRVK-RSL---YFH  192 (433)
T ss_pred             eeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHH--Hhh-CCCCc-hhh---hhh
Confidence            9999999999999999999999988888888776      222222211   1111111  111 11111 110   000


Q ss_pred             hcchhhhhhhHHHHhhhccchhhhh----hhhHHHHHh-hccccchHHHHHHHHHHHHHhcchhhHHHhHHHHHHhhCC-
Q psy6665         166 ARNYKEVKNKEQELKKMNSTKENQS----LSARLIKMV-TMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGS-  239 (420)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-  239 (420)
                      +++++....   +.  ++...+.+.    +.-+..+++ .....+++.+..-.++.....++++.+.+|.....++..- 
T Consensus       193 ~~~~~~~v~---~~--e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~  267 (433)
T KOG3810|consen  193 RLEDKISVG---DL--EEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPN  267 (433)
T ss_pred             cccccceec---cc--hhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCC
Confidence            000000000   00  111111000    111112221 1222333344444455566666788888888888776522 


Q ss_pred             --cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHh--hhccc------------hhHHHHHHHHHHHHHHhhchhhH
Q psy6665         240 --RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTM--FSQIE------------KSLIPVFCILFYVAISVIGMLSI  303 (420)
Q Consensus       240 --~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~  303 (420)
                        ...-+..=.+..+.++++.+..|++.-.+.|+.-++  ++...            +-|.......++...+... .++
T Consensus       268 ~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~-iti  346 (433)
T KOG3810|consen  268 PANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLT-ITI  346 (433)
T ss_pred             chhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhh-hhH
Confidence              112223445556778888889999876666653222  22222            2222233333333333333 344


Q ss_pred             HHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcC----------cchHHHHHHHHHHHHHHHHhh
Q psy6665         304 PWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVG----------GSAMVQWFFALISVISIVYVY  368 (420)
Q Consensus       304 ~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g----------~~~~~~~~~~~~~~~~~~~~~  368 (420)
                      ....+++....+.-|..+|+..++.-+...+-..+.   .|..|          -+...|.+++++.++...+.+
T Consensus       347 A~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~iV---vd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~  418 (433)
T KOG3810|consen  347 ATFQIARNLSSELFGLVFGINTFVALILQSILTLIV---VDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEY  418 (433)
T ss_pred             HHHHHHHhhhhhhheeeeehHHHHHHHHHHhheEEE---EcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHH
Confidence            445555666777789999999988877776655544   44322          134567777777777766543

>KOG3574|consensus

Probab=97.78  E-value=0.002  Score=57.23  Aligned_cols=97  Identities=11%  Similarity=0.071  Sum_probs=60.1

Q ss_pred             HHHHHhhcchhHHHH-hhHHHHHHHHHHHHhHHHHHhhccccccchhH-H--HHHHHHHHhhcccchhhhhhhhhccCcc
Q psy6665          26 SQLLRTYGRRSLTMF-SGLGMAVCMTTSGYYTQLIMTGQIEKSLIPVF-C--ILFYVAISVIAMGPSPAIVYITEVARPD  101 (420)
Q Consensus        26 g~l~dr~Grr~~l~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~--~~~l~G~~~~~~~~~~~~~~i~e~~~~~  101 (420)
                      ...+.|+||||..++ +..+.+..+...+......+..  ..+...+. .  .|++.-+.++ .-.++.-.+.-.+..++
T Consensus        89 s~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~--ng~~p~v~~lt~~f~LLnflaA-tQDIAVDgwALtmLs~e  165 (510)
T KOG3574|consen   89 SVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGG--NGGLPNVVALTLLFLLLNFLAA-TQDIAVDGWALTMLSRE  165 (510)
T ss_pred             HHHHHhhccccceeeehHHHHHHHHHHHhhCCCccccc--CCCCcchHHHHHHHHHHHHHHh-hhhhhhhHHHHHhcCHh
Confidence            333349999987665 3333333333332221111111  12222222 2  4677778888 77787888888899999


Q ss_pred             chhhhHhHHHHHHHHHHHHHHHHh
Q psy6665         102 LRGALICIGPSITSLGMVIVYALG  125 (420)
Q Consensus       102 ~r~~~~~~~~~~~~lG~~~~~~~~  125 (420)
                      +-|-+......+.+.|.+++..+-
T Consensus       166 ~lgyaST~q~Vg~~~GyfL~~~if  189 (510)
T KOG3574|consen  166 NLGYASTCQSVGQTAGYFLGNVVF  189 (510)
T ss_pred             hcCchhHHHHHHHhhhHHhhccee
Confidence            999998888888888888876543

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=97.74  E-value=0.0043  Score=57.37  Aligned_cols=111  Identities=14%  Similarity=0.175  Sum_probs=65.0

Q ss_pred             HHHHHHHHH-HHHHHhhcchhHHHH-hhHHHHHHHHHHHHhH-HHH--------Hhhcccc--ccch--hH-HHHHHHHH
Q psy6665          17 VRMVFGLLT-SQLLRTYGRRSLTMF-SGLGMAVCMTTSGYYT-QLI--------MTGQIEK--SLIP--VF-CILFYVAI   80 (420)
Q Consensus        17 ~g~~~~~~~-g~l~dr~Grr~~l~~-~~~~~~~~~~~~~~~~-~~~--------~~~r~~~--~~~~--~~-~~~~l~G~   80 (420)
                      +-..-++++ ...+.|+||||..++ .-.+.++..+..+... ..+        ...+.+.  ....  .+ ..|++.=+
T Consensus        51 lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~f  130 (544)
T PF13000_consen   51 LKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVF  130 (544)
T ss_pred             HHHhhhhhhhhhcccccCCcchhhhHHHHHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHH
Confidence            333445555 888889999988776 4444444444444331 111        1111110  0011  11 22333434


Q ss_pred             HhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh
Q psy6665          81 SVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL  128 (420)
Q Consensus        81 ~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~  128 (420)
                      -++ .-..+.-.+.-.+..+++++.+..-...+.+.|.+++..+--.+
T Consensus       131 l~A-TQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlal  177 (544)
T PF13000_consen  131 LCA-TQDIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLAL  177 (544)
T ss_pred             HHc-cCCceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhh
Confidence            455 55566777778888899999999999999999988887654443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG4332|consensus

Probab=97.71  E-value=0.00063  Score=57.26  Aligned_cols=75  Identities=15%  Similarity=0.067  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh-HHHHHhhccccccchhHHHHHHHHHHhhcccch
Q psy6665          11 TVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY-TQLIMTGQIEKSLIPVFCILFYVAISVIAMGPS   88 (420)
Q Consensus        11 ~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~l~G~~~~~~~~~   88 (420)
                      .+..++-..++-..+ |-++||-|||+.-+.-.+.+.++++.---- |-.++++|            ++-|+..+ ....
T Consensus        77 LfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiTKhSpqYkVLmVGR------------~LGGiaTs-LLFS  143 (454)
T KOG4332|consen   77 LFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKHSPQYKVLMVGR------------VLGGIATS-LLFS  143 (454)
T ss_pred             eeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHhhcCCceEEEeehh------------hhhhHHHH-HHHH
Confidence            333333334444445 999999999996555444444433322211 88899999            99999988 5544


Q ss_pred             hhh-hhhhhcc
Q psy6665          89 PAI-VYITEVA   98 (420)
Q Consensus        89 ~~~-~~i~e~~   98 (420)
                      .-- =++.|.-
T Consensus       144 aFEsWliaEHn  154 (454)
T KOG4332|consen  144 AFESWLIAEHN  154 (454)
T ss_pred             HHHHHHHHHhh
Confidence            333 3566665

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.71  E-value=0.00016  Score=49.16  Aligned_cols=59  Identities=14%  Similarity=0.269  Sum_probs=51.3

Q ss_pred             HhcchhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhh
Q psy6665         219 QLAGIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFS  277 (420)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~  277 (420)
                      .+++...+.-|.|.++++.|+ +.+.+....+..+..+++.++.|.++||.++++.....
T Consensus        12 ~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~   71 (77)
T PF12832_consen   12 YFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLG   71 (77)
T ss_pred             HHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHH
Confidence            334466788899999998899 89999999999999999999999999999998876554

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.62  E-value=0.002  Score=63.38  Aligned_cols=144  Identities=10%  Similarity=0.103  Sum_probs=90.6

Q ss_pred             hHHHhHHHHHHh-hCC-cchHHHHHHHHHHHHHHHHHHHHHhhhc-cCchhhHhhhccc----------hh-------H-
Q psy6665         225 ITIFYAVQFLED-MGS-RMNVYLATVLVGVVRMVFGLLTSQLLRT-YGRRSLTMFSQIE----------KS-------L-  283 (420)
Q Consensus       225 ~~~~~~~~~~~~-~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~----------~~-------~-  283 (420)
                      .+...+..|+.+ .|+ ...+......+....-+..+++|+++|+ +|+++.+..+.++          ..       . 
T Consensus         5 Gm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~   84 (654)
T TIGR00926         5 GMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLH   84 (654)
T ss_pred             ecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchH
Confidence            334444444443 377 5556666666666667778888999997 5888887776665          00       0 


Q ss_pred             -HHHHHHHHHHHHHhhchhhHHHHHhcccCChh---hhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcC------cchHHH
Q psy6665         284 -IPVFCILFYVAISVIGMLSIPWTMTAEIFPLE---IRGIAQGLTFCLAHILMFFALQYYPWFKDSVG------GSAMVQ  353 (420)
Q Consensus       284 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g------~~~~~~  353 (420)
                       ...+..+.+..+...++-|...+...|.++++   .+...+.+.....++|+.+++.+.+++.+..+      ++...|
T Consensus        85 ~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF  164 (654)
T TIGR00926        85 DLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAF  164 (654)
T ss_pred             HHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHH
Confidence             01111222222223334455557778877643   46778899999999999999999999875541      266677


Q ss_pred             HHHHHHHHHHHHHhh
Q psy6665         354 WFFALISVISIVYVY  368 (420)
Q Consensus       354 ~~~~~~~~~~~~~~~  368 (420)
                      .+.+++.+++.++..
T Consensus       165 ~i~~i~m~ia~lvf~  179 (654)
T TIGR00926       165 GVPAILMILALIVFM  179 (654)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            777766666665543

>KOG3762|consensus

Probab=97.62  E-value=9.5e-05  Score=68.29  Aligned_cols=118  Identities=15%  Similarity=0.116  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHHHHHHhhcccchhh
Q psy6665          14 VGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFYVAISVIAMGPSPA   90 (420)
Q Consensus        14 ~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l~G~~~~~~~~~~~   90 (420)
                      ....|-+..-++ +++..|+|+-+++..++.+..+=.+...+.  .|+.+...            +++|+..+ .....+
T Consensus       414 ~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPie------------ilqgit~a-liWaa~  480 (618)
T KOG3762|consen  414 LCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIE------------ILQGITHA-LIWAAI  480 (618)
T ss_pred             hhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHH------------HHHHHHHH-HHHHHH
Confidence            345566666677 999999999999999999998888888877  88888899            99999999 777779


Q ss_pred             hhhhhhccCccchhhhHhHHHHHH-HHHHHHHHHHhhh----hhhHHHHHhHhhhcccc
Q psy6665          91 IVYITEVARPDLRGALICIGPSIT-SLGMVIVYALGAV----LHWRTVAWLSLAYILIP  144 (420)
Q Consensus        91 ~~~i~e~~~~~~r~~~~~~~~~~~-~lG~~~~~~~~~~----~~wr~~f~~~~~~~~~~  144 (420)
                      .+|++...||+-|..+.++.+... ++|--+|+++++.    ++=|..|.+.++.+++.
T Consensus       481 ~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~  539 (618)
T KOG3762|consen  481 ISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVT  539 (618)
T ss_pred             HHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHH
Confidence            999999999999999999875443 4555555555554    47788888877777665

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.40  E-value=0.0088  Score=54.68  Aligned_cols=166  Identities=9%  Similarity=0.053  Sum_probs=90.4

Q ss_pred             hHHHHHHHHHHHHHhcchhhHHHhHHHHHHh--hCC-cchHHHHH-HHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-
Q psy6665         206 KPLLVITVLFALQQLAGIYITIFYAVQFLED--MGS-RMNVYLAT-VLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-  280 (420)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~-~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-  280 (420)
                      +.....+...++..+   -..-.|+..|+.+  .|+ ..+...-. -+..=..+..-+....+.|.++-|++++++.+. 
T Consensus         5 ~~~~llc~~gf~~~f---rPsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~   81 (412)
T PF01770_consen    5 KITLLLCLFGFFKEF---RPSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSY   81 (412)
T ss_pred             HHHHHHHHHHHHHhc---CCCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            334444444444333   2233344455544  477 44433222 122223344555677789999999998888776 


Q ss_pred             -hhHHH------HHHHHHHHHHHhh--chhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcC-cch
Q psy6665         281 -KSLIP------VFCILFYVAISVI--GMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVG-GSA  350 (420)
Q Consensus       281 -~~~~~------~~~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g-~~~  350 (420)
                       ..+..      +..+-+...+++.  +.-...++++-...|+++-.++.+......-+|.+++..++-.+....+ ++.
T Consensus        82 i~t~~lll~~~sv~~mq~~q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~  161 (412)
T PF01770_consen   82 IITWLLLLFGTSVLAMQLMQFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYF  161 (412)
T ss_pred             HHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence             11111      1111122222222  2234455777777888888899999999999998888888776666433 133


Q ss_pred             HHHHHHHHHHHHHHHHhhhccccCC
Q psy6665         351 MVQWFFALISVISIVYVYIFLPETH  375 (420)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~  375 (420)
                      ....+......++.++. +++|..+
T Consensus       162 ~L~~isl~~~~~a~~~~-~fLP~~~  185 (412)
T PF01770_consen  162 QLNYISLASVSLALLIA-LFLPMPK  185 (412)
T ss_pred             HHHHHHHHHHHHHHHHH-HHcCCCC
Confidence            33334334344444444 4566544

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=97.40  E-value=0.06  Score=51.05  Aligned_cols=109  Identities=6%  Similarity=-0.030  Sum_probs=74.6

Q ss_pred             HHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh-HHH-------HHhhc----c--c-------cccchhHHHHHH
Q psy6665          20 VFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY-TQL-------IMTGQ----I--E-------KSLIPVFCILFY   77 (420)
Q Consensus        20 ~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~-------~~~~r----~--~-------~~~~~~~~~~~l   77 (420)
                      .+.... .++++|++|.+++-+....+.....++++. ++.       -...+    .  .       .+.+...++|+.
T Consensus        73 ~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~  152 (491)
T PF03219_consen   73 ILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVM  152 (491)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHH
Confidence            344555 999999999999988877777777666664 110       00000    0  0       011222345666


Q ss_pred             HHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh
Q psy6665          78 VAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL  128 (420)
Q Consensus        78 ~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~  128 (420)
                      .-+-........-+.+..|.++.+|-.+..++.+.+.++|.++++.+...+
T Consensus       153 aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~  203 (491)
T PF03219_consen  153 AELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYF  203 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666223335789999999999999999999999999999988776655

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=97.30  E-value=3.5e-05  Score=73.90  Aligned_cols=140  Identities=10%  Similarity=0.071  Sum_probs=0.9

Q ss_pred             HHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------------------------
Q psy6665         231 VQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------------------------  280 (420)
Q Consensus       231 ~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------------------------  280 (420)
                      ..+-++.++ ..+.+.+.+..-++.++..++..++.+|..|-+.+-.+.++                             
T Consensus        27 ttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~  106 (539)
T PF03137_consen   27 TTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGN  106 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccc
Confidence            333333477 88889999999999999999999998887665555555444                             


Q ss_pred             -----------------------------hhHHHHHHHHHHHHHHhhc---hhhHHHHHhcccCChhhhhhhHHHHHHHH
Q psy6665         281 -----------------------------KSLIPVFCILFYVAISVIG---MLSIPWTMTAEIFPLEIRGIAQGLTFCLA  328 (420)
Q Consensus       281 -----------------------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~r~~~~g~~~~~~  328 (420)
                                                   .....+.++.+.....+.|   ..++..+|+-|..+++..+...|+.....
T Consensus       107 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~  186 (539)
T PF03137_consen  107 SSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMS  186 (539)
T ss_dssp             ---------------------------------------------SSS--------------------------------
T ss_pred             cccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHh
Confidence                                         0011112222222222222   35666689999999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHh---------------------cCcchHHHHHHHHHHHHHHHHhhhc
Q psy6665         329 HILMFFALQYYPWFKDS---------------------VGGSAMVQWFFALISVISIVYVYIF  370 (420)
Q Consensus       329 ~~~~~~~~~~~g~l~~~---------------------~g~~~~~~~~~~~~~~~~~~~~~~~  370 (420)
                      .+|.++|-.+.+...+.                     .|.||..|++.+.+.++..+..+.+
T Consensus       187 ~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~F  249 (539)
T PF03137_consen  187 ILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFF  249 (539)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             hccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            88888887777655432                     2335666677777777666665433

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.24  E-value=0.023  Score=44.69  Aligned_cols=101  Identities=8%  Similarity=0.098  Sum_probs=69.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc----------hhHHHHHHHHHHHHHHhhchhhHHHHHhccc
Q psy6665         242 NVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE----------KSLIPVFCILFYVAISVIGMLSIPWTMTAEI  311 (420)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (420)
                      .......+......+.+++.+.+.+++|.|+.++++.+.          ..+..++....+.+......+.....++.+.
T Consensus        38 ~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~  117 (156)
T PF05978_consen   38 LGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWTAQGTYLTSY  117 (156)
T ss_pred             ccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHc
Confidence            344555666677788888899999999999999999887          2222223333333333323344445788888


Q ss_pred             CChhhhhhhHHHHHHHHHHHHHHHHHHhHHH
Q psy6665         312 FPLEIRGIAQGLTFCLAHILMFFALQYYPWF  342 (420)
Q Consensus       312 ~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l  342 (420)
                      ..++.+++..++.-.+...+.++|..+.-.+
T Consensus       118 s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen  118 STEETIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             CCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8889999999998888888877776665443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.02  E-value=0.014  Score=54.99  Aligned_cols=136  Identities=15%  Similarity=0.178  Sum_probs=82.0

Q ss_pred             hhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccC-----chhhHhhhccc--------------hhHHHHHHHHHHHHH
Q psy6665         236 DMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYG-----RRSLTMFSQIE--------------KSLIPVFCILFYVAI  295 (420)
Q Consensus       236 ~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-----~~~~~~~~~~~--------------~~~~~~~~~~~~~~~  295 (420)
                      +.|+ +.+........ -.-....++.|.++|.+.     ||..++++.++              ..........++...
T Consensus        19 ~l~ls~~~~~~~~~~~-~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~   97 (433)
T PF03092_consen   19 DLGLSPAQLQRLSSLA-SLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLAS   97 (433)
T ss_pred             HcCCCHHHHHHHHHHH-hCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHH
Confidence            3476 33333333322 223355678999999973     44444444433              111112112222222


Q ss_pred             Hhhch-hhHHHHHhcccC---ChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhcc
Q psy6665         296 SVIGM-LSIPWTMTAEIF---PLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFL  371 (420)
Q Consensus       296 ~~~~~-~~~~~~~~~~~~---p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  371 (420)
                      ++... -.+.-++..|..   |.+ +|...+.......+|+.++..+.|.+.+..+ +...+.+.+.+..+..+...+..
T Consensus        98 ~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~-~~~~f~i~~~~~~l~~~~~~~~~  175 (433)
T PF03092_consen   98 FGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG-PQGVFLISAALPLLMLIVALFLL  175 (433)
T ss_pred             HHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC-CeEEehHHHHHHHHHHHHHHHhh
Confidence            22222 222336666664   444 7888889999999999999999999999988 88888888888777777666666


Q ss_pred             ccC
Q psy6665         372 PET  374 (420)
Q Consensus       372 ~~~  374 (420)
                      +|+
T Consensus       176 ~e~  178 (433)
T PF03092_consen  176 EER  178 (433)
T ss_pred             hhc
Confidence            663

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.99  E-value=0.11  Score=49.11  Aligned_cols=102  Identities=14%  Similarity=0.104  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHhhhccCchhhHhhhccc----------------hh-----------------------
Q psy6665         243 VYLATVLVGVVRMVF-GLLTSQLLRTYGRRSLTMFSQIE----------------KS-----------------------  282 (420)
Q Consensus       243 ~~~~~~~~~~~~~~~-~~~~g~l~d~~g~~~~~~~~~~~----------------~~-----------------------  282 (420)
                      ..+.-....+...+. .++.+++++|++|++..-.....                ..                       
T Consensus        45 i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~  124 (472)
T TIGR00769        45 IPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIA  124 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHH
Confidence            344444443444444 78889999999999775543332                00                       


Q ss_pred             ---HHHHHHHHHHHHHHhhchhh-HHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHH
Q psy6665         283 ---LIPVFCILFYVAISVIGMLS-IPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKD  344 (420)
Q Consensus       283 ---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~  344 (420)
                         .+......+..-.++....+ +.|.+++|++.+++..+.+++.....++|..+++.+..++.+
T Consensus       125 ~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~  190 (472)
T TIGR00769       125 ILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK  190 (472)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               11111222222233333333 778999999999999999999999999999999999888763

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG2563|consensus

Probab=96.94  E-value=0.019  Score=52.46  Aligned_cols=106  Identities=19%  Similarity=0.214  Sum_probs=70.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-------------h---hHHH--HHHHHHHHHHHhhch-h
Q psy6665         241 MNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-------------K---SLIP--VFCILFYVAISVIGM-L  301 (420)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-------------~---~~~~--~~~~~~~~~~~~~~~-~  301 (420)
                      ..+-+...++.+..++..+.+-|+.||+|-|....++...             .   +...  +....-........+ .
T Consensus        79 ~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim  158 (480)
T KOG2563|consen   79 SAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFIL  158 (480)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhh
Confidence            4455777788889999999999999999999988888776             1   1111  111110111111111 1


Q ss_pred             hHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhc
Q psy6665         302 SIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSV  346 (420)
Q Consensus       302 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~  346 (420)
                      .++.-...--||+++|+++..+..+...+|.+++..+-+.+..+.
T Consensus       159 ~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~  203 (480)
T KOG2563|consen  159 GLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS  203 (480)
T ss_pred             ccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence            111122334589999999999999999999999888888777655

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.74  E-value=0.26  Score=46.33  Aligned_cols=38  Identities=11%  Similarity=0.052  Sum_probs=28.6

Q ss_pred             hhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHH
Q psy6665         301 LSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQY  338 (420)
Q Consensus       301 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~  338 (420)
                      .+....+..+..++++|..+-.+....-.+|-.+|..+
T Consensus       390 ~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l  427 (437)
T TIGR00939       390 GSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL  427 (437)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666777888888888888777777777777776655

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=96.67  E-value=0.0038  Score=52.71  Aligned_cols=44  Identities=23%  Similarity=0.350  Sum_probs=32.7

Q ss_pred             cchhhhHhHHHHHHHHHHHHHHHH--hh-h----h--hhHHHHHhHhhhcccc
Q psy6665         101 DLRGALICIGPSITSLGMVIVYAL--GA-V----L--HWRTVAWLSLAYILIP  144 (420)
Q Consensus       101 ~~r~~~~~~~~~~~~lG~~~~~~~--~~-~----~--~wr~~f~~~~~~~~~~  144 (420)
                      ++|+..+.+...+.++|.++.-..  -. -    .  +|++.+.+.+++.++.
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~Ip   54 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIP   54 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678888888889999998776432  22 1    1  7999999888877665

>PF12832 MFS_1_like: MFS_1 like family

Probab=96.65  E-value=0.0068  Score=41.23  Aligned_cols=44  Identities=14%  Similarity=0.124  Sum_probs=37.8

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHH
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGM   45 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~   45 (420)
                      |.+..+.....++..+...+++++ |.++||+||++.++....++
T Consensus        31 Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   31 GLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            567788888899999999999999 99999999998888766554

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=96.63  E-value=0.0056  Score=56.49  Aligned_cols=96  Identities=9%  Similarity=-0.010  Sum_probs=75.8

Q ss_pred             hHHHHhhHHHHHHHHHHHHh-----H------HHHHhhccccccchhHHHHHHHHHHhhcccchhhhhhhhhccCcc---
Q psy6665          36 SLTMFSGLGMAVCMTTSGYY-----T------QLIMTGQIEKSLIPVFCILFYVAISVIAMGPSPAIVYITEVARPD---  101 (420)
Q Consensus        36 ~~l~~~~~~~~~~~~~~~~~-----~------~~~~~~r~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~i~e~~~~~---  101 (420)
                      |+++++.+++.+|.++..++     .      ..++++-            .+.++|.| ..-+...++++|-++++   
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL------------~lia~G~G-~~K~ni~~~~~dq~~~~~~~   68 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGL------------ALIAVGTG-GIKPNISPFGADQYDEDDDS   68 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHH------------HHHHHHHH-CCHHHHHHHHHHCSSTTTTT
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHH------------HHHHhccc-cccccHHHHHHHHhcccchh
Confidence            56788888999998886655     1      3455555            78999999 77787999999999876   


Q ss_pred             chhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccc
Q psy6665         102 LRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIP  144 (420)
Q Consensus       102 ~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~  144 (420)
                      +|.....++..+.++|..++..+..++    +|.+.|.+.++..++.
T Consensus        69 ~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~  115 (372)
T PF00854_consen   69 RRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLA  115 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHH
Confidence            467777888999999999999888887    7999999888776665

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=96.44  E-value=0.29  Score=46.58  Aligned_cols=42  Identities=24%  Similarity=0.214  Sum_probs=38.3

Q ss_pred             HHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHH
Q psy6665         303 IPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKD  344 (420)
Q Consensus       303 ~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~  344 (420)
                      ..|.++.|+++.++..+.+++.....++|..++..+..++.+
T Consensus       164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            568999999999999999999999999999999888888777

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.31  E-value=0.029  Score=38.67  Aligned_cols=54  Identities=17%  Similarity=0.046  Sum_probs=48.9

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY   55 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~   55 (420)
                      +.|.++.....+.+++|+.+|++. .++.++..+++.+..+.+...+..+.+++.
T Consensus        23 ~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~   77 (85)
T PF06779_consen   23 GLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT   77 (85)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778888899999999999999 999999888999999999999999999887

Note that many members are hypothetical proteins.

>KOG3626|consensus

Probab=96.28  E-value=0.017  Score=56.58  Aligned_cols=138  Identities=9%  Similarity=0.084  Sum_probs=90.2

Q ss_pred             CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc------------------------------------
Q psy6665         238 GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE------------------------------------  280 (420)
Q Consensus       238 g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~------------------------------------  280 (420)
                      ++ ..+.+.+...+-++..+...+..+..-|..|-+.+-.+.++                                    
T Consensus       128 ~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~  207 (735)
T KOG3626|consen  128 KISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSL  207 (735)
T ss_pred             CCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCcccc
Confidence            66 66777777777778887777777777777665544333333                                    


Q ss_pred             ------------------------hhHHHHHHHHHHHHHHhhc---hhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHH
Q psy6665         281 ------------------------KSLIPVFCILFYVAISVIG---MLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMF  333 (420)
Q Consensus       281 ------------------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~  333 (420)
                                              .+...++++++.....+.|   ..++..+|+-|...+++.....|+..++..+|-+
T Consensus       208 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPa  287 (735)
T KOG3626|consen  208 SFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPA  287 (735)
T ss_pred             chhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhH
Confidence                                    1111222222222222333   3556668999999988889999999999999998


Q ss_pred             HHHHHhHHHHHh------------------cCcchHHHHHHHHHHHHHHHHhhhccccCCC
Q psy6665         334 FALQYYPWFKDS------------------VGGSAMVQWFFALISVISIVYVYIFLPETHG  376 (420)
Q Consensus       334 ~~~~~~g~l~~~------------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (420)
                      +|-.+.++..+.                  .|.||.-|++.+.+.++..+..+ +.|+...
T Consensus       288 iGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f-~fPk~lp  347 (735)
T KOG3626|consen  288 IGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLF-FFPKELP  347 (735)
T ss_pred             HHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH-hCcccCc
Confidence            888888777642                  23356677777888887777765 4454433

>KOG0637|consensus

Probab=96.28  E-value=0.0022  Score=58.40  Aligned_cols=134  Identities=12%  Similarity=0.156  Sum_probs=86.5

Q ss_pred             hHHHHHHHHHHHHHhcchhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhc----cCchhhHhhhccc
Q psy6665         206 KPLLVITVLFALQQLAGIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRT----YGRRSLTMFSQIE  280 (420)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~~~~~~~~~  280 (420)
                      +.++.........+++ ...-..|.+.|+++.|. ....+..-....+.+++.+++.|..+||    +||||..+.....
T Consensus        32 ~~li~v~~ia~Gvqf~-wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~  110 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFG-WALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL  110 (498)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence            4445555555555654 45566788888888898 5566666677778899999999999997    6888876665544


Q ss_pred             -----------------------hh-HHHHHHHHHHHHHHhh-----chhhHHHHHhcccCChhhhhh-hHHHHHHHHHH
Q psy6665         281 -----------------------KS-LIPVFCILFYVAISVI-----GMLSIPWTMTAEIFPLEIRGI-AQGLTFCLAHI  330 (420)
Q Consensus       281 -----------------------~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~p~~~r~~-~~g~~~~~~~~  330 (420)
                                             .. .....+.....++.-.     .....+-++..|+...+.+.+ +++....+..+
T Consensus       111 ~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~av  190 (498)
T KOG0637|consen  111 LIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAV  190 (498)
T ss_pred             HHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHh
Confidence                                   01 1111111111111111     122233488899887777767 99999999999


Q ss_pred             HHHHHHHHhH
Q psy6665         331 LMFFALQYYP  340 (420)
Q Consensus       331 ~~~~~~~~~g  340 (420)
                      |+.++-.+.+
T Consensus       191 GnvLGY~~g~  200 (498)
T KOG0637|consen  191 GNVLGYALGS  200 (498)
T ss_pred             cceeeeeccc
Confidence            9988755554

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.01  E-value=0.38  Score=44.90  Aligned_cols=144  Identities=15%  Similarity=0.146  Sum_probs=81.4

Q ss_pred             HHHhHHHHHHhh---CCcchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-------------------h--
Q psy6665         226 TIFYAVQFLEDM---GSRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-------------------K--  281 (420)
Q Consensus       226 ~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-------------------~--  281 (420)
                      ..+-.+.++.+.   ++ .-.......-.+..++.++..|...||..|.+....+...                   .  
T Consensus        21 w~Fa~~L~L~~i~p~sL-l~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~   99 (432)
T PF06963_consen   21 WEFAVPLFLISIFPGSL-LPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSS   99 (432)
T ss_pred             HHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            444445555554   22 2233444555677788888889999999998876666555                   0  


Q ss_pred             ---hHHHHHHHHHHHHHHhh-chhhHHHHHhcc------cC--ChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcc
Q psy6665         282 ---SLIPVFCILFYVAISVI-GMLSIPWTMTAE------IF--PLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGS  349 (420)
Q Consensus       282 ---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~--p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~  349 (420)
                         .+....++......... -..........|      +.  +++.....++...-+=..-..++|.+.|.+.+..+ .
T Consensus       100 ~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s-~  178 (432)
T PF06963_consen  100 SQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFAS-P  178 (432)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-H
Confidence               11111111111111111 111121122211      22  33444555555555556778899999999999888 7


Q ss_pred             hHHHHHHHHHHHHHHHHhhhcc
Q psy6665         350 AMVQWFFALISVISIVYVYIFL  371 (420)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~  371 (420)
                      .....+.++..+++...=+.++
T Consensus       179 ~~~~~~i~~~N~~S~~vEy~~l  200 (432)
T PF06963_consen  179 VIAAIFIAGWNLASVFVEYFLL  200 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777777644443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=95.80  E-value=0.68  Score=40.68  Aligned_cols=120  Identities=17%  Similarity=0.153  Sum_probs=78.5

Q ss_pred             HHHhHHHHHHhhCC-c--chHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hh--HHHHHHH
Q psy6665         226 TIFYAVQFLEDMGS-R--MNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KS--LIPVFCI  289 (420)
Q Consensus       226 ~~~~~~~~~~~~g~-~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~--~~~~~~~  289 (420)
                      .....+.+..+.+. .  ...........+...++.++.|.+.||.|||+.+..+...           ..  .......
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (338)
T COG0477          21 LSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLIL  100 (338)
T ss_pred             HHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence            34455555555443 2  3567777888888888889999999999998776655531           11  1222222


Q ss_pred             HHHHHHHhhchhhHHHHHhcccCCh-hhhhhhHHHHHH-HHHHHHHHHHHHhHHHHHh
Q psy6665         290 LFYVAISVIGMLSIPWTMTAEIFPL-EIRGIAQGLTFC-LAHILMFFALQYYPWFKDS  345 (420)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~p~-~~r~~~~g~~~~-~~~~~~~~~~~~~g~l~~~  345 (420)
                      ....+.......+...++..|..|+ +.|+...+.... ...++..++|.+.+.+...
T Consensus       101 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
T COG0477         101 RLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA  158 (338)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222222223456667889999997 678888888888 5777888888777766655

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=95.62  E-value=2  Score=40.31  Aligned_cols=111  Identities=5%  Similarity=-0.100  Sum_probs=80.0

Q ss_pred             HHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh-H--H-----HHHhhc-----cc---------cccchhHHH
Q psy6665          18 RMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY-T--Q-----LIMTGQ-----IE---------KSLIPVFCI   74 (420)
Q Consensus        18 g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~--~-----~~~~~r-----~~---------~~~~~~~~~   74 (420)
                      +.++..++ +++.+++.|.+++-.-...+....+++++. +  .     -....|     ..         .+-+...++
T Consensus        74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~  153 (509)
T COG3202          74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLF  153 (509)
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHH
Confidence            45555667 999999999999999888888888888876 2  0     001111     00         122334455


Q ss_pred             HHHHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh
Q psy6665          75 LFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL  128 (420)
Q Consensus        75 ~~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~  128 (420)
                      |++.=+-..-.....-+....|.+..+|-.|..+..+.+.+++.++++.+..++
T Consensus       154 Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~  207 (509)
T COG3202         154 YIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWL  207 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666233335678899999999999999999999999999998887776

>PRK03612 spermidine synthase; Provisional

Probab=94.73  E-value=0.59  Score=45.12  Aligned_cols=122  Identities=13%  Similarity=0.089  Sum_probs=63.1

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh-HHHHHhhccccccchhHHHHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY-TQLIMTGQIEKSLIPVFCILFYV   78 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~l~   78 (420)
                      +|.+...+..++++++.|..+|+.. +++.++--|+.. ..-..+ ++...+.... +...-..  .........+.++.
T Consensus        45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i-~l~~~~~~~ll~~~~~~~--~~~~~~~~~~~~~~  120 (521)
T PRK03612         45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLL-ALLGGLSALILYAAFAFQ--GLSRLLLYVLVLLI  120 (521)
T ss_pred             hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence            3667778899999999999999999 887644333322 111111 1111111111 1000000  00011112234556


Q ss_pred             HHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh
Q psy6665          79 AISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL  128 (420)
Q Consensus        79 G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~  128 (420)
                      ++..| ...|....+..+.. .++-+...|-......+|.++|.++.+++
T Consensus       121 ~~l~G-~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~v  168 (521)
T PRK03612        121 GLLIG-MEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFL  168 (521)
T ss_pred             HHHHH-HHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHH
Confidence            77777 55554444443322 22235666777777777777777776654

>KOG1237|consensus

Probab=94.65  E-value=3.6  Score=40.22  Aligned_cols=133  Identities=11%  Similarity=-0.013  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHHH-HHHHHh-hcchhHHHHhhHHHHHHHHHHHHh--HHHHHhh----------ccccc-c-chhH-H
Q psy6665          11 TVLVGVVRMVFGLLT-SQLLRT-YGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTG----------QIEKS-L-IPVF-C   73 (420)
Q Consensus        11 ~~~~~~~g~~~~~~~-g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~----------r~~~~-~-~~~~-~   73 (420)
                      .+..+.--....++. ++++|- +||=+++.++.++..++.++..+.  ...+...          ....+ . ..++ .
T Consensus        78 ~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~  157 (571)
T KOG1237|consen   78 NVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYG  157 (571)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHH
Confidence            333333334444566 999996 789899999999999987666555  2222211          01111 1 1111 2


Q ss_pred             HHHHHHHHhhcccchhhhhhhhhccC---ccc-h--hhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhccc
Q psy6665          74 ILFYVAISVIAMGPSPAIVYITEVAR---PDL-R--GALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILI  143 (420)
Q Consensus        74 ~~~l~G~~~~~~~~~~~~~~i~e~~~---~~~-r--~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~  143 (420)
                      -+-+..+|.| ..-+...++-+|=++   +++ +  ...+.++....++|..++..+..+.    +|.+.|.+..+...+
T Consensus       158 ~l~lia~G~g-g~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~l  236 (571)
T KOG1237|consen  158 ALYLIALGAG-GIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNAL  236 (571)
T ss_pred             HHHHheeccC-CCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHH
Confidence            3556667888 555557888888887   322 2  3566677777888888887766665    788877666555444


Q ss_pred             c
Q psy6665         144 P  144 (420)
Q Consensus       144 ~  144 (420)
                      .
T Consensus       237 a  237 (571)
T KOG1237|consen  237 A  237 (571)
T ss_pred             H
Confidence            3

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=94.63  E-value=4  Score=38.40  Aligned_cols=44  Identities=18%  Similarity=0.213  Sum_probs=38.4

Q ss_pred             hHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHh
Q psy6665         302 SIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDS  345 (420)
Q Consensus       302 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~  345 (420)
                      -+.|..+.|++..++..+.+++.+...+++..++..+..++.++
T Consensus       167 ~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~  210 (509)
T COG3202         167 LLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH  210 (509)
T ss_pred             HHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            35678899999999999999999999999999998888887664

>KOG3098|consensus

Probab=94.16  E-value=1.3  Score=41.60  Aligned_cols=111  Identities=16%  Similarity=0.092  Sum_probs=76.8

Q ss_pred             HHHHHHHHHH-HHHH---HhhcchhHHHHhhHHHHHHHHHHHHhHHHHHhhcc--------ccccchhHHHHHHHHHHhh
Q psy6665          16 VVRMVFGLLT-SQLL---RTYGRRSLTMFSGLGMAVCMTTSGYYTQLIMTGQI--------EKSLIPVFCILFYVAISVI   83 (420)
Q Consensus        16 ~~g~~~~~~~-g~l~---dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~r~--------~~~~~~~~~~~~l~G~~~~   83 (420)
                      .+|..++... +.+.   +++||++.+.++.++..++.++....+..-.-.+.        .........+.++.|++.+
T Consensus       289 g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~  368 (461)
T KOG3098|consen  289 GLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDA  368 (461)
T ss_pred             hHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHH
Confidence            3444444455 5555   56999999999999988888877665111111221        1133444557899999999


Q ss_pred             cccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh
Q psy6665          84 AMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL  128 (420)
Q Consensus        84 ~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~  128 (420)
                       +.....+.++.+.+ +++|..+.++.-.-..++..++.......
T Consensus       369 -~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~  411 (461)
T KOG3098|consen  369 -CFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL  411 (461)
T ss_pred             -HHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence             88888999999999 67788999998887777776665554443

>PRK03612 spermidine synthase; Provisional

Probab=92.92  E-value=7.6  Score=37.64  Aligned_cols=49  Identities=6%  Similarity=0.093  Sum_probs=34.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhHHHH-HhcCcchHHHHHHHHHHHHHHHH
Q psy6665         317 RGIAQGLTFCLAHILMFFALQYYPWFK-DSVGGSAMVQWFFALISVISIVY  366 (420)
Q Consensus       317 r~~~~g~~~~~~~~~~~~~~~~~g~l~-~~~g~~~~~~~~~~~~~~~~~~~  366 (420)
                      -+...|-......+|+++|+++.+++. ...| ......+.+.+.++.++.
T Consensus       143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG-~~~t~~~~a~l~~~~a~~  192 (521)
T PRK03612        143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLG-LIRTAALTGSLNLLAALV  192 (521)
T ss_pred             hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHH
Confidence            456778888899999999999988755 4778 555555555555554443

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=92.75  E-value=0.44  Score=32.92  Aligned_cols=56  Identities=18%  Similarity=0.004  Sum_probs=46.4

Q ss_pred             hhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhcc
Q psy6665         224 YITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQI  279 (420)
Q Consensus       224 ~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~  279 (420)
                      +.+...+|.+.++.++ ..+.++..+.+.++.++|.+...++.++.++++.+..+.+
T Consensus         9 FayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~   65 (85)
T PF06779_consen    9 FAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLL   65 (85)
T ss_pred             HHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            3455678888888888 8899999999999999999999999998777777666543

Note that many members are hypothetical proteins.

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=92.24  E-value=1.1  Score=41.37  Aligned_cols=74  Identities=12%  Similarity=0.103  Sum_probs=57.4

Q ss_pred             HHHhhchhhHHHHHhcccCChh---hhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhh
Q psy6665         294 AISVIGMLSIPWTMTAEIFPLE---IRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVY  368 (420)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~p~~---~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  368 (420)
                      .....+.=|...++..|.++++   .|...+.+.....++|..+++.+.+++.++.| +...|.+.++..+++.+..+
T Consensus        44 a~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~-~~~~f~i~~~~~~~~~~~f~  120 (372)
T PF00854_consen   44 AVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYG-WFLGFGIPAIGMLLALIVFL  120 (372)
T ss_dssp             HHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS--HHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccc-hhhhhhHHHHHHHHHHHHHH
Confidence            3334455566678888888765   56778889999999999999999999999999 88888888877777766543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=92.06  E-value=0.67  Score=42.65  Aligned_cols=55  Identities=22%  Similarity=0.233  Sum_probs=48.7

Q ss_pred             HHHHHHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh
Q psy6665          73 CILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL  128 (420)
Q Consensus        73 ~~~~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~  128 (420)
                      .+.+..|+..| ..++.....+.|-.|+++|-.+++....+.++|..++.+++-.+
T Consensus       340 ~lif~eGLlGG-a~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  340 VLIFYEGLLGG-ASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHhhh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            35588999988 77777888899999999999999999999999999999988765

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG2601|consensus

Probab=92.05  E-value=0.43  Score=42.82  Aligned_cols=37  Identities=16%  Similarity=0.149  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHhhcchhHHHHhhHHHHHHHHHHHHh
Q psy6665          19 MVFGLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSGYY   55 (420)
Q Consensus        19 ~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~   55 (420)
                      ..++.++|...|+..|+|++...+.+.=++.++++-.
T Consensus        77 lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vaggl  113 (503)
T KOG2601|consen   77 LVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGL  113 (503)
T ss_pred             HhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHH
Confidence            3445555999999999999999998888887777665

>KOG3097|consensus

Probab=90.82  E-value=12  Score=33.52  Aligned_cols=96  Identities=11%  Similarity=0.128  Sum_probs=66.2

Q ss_pred             HHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh-HHHHHhhccccccchhHHHHHHHHHHhhcccchhhhhh
Q psy6665          16 VVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY-TQLIMTGQIEKSLIPVFCILFYVAISVIAMGPSPAIVY   93 (420)
Q Consensus        16 ~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~   93 (420)
                      ....+.++++ +.+..++|-|.++.++...+...-...-.- +..++..-            ...|++.+ .....--+|
T Consensus        68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~Nl~pr~~tlVPa~------------~~~G~aa~-p~W~SkgtY  134 (390)
T KOG3097|consen   68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAANLEPRYETLVPAG------------LVLGMAAG-PIWASKGTY  134 (390)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcchhHHhhccHH------------Hhhccccc-cccccCcce
Confidence            4556677888 999999999999999988887655544444 88888888            99999999 666555666


Q ss_pred             hhhccCc--cch-------------hhhHhHHHHHHHHHHHHHHHH
Q psy6665          94 ITEVARP--DLR-------------GALICIGPSITSLGMVIVYAL  124 (420)
Q Consensus        94 i~e~~~~--~~r-------------~~~~~~~~~~~~lG~~~~~~~  124 (420)
                      +++.-..  ++|             +....++....-.|.+++.++
T Consensus       135 lT~~g~~ya~~~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli  180 (390)
T KOG3097|consen  135 LTPMGQNYANQRGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLI  180 (390)
T ss_pred             ecHHHHHHHHhhhhhccCceeeeehhHHHHHHHHHHHHHHHHHHHH
Confidence            6655432  223             334445555555665555544

>KOG4332|consensus

Probab=89.10  E-value=0.89  Score=39.00  Aligned_cols=38  Identities=18%  Similarity=0.218  Sum_probs=28.6

Q ss_pred             CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHh
Q psy6665         238 GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTM  275 (420)
Q Consensus       238 g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~  275 (420)
                      |+ ..+.+..........++...+.|-+.||.|||+..+
T Consensus        68 gFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracv  106 (454)
T KOG4332|consen   68 GFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACV  106 (454)
T ss_pred             CccCCccceeeecccchHHHHHHHHHHHHhhhcccccee
Confidence            66 677776666655666777778889999999997643

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=89.10  E-value=0.14  Score=45.75  Aligned_cols=93  Identities=14%  Similarity=0.051  Sum_probs=2.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcc-CchhhHhhhccc-------------h-h---------HHHHHHHHHHHHHHhhch
Q psy6665         245 LATVLVGVVRMVFGLLTSQLLRTY-GRRSLTMFSQIE-------------K-S---------LIPVFCILFYVAISVIGM  300 (420)
Q Consensus       245 ~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~-------------~-~---------~~~~~~~~~~~~~~~~~~  300 (420)
                      .....+.++..+|+.+.++..-+. .+|.+. ...+.             . .         .....++.....++.-|+
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGy  264 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGY  264 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccch
Confidence            346678899999999888743221 233332 22222             1 0         001112222223333333


Q ss_pred             -hhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHH
Q psy6665         301 -LSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQY  338 (420)
Q Consensus       301 -~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~  338 (420)
                       .+....+..+..++++|..+-.+....-..|-.+|..+
T Consensus       265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l  303 (309)
T PF01733_consen  265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL  303 (309)
T ss_dssp             --HHHH---------------------------------
T ss_pred             hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             55666777788888888777766666666666666544

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG1479|consensus

Probab=88.69  E-value=15  Score=34.01  Aligned_cols=18  Identities=11%  Similarity=-0.033  Sum_probs=10.4

Q ss_pred             hcchhhHHHhHHHHHHhh
Q psy6665         220 LAGIYITIFYAVQFLEDM  237 (420)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~  237 (420)
                      ....+.+.+-.+++.++.
T Consensus        31 LlpWN~fiTa~~y~~~~~   48 (406)
T KOG1479|consen   31 LLPWNMFITASDYYYYRF   48 (406)
T ss_pred             ccchHhhhccHHHHHhhc
Confidence            334556666666666654

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=88.52  E-value=8.3  Score=36.40  Aligned_cols=13  Identities=15%  Similarity=0.549  Sum_probs=6.9

Q ss_pred             HHHhcccCChhhhh
Q psy6665         305 WTMTAEIFPLEIRG  318 (420)
Q Consensus       305 ~~~~~~~~p~~~r~  318 (420)
                      ..+.+ .+|++..+
T Consensus       128 ~gla~-~fp~~~~~  140 (437)
T TIGR00939       128 FGLAG-VFPSTYSS  140 (437)
T ss_pred             hhhcc-cCCHHHHH
Confidence            35544 56766543

>KOG1237|consensus

Probab=86.61  E-value=16  Score=35.86  Aligned_cols=143  Identities=14%  Similarity=0.143  Sum_probs=82.7

Q ss_pred             hhhHHHhHHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhcc-CchhhHhhhccc------------------h
Q psy6665         223 IYITIFYAVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTY-GRRSLTMFSQIE------------------K  281 (420)
Q Consensus       223 ~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~------------------~  281 (420)
                      ++.+..-+..|+... +. ...+...............+++++++|.+ ||-+++.++.++                  .
T Consensus        53 ~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p  132 (571)
T KOG1237|consen   53 FFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLP  132 (571)
T ss_pred             HhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence            333333334444333 54 44555556666666777788999999986 776666666555                  0


Q ss_pred             ---------------h--HHHHHHHHHHHHH-HhhchhhHHHHHhcccCC----hhhh--hhhHHHHHHHHHHHHHHHHH
Q psy6665         282 ---------------S--LIPVFCILFYVAI-SVIGMLSIPWTMTAEIFP----LEIR--GIAQGLTFCLAHILMFFALQ  337 (420)
Q Consensus       282 ---------------~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p----~~~r--~~~~g~~~~~~~~~~~~~~~  337 (420)
                                     .  ...++...+.... ...+.-|...++-+|-++    .+.+  ...+....+..+.|..++..
T Consensus       133 ~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t  212 (571)
T KOG1237|consen  133 FMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQT  212 (571)
T ss_pred             ccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHH
Confidence                           0  0011111111111 222334455567777776    2223  36677888888888888888


Q ss_pred             HhHHHHHhcCcchHHHHHHHHHHHHHHHH
Q psy6665         338 YYPWFKDSVGGSAMVQWFFALISVISIVY  366 (420)
Q Consensus       338 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  366 (420)
                      +.-++-++.| |...+.+..++..++.++
T Consensus       213 ~~vyiq~~~~-w~lgf~i~~~~~~lai~i  240 (571)
T KOG1237|consen  213 VLVYIQDNVG-WKLGFGIPTVLNALAILI  240 (571)
T ss_pred             HHHhhhhccc-ceeeccHHHHHHHHHHHH
Confidence            8877767777 766666666655555544

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.32  E-value=4  Score=29.22  Aligned_cols=33  Identities=15%  Similarity=0.129  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHh-hcchhHHHHhhHHHHHH
Q psy6665          16 VVRMVFGLLTSQLLRT-YGRRSLTMFSGLGMAVC   48 (420)
Q Consensus        16 ~~g~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~   48 (420)
                      .-|.++|..+||+.|| +|-+|+.++..++.+.+
T Consensus        53 IsGilVGa~iG~llD~~agTsPwglIv~lllGf~   86 (116)
T COG5336          53 ISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFG   86 (116)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            4455556555999999 56788777665554443

>KOG3574|consensus

Probab=80.98  E-value=20  Score=32.95  Aligned_cols=34  Identities=12%  Similarity=0.005  Sum_probs=20.4

Q ss_pred             HHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHh
Q psy6665         306 TMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYY  339 (420)
Q Consensus       306 ~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~  339 (420)
                      .+.-.+..+++.|-+..........|.+++-.++
T Consensus       156 gwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~if  189 (510)
T KOG3574|consen  156 GWALTMLSRENLGYASTCQSVGQTAGYFLGNVVF  189 (510)
T ss_pred             HHHHHhcCHhhcCchhHHHHHHHhhhHHhhccee
Confidence            4455566667667666666666666666654443

>KOG1479|consensus

Probab=80.14  E-value=51  Score=30.63  Aligned_cols=35  Identities=9%  Similarity=-0.067  Sum_probs=19.8

Q ss_pred             hhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHH
Q psy6665         301 LSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFA  335 (420)
Q Consensus       301 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~  335 (420)
                      ..+...+..+.+|++++-.+-.+....-..|-+.|
T Consensus       361 tsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G  395 (406)
T KOG1479|consen  361 TSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALG  395 (406)
T ss_pred             hhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHh
Confidence            45555777888887776554444444433443343

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	420
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		1e-18

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 105/460 (22%), Positives = 185/460 (40%), Gaps = 81/460 (17%)
Query: 3   SRMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRS-------LTMFSGLGMAVCMTTSGYY 55
           S +   +A+ L+G +  + G L       +GRR        L   SG+G A        +
Sbjct: 55  SLLGFCVASALIGCI--IGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSA--------W 104
Query: 56  TQLIMTGQIEKSLIPVFC------ILFYVAISVIAMGPSPAI--VYITEVARPDLRGALI 107
            +L  T     + +PV+        + Y  I  I +G +  +  +YI E+A   +RG L+
Sbjct: 105 PELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLV 164
Query: 108 CIGPSITSLGMVIVYAL-------GAVLHWRTVAW--------------LSLAYILIPSP 146
                    G ++VY +       G      T  W              L L Y +  SP
Sbjct: 165 SFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESP 224
Query: 147 VWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIK 206
            WL+++G+  QA   L+ +  N    +   QE+K  +S    +    RL+       G+ 
Sbjct: 225 RWLMSRGKQEQAEGILRKIMGNTLATQ-AVQEIK--HSLDHGRKTGGRLLMF-----GVG 276
Query: 207 PLLVITVLFALQQLAGIYITIFYAVQFLEDMGSRMNV-YLATVLVGVVRMVFGLLTSQLL 265
            +++  +L   QQ  GI + ++YA +  + +G+  ++  L T++VGV+ + F +L    +
Sbjct: 277 VIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTV 336
Query: 266 RTYGRRSL----------------TMFSQIEKSLIPVFCILFYVAISVIGMLSIPWTMTA 309
             +GR+ L                T F      ++ +  +LFYVA   +    + W + +
Sbjct: 337 DKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLS 396
Query: 310 EIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQ-----WFFALXXXXXX 364
           EIFP  IRG A  +      +  +F    +P    +    A        W +        
Sbjct: 397 EIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAA 456
Query: 365 XXXXXFLPETHGRTLLEIEEYFETSCVYACSKKRRASAAI 404
                F+PET G+TL E+E  +E       +KK + +A +
Sbjct: 457 LFMWKFVPETKGKTLEELEALWEPE-----TKKTQQTATL 491
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	420
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 3e-05
 Identities = 58/410 (14%), Positives = 119/410 (29%), Gaps = 100/410 (24%)

Query: 17  VRMVFGLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSGYYTQLIMTGQIEKSLIPVFCILF 76
              +F  L      +     +  F    +        +    I T Q + S++     ++
Sbjct: 64  TLRLFWTL-----LSKQEEMVQKFVEEVLR---INYKFLMSPIKTEQRQPSMMTR---MY 112

Query: 77  YVAISVIAMGPSPAIVYITEVARPD----LRGALICIGPS--ITSLGMV----IVYALGA 126
                 +         Y   V+R      LR AL+ + P+  +   G++       AL  
Sbjct: 113 IEQRDRLYNDNQVFAKY--NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170

Query: 127 VLHWRT-------VAWLSLAYILIPSPVWLLNKGRANQALKSLKYLARNYKEVKNKEQEL 179
            L ++        + WL+L     P  V           L+ L+ L   Y+   N     
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETV-----------LEMLQKL--LYQIDPNWTSRS 217

Query: 180 KKMNSTKEN-QSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIY-ITIFYAVQFLEDM 237
              ++ K    S+ A L +++        LLV         L  +     + A  F  ++
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLV---------LLNVQNAKAWNA--F--NL 264

Query: 238 GSRM-----NVYLATVLVGVVRMVFGLLTSQLLRTYGRR-SLTMFSQI----EKSLIPVF 287
             ++        +   L         L       T       ++  +      + L    
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISL--DHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322

Query: 288 CILFYVAISVIGMLSIPWTMTAEIFP-LEIRGIAQGLTFCLAHIL------MFFALQYYP 340
                  +S+I         T + +  +    +   +   L  +       MF  L  +P
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382

Query: 341 WFKDSVGGSAMVQWFFALIS--VISIVY-------VYIFLPETHGRTLLE 381
               S             I   ++S+++       V + + + H  +L+E
Sbjct: 383 ---PSA-----------HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	420
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.98
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.96
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.95
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.93
2xut_A	524	Proton/peptide symporter family protein; transport	99.91
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.44
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.42
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.38
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.38
2xut_A	524	Proton/peptide symporter family protein; transport	99.35
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.1
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.96

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=1.6e-40  Score=316.77  Aligned_cols=361  Identities=22%  Similarity=0.412  Sum_probs=281.6

Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHH------------------h--HHHHHhhcccc
Q psy6665           8 YLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGY------------------Y--TQLIMTGQIEK   66 (420)
Q Consensus         8 ~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~------------------~--~~~~~~~r~~~   66 (420)
                      ..+..+.+.+|.++|+++ |+++||+|||++++++.+++.++++++++                  +  +++++++|   
T Consensus        57 ~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R---  133 (491)
T 4gc0_A           57 LGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYR---  133 (491)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHH---
Confidence            456778899999999999 99999999999999999999999999984                  4  88999999   


Q ss_pred             ccchhHHHHHHHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh------------hhHHHH
Q psy6665          67 SLIPVFCILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL------------HWRTVA  134 (420)
Q Consensus        67 ~~~~~~~~~~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~------------~wr~~f  134 (420)
                               +++|++.| ...+....+++|+.|+++|++..++.+.+..+|.++++.++...            +||+.+
T Consensus       134 ---------~l~G~g~G-~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (491)
T 4gc0_A          134 ---------IIGGIGVG-LASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMF  203 (491)
T ss_dssp             ---------HHHHHHHH-HHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHH
T ss_pred             ---------HHHHHHHH-HHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHh
Confidence                     99999999 77777999999999999999999999999999999988877553            588887


Q ss_pred             HhHhhhcccc---------ccceeeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccc
Q psy6665         135 WLSLAYILIP---------SPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGI  205 (420)
Q Consensus       135 ~~~~~~~~~~---------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (420)
                      .+..++.++.         +|+|+..+++.+++++.+++.+.++...++..+..   +..++  ++......   ....+
T Consensus       204 ~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~---~~~~~  275 (491)
T 4gc0_A          204 ASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIK---HSLDH--GRKTGGRL---LMFGV  275 (491)
T ss_dssp             HTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH--HHHHTTHH---HHSCC
T ss_pred             hhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHH---HHHHh--hhhhhhHH---HHhcc
Confidence            7766655443         89999999999998887776655433322211111   00000  11111111   11223


Q ss_pred             hHHHHHHHHHHHHHhcchhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc----
Q psy6665         206 KPLLVITVLFALQQLAGIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE----  280 (420)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~----  280 (420)
                      ++.........+.+..+.+.+.+|.+.+.+..+. ..+........++..+++.++++++.||+|||+.+..+...    
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~  355 (491)
T 4gc0_A          276 GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIG  355 (491)
T ss_dssp             THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHH
Confidence            4555666666777777888899999999888766 55666677778899999999999999999999887665544    


Q ss_pred             ------------hhHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHh---
Q psy6665         281 ------------KSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDS---  345 (420)
Q Consensus       281 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~---  345 (420)
                                  ..+.......++..++..++.++.+.+.+|++|++.|+++.|+.+..+++++++++.+.+.+.+.   
T Consensus       356 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~  435 (491)
T 4gc0_A          356 MFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL  435 (491)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        22334444555566667778889899999999999999999999999999999999988876543   


Q ss_pred             ---cCcchHHHHHHHHHHHHHHHHhhhccccCCCCChHHHHHHhcccc
Q psy6665         346 ---VGGSAMVQWFFALISVISIVYVYIFLPETHGRTLLEIEEYFETSC  390 (420)
Q Consensus       346 ---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (420)
                         .+ ....+++++++++++.++.++++||||++++||+++.+++++
T Consensus       436 ~~~~~-~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~  482 (491)
T 4gc0_A          436 VAHFH-NGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPET  482 (491)
T ss_dssp             HHHHT-TCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC---
T ss_pred             Hhhhh-hhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCC
Confidence               33 456788999999999999999999999999999988876543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=6e-32  Score=254.66  Aligned_cols=343  Identities=12%  Similarity=0.027  Sum_probs=245.6

Q ss_pred             CccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHH----h--HHHHHhhccccccchhHHHH
Q psy6665           3 SRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGY----Y--TQLIMTGQIEKSLIPVFCIL   75 (420)
Q Consensus         3 ~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----~--~~~~~~~r~~~~~~~~~~~~   75 (420)
                      .+..+.....+++.++..++.++ |+++||+|||++++.+.++.+++.+++++    +  ++.+++.|            
T Consensus        59 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------  126 (451)
T 1pw4_A           59 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLL------------  126 (451)
T ss_dssp             TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHH------------
T ss_pred             ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHH------------
Confidence            35567788899999999999999 99999999999999999999999999999    7  88899999            


Q ss_pred             HHHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----h-hHHHHHhHhhhcccc-cccee
Q psy6665          76 FYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----H-WRTVAWLSLAYILIP-SPVWL  149 (420)
Q Consensus        76 ~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~-wr~~f~~~~~~~~~~-~~~~l  149 (420)
                      +++|++.+ ...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+    + ||+.|++.+++.++. ...++
T Consensus       127 ~l~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~  205 (451)
T 1pw4_A          127 FLCGWFQG-MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFA  205 (451)
T ss_dssp             HHHHHHHH-HTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhh-hccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999 77887999999999999999999999999999999999988764    7 999999988776554 11222


Q ss_pred             eecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHh
Q psy6665         150 LNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFY  229 (420)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (420)
                      ..++++++..      ..+.++.+.. .+   ++.+++++++.+.++... ....+++.++...+..+...........+
T Consensus       206 ~~~~~~~~~~------~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (451)
T 1pw4_A          206 MMRDTPQSCG------LPPIEEYKND-YP---DDYNEKAEQELTAKQIFM-QYVLPNKLLWYIAIANVFVYLLRYGILDW  274 (451)
T ss_dssp             HCCCSSTTTC------CCSCTTTCCC-----------------CCTHHHH-HHTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCCHhhcC------CCChhhhccc-cc---ccchhhhhcccccccchH-HHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222211100      0000000000 00   000000011111111111 11222333444444444444456778889


Q ss_pred             HHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhcc--CchhhHhhhccc-------------h-hHHHHHHHHH
Q psy6665         230 AVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTY--GRRSLTMFSQIE-------------K-SLIPVFCILF  291 (420)
Q Consensus       230 ~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~-------------~-~~~~~~~~~~  291 (420)
                      .|.++++. |. ..+.+.......++.+++.++.+++.||+  +||+.+..+..+             . +.........
T Consensus       275 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (451)
T 1pw4_A          275 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMI  354 (451)
T ss_dssp             HHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHH
Confidence            99999884 77 67788888899999999999999999999  998876554333             1 2222223333


Q ss_pred             HHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHH-HHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhc
Q psy6665         292 YVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHI-LMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIF  370 (420)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  370 (420)
                      ..+....+..+....+..|.+|++.|+++.|+.+...++ +..++|.+.|.+.+..| +...+++.+++.+++.++.+..
T Consensus       355 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          355 VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHH
Confidence            333333344556668999999999999999999999999 99999999999999998 8888888888887777766543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.98  E-value=1.2e-30  Score=244.88  Aligned_cols=322  Identities=11%  Similarity=0.038  Sum_probs=235.5

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHH---HHh--HHHHHhhccccccchhHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTS---GYY--TQLIMTGQIEKSLIPVFCI   74 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~--~~~~~~~r~~~~~~~~~~~   74 (420)
                      +|.+..+.....+.+.++..++.++ |+++||+|||++++.+.++.+++.+++   .++  ++.+++.|           
T Consensus        56 ~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------  124 (438)
T 3o7q_A           56 FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGL-----------  124 (438)
T ss_dssp             SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-----------
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHH-----------
Confidence            4677888899999999999999999 999999999999999999999999998   666  99999999           


Q ss_pred             HHHHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhhh-------------------------
Q psy6665          75 LFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVLH-------------------------  129 (420)
Q Consensus        75 ~~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~-------------------------  129 (420)
                       ++.|++.+ ...+...+++.|++|+++|++++++.+.+.++|..+++.++..+.                         
T Consensus       125 -~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (438)
T 3o7q_A          125 -FIIAAGLG-CLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKH  202 (438)
T ss_dssp             -HHHHHHHH-HHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHH
T ss_pred             -HHHHhhHH-HhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhh
Confidence             99999999 777779999999999999999999999999999999999988762                         


Q ss_pred             -----hHHHHHhHhhhccccccceeeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhcccc
Q psy6665         130 -----WRTVAWLSLAYILIPSPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATG  204 (420)
Q Consensus       130 -----wr~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (420)
                           ||+.|++.+++.++....++..+.+..+              .+.       ++.+++++.+.+.++.++ ++. 
T Consensus       203 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~--------------~~~-------~~~~~~~~~~~~~~~~~~-~~~-  259 (438)
T 3o7q_A          203 SLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQ--------------SDN-------HSDAKQGSFSASLSRLAR-IRH-  259 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCT--------------TTC-------CCCSSTTSHHHHHHHHTT-CSH-
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccc--------------ccc-------cccccccchhhhHHHHHh-ChH-
Confidence                 9999987776665541111111111000              000       011111122233444443 222 


Q ss_pred             chHHHHHHHHHHHHHhcchhhHHHhHHHH-HHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-
Q psy6665         205 IKPLLVITVLFALQQLAGIYITIFYAVQF-LEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-  280 (420)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-  280 (420)
                          ++...+..+...........+.|.| +++. |. ..+.+.......++.+++.++.+++.||++||+.+..+..+ 
T Consensus       260 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~  335 (438)
T 3o7q_A          260 ----WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIA  335 (438)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence                2222222222333356677888999 8876 87 77788888889999999999999999999999988777665 


Q ss_pred             ----------hhHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcch
Q psy6665         281 ----------KSLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSA  350 (420)
Q Consensus       281 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~  350 (420)
                                ......... ...+.+.....+..+++..|.+|++ ++.+.++.. ...+++.++|.+.|.+.+..|++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~  412 (438)
T 3o7q_A          336 MALCLISAFAGGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIP  412 (438)
T ss_dssp             HHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSG
T ss_pred             HHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchH
Confidence                      222222222 3333333345677788888999977 888888877 677999999999999999988666


Q ss_pred             HHHHHHHHHHHHHHH
Q psy6665         351 MVQWFFALISVISIV  365 (420)
Q Consensus       351 ~~~~~~~~~~~~~~~  365 (420)
                      ..+.+.+++.++..+
T Consensus       413 ~~~~~~~~~~~~~~~  427 (438)
T 3o7q_A          413 TAELIPALCFAVIFI  427 (438)
T ss_dssp             GGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            666665544444433

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.96  E-value=1.6e-28  Score=233.86  Aligned_cols=357  Identities=10%  Similarity=-0.001  Sum_probs=226.9

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHh-hcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRT-YGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILF   76 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~   76 (420)
                      +|.+..+.....+.+.++..+++++ |+++|| +|||+++..+.++.+++.++++++  ++.+++.|            +
T Consensus        49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~  116 (491)
T 4aps_A           49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSI------------I  116 (491)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHH------------H
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH------------H
Confidence            3667788889999999999999999 999999 899999999999999999999888  88999999            9


Q ss_pred             HHHHHhhcccchhhhhhhhhccCccc--hhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhccccc-----
Q psy6665          77 YVAISVIAMGPSPAIVYITEVARPDL--RGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIPS-----  145 (420)
Q Consensus        77 l~G~~~~~~~~~~~~~~i~e~~~~~~--r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~~-----  145 (420)
                      ++|++.+ ...+...+++.|++|+++  |+.+.++++.+.++|..++|.+++.+    +||+.|++.++..++..     
T Consensus       117 l~g~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  195 (491)
T 4aps_A          117 LIIIGTG-FLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYF  195 (491)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-hccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999 777779999999999988  77788889999999999999988876    89999998866655441     


Q ss_pred             --cceeeecC-------cHHHHHHHHHH---------------HhcchhhhhhhHHHHhhhcc-c----hhhhhhhhHHH
Q psy6665         146 --PVWLLNKG-------RANQALKSLKY---------------LARNYKEVKNKEQELKKMNS-T----KENQSLSARLI  196 (420)
Q Consensus       146 --~~~l~~~~-------~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~  196 (420)
                        +.+...++       +.++.++..+.               ...+..+.+........... .    .....+....+
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (491)
T 4aps_A          196 GGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVT  275 (491)
T ss_dssp             HHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             hCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhccccc
Confidence              11111000       11111111111               00000000000000000000 0    00000000000


Q ss_pred             HHhhccccchHHHHHHHHHHHHHhcchhhHHHhHHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhH
Q psy6665         197 KMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLT  274 (420)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~  274 (420)
                      ... +++...  .....+..............+.|.+.++. +. ..+.+.......+..+++.++.+++.||++||+..
T Consensus       276 ~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~  352 (491)
T 4aps_A          276 STE-HLRVVS--YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPS  352 (491)
T ss_dssp             -------CTT--HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred             HHH-HHHHHH--HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCC
Confidence            000 111111  11111111122222344555667777664 44 35566677778888899999999999999988543


Q ss_pred             h-----hhccc-----------h---------hHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHH
Q psy6665         275 M-----FSQIE-----------K---------SLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAH  329 (420)
Q Consensus       275 ~-----~~~~~-----------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~  329 (420)
                      .     .+..+           .         +........++.+.......+..+++..|.+|++.|+++.|+.+....
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  432 (491)
T 4aps_A          353 SPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSS  432 (491)
T ss_dssp             CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            3     23222           1         222233333333333333466778999999999999999999999999


Q ss_pred             HHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhccccCC
Q psy6665         330 ILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFLPETH  375 (420)
Q Consensus       330 ~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (420)
                      +|..++|.+.+.+.+. + +...+.+.++++++..++.++..++.+
T Consensus       433 ~g~~i~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (491)
T 4aps_A          433 VGSALNAQLVTLYNAK-S-EVAYFSYFGLGSVVLGIVLVFLSKRIQ  476 (491)
T ss_dssp             HHHHHHHHHGGGGGGS-S-TTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHhcc-c-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999887664 4 577888888888877777766655443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.95  E-value=8.2e-28  Score=220.83  Aligned_cols=308  Identities=10%  Similarity=0.011  Sum_probs=223.7

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFY   77 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l   77 (420)
                      +|.+..+.....+.+.++..++.++ |+++||+|||+++..+.++.+++.+++.++  ++.+++.|            ++
T Consensus        30 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------~l   97 (375)
T 2gfp_A           30 LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAAS------------AM   97 (375)
T ss_dssp             SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHH------------HH
Confidence            4667788889999999999999999 999999999999999999999999999888  88999999            99


Q ss_pred             HHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccc-ccceeeec
Q psy6665          78 VAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIP-SPVWLLNK  152 (420)
Q Consensus        78 ~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~-~~~~l~~~  152 (420)
                      .|++.+ ...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+    +||+.|++.+++.++. ...++..+
T Consensus        98 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (375)
T 2gfp_A           98 QGMGTG-VGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMP  176 (375)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSC
T ss_pred             HHHHHH-hhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCc
Confidence            999999 87887999999999999999999999999999999999998876    8999999888776554 21222222


Q ss_pred             CcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhHHH
Q psy6665         153 GRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQ  232 (420)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (420)
                      +++++.                       ++   +++.+++.++.++ +     +.++...+..+...........+.|.
T Consensus       177 ~~~~~~-----------------------~~---~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (375)
T 2gfp_A          177 ETRPVD-----------------------AP---RTRLLTSYKTLFG-N-----SGFNCYLLMLIGGLAGIAAFEACSGV  224 (375)
T ss_dssp             CCSTTT-----------------------CC---CCCTTTCSTHHHH-H-----HHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred             ccCCCC-----------------------cc---cccHHHHHHHHhc-C-----cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            221110                       00   0011122223332 2     12222222233333345667778888


Q ss_pred             HHHh-hCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhc-cc---------h----hHHHHHHHHHHHHHH
Q psy6665         233 FLED-MGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQ-IE---------K----SLIPVFCILFYVAIS  296 (420)
Q Consensus       233 ~~~~-~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~-~~---------~----~~~~~~~~~~~~~~~  296 (420)
                      ++++ .|. +.+.+.......++.+++.++.+++.||.+++....... ..         .    +...........+..
T Consensus       225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~  304 (375)
T 2gfp_A          225 LMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFG  304 (375)
T ss_dssp             SSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHH
Confidence            8877 477 677788888889999999999999999998743332221 11         1    112122222222222


Q ss_pred             hhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHH
Q psy6665         297 VIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWF  355 (420)
Q Consensus       297 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~  355 (420)
                      .....+...++..|.+| ++|+++.|+.+....++..++|.+.|.+.+..+ +...+.+
T Consensus       305 ~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~-~~~~~~~  361 (375)
T 2gfp_A          305 AGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ-GSLGLLM  361 (375)
T ss_dssp             HHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH-HHHHHHH
T ss_pred             HHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccHHHHH
Confidence            22345666788899998 889999999999999999999999999887766 4444443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.93  E-value=3.4e-26  Score=212.81  Aligned_cols=339  Identities=10%  Similarity=0.038  Sum_probs=199.1

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHH---HHh---HHHHHhhccccccchhHHH
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTS---GYY---TQLIMTGQIEKSLIPVFCI   74 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~---~~~~~~~r~~~~~~~~~~~   74 (420)
                      |.+..+.....+.+.++..+++++ |+++||+|||++++.+..+.+++....   .+.   ...+...+           
T Consensus        39 g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  107 (417)
T 2cfq_A           39 HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGS-----------  107 (417)
T ss_dssp             CCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHH-----------
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence            567778889999999999999999 999999999999999888776533222   111   01122233           


Q ss_pred             HHHHHHHhhcccchhhhhhhhhccCc--cchhhhHhHHHHHHHHHHHHHHHHhhhh---hhHHHHHhHhhhcccccccee
Q psy6665          75 LFYVAISVIAMGPSPAIVYITEVARP--DLRGALICIGPSITSLGMVIVYALGAVL---HWRTVAWLSLAYILIPSPVWL  149 (420)
Q Consensus        75 ~~l~G~~~~~~~~~~~~~~i~e~~~~--~~r~~~~~~~~~~~~lG~~~~~~~~~~~---~wr~~f~~~~~~~~~~~~~~l  149 (420)
                       ++.|++.+ .........+.++.++  ++|+...+......++|..++|.+++.+   +||+.|++.++..++....++
T Consensus       108 -~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~  185 (417)
T 2cfq_A          108 -IVGGIYLG-FCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLF  185 (417)
T ss_dssp             -HGGGSSTT-HHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSC
T ss_pred             -HHHHHHHH-HHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Confidence             33333333 2222223334444433  3456666777667777888888777765   799999887776544311122


Q ss_pred             eecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHh
Q psy6665         150 LNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFY  229 (420)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (420)
                      ..+++.++.        .+.  .+.       ++.++++....+.++.++ ++..+     ...+..+...........+
T Consensus       186 ~~~~~~~~~--------~~~--~~~-------~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~  242 (417)
T 2cfq_A          186 FAKTDAPSS--------ATV--ANA-------VGANHSAFSLKLALELFR-QPKLW-----FLSLYVIGVSCTYDVFDQQ  242 (417)
T ss_dssp             SSCCCCSCS--------SCS--SSS-------SSSCCCCCCHHHHHHHTT-CHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred             HcCcccccc--------ccc--ccc-------cccccccccHHHHHHHhc-CCchh-----hHHHHHHHHHHHHHHHHHH
Confidence            111111000        000  000       000000001112223332 22211     1111111111122333445


Q ss_pred             HHHHHHhh-C---C-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHHHH
Q psy6665         230 AVQFLEDM-G---S-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILFYV  293 (420)
Q Consensus       230 ~~~~~~~~-g---~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~  293 (420)
                      .|.++.+. +   . ....+.......+..+++.++.++++||+|||+.+..+..+           .+...+.......
T Consensus       243 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  322 (417)
T 2cfq_A          243 FANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLH  322 (417)
T ss_dssp             HHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHH
T ss_pred             HHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            66666543 2   1 22334556666778889999999999999999887765544           1111221111111


Q ss_pred             HHHhhchhhHHHHHhcccCChhhhhhhHHHH-HHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhccc
Q psy6665         294 AISVIGMLSIPWTMTAEIFPLEIRGIAQGLT-FCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFLP  372 (420)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  372 (420)
                      ........+..+.+..|.+|++.|+++.++. +....+|+.++|.+.|.+.+..| +...|.+.+++++++.++.+...|
T Consensus       323 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~  401 (417)
T 2cfq_A          323 MFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHhhhc
Confidence            2222223344568999999999999999994 78888999999999999999888 778888888888888777666666


Q ss_pred             cCCCC
Q psy6665         373 ETHGR  377 (420)
Q Consensus       373 ~~~~~  377 (420)
                      |+++.
T Consensus       402 ~~~~~  406 (417)
T 2cfq_A          402 GPGPL  406 (417)
T ss_dssp             CSCTT
T ss_pred             CCCch
Confidence            54443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.91  E-value=2.4e-23  Score=199.73  Aligned_cols=129  Identities=12%  Similarity=0.014  Sum_probs=115.3

Q ss_pred             CccchHHHHHHHHHHHHHHHHHH-HHHHHhh-cchhHHHHhhHHHHHHHHHHHHh---HHHHHhhccccccchhHHHHHH
Q psy6665           3 SRMNVYLATVLVGVVRMVFGLLT-SQLLRTY-GRRSLTMFSGLGMAVCMTTSGYY---TQLIMTGQIEKSLIPVFCILFY   77 (420)
Q Consensus         3 ~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~r~~~~~~~~~~~~~l   77 (420)
                      .+..+.....+.+.++..++.++ |+++||+ |||+++..+.++.+++.++++++   ++.+++.|            ++
T Consensus        51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~l  118 (524)
T 2xut_A           51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGL------------FL  118 (524)
T ss_dssp             TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHH------------HH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH------------HH
Confidence            67888889999999999999999 9999999 99999999999999999988876   77888999            99


Q ss_pred             HHHHhhcccchhhhhhhhhccCccchhhhHhH---HHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccc
Q psy6665          78 VAISVIAMGPSPAIVYITEVARPDLRGALICI---GPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIP  144 (420)
Q Consensus        78 ~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~---~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~  144 (420)
                      .|++.+ ...+...+++.|++|+++|+++.+.   .+.+.++|..++|.+++.+    +||+.|++.+++.++.
T Consensus       119 ~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~  191 (524)
T 2xut_A          119 IALGSG-GIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVA  191 (524)
T ss_dssp             HHHHHH-TTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHH
T ss_pred             HHHhcc-ccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            999999 7777799999999999999877666   8889999999999888766    8999999887766544

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.44  E-value=2.1e-13  Score=127.90  Aligned_cols=167  Identities=8%  Similarity=-0.045  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHHhcchhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-------
Q psy6665         209 LVITVLFALQQLAGIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-------  280 (420)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-------  280 (420)
                      +.......+...........+.|.+.++. . ..+.+.......++..++.++.|+++||+|||+.+..+..+       
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~  108 (451)
T 1pw4_A           30 FLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLF  108 (451)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence            33343444444434555677788888887 7 78889999999999999999999999999999998887766       


Q ss_pred             --h------hHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHH
Q psy6665         281 --K------SLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMV  352 (420)
Q Consensus       281 --~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~  352 (420)
                        .      +...++...++.+.......+...+++.|.+|+++|++++++.+....+|..++|.+.+.+.+..|+++..
T Consensus       109 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~  188 (451)
T 1pw4_A          109 MGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAA  188 (451)
T ss_dssp             HHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTC
T ss_pred             HHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence              1      01122222233333333346677799999999999999999999999999999999999988877557888


Q ss_pred             HHHHHHHHHHHHHHhhhccccCCC
Q psy6665         353 QWFFALISVISIVYVYIFLPETHG  376 (420)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~  376 (420)
                      +++.++++++..++.++..||+.+
T Consensus       189 f~~~~~~~~~~~~~~~~~~~~~~~  212 (451)
T 1pw4_A          189 LYMPAFCAILVALFAFAMMRDTPQ  212 (451)
T ss_dssp             THHHHHHHHHHHHHHHHHCCCSST
T ss_pred             HHHHHHHHHHHHHHHHhhccCCHh
Confidence            888888887777776667776543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.42  E-value=2e-12  Score=120.62  Aligned_cols=146  Identities=8%  Similarity=0.023  Sum_probs=111.5

Q ss_pred             chhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc--------------hhHHHH
Q psy6665         222 GIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE--------------KSLIPV  286 (420)
Q Consensus       222 ~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~--------------~~~~~~  286 (420)
                      .........|.+.++.|. ..+.+.......++..++.++.|+++||+|||+.+..+..+              .+...+
T Consensus        41 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l  120 (438)
T 3o7q_A           41 ANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLF  120 (438)
T ss_dssp             HHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence            345666778887777788 88899999999999999999999999999999998877766              122233


Q ss_pred             HHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHH-HhcCc-----------------
Q psy6665         287 FCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFK-DSVGG-----------------  348 (420)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~-~~~g~-----------------  348 (420)
                      +...++.+.......+...+++.|.+|+++|+.+.++.+....+|..++|.+.+.+. +..+.                 
T Consensus       121 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  200 (438)
T 3o7q_A          121 LVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAY  200 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhh
Confidence            333333333333446677799999999999999999999999999999999999988 54442                 


Q ss_pred             -------chHHHHHHHHHHHHHHHHh
Q psy6665         349 -------SAMVQWFFALISVISIVYV  367 (420)
Q Consensus       349 -------~~~~~~~~~~~~~~~~~~~  367 (420)
                             ++..+.+.+++..+..++.
T Consensus       201 ~~~~~~~w~~~~~~~~~~~~~~~~~~  226 (438)
T 3o7q_A          201 KHSLVLSVQTPYMIIVAIVLLVALLI  226 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence                   4566666666655555444

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.38  E-value=1.7e-12  Score=118.56  Aligned_cols=154  Identities=12%  Similarity=0.004  Sum_probs=120.8

Q ss_pred             chhhHHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHH
Q psy6665         222 GIYITIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCI  289 (420)
Q Consensus       222 ~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~  289 (420)
                      .........|.+.++.|. +.+.+.......++..++.++.|+++||+|||+.+..+..+           ++...+...
T Consensus        15 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   94 (375)
T 2gfp_A           15 AQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAA   94 (375)
T ss_dssp             HHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            345556667777777788 78888999999999999999999999999999988877665           223333333


Q ss_pred             HHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhh
Q psy6665         290 LFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYI  369 (420)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  369 (420)
                      .+..+.......+...+++.|.+|+++|++++++.+....+|..++|.+.+.+.+..| ++..+.+.++..++..+...+
T Consensus        95 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~  173 (375)
T 2gfp_A           95 SAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-WRACYLFLLVLCAGVTFSMAR  173 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-HHHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHH
Confidence            3333333334566777999999999999999999999999999999999999988888 888888888887777765656


Q ss_pred             ccccCCC
Q psy6665         370 FLPETHG  376 (420)
Q Consensus       370 ~~~~~~~  376 (420)
                      ..||+++
T Consensus       174 ~~~~~~~  180 (375)
T 2gfp_A          174 WMPETRP  180 (375)
T ss_dssp             SSCCCST
T ss_pred             HCcccCC
Confidence            6676543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.38  E-value=3.6e-12  Score=120.89  Aligned_cols=148  Identities=10%  Similarity=0.047  Sum_probs=115.4

Q ss_pred             chhhHHHhHHHHHHh------hCC-cchHHHHHHHHHHHHHHHHHHHHHhhhc-cCchhhHhhhccc-----------hh
Q psy6665         222 GIYITIFYAVQFLED------MGS-RMNVYLATVLVGVVRMVFGLLTSQLLRT-YGRRSLTMFSQIE-----------KS  282 (420)
Q Consensus       222 ~~~~~~~~~~~~~~~------~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~-----------~~  282 (420)
                      .++....+.+.|+++      .|. ..+.+.......++..++.++.|+++|| +|||+.+..+..+           .+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~  107 (491)
T 4aps_A           28 SYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFG  107 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhh
Confidence            456666777777765      477 7788899999999999999999999999 8999998887766           23


Q ss_pred             HHHHHHHHHHHHHHhhchhhHHHHHhcccCChhh--hhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHH
Q psy6665         283 LIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEI--RGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALIS  360 (420)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  360 (420)
                      ...+....++.+.......+...+++.|.+|++.  |+.+.++.+....+|..++|.+.+.+.+..| ++..+++.++..
T Consensus       108 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~  186 (491)
T 4aps_A          108 ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG-YHVAFSLAAIGM  186 (491)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHH
Confidence            3333333334444344456777899999999888  7888888999999999999999999999988 888888877766


Q ss_pred             HHHHHHhhhc
Q psy6665         361 VISIVYVYIF  370 (420)
Q Consensus       361 ~~~~~~~~~~  370 (420)
                      +++.+...+.
T Consensus       187 ~~~~~~~~~~  196 (491)
T 4aps_A          187 FIGLLVYYFG  196 (491)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            6666555433

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.35  E-value=2.4e-11  Score=116.20  Aligned_cols=147  Identities=15%  Similarity=0.192  Sum_probs=113.4

Q ss_pred             chhhHHHhHHHHHHh-hC------C-cchHHHHHHHHHHHHHHHHHHHHHhhhcc-CchhhHhhhccc-----------h
Q psy6665         222 GIYITIFYAVQFLED-MG------S-RMNVYLATVLVGVVRMVFGLLTSQLLRTY-GRRSLTMFSQIE-----------K  281 (420)
Q Consensus       222 ~~~~~~~~~~~~~~~-~g------~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~-----------~  281 (420)
                      ..+....+.+.++.+ .|      . ..+.+.......++..++.++.|+++||+ |||+.+..+..+           .
T Consensus        27 ~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~  106 (524)
T 2xut_A           27 SFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE  106 (524)
T ss_dssp             HHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc
Confidence            355666777777765 48      8 78888999999999999999999999999 999988777655           2


Q ss_pred             -hHHHHHHHHHHHHHHhhchhhHHHHHhcccCChhhhhhhHHH---HHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHH
Q psy6665         282 -SLIPVFCILFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGL---TFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFA  357 (420)
Q Consensus       282 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~---~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~  357 (420)
                       +...+....++.+.......+...+++.|.+|++.|++..+.   .+....+|..++|.+.+.+.+..| ++..+.+.+
T Consensus       107 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~f~~~~  185 (524)
T 2xut_A          107 HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG-AAVAFGIPG  185 (524)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC-HHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHH
Confidence             333343334444444444567778999999999999776665   888999999999999999999888 888888877


Q ss_pred             HHHHHHHHHhhh
Q psy6665         358 LISVISIVYVYI  369 (420)
Q Consensus       358 ~~~~~~~~~~~~  369 (420)
                      ++.++..+...+
T Consensus       186 ~~~~~~~~~~~~  197 (524)
T 2xut_A          186 VLMFVATVFFWL  197 (524)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHH
Confidence            776666555433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.10  E-value=8.4e-10  Score=104.51  Aligned_cols=103  Identities=14%  Similarity=0.042  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------------------------hhHHHHHHHHHHH
Q psy6665         243 VYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------------------------KSLIPVFCILFYV  293 (420)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~  293 (420)
                      .++..+...++.++|+++.|+++||+|||+.+.++.++                             .+...++..-++.
T Consensus        57 ~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~  136 (491)
T 4gc0_A           57 LGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIG  136 (491)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHH
Confidence            34566677889999999999999999999998877654                             1223344444444


Q ss_pred             HHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHh
Q psy6665         294 AISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDS  345 (420)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~  345 (420)
                      +....+..+...+++.|..|++.|+...++.+.....|..+++.+.......
T Consensus       137 G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~  188 (491)
T 4gc0_A          137 GIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARS  188 (491)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccc
Confidence            4444455677789999999999999999999999988888888777665543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.96  E-value=9.9e-10  Score=101.72  Aligned_cols=123  Identities=11%  Similarity=0.056  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHHHHHHhhcc
Q psy6665           9 LATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFYVAISVIAM   85 (420)
Q Consensus         9 ~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l~G~~~~~~   85 (420)
                      ....++..++..++.++ |+++||+|||+++..+.++.+++.+..++.  .+.+++..            ++.+++.+ .
T Consensus       262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~-~  328 (417)
T 2cfq_A          262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILK------------TLHMFEVP-F  328 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHT------------THHHHHHH-H
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH------------HHHHHHHH-H
Confidence            34455566777788888 999999999999998888888776666554  55566666            77777776 5


Q ss_pred             cchhhhhhhhhccCccchhhhHhH-HHHHHHHHHHHHHHHhhhh----hhHHHHHhHhhhcccc
Q psy6665          86 GPSPAIVYITEVARPDLRGALICI-GPSITSLGMVIVYALGAVL----HWRTVAWLSLAYILIP  144 (420)
Q Consensus        86 ~~~~~~~~i~e~~~~~~r~~~~~~-~~~~~~lG~~~~~~~~~~~----~wr~~f~~~~~~~~~~  144 (420)
                      ..+....++.|.+|++.|+++.++ ++....+|..++|.+++.+    +++..|.+.+++.++.
T Consensus       329 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~  392 (417)
T 2cfq_A          329 LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGF  392 (417)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            555578899999999999999998 4888889999998888765    6778887777665554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	420
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	6e-08
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	6e-07

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 52.0 bits (123), Expect = 6e-08
 Identities = 42/389 (10%), Positives = 103/389 (26%), Gaps = 20/389 (5%)

Query: 9   LATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSGYYTQLIMTGQIEKSL 68
            A   + +       +   +      R       +  A  M   G+            S 
Sbjct: 63  FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT-------SS 115

Query: 69  IPVFCILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL 128
           I V  +L ++      MG  P    +        RG ++ +     ++G  I   L  + 
Sbjct: 116 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 175

Query: 129 HWRTVAWLSLAYILIPSPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKEN 188
                 W +  Y+     + +     A              +E KN   +     + +E 
Sbjct: 176 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQEL 235

Query: 189 QSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGSRMNVYLATV 248
            +    +  ++         +    ++ L+     +   +        +      Y    
Sbjct: 236 TAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYE 295

Query: 249 LVGVVRMVFGLLTSQLLRTYGRRSLTMFS-------------QIEKSLIPVFCILFYVAI 295
             G+   +     S  +    R +  +F                  +       +  +  
Sbjct: 296 YAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGF 355

Query: 296 SVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWF 355
            + G + +      E+ P +  G A G T    ++    A      +     G       
Sbjct: 356 LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMV 415

Query: 356 FALISVISIVYVYIFLPETHGRTLLEIEE 384
               S+++++ + + +     R    ++E
Sbjct: 416 MIGGSILAVILLIVVMIGEKRRHEQLLQE 444

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 49.0 bits (115), Expect = 6e-07
 Identities = 40/375 (10%), Positives = 85/375 (22%), Gaps = 9/375 (2%)

Query: 9   LATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSGLGMAVCMTTSGYYTQLIMTGQIEKSL 68
           +    + +  ++F  L   L    G R   ++   GM V       +    +        
Sbjct: 47  IIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL------- 99

Query: 69  IPVFCILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL 128
              + IL    +  I +G           A  +              +   + +ALGA +
Sbjct: 100 --QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASI 157

Query: 129 HWRTVAWLSLAYILIPSPVWLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKEN 188
                   +     + S   L+       A       A     V           + +  
Sbjct: 158 VGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELF 217

Query: 189 QSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQFLEDMGSRMNVYLATV 248
           +      + +  +       +                     V         +       
Sbjct: 218 RQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMF 277

Query: 249 LVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIEKSLIPVFCILFYVAISVIGMLSIPWTMT 308
              ++    G   + LL         + S    S + V  +       V  +L   +   
Sbjct: 278 FAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337

Query: 309 AEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVY 368
              F +        + FC    L    +           G         L+++   +   
Sbjct: 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISV 397

Query: 369 IFLPETHGRTLLEIE 383
             L      +LL  +
Sbjct: 398 FTLSGPGPLSLLRRQ 412

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	420
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.93
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.51
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.02

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.6e-33  Score=257.66  Aligned_cols=346  Identities=11%  Similarity=0.010  Sum_probs=238.5

Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh------HHHHHhhccccccchhHH
Q psy6665           1 MGSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY------TQLIMTGQIEKSLIPVFC   73 (420)
Q Consensus         1 ~~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------~~~~~~~r~~~~~~~~~~   73 (420)
                      +|.+.++..+..+++.++..+++++ |+++||+|||+++..+.++.+++.++++++      ++.+++.|          
T Consensus        54 ~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  123 (447)
T d1pw4a_          54 QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLL----------  123 (447)
T ss_dssp             STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHH----------
T ss_pred             hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHH----------
Confidence            3678889999999999999999999 999999999999999999999999988765      67889999          


Q ss_pred             HHHHHHHHhhcccchhhhhhhhhccCccchhhhHhHHHHHHHHHHHHHHHHhhhh-----hhHHHHHhHhhhcccc-ccc
Q psy6665          74 ILFYVAISVIAMGPSPAIVYITEVARPDLRGALICIGPSITSLGMVIVYALGAVL-----HWRTVAWLSLAYILIP-SPV  147 (420)
Q Consensus        74 ~~~l~G~~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~-----~wr~~f~~~~~~~~~~-~~~  147 (420)
                        ++.|++.+ ...+....++.|++|+++|++++++.+.+..+|..+++.++...     +||+.|++.+++.++. ...
T Consensus       124 --~~~g~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  200 (447)
T d1pw4a_         124 --FLCGWFQG-MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFA  200 (447)
T ss_dssp             --HHHHHHHH-HTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHH
T ss_pred             --HHHHHhhh-hhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHH
Confidence              99999999 77777999999999999999999999999999999988776654     7999988877766654 111


Q ss_pred             eeeecCcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHH
Q psy6665         148 WLLNKGRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITI  227 (420)
Q Consensus       148 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (420)
                      +...++.+++...     ...+ +.+.  ++.  ++..++.+++...++... +...+.+.++......+......+...
T Consensus       201 ~~~~~~~~~~~~~-----~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (447)
T d1pw4a_         201 FAMMRDTPQSCGL-----PPIE-EYKN--DYP--DDYNEKAEQELTAKQIFM-QYVLPNKLLWYIAIANVFVYLLRYGIL  269 (447)
T ss_dssp             HHHCCCSSTTTCC-----CSCT-TTCC--C---------------CCTHHHH-HHTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcccchhhccc-----chhh-hhhh--hcc--cchhhccccccchhhHHH-HHHHcCchHHHHHHHhhhhhhhhhcch
Confidence            2222221111000     0000 0000  000  000000000000111111 122233344444444444444566778


Q ss_pred             HhHHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc----------------hhHHHHHHH
Q psy6665         228 FYAVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE----------------KSLIPVFCI  289 (420)
Q Consensus       228 ~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~----------------~~~~~~~~~  289 (420)
                      .+.|.++.+. +. ..+.+.......+..+++.++.|++.||++|++........                .+.......
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (447)
T d1pw4a_         270 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMIC  349 (447)
T ss_dssp             HHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHH
T ss_pred             hhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHH
Confidence            8899998876 66 67778888888999999999999999999876432211111                222222233


Q ss_pred             HHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHH-HHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhh
Q psy6665         290 LFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHIL-MFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVY  368 (420)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~-~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  368 (420)
                      .+..++...+..+....+..|.+|++.|+++.|+.+...+++ ..++|.+.|++.|..| +...+.+.+++++++.++..
T Consensus       350 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~  428 (447)
T d1pw4a_         350 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLI  428 (447)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHH
Confidence            333333334446666788999999999999999999998875 4568999999999999 88888887777777776665


Q ss_pred             hcc
Q psy6665         369 IFL  371 (420)
Q Consensus       369 ~~~  371 (420)
                      .+.
T Consensus       429 ~~~  431 (447)
T d1pw4a_         429 VVM  431 (447)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=5.6e-25  Score=201.58  Aligned_cols=344  Identities=10%  Similarity=0.034  Sum_probs=203.9

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHhhHHHHHHHHHHHHh--HHHHHhhccccccchhHHHHHHH
Q psy6665           2 GSRMNVYLATVLVGVVRMVFGLLT-SQLLRTYGRRSLTMFSGLGMAVCMTTSGYY--TQLIMTGQIEKSLIPVFCILFYV   78 (420)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~l~   78 (420)
                      |.|.++.....+++.++..+++++ |+++||+|||++++.+..+..++..+..+.  .......+        +....+.
T Consensus        39 g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~  110 (417)
T d1pv7a_          39 HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNI--------LVGSIVG  110 (417)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTC--------HHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH--------HHHHHHh
Confidence            567888899999999999999999 999999999999999999998888887776  33333333        0000333


Q ss_pred             HHHhhcccchhhhhhhhhccCc--cchhhhHhHHHHHHHHHHHHHHHHhhhh---hhHHHHHhHhhhcccc-ccceeeec
Q psy6665          79 AISVIAMGPSPAIVYITEVARP--DLRGALICIGPSITSLGMVIVYALGAVL---HWRTVAWLSLAYILIP-SPVWLLNK  152 (420)
Q Consensus        79 G~~~~~~~~~~~~~~i~e~~~~--~~r~~~~~~~~~~~~lG~~~~~~~~~~~---~wr~~f~~~~~~~~~~-~~~~l~~~  152 (420)
                      +.+.+ ...........+..++  +++.+..+........+..+++.+++.+   +|+..+........+. ...++..+
T Consensus       111 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (417)
T d1pv7a_         111 GIYLG-FCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKT  189 (417)
T ss_dssp             TTTGG-GGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred             hhccc-ccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccccccchhhHHHHHHHHHHHHhc
Confidence            33333 2222233333333332  3445566677777788888888887766   4555544443333322 11111111


Q ss_pred             CcHHHHHHHHHHHhcchhhhhhhHHHHhhhccchhhhhhhhHHHHHhhccccchHHHHHHHHHHHHHhcchhhHHHhHHH
Q psy6665         153 GRANQALKSLKYLARNYKEVKNKEQELKKMNSTKENQSLSARLIKMVTMATGIKPLLVITVLFALQQLAGIYITIFYAVQ  232 (420)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (420)
                      ++.++.+           +.++       ++..+++..+....+..  .....+............    ........+.
T Consensus       190 ~~~~~~~-----------~~~~-------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  245 (417)
T d1pv7a_         190 DAPSSAT-----------VANA-------VGANHSAFSLKLALELF--RQPKLWFLSLYVIGVSCT----YDVFDQQFAN  245 (417)
T ss_dssp             CSCSSSC-----------SSHH-------HHSCCCCCCHHHHHHHT--TSSHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred             ccccchh-----------hhhh-------hhhhccccccccccccc--ccccccchhhhhHHHHHH----HHhhhccccc
Confidence            1110000           0000       00000000111111111  111111122222221111    1112222222


Q ss_pred             HHHhh----CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHHHHHHHHHHH
Q psy6665         233 FLEDM----GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVFCILFYVAIS  296 (420)
Q Consensus       233 ~~~~~----g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~  296 (420)
                      +....    +. ............++..++..+.+++.||.++|+.+..+..+           .+...........+..
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~  325 (417)
T d1pv7a_         246 FFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFE  325 (417)
T ss_dssp             HHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred             cccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHH
Confidence            22221    22 33445566777788889999999999999999988777665           2333333333333333


Q ss_pred             hhchhhHHHHHhcccCChhhhhhhHHHHH-HHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhhccccCC
Q psy6665         297 VIGMLSIPWTMTAEIFPLEIRGIAQGLTF-CLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYIFLPETH  375 (420)
Q Consensus       297 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~-~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (420)
                      .....+...++..|.+|++.|+++.|+.. ....+|..++|.+.|++.|+.| +...+++.+++.++..++..+.+++++
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~l~~~~  404 (417)
T d1pv7a_         326 VPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             HHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             HHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            33445677789999999999999999865 5567899999999999999999 888899988888888888777776665


Q ss_pred             CCCh
Q psy6665         376 GRTL  379 (420)
Q Consensus       376 ~~~~  379 (420)
                      ....
T Consensus       405 ~~~~  408 (417)
T d1pv7a_         405 PLSL  408 (417)
T ss_dssp             CTTH
T ss_pred             ccch
Confidence            5544

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=3e-14  Score=131.05  Aligned_cols=149  Identities=10%  Similarity=0.020  Sum_probs=114.5

Q ss_pred             HHHhHHHHHHhhCC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc---------------hhHHHHHHH
Q psy6665         226 TIFYAVQFLEDMGS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE---------------KSLIPVFCI  289 (420)
Q Consensus       226 ~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~---------------~~~~~~~~~  289 (420)
                      +....|. +++.|+ ..+.++..+...++..++.++.|+++||+|||+.+..+.++               .+...+...
T Consensus        44 ~~~~~p~-~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (447)
T d1pw4a_          44 FALAMPY-LVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVL  122 (447)
T ss_dssp             HHHHHHH-TTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHH
T ss_pred             HHHHHHH-HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHH
Confidence            4444454 455688 88999999999999999999999999999999998877665               111223333


Q ss_pred             HHHHHHHhhchhhHHHHHhcccCChhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHHHHHHhhh
Q psy6665         290 LFYVAISVIGMLSIPWTMTAEIFPLEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVISIVYVYI  369 (420)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  369 (420)
                      .+..+.......+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..++++..+++.+.+.++..++.+.
T Consensus       123 ~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  202 (447)
T d1pw4a_         123 LFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFA  202 (447)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHH
Confidence            33333333334566678999999999999999999999999999999999888887765788888888888777777766


Q ss_pred             ccccCC
Q psy6665         370 FLPETH  375 (420)
Q Consensus       370 ~~~~~~  375 (420)
                      +.++++
T Consensus       203 ~~~~~~  208 (447)
T d1pw4a_         203 MMRDTP  208 (447)
T ss_dssp             HCCCSS
T ss_pred             hcccch
Confidence            666544

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=8.8e-10  Score=99.00  Aligned_cols=155  Identities=9%  Similarity=0.024  Sum_probs=95.9

Q ss_pred             chhhHHHhHHHHHHhh-CC-cchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhhhccc-----------hhHHHHH-
Q psy6665         222 GIYITIFYAVQFLEDM-GS-RMNVYLATVLVGVVRMVFGLLTSQLLRTYGRRSLTMFSQIE-----------KSLIPVF-  287 (420)
Q Consensus       222 ~~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-----------~~~~~~~-  287 (420)
                      .......+.|.++++. |. +.+.+...+...++..++.++.|+++||+|||+.+..+...           ....... 
T Consensus        22 ~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~  101 (417)
T d1pv7a_          22 IMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQY  101 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence            3455666778877764 88 88899999999999999999999999999999988776554           0000000 


Q ss_pred             --HHHHHHHHHhhc-hhhHHHHHhcccCC--hhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHhcCcchHHHHHHHHHHHH
Q psy6665         288 --CILFYVAISVIG-MLSIPWTMTAEIFP--LEIRGIAQGLTFCLAHILMFFALQYYPWFKDSVGGSAMVQWFFALISVI  362 (420)
Q Consensus       288 --~~~~~~~~~~~~-~~~~~~~~~~~~~p--~~~r~~~~g~~~~~~~~~~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  362 (420)
                        ...........+ ..........+..+  .+.+....+........+..++|.+.+.+.+..+  +..+........+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~  179 (417)
T d1pv7a_         102 NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINN--QFVFWLGSGCALI  179 (417)
T ss_dssp             TCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccc--cccccchhhHHHH
Confidence              001111111111 11111112222222  2345566777788888888999999988877654  5555555555555


Q ss_pred             HHHHhhhccccCCCCC
Q psy6665         363 SIVYVYIFLPETHGRT  378 (420)
Q Consensus       363 ~~~~~~~~~~~~~~~~  378 (420)
                      ..++..+..++.....
T Consensus       180 ~~~~~~~~~~~~~~~~  195 (417)
T d1pv7a_         180 LAVLLFFAKTDAPSSA  195 (417)
T ss_dssp             HHHHHHSSCCCSCSSS
T ss_pred             HHHHHHHHhcccccch
Confidence            5555555666554443