Psyllid ID: psy6711

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-----
Protein Sequence
MGIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQSHSGSINKVEDLPEMSIVELEDVKIIQDDHTIHKMSARINIIFSDCDKFMTNYGKPPSIFFFA
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHccccEEEEccccccccccccccccEEEccccccccEEccEEEEcccccccccEEcccccccccccccccccccccEEEEEcccEEEcccHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHccccEEEEccccEEcccccccccEEEEEccHHHHHcccccEEccccccHHHEEEEcccccccccccccccEEEEHHcEEEEccccHHHccEEEEEEEcccHHHHccccccccEEEEc
Coil and Loop (DISEMBL)
mgikpikwnLQIAVSakhhkvpffiaapwtsidldipngdaivieerpsqemthVAGIHVaasdcgskgtfqshsgsinkvedlpemsiveledvkiiqddhTIHKMSARINIIFSDCDkfmtnygkppsifffa
Flexible Loop (DISEMBL)
MGIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQSHSGSINKVEDLPEMSIVELEDVKIIQDDHTIHKMSARINIIFSDCDKFMTNYGKPPSIFFFA
Low Complexity Region (SEG)
MGIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQSHSGSINKVEDLPEMSIVELEDVKIIQDDHTIHKMSARINIIFSDCDKFMTNYGKPPSIFFFA
Disordered region (IsUnstruct)
****PIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEER****MTHVAGIHVAASDC******************LPEMSIVELEDVKIIQDDHTIHKMSARINIIFSDCDKFMTNYGKPPSIFFF*
Disordered Region (DISOPRED)
****PIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQSHSGSINKVEDLPEMSIVELEDVKIIQDDHTIHKMSARINIIFSDCDKFMTNYGKPPSIFFFA
Disordered Region (DISEMBL)
MGIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQSHSGSINKVEDLPEMSIVELEDVKIIQDDHTIHKMSARINIIFSDCDKFMTNYGKPPSIFFFA
Disordered Region (DISPRO)
MGIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQSHSGSINKVEDLPEMSIVELEDVKIIQDDHTIHKMSARINIIFSDCDKFMTNYGKPPSIFFFA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQSHSGSINKVEDLPEMSIVELEDVKIIQDDHTIHKMSARINIIFSDCDKFMTNYGKPPSIFFFA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	135	2.2.26 [Sep-21-2011]
B4GYU1	362	Methylthioribose-1-phosph	N/A	N/A	0.385	0.143	0.711	1e-14
Q29BB3	362	Methylthioribose-1-phosph	yes	N/A	0.385	0.143	0.711	1e-14
B4NG41	365	Methylthioribose-1-phosph	N/A	N/A	0.385	0.142	0.692	2e-14
B4PNE2	364	Methylthioribose-1-phosph	N/A	N/A	0.385	0.142	0.692	3e-14
B4QSM8	364	Methylthioribose-1-phosph	N/A	N/A	0.385	0.142	0.692	3e-14
B4I029	364	Methylthioribose-1-phosph	N/A	N/A	0.385	0.142	0.692	3e-14
B3P538	364	Methylthioribose-1-phosph	N/A	N/A	0.385	0.142	0.692	3e-14
B3M098	364	Methylthioribose-1-phosph	N/A	N/A	0.385	0.142	0.692	3e-14
Q9V9X4	364	Methylthioribose-1-phosph	yes	N/A	0.385	0.142	0.692	3e-14
Q16I17	360	Methylthioribose-1-phosph	N/A	N/A	0.385	0.144	0.673	4e-14

>sp|B4GYU1|MTNA_DROPE Methylthioribose-1-phosphate isomerase OS=Drosophila persimilis GN=GL27236 PE=3 SV=1

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 42/52 (80%)

Query: 11  QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAA 62
           QIAV AKHH VPFF+AAP TSIDL IP+GD I+IEERP +EMTHV    +AA
Sbjct: 268 QIAVVAKHHGVPFFVAAPLTSIDLHIPSGDHIIIEERPDREMTHVGEHRIAA 319

Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).
Drosophila persimilis (taxid: 7234)
EC: 5EC: .EC: 3EC: .EC: 1EC: .EC: 2EC: 3

>sp|Q29BB3|MTNA_DROPS Methylthioribose-1-phosphate isomerase OS=Drosophila pseudoobscura pseudoobscura GN=GA10928 PE=3 SV=1

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 42/52 (80%)

Query: 11  QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAA 62
           QIAV AKHH VPFF+AAP TSIDL IP+GD I+IEERP +EMTHV    +AA
Sbjct: 268 QIAVVAKHHGVPFFVAAPLTSIDLHIPSGDHIIIEERPDREMTHVGEHRIAA 319

Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 3

>sp|B4NG41|MTNA_DROWI Methylthioribose-1-phosphate isomerase OS=Drosophila willistoni GN=GK22419 PE=3 SV=1

 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/52 (69%), Positives = 42/52 (80%)

Query: 11  QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAA 62
           QIAV AKHH VPF++AAP TSIDL IP+GD I+IEERP +EMTHV    +AA
Sbjct: 271 QIAVVAKHHGVPFYVAAPLTSIDLQIPSGDHIIIEERPDREMTHVGEHRIAA 322

Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).

Drosophila willistoni (taxid: 7260)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 3

>sp|B4PNE2|MTNA_DROYA Methylthioribose-1-phosphate isomerase OS=Drosophila yakuba GN=GE23315 PE=3 SV=1

 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/52 (69%), Positives = 41/52 (78%)

Query: 11  QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAA 62
           QIAV AKHH VPF++AAP TSIDL IP GD I+IEERP +EMTHV    +AA
Sbjct: 270 QIAVVAKHHDVPFYVAAPLTSIDLAIPGGDHIIIEERPDREMTHVGEHRIAA 321

Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).

Drosophila yakuba (taxid: 7245)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 3

>sp|B4QSM8|MTNA_DROSI Methylthioribose-1-phosphate isomerase OS=Drosophila simulans GN=GD16414 PE=3 SV=1

 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/52 (69%), Positives = 41/52 (78%)

Query: 11  QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAA 62
           QIAV AKHH VPF++AAP TSIDL IP GD I+IEERP +EMTHV    +AA
Sbjct: 270 QIAVVAKHHDVPFYVAAPLTSIDLAIPGGDHIIIEERPDREMTHVGEHRIAA 321

Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).

Drosophila simulans (taxid: 7240)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 3

>sp|B4I029|MTNA_DROSE Methylthioribose-1-phosphate isomerase OS=Drosophila sechellia GN=GM12085 PE=3 SV=1

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/52 (69%), Positives = 41/52 (78%)

Query: 11  QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAA 62
           QIAV AKHH VPF++AAP TSIDL IP GD I+IEERP +EMTHV    +AA
Sbjct: 270 QIAVVAKHHDVPFYVAAPLTSIDLAIPGGDHIIIEERPDREMTHVGEHRIAA 321

Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).

Drosophila sechellia (taxid: 7238)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 3

>sp|B3P538|MTNA_DROER Methylthioribose-1-phosphate isomerase OS=Drosophila erecta GN=GG11866 PE=3 SV=1

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/52 (69%), Positives = 41/52 (78%)

Query: 11  QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAA 62
           QIAV AKHH VPF++AAP TSIDL IP GD I+IEERP +EMTHV    +AA
Sbjct: 270 QIAVVAKHHDVPFYVAAPLTSIDLAIPGGDHIIIEERPDREMTHVGEHRIAA 321

Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).

Drosophila erecta (taxid: 7220)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 3

>sp|B3M098|MTNA_DROAN Methylthioribose-1-phosphate isomerase OS=Drosophila ananassae GN=GF17194 PE=3 SV=1

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/52 (69%), Positives = 41/52 (78%)

Query: 11  QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAA 62
           QIAV AKHH VPF++AAP TSIDL IP GD I+IEERP +EMTHV    +AA
Sbjct: 270 QIAVVAKHHGVPFYVAAPLTSIDLAIPGGDHIIIEERPDREMTHVGEHRIAA 321

Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).

Drosophila ananassae (taxid: 7217)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 3

>sp|Q9V9X4|MTNA_DROME Methylthioribose-1-phosphate isomerase OS=Drosophila melanogaster GN=CG11334 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/52 (69%), Positives = 41/52 (78%)

Query: 11  QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAA 62
           QIAV AKHH VPF++AAP TSIDL IP GD I+IEERP +EMTHV    +AA
Sbjct: 270 QIAVVAKHHDVPFYVAAPLTSIDLAIPGGDHIIIEERPDREMTHVGEHRIAA 321

Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).

Drosophila melanogaster (taxid: 7227)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 3

>sp|Q16I17|MTNA_AEDAE Methylthioribose-1-phosphate isomerase OS=Aedes aegypti GN=AAEL013828 PE=3 SV=1

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/52 (67%), Positives = 42/52 (80%)

Query: 11  QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAA 62
           QI V AK+H VPF++AAP+TSIDL IP+GD IVIEERP +EMTHV    +AA
Sbjct: 262 QIGVVAKYHDVPFYVAAPFTSIDLKIPSGDRIVIEERPDREMTHVGEHRIAA 313

Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).

Aedes aegypti (taxid: 7159)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
195165860	362	GL27236 [Drosophila persimilis] gi|31347	0.385	0.143	0.711	1e-12
125773381	362	GA10928 [Drosophila pseudoobscura pseudo	0.385	0.143	0.711	1e-12
195449892	365	GK22419 [Drosophila willistoni] gi|31347	0.385	0.142	0.692	1e-12
289742017	356	putative translation initiation factor [	0.385	0.146	0.692	1e-12
195575310	364	GD16414 [Drosophila simulans] gi|3134713	0.385	0.142	0.692	2e-12
195505456	364	GE23315 [Drosophila yakuba] gi|313471318	0.385	0.142	0.692	2e-12
195341767	364	GM12085 [Drosophila sechellia] gi|313471	0.385	0.142	0.692	2e-12
194904902	364	GG11866 [Drosophila erecta] gi|313471311	0.385	0.142	0.692	2e-12
194741994	364	GF17194 [Drosophila ananassae] gi|313471	0.385	0.142	0.692	2e-12
21357667	364	CG11334, isoform B [Drosophila melanogas	0.385	0.142	0.692	2e-12

>gi|195165860|ref|XP_002023756.1| GL27236 [Drosophila persimilis] gi|313471314|sp|B4GYU1.1|MTNA_DROPE RecName: Full=Methylthioribose-1-phosphate isomerase; Short=M1Pi; Short=MTR-1-P isomerase; AltName: Full=S-methyl-5-thioribose-1-phosphate isomerase; AltName: Full=Translation initiation factor eIF-2B subunit alpha/beta/delta-like protein gi|194105916|gb|EDW27959.1| GL27236 [Drosophila persimilis]

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 42/52 (80%)

Query: 11  QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAA 62
           QIAV AKHH VPFF+AAP TSIDL IP+GD I+IEERP +EMTHV    +AA
Sbjct: 268 QIAVVAKHHGVPFFVAAPLTSIDLHIPSGDHIIIEERPDREMTHVGEHRIAA 319

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125773381|ref|XP_001357949.1| GA10928 [Drosophila pseudoobscura pseudoobscura] gi|121991956|sp|Q29BB3.1|MTNA_DROPS RecName: Full=Methylthioribose-1-phosphate isomerase; Short=M1Pi; Short=MTR-1-P isomerase; AltName: Full=S-methyl-5-thioribose-1-phosphate isomerase; AltName: Full=Translation initiation factor eIF-2B subunit alpha/beta/delta-like protein gi|54637683|gb|EAL27085.1| GA10928 [Drosophila pseudoobscura pseudoobscura]

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 42/52 (80%)

Query: 11  QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAA 62
           QIAV AKHH VPFF+AAP TSIDL IP+GD I+IEERP +EMTHV    +AA
Sbjct: 268 QIAVVAKHHGVPFFVAAPLTSIDLHIPSGDHIIIEERPDREMTHVGEHRIAA 319

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195449892|ref|XP_002072272.1| GK22419 [Drosophila willistoni] gi|313471317|sp|B4NG41.1|MTNA_DROWI RecName: Full=Methylthioribose-1-phosphate isomerase; Short=M1Pi; Short=MTR-1-P isomerase; AltName: Full=S-methyl-5-thioribose-1-phosphate isomerase; AltName: Full=Translation initiation factor eIF-2B subunit alpha/beta/delta-like protein gi|194168357|gb|EDW83258.1| GK22419 [Drosophila willistoni]

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/52 (69%), Positives = 42/52 (80%)

Query: 11  QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAA 62
           QIAV AKHH VPF++AAP TSIDL IP+GD I+IEERP +EMTHV    +AA
Sbjct: 271 QIAVVAKHHGVPFYVAAPLTSIDLQIPSGDHIIIEERPDREMTHVGEHRIAA 322

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289742017|gb|ADD19756.1| putative translation initiation factor [Glossina morsitans morsitans]

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/52 (69%), Positives = 42/52 (80%)

Query: 11  QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAA 62
           QIAV A+HH VPFF+AAP TSIDL IP+GD I+IEERP +EMTHV    +AA
Sbjct: 262 QIAVIARHHDVPFFVAAPLTSIDLQIPSGDHIIIEERPDREMTHVGEHRIAA 313

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195575310|ref|XP_002105622.1| GD16414 [Drosophila simulans] gi|313471344|sp|B4QSM8.1|MTNA_DROSI RecName: Full=Methylthioribose-1-phosphate isomerase; Short=M1Pi; Short=MTR-1-P isomerase; AltName: Full=S-methyl-5-thioribose-1-phosphate isomerase; AltName: Full=Translation initiation factor eIF-2B subunit alpha/beta/delta-like protein gi|194201549|gb|EDX15125.1| GD16414 [Drosophila simulans]

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/52 (69%), Positives = 41/52 (78%)

Query: 11  QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAA 62
           QIAV AKHH VPF++AAP TSIDL IP GD I+IEERP +EMTHV    +AA
Sbjct: 270 QIAVVAKHHDVPFYVAAPLTSIDLAIPGGDHIIIEERPDREMTHVGEHRIAA 321

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195505456|ref|XP_002099512.1| GE23315 [Drosophila yakuba] gi|313471318|sp|B4PNE2.1|MTNA_DROYA RecName: Full=Methylthioribose-1-phosphate isomerase; Short=M1Pi; Short=MTR-1-P isomerase; AltName: Full=S-methyl-5-thioribose-1-phosphate isomerase; AltName: Full=Translation initiation factor eIF-2B subunit alpha/beta/delta-like protein gi|194185613|gb|EDW99224.1| GE23315 [Drosophila yakuba]

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/52 (69%), Positives = 41/52 (78%)

Query: 11  QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAA 62
           QIAV AKHH VPF++AAP TSIDL IP GD I+IEERP +EMTHV    +AA
Sbjct: 270 QIAVVAKHHDVPFYVAAPLTSIDLAIPGGDHIIIEERPDREMTHVGEHRIAA 321

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195341767|ref|XP_002037477.1| GM12085 [Drosophila sechellia] gi|313471315|sp|B4I029.1|MTNA_DROSE RecName: Full=Methylthioribose-1-phosphate isomerase; Short=M1Pi; Short=MTR-1-P isomerase; AltName: Full=S-methyl-5-thioribose-1-phosphate isomerase; AltName: Full=Translation initiation factor eIF-2B subunit alpha/beta/delta-like protein gi|194131593|gb|EDW53636.1| GM12085 [Drosophila sechellia]

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/52 (69%), Positives = 41/52 (78%)

Query: 11  QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAA 62
           QIAV AKHH VPF++AAP TSIDL IP GD I+IEERP +EMTHV    +AA
Sbjct: 270 QIAVVAKHHDVPFYVAAPLTSIDLAIPGGDHIIIEERPDREMTHVGEHRIAA 321

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194904902|ref|XP_001981082.1| GG11866 [Drosophila erecta] gi|313471311|sp|B3P538.1|MTNA_DROER RecName: Full=Methylthioribose-1-phosphate isomerase; Short=M1Pi; Short=MTR-1-P isomerase; AltName: Full=S-methyl-5-thioribose-1-phosphate isomerase; AltName: Full=Translation initiation factor eIF-2B subunit alpha/beta/delta-like protein gi|190655720|gb|EDV52952.1| GG11866 [Drosophila erecta]

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/52 (69%), Positives = 41/52 (78%)

Query: 11  QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAA 62
           QIAV AKHH VPF++AAP TSIDL IP GD I+IEERP +EMTHV    +AA
Sbjct: 270 QIAVVAKHHDVPFYVAAPLTSIDLAIPGGDHIIIEERPDREMTHVGEHRIAA 321

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194741994|ref|XP_001953494.1| GF17194 [Drosophila ananassae] gi|313471310|sp|B3M098.1|MTNA_DROAN RecName: Full=Methylthioribose-1-phosphate isomerase; Short=M1Pi; Short=MTR-1-P isomerase; AltName: Full=S-methyl-5-thioribose-1-phosphate isomerase; AltName: Full=Translation initiation factor eIF-2B subunit alpha/beta/delta-like protein gi|190626531|gb|EDV42055.1| GF17194 [Drosophila ananassae]

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/52 (69%), Positives = 41/52 (78%)

Query: 11  QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAA 62
           QIAV AKHH VPF++AAP TSIDL IP GD I+IEERP +EMTHV    +AA
Sbjct: 270 QIAVVAKHHGVPFYVAAPLTSIDLAIPGGDHIIIEERPDREMTHVGEHRIAA 321

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|21357667|ref|NP_651868.1| CG11334, isoform B [Drosophila melanogaster] gi|24651647|ref|NP_733430.1| CG11334, isoform A [Drosophila melanogaster] gi|442622070|ref|NP_001263144.1| CG11334, isoform C [Drosophila melanogaster] gi|74867947|sp|Q9V9X4.1|MTNA_DROME RecName: Full=Methylthioribose-1-phosphate isomerase; Short=M1Pi; Short=MTR-1-P isomerase; AltName: Full=S-methyl-5-thioribose-1-phosphate isomerase; AltName: Full=Translation initiation factor eIF-2B subunit alpha/beta/delta-like protein gi|7302052|gb|AAF57154.1| CG11334, isoform A [Drosophila melanogaster] gi|7302053|gb|AAF57155.1| CG11334, isoform B [Drosophila melanogaster] gi|16769926|gb|AAL28212.1| GH08894p [Drosophila melanogaster] gi|220946662|gb|ACL85874.1| CG11334-PA [synthetic construct] gi|440218112|gb|AGB96523.1| CG11334, isoform C [Drosophila melanogaster]

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/52 (69%), Positives = 41/52 (78%)

Query: 11  QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAA 62
           QIAV AKHH VPF++AAP TSIDL IP GD I+IEERP +EMTHV    +AA
Sbjct: 270 QIAVVAKHHDVPFYVAAPLTSIDLAIPGGDHIIIEERPDREMTHVGEHRIAA 321

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
FB|FBgn0039849	364	CG11334 [Drosophila melanogast	0.385	0.142	0.692	8e-14
UNIPROTKB|F1SD78	358	MRI1 "Methylthioribose-1-phosp	0.414	0.156	0.517	9.7e-12
UNIPROTKB|J9P6Q4	358	MRI1 "Methylthioribose-1-phosp	0.414	0.156	0.535	1.2e-11
UNIPROTKB|E2R7C2	368	MRI1 "Methylthioribose-1-phosp	0.414	0.152	0.535	1.3e-11
UNIPROTKB|Q2NL31	358	MRI1 "Methylthioribose-1-phosp	0.414	0.156	0.535	1.6e-11
ZFIN|ZDB-GENE-080204-109	353	mri1 "methylthioribose-1-phosp	0.385	0.147	0.557	2e-11
MGI|MGI:1915123	369	Mri1 "methylthioribose-1-phosp	0.385	0.140	0.576	2.9e-11
UNIPROTKB|Q9BV20	369	MRI1 "Methylthioribose-1-phosp	0.414	0.151	0.517	3.7e-11
RGD|1307789	369	Mri1 "methylthioribose-1-phosp	0.385	0.140	0.557	4.8e-11
UNIPROTKB|Q7NP62	348	mtnA "Methylthioribose-1-phosp	0.348	0.135	0.468	1.2e-10

FB|FBgn0039849 CG11334 [Drosophila melanogaster (taxid:7227)]

 Score = 184 (69.8 bits), Expect = 8.0e-14, P = 8.0e-14
 Identities = 36/52 (69%), Positives = 41/52 (78%)

Query:    11 QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAA 62
             QIAV AKHH VPF++AAP TSIDL IP GD I+IEERP +EMTHV    +AA
Sbjct:   270 QIAVVAKHHDVPFYVAAPLTSIDLAIPGGDHIIIEERPDREMTHVGEHRIAA 321

GO:0045182 "translation regulator activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=ISS

GO:0035220 "wing disc development" evidence=IGI

GO:0019509 "L-methionine salvage from methylthioadenosine" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0046523 "S-methyl-5-thioribose-1-phosphate isomerase activity" evidence=IBA

UNIPROTKB|F1SD78 MRI1 "Methylthioribose-1-phosphate isomerase" [Sus scrofa (taxid:9823)]

 Score = 165 (63.1 bits), Expect = 9.7e-12, P = 9.7e-12
 Identities = 29/56 (51%), Positives = 42/56 (75%)

Query:    11 QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCG 66
             Q+A++AKHH +PF++AAP +S DL + +G  I+IEERP QE+T V G+ +AA   G
Sbjct:   264 QLAIAAKHHGIPFYVAAPSSSCDLRLESGQEIIIEERPGQELTDVNGVRIAAPGIG 319

GO:0019509 "L-methionine salvage from methylthioadenosine" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0019284 "L-methionine biosynthetic process from S-adenosylmethionine" evidence=IEA

GO:0046523 "S-methyl-5-thioribose-1-phosphate isomerase activity" evidence=IEA

UNIPROTKB|J9P6Q4 MRI1 "Methylthioribose-1-phosphate isomerase" [Canis lupus familiaris (taxid:9615)]

 Score = 164 (62.8 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 30/56 (53%), Positives = 41/56 (73%)

Query:    11 QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCG 66
             Q+A++AKHH +PF++AAP +S DL +  G  IVIEERP QE+T V G+ +AA   G
Sbjct:   264 QLAIAAKHHGIPFYVAAPSSSCDLRLETGKEIVIEERPGQELTDVNGVRIAAPGIG 319

GO:0019509 "L-methionine salvage from methylthioadenosine" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0019284 "L-methionine biosynthetic process from S-adenosylmethionine" evidence=IEA

GO:0046523 "S-methyl-5-thioribose-1-phosphate isomerase activity" evidence=IEA

UNIPROTKB|E2R7C2 MRI1 "Methylthioribose-1-phosphate isomerase" [Canis lupus familiaris (taxid:9615)]

 Score = 164 (62.8 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 30/56 (53%), Positives = 41/56 (73%)

Query:    11 QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCG 66
             Q+A++AKHH +PF++AAP +S DL +  G  IVIEERP QE+T V G+ +AA   G
Sbjct:   264 QLAIAAKHHGIPFYVAAPSSSCDLRLETGKEIVIEERPGQELTDVNGVRIAAPGIG 319

GO:0019509 "L-methionine salvage from methylthioadenosine" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0019284 "L-methionine biosynthetic process from S-adenosylmethionine" evidence=IEA

GO:0046523 "S-methyl-5-thioribose-1-phosphate isomerase activity" evidence=IEA

UNIPROTKB|Q2NL31 MRI1 "Methylthioribose-1-phosphate isomerase" [Bos taurus (taxid:9913)]

 Score = 163 (62.4 bits), Expect = 1.6e-11, P = 1.6e-11
 Identities = 30/56 (53%), Positives = 41/56 (73%)

Query:    11 QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCG 66
             Q+A++AKHH +PF++AAP +S DL +  G  IVIEERP QE+T V G+ +AA   G
Sbjct:   264 QLAIAAKHHGIPFYVAAPSSSCDLRLETGREIVIEERPDQELTDVNGVRIAAPGIG 319

GO:0046523 "S-methyl-5-thioribose-1-phosphate isomerase activity" evidence=IBA

GO:0019509 "L-methionine salvage from methylthioadenosine" evidence=IEA;IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0005634 "nucleus" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0019284 "L-methionine biosynthetic process from S-adenosylmethionine" evidence=IEA

ZFIN|ZDB-GENE-080204-109 mri1 "methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 162 (62.1 bits), Expect = 2.0e-11, P = 2.0e-11
 Identities = 29/52 (55%), Positives = 42/52 (80%)

Query:    11 QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAA 62
             Q+A++AKHH +PF++AAP TS DL + +G  IVIEERP++E+T + G+ VAA
Sbjct:   257 QLAIAAKHHGIPFYVAAPSTSCDLSLESGRDIVIEERPAEELTSINGVPVAA 308

GO:0044249 "cellular biosynthetic process" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0046523 "S-methyl-5-thioribose-1-phosphate isomerase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0009086 "methionine biosynthetic process" evidence=IEA

GO:0019284 "L-methionine biosynthetic process from S-adenosylmethionine" evidence=IEA

MGI|MGI:1915123 Mri1 "methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 161 (61.7 bits), Expect = 2.9e-11, P = 2.9e-11
 Identities = 30/52 (57%), Positives = 40/52 (76%)

Query:    11 QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAA 62
             Q+A+ AKHH VPF++AAP +S DL +  G  IVIEERPSQE+T + G+ +AA
Sbjct:   264 QLAIVAKHHGVPFYVAAPSSSCDLHLETGKEIVIEERPSQELTDLNGVRIAA 315

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IBA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0009086 "methionine biosynthetic process" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0019509 "L-methionine salvage from methylthioadenosine" evidence=IBA

GO:0042802 "identical protein binding" evidence=ISO

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0044249 "cellular biosynthetic process" evidence=IEA

GO:0046523 "S-methyl-5-thioribose-1-phosphate isomerase activity" evidence=IBA

UNIPROTKB|Q9BV20 MRI1 "Methylthioribose-1-phosphate isomerase" [Homo sapiens (taxid:9606)]

 Score = 160 (61.4 bits), Expect = 3.7e-11, P = 3.7e-11
 Identities = 29/56 (51%), Positives = 40/56 (71%)

Query:    11 QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCG 66
             Q+A+ AKHH +PF++AAP +S DL +  G  I+IEERP QE+T V G+ +AA   G
Sbjct:   264 QLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEERPGQELTDVNGVRIAAPGIG 319

GO:0019284 "L-methionine biosynthetic process from S-adenosylmethionine" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0019509 "L-methionine salvage from methylthioadenosine" evidence=IEA;IBA;TAS

GO:0005737 "cytoplasm" evidence=IBA

GO:0046523 "S-methyl-5-thioribose-1-phosphate isomerase activity" evidence=IBA

GO:0000096 "sulfur amino acid metabolic process" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006595 "polyamine metabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0042802 "identical protein binding" evidence=IPI

RGD|1307789 Mri1 "methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 159 (61.0 bits), Expect = 4.8e-11, P = 4.8e-11
 Identities = 29/52 (55%), Positives = 40/52 (76%)

Query:    11 QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAA 62
             Q+A+ AKHH +PF++AAP +S DL +  G  IVIEERPSQE+T + G+ +AA
Sbjct:   264 QLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIVIEERPSQELTDLNGVRIAA 315

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IBA

GO:0019284 "L-methionine biosynthetic process from S-adenosylmethionine" evidence=IEA

GO:0019509 "L-methionine salvage from methylthioadenosine" evidence=IEA;IBA

GO:0042802 "identical protein binding" evidence=IEA;ISO

GO:0046523 "S-methyl-5-thioribose-1-phosphate isomerase activity" evidence=IBA

UNIPROTKB|Q7NP62 mtnA "Methylthioribose-1-phosphate isomerase" [Gloeobacter violaceus PCC 7421 (taxid:251221)]

 Score = 140 (54.3 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
 Identities = 22/47 (46%), Positives = 38/47 (80%)

Query:    12 IAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGI 58
             +A+ A+H+ VPFF+AAPW+++DL++ +G+ I IE+R S+EM  + G+
Sbjct:   255 VAIIARHYGVPFFVAAPWSTVDLNLSSGEQIPIEQRDSEEMRAIEGV 301

GO:0005737 "cytoplasm" evidence=IBA

GO:0019509 "L-methionine salvage from methylthioadenosine" evidence=IBA

GO:0046523 "S-methyl-5-thioribose-1-phosphate isomerase activity" evidence=IBA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7PKS9	MTNA_ANOGA	5, ., 3, ., 1, ., 2, 3	0.5714	0.4148	0.1595	yes	N/A
Q0VFN1	MTNA_XENTR	5, ., 3, ., 1, ., 2, 3	0.5178	0.4148	0.1581	yes	N/A
Q2NL31	MTNA_BOVIN	5, ., 3, ., 1, ., 2, 3	0.5357	0.4148	0.1564	yes	N/A
Q9BV20	MTNA_HUMAN	5, ., 3, ., 1, ., 2, 3	0.5178	0.4148	0.1517	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	135
TIGR00512	331	TIGR00512, salvage_mtnA, S-methyl-5-thioribose-1-p	2e-22
PRK05720	344	PRK05720, mtnA, methylthioribose-1-phosphate isome	3e-18
COG0182	346	COG0182, COG0182, Predicted translation initiation	2e-15
pfam01008	281	pfam01008, IF-2B, Initiation factor 2 subunit fami	1e-11
TIGR00524	303	TIGR00524, eIF-2B_rel, eIF-2B alpha/beta/delta-rel	8e-11
PRK08334	356	PRK08334, PRK08334, translation initiation factor	5e-09
PRK06371	329	PRK06371, PRK06371, translation initiation factor	3e-08
PRK06036	339	PRK06036, PRK06036, translation initiation factor	7e-06
PRK08535	310	PRK08535, PRK08535, translation initiation factor	0.001
PRK05772	363	PRK05772, PRK05772, translation initiation factor	0.003

>gnl|CDD|233003 TIGR00512, salvage_mtnA, S-methyl-5-thioribose-1-phosphate isomerase

 Score = 89.6 bits (223), Expect = 2e-22
 Identities = 29/54 (53%), Positives = 40/54 (74%)

Query: 11  QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASD 64
           Q+AV AKHH VPF++AAP ++IDL+  +G  I IEERP +E+THV G+ +A   
Sbjct: 250 QLAVLAKHHGVPFYVAAPTSTIDLETKDGAEIPIEERPPEEVTHVGGVRIAPPG 303

The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA [Amino acid biosynthesis, Aspartate family]. Length = 331

>gnl|CDD|235578 PRK05720, mtnA, methylthioribose-1-phosphate isomerase; Reviewed

 Score = 78.3 bits (194), Expect = 3e-18
 Identities = 25/55 (45%), Positives = 39/55 (70%)

Query: 10  LQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASD 64
            Q+A++AK+H VPF++AAP ++IDL + +G  I IEER  +E+T V G+ +A   
Sbjct: 249 YQLAIAAKYHGVPFYVAAPSSTIDLTLADGKEIPIEERDPEEVTEVGGVRIAPEG 303

Length = 344

>gnl|CDD|223260 COG0182, COG0182, Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]

 Score = 70.4 bits (173), Expect = 2e-15
 Identities = 24/55 (43%), Positives = 38/55 (69%)

Query: 10  LQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASD 64
            Q+AV AKHH +PF++AAP ++ID ++ +G+ I IEER  +E+  V G+ +A   
Sbjct: 252 YQLAVLAKHHGIPFYVAAPLSTIDFELKSGEDIPIEERDPEEVLEVGGVRIAPEG 306

Length = 346

>gnl|CDD|216240 pfam01008, IF-2B, Initiation factor 2 subunit family

 Score = 59.6 bits (145), Expect = 1e-11
 Identities = 19/57 (33%), Positives = 30/57 (52%)

Query: 10  LQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCG 66
            Q+A+ AK H VPF++ A     D   P  + I IEER  +E+ +  G+ +A  +  
Sbjct: 199 YQLALLAKAHNVPFYVVAETYKFDPRFPLDEDIFIEERDPEEVLYRTGVRIAPENLK 255

This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes, initiation factor 2B subunits 1 and 2 from archaebacteria and some proteins of unknown function from prokaryotes. Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. Members of this family have also been characterized as 5-methylthioribose- 1-phosphate isomerases, an enzyme of the methionine salvage pathway. The crystal structure of Ypr118w, a non-essential, low-copy number gene product from Saccharomyces cerevisiae, reveals a dimeric protein with two domains and a putative active site cleft. Length = 281

>gnl|CDD|233008 TIGR00524, eIF-2B_rel, eIF-2B alpha/beta/delta-related uncharacterized proteins

 Score = 57.5 bits (139), Expect = 8e-11
 Identities = 23/55 (41%), Positives = 34/55 (61%)

Query: 10  LQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASD 64
            Q+AV AK  ++PFF+AAP ++ D     G+ IVIEER  +E+  V G+ +A   
Sbjct: 221 YQLAVLAKEFRIPFFVAAPLSTFDTKTSCGEDIVIEERDPEEVAQVGGVRIAPLG 275

This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins [Unknown function, General]. Length = 303

>gnl|CDD|169386 PRK08334, PRK08334, translation initiation factor IF-2B subunit beta; Validated

 Score = 52.7 bits (126), Expect = 5e-09
 Identities = 21/50 (42%), Positives = 31/50 (62%)

Query: 12  IAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVA 61
           +AV AK H +PFF  AP ++ID+ + +G  I IEER  +E+    G  +A
Sbjct: 264 LAVLAKEHGIPFFTVAPLSTIDMSLKSGKEIPIEERSPEEVLTCGGCRIA 313

Length = 356

>gnl|CDD|180547 PRK06371, PRK06371, translation initiation factor IF-2B subunit alpha; Provisional

 Score = 50.3 bits (120), Expect = 3e-08
 Identities = 20/56 (35%), Positives = 33/56 (58%)

Query: 13  AVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSK 68
           AV AK + +PF++AAP ++ D  I +GD I IEER   E+  + G  +   +  ++
Sbjct: 242 AVLAKVNGIPFYVAAPGSTFDFSIKSGDEIPIEERDENEVLEINGCRIGPQESHAR 297

Length = 329

>gnl|CDD|180362 PRK06036, PRK06036, translation initiation factor IF-2B subunit alpha; Provisional

 Score = 43.6 bits (103), Expect = 7e-06
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 13  AVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASD 64
           +V AK H++PF++AAP ++ D +   G  + IEER   E+ +     +A  D
Sbjct: 252 SVLAKEHEIPFYVAAPLSTFDFEGWEGS-VKIEERDPDELRYCGKTQIAPKD 302

Length = 339

>gnl|CDD|236282 PRK08535, PRK08535, translation initiation factor IF-2B subunit delta; Provisional

 Score = 37.2 bits (87), Expect = 0.001
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 12/47 (25%)

Query: 11  QIAVSAKHHKVPFFIAA------PWTSIDLDIPNGDAIVIEERPSQE 51
           QIA++A   +VPF +AA      P T +      G+ + IEER   E
Sbjct: 213 QIALAAHEARVPFMVAAETYKFSPKTLL------GELVEIEERDPTE 253

Length = 310

>gnl|CDD|168237 PRK05772, PRK05772, translation initiation factor IF-2B subunit alpha; Provisional

 Score = 36.3 bits (84), Expect = 0.003
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 13  AVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASD 64
           AV A    +PF+  AP ++ DL   + + + IEER   E+  + G+ +   D
Sbjct: 273 AVIAHELGIPFYALAPTSTFDL-KSDVNDVKIEERDPNEVRTIRGVPITPED 323

Length = 363

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	135
COG0182	346	Predicted translation initiation factor 2B subunit	99.96
KOG1468|consensus	354		99.93
PRK05720	344	mtnA methylthioribose-1-phosphate isomerase; Revie	99.93
PRK06371	329	translation initiation factor IF-2B subunit alpha;	99.93
PRK06036	339	translation initiation factor IF-2B subunit alpha;	99.92
PRK08334	356	translation initiation factor IF-2B subunit beta;	99.92
PRK05772	363	translation initiation factor IF-2B subunit alpha;	99.92
TIGR00512	331	salvage_mtnA S-methyl-5-thioribose-1-phosphate iso	99.92
TIGR00524	303	eIF-2B_rel eIF-2B alpha/beta/delta-related unchara	99.91
PRK08535	310	translation initiation factor IF-2B subunit delta;	99.9
TIGR00511	301	ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e	99.9
PRK08335	275	translation initiation factor IF-2B subunit alpha;	99.87
PF01008	282	IF-2B: Initiation factor 2 subunit family; InterPr	99.84
KOG1465|consensus	353		99.83
COG1184	301	GCD2 Translation initiation factor 2B subunit, eIF	99.81
PRK06372	253	translation initiation factor IF-2B subunit delta;	99.68
KOG1466|consensus	313		99.48
KOG1467|consensus	556		98.83

>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=5e-30  Score=217.99  Aligned_cols=85  Identities=31%  Similarity=0.502  Sum_probs=80.8

Q ss_pred             ccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------cce
Q psy6711           3 IKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------HSG   76 (135)
Q Consensus         3 i~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------isg   76 (135)
                      +-||||||++|++||||||||||+||.+|||+...+|++|+||||+|+||+.++|.+++|+++++||||||      |+|
T Consensus       245 vaNKIGTY~lAvlAk~~gIPFyVaAP~sTiD~~~~~G~~I~IEER~p~Ev~~v~g~riap~~v~~yNPAFDvTP~~lItg  324 (346)
T COG0182         245 VANKIGTYQLAVLAKHHGIPFYVAAPLSTIDFELKSGEDIPIEERDPEEVLEVGGVRIAPEGVEAYNPAFDVTPPELITG  324 (346)
T ss_pred             chhhhhHHHHHHHHHHcCCCeEEEcccCccccccCCCCccceeecCHHHeEeeccEEeCCCCccccCccccCChHHhcce
Confidence            56999999999999999999999999999999999999999999999999999999999999999999999      999


Q ss_pred             eeecCCCCCCc
Q psy6711          77 SINKVEDLPEM   87 (135)
Q Consensus        77 ~It~v~~~~~~   87 (135)
                      +|||=|=+.|+
T Consensus       325 IITEkGv~~p~  335 (346)
T COG0182         325 IITEKGVFTPP  335 (346)
T ss_pred             eeeccceecCc
Confidence            99995546665

>KOG1468|consensus

Probab=99.93  E-value=2.4e-27  Score=199.70  Aligned_cols=86  Identities=41%  Similarity=0.618  Sum_probs=80.8

Q ss_pred             cchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCcccccccc---CeeecCCCceeEeeeec------c
Q psy6711           4 KPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVA---GIHVAASDCGSKGTFQS------H   74 (135)
Q Consensus         4 ~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~---g~~iap~~v~V~NPAFD------i   74 (135)
                      -||+||||+|++||||||||||+||.+++|...++|++|.||||+|.|++++.   |.+++++++.|||||||      |
T Consensus       251 ANKIGTy~LAv~aKhhgipFyvaaP~tsid~~l~tG~eIiIEERp~~Em~~v~gg~~v~Iaapgi~vwnPAFDvTPa~LI  330 (354)
T KOG1468|consen  251 ANKIGTYQLAVLAKHHGIPFYVAAPFTSIDLSLATGDEIIIEERPPAEMTHVTGGEGVRIAAPGINVWNPAFDVTPAELI  330 (354)
T ss_pred             hhhhhhhHHHHHHHhcCCceEEeccccccccccCCCCeeEEeecCchHheeecCCcceEecCCCCCccCccccCCHHHHH
Confidence            38999999999999999999999999999999999999999999999999999   77899999999999999      9


Q ss_pred             ceeeecCCCCCCcee
Q psy6711          75 SGSINKVEDLPEMSI   89 (135)
Q Consensus        75 sg~It~v~~~~~~~i   89 (135)
                      +|+|||-|-|+|-+-
T Consensus       331 tgIiTe~g~f~~~~~  345 (354)
T KOG1468|consen  331 TGIITEKGVFTPEEL  345 (354)
T ss_pred             HHHhhhccccChHHh
Confidence            999999776777553

>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed

Probab=99.93  E-value=6.1e-27  Score=199.42  Aligned_cols=88  Identities=31%  Similarity=0.457  Sum_probs=85.1

Q ss_pred             CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------cc
Q psy6711           2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------HS   75 (135)
Q Consensus         2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------is   75 (135)
                      |+.||+|||++|++||+|+|||||+||++|||+.+++|++++||+|+|+|++.+.|.+++|++++++||+||      ||
T Consensus       241 ~v~NkiGT~~lAl~Ak~~~vPfyV~a~~~kfd~~~~~g~~i~iE~r~~~ev~~~~~~~~~~~~v~v~Np~FDvTP~~lIt  320 (344)
T PRK05720        241 DVANKIGTYQLAIAAKYHGVPFYVAAPSSTIDLTLADGKEIPIEERDPEEVTEVGGVRIAPEGVKVYNPAFDVTPAELIT  320 (344)
T ss_pred             CEeehhhHHHHHHHHHHhCCCEEEeccccccCcCCCCCcccccccCCHHHhcccCCcccCCCCceeecccccCCCHHHCC
Confidence            589999999999999999999999999999999999999999999999999999998889999999999999      99


Q ss_pred             eeeecCCCCCCcee
Q psy6711          76 GSINKVEDLPEMSI   89 (135)
Q Consensus        76 g~It~v~~~~~~~i   89 (135)
                      ++|||.|.++|+++
T Consensus       321 ~iITE~Gv~~p~~~  334 (344)
T PRK05720        321 GIITEKGIVAPPDT  334 (344)
T ss_pred             EEEcCCCccCccHH
Confidence            99999999999976

>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional

Probab=99.93  E-value=8.7e-27  Score=197.92  Aligned_cols=89  Identities=25%  Similarity=0.374  Sum_probs=85.7

Q ss_pred             CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------cc
Q psy6711           2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------HS   75 (135)
Q Consensus         2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------is   75 (135)
                      |+.||+|||++|++||+|+||||||||++|||+....|++|+||+|+|+|++.+.|.+++|++++++||+||      |+
T Consensus       231 ~v~NKiGT~~lAl~Ak~~~VPfyV~a~~~t~d~~~~~g~~i~iEer~~~ev~~~~g~~~~p~~~~v~Np~FDvTP~elIt  310 (329)
T PRK06371        231 DFANKIGTYEKAVLAKVNGIPFYVAAPGSTFDFSIKSGDEIPIEERDENEVLEINGCRIGPQESHARNPAFDVTPNEYVT  310 (329)
T ss_pred             CEeehhhHHHHHHHHHHcCCCEEEeccccccCCCCCCcCccccccCCHHHeeccCCeecCCCCccccCcCccCCCHHHCC
Confidence            589999999999999999999999999999999999999999999999999999999999999999999999      99


Q ss_pred             eeeecCCCCCCceeE
Q psy6711          76 GSINKVEDLPEMSIV   90 (135)
Q Consensus        76 g~It~v~~~~~~~i~   90 (135)
                      ++|||.|.++|++|.
T Consensus       311 ~iITE~Gv~~p~~i~  325 (329)
T PRK06371        311 GFITEYGIFKPNELW  325 (329)
T ss_pred             EEEccCCccChHHhh
Confidence            999999999999873

>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional

Probab=99.92  E-value=4.9e-26  Score=193.78  Aligned_cols=87  Identities=22%  Similarity=0.284  Sum_probs=83.0

Q ss_pred             CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------cc
Q psy6711           2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------HS   75 (135)
Q Consensus         2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------is   75 (135)
                      |+.||+|||++|++||+|+|||||+||++|||+....| +|+||+|+|+|++.+.|.+++|++++++||+||      |+
T Consensus       241 Gv~NKiGT~~lA~~Ak~~~vPfyV~ap~s~~d~~~~~g-~i~iE~r~~~Ev~~~~~~~~~~~~v~v~Np~FDvTP~~lIt  319 (339)
T PRK06036        241 AVFNKIGTYTHSVLAKEHEIPFYVAAPLSTFDFEGWEG-SVKIEERDPDELRYCGKTQIAPKDVPVYNPAFDATPMENVT  319 (339)
T ss_pred             CeehhhhHHHHHHHHHHhCCCEEEEeecCccCCCcCCC-CcccccCCHHHhccccCcccCCCCceeeCcccccCCHHHCC
Confidence            78999999999999999999999999999999999888 899999999999999988889999999999999      99


Q ss_pred             eeeecCCCCCCcee
Q psy6711          76 GSINKVEDLPEMSI   89 (135)
Q Consensus        76 g~It~v~~~~~~~i   89 (135)
                      ++|||.|-+.|++.
T Consensus       320 ~iITE~Gv~~P~~~  333 (339)
T PRK06036        320 AIITEKGVFYPPFL  333 (339)
T ss_pred             EEEccCCcccCCcc
Confidence            99999999988865

>PRK08334 translation initiation factor IF-2B subunit beta; Validated

Probab=99.92  E-value=5.3e-26  Score=194.90  Aligned_cols=87  Identities=28%  Similarity=0.364  Sum_probs=83.0

Q ss_pred             CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------cc
Q psy6711           2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------HS   75 (135)
Q Consensus         2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------is   75 (135)
                      |+.||+|||++|++||+|+||||||||++|+|+.++++++++||+|+|+||+.+.|.+++| +++++||+||      |+
T Consensus       254 ~v~NKiGTy~lA~~Ak~~~vPfyV~Ap~~t~d~~~~~~~~i~iE~r~~~ev~~~~~~~~~~-~~~v~NPaFDvTPp~lIt  332 (356)
T PRK08334        254 DFANKIGTYTLAVLAKEHGIPFFTVAPLSTIDMSLKSGKEIPIEERSPEEVLTCGGCRIAP-DVDVYNPAFDVTPHKYLT  332 (356)
T ss_pred             CEeehhhHHHHHHHHHHhCCCEEEEcccCccCCCCCCCcccccccCChHHheeccCcccCC-CcceecccccCCCHHHCC
Confidence            6899999999999999999999999999999999999999999999999999998887776 8999999999      99


Q ss_pred             eeeecCCCCCCcee
Q psy6711          76 GSINKVEDLPEMSI   89 (135)
Q Consensus        76 g~It~v~~~~~~~i   89 (135)
                      ++|||.|.+.|++.
T Consensus       333 ~iITE~Gv~~P~~~  346 (356)
T PRK08334        333 GIITDRGVVWPPFE  346 (356)
T ss_pred             EEEcCCCccCCchH
Confidence            99999999999876

>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional

Probab=99.92  E-value=7.6e-26  Score=194.23  Aligned_cols=87  Identities=21%  Similarity=0.255  Sum_probs=82.7

Q ss_pred             CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------cc
Q psy6711           2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------HS   75 (135)
Q Consensus         2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------is   75 (135)
                      |+.||+|||++|++||+|+|||||+||++|||+.++. ++|+||||+|+|++.+.|.+++|++++++||+||      |+
T Consensus       262 ~v~NKiGTy~lA~~Ak~~~vPfyV~ap~~k~d~~~~~-~~i~ieer~p~ev~~~~~~~~~~~~~~v~Np~FDvTP~~lIt  340 (363)
T PRK05772        262 HVFNKIGTFKEAVIAHELGIPFYALAPTSTFDLKSDV-NDVKIEERDPNEVRTIRGVPITPEDVNVYNPVFDVTPPKYIT  340 (363)
T ss_pred             CEeehhhhHHHHHHHHHhCCCEEEEccccccCccccc-cccccccCCHHHhcccCCceecCCCceeeccCccCCCHHHCC
Confidence            5889999999999999999999999999999999988 7999999999999999999889999999999999      99


Q ss_pred             eeeecCCCCCCcee
Q psy6711          76 GSINKVEDLPEMSI   89 (135)
Q Consensus        76 g~It~v~~~~~~~i   89 (135)
                      ++|||.|-+.|++-
T Consensus       341 ~iITE~Gv~~p~~~  354 (363)
T PRK05772        341 GIITEKGIIYPPFH  354 (363)
T ss_pred             EEEccCCccCCchH
Confidence            99999999988754

>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase

Probab=99.92  E-value=1.1e-25  Score=190.99  Aligned_cols=85  Identities=36%  Similarity=0.536  Sum_probs=81.1

Q ss_pred             CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------cc
Q psy6711           2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------HS   75 (135)
Q Consensus         2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------is   75 (135)
                      |+.||+|||++|++||+|+|||||+||++|||+.+++|++++||+|+|+|++.+.|..++|++++++||+||      |+
T Consensus       241 ~v~nkiGT~~lA~~Ak~~~vPfyV~a~~~kfd~~~~~~~~i~iE~r~p~ev~~~~g~~~~~~~~~v~Np~FD~TP~~lIt  320 (331)
T TIGR00512       241 DTANKIGTYQLAVLAKHHGVPFYVAAPTSTIDLETKDGAEIPIEERPPEEVTHVGGVRIAPPGIDVWNPAFDVTPAELIT  320 (331)
T ss_pred             CEeehhhHHHHHHHHHHhCCCEEEeccccccccCCCCccccccccCCHHHhcccCCcccCCCCceeecccccCCCHHHCC
Confidence            589999999999999999999999999999999999999999999999999999998888999999999999      99


Q ss_pred             eeeecCCCCCC
Q psy6711          76 GSINKVEDLPE   86 (135)
Q Consensus        76 g~It~v~~~~~   86 (135)
                      ++|||.|-+.|
T Consensus       321 ~iITe~Gv~~p  331 (331)
T TIGR00512       321 GIITEKGVITP  331 (331)
T ss_pred             EEEccCCccCC
Confidence            99999887654

The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.

>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins

Probab=99.91  E-value=5.6e-25  Score=184.15  Aligned_cols=85  Identities=28%  Similarity=0.420  Sum_probs=81.5

Q ss_pred             CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------cc
Q psy6711           2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------HS   75 (135)
Q Consensus         2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------is   75 (135)
                      |+.||+|||++|++||+|+|||||+||++|||+.+++|+++++|+|+|+|++.+.|.+.+|++++++||+||      |+
T Consensus       213 ~v~nk~GT~~lA~~Ak~~~vPv~V~a~s~K~~~~~~~g~~i~~e~~~~~ev~~~~~~~~~~~~~~v~np~fD~TP~~lIt  292 (303)
T TIGR00524       213 DVANKIGTYQLAVLAKEFRIPFFVAAPLSTFDTKTSCGEDIVIEERDPEEVAQVGGVRIAPLGVKVYNPAFDITPHDLID  292 (303)
T ss_pred             CEeEhhhHHHHHHHHHHhCCCEEEecccccccCCCCCccccccccCCHHHhccccCcccCCCCceeecccccCCCHHHCC
Confidence            589999999999999999999999999999999999999999999999999999888888899999999999      99


Q ss_pred             eeeecCCCCCC
Q psy6711          76 GSINKVEDLPE   86 (135)
Q Consensus        76 g~It~v~~~~~   86 (135)
                      ++|||.|-++|
T Consensus       293 ~iiTe~Gv~~p  303 (303)
T TIGR00524       293 AIITEKGIITP  303 (303)
T ss_pred             EEEcCCCccCc
Confidence            99999998876

This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.

>PRK08535 translation initiation factor IF-2B subunit delta; Provisional

Probab=99.90  E-value=9.3e-25  Score=182.65  Aligned_cols=87  Identities=21%  Similarity=0.223  Sum_probs=81.4

Q ss_pred             CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------cc
Q psy6711           2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------HS   75 (135)
Q Consensus         2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------is   75 (135)
                      |+.||+|||++|++||+|+|||||+||++||++.++.+++++||+|+++|++... ....+++++++||+||      |+
T Consensus       204 ~v~nkiGT~~~A~~Ak~~~vPv~V~a~~~K~~~~~~~~~~~~ie~~~~~ev~~~~-~~~~~~~v~v~np~fD~tP~~lIt  282 (310)
T PRK08535        204 AVINKIGTSQIALAAHEARVPFMVAAETYKFSPKTLLGELVEIEERDPTEVLPEE-ILAKLPGVKVRNPAFDVTPPEYID  282 (310)
T ss_pred             CEEeHHhHHHHHHHHHHhCCCEEEecccceecCCCCCCCcceecccCHHHhcccc-cccCCCCceeeccCcccCCHHHCC
Confidence            6899999999999999999999999999999999999999999999999999773 3356789999999999      99


Q ss_pred             eeeecCCCCCCcee
Q psy6711          76 GSINKVEDLPEMSI   89 (135)
Q Consensus        76 g~It~v~~~~~~~i   89 (135)
                      ++|||.|.+||+++
T Consensus       283 ~iiTe~Gi~~ps~v  296 (310)
T PRK08535        283 AIITEIGAIPPEMA  296 (310)
T ss_pred             EEEeCCCcCChHHH
Confidence            99999999999887

>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family

Probab=99.90  E-value=8.1e-25  Score=182.55  Aligned_cols=87  Identities=20%  Similarity=0.244  Sum_probs=82.2

Q ss_pred             CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------cc
Q psy6711           2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------HS   75 (135)
Q Consensus         2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------is   75 (135)
                      |+.||+|||++|++||+|+|||||+||++||++.++.+++++||+|+|+|++.+.+. ..+++++++||+||      |+
T Consensus       199 ~v~nkiGT~~lA~~Ak~~~vPv~V~a~~~K~~~~~~~~~~~~ie~~~~~ev~~~~~~-~~~~~~~v~np~fD~tP~~lIt  277 (301)
T TIGR00511       199 ALINKIGTSQLALAAREARVPFMVAAETYKFHPKTITGELVEIEERDPTEVLDEEDL-KQLGAVKVRNPAFDVTPAEYID  277 (301)
T ss_pred             CEEEHHhHHHHHHHHHHhCCCEEEEcccceecCCCCCCCcccccccCHHHhccccCc-cCCCCccccCcceecCCHHHCC
Confidence            589999999999999999999999999999999999999999999999999988765 46678999999999      99


Q ss_pred             eeeecCCCCCCcee
Q psy6711          76 GSINKVEDLPEMSI   89 (135)
Q Consensus        76 g~It~v~~~~~~~i   89 (135)
                      ++|||.|.+||+++
T Consensus       278 ~iITe~Gi~~p~~i  291 (301)
T TIGR00511       278 AIITEVGQIPPEMA  291 (301)
T ss_pred             EEEeCCCcCCcHHH
Confidence            99999999999887

The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.

>PRK08335 translation initiation factor IF-2B subunit alpha; Validated

Probab=99.87  E-value=1.3e-22  Score=168.74  Aligned_cols=75  Identities=17%  Similarity=0.224  Sum_probs=69.7

Q ss_pred             CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------cc
Q psy6711           2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------HS   75 (135)
Q Consensus         2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------is   75 (135)
                      |+.||+|||++|++||+|+|||||+||++|||+.+.++ +++||||++           .+++++++||+||      |+
T Consensus       193 ~v~NKiGT~~lA~~Ak~~~vPfyV~a~~~k~~~~~~~~-~i~ieer~~-----------~~~~~~v~Np~FDvTP~~lIt  260 (275)
T PRK08335        193 YVVNKAGTYLLALACHDNGVPFYVAAETFKFHPELKSE-EVELVERPY-----------ARQGHRVRNVLFDVTPWKYVR  260 (275)
T ss_pred             CEeehhhHHHHHHHHHHcCCCEEEECccceecccCCCC-CccccccCC-----------CCCCceecCcCccCCCHHHCC
Confidence            58999999999999999999999999999999999998 899999976           3688999999999      99


Q ss_pred             eeeecCCCCCCce
Q psy6711          76 GSINKVEDLPEMS   88 (135)
Q Consensus        76 g~It~v~~~~~~~   88 (135)
                      ++|||.|-+.|+.
T Consensus       261 ~iITE~Gv~~p~~  273 (275)
T PRK08335        261 GIITELGILVPPR  273 (275)
T ss_pred             EEEccCCccCCCC
Confidence            9999999987764

>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit

Probab=99.84  E-value=9.2e-22  Score=159.28  Aligned_cols=85  Identities=21%  Similarity=0.240  Sum_probs=72.5

Q ss_pred             CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------cc
Q psy6711           2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------HS   75 (135)
Q Consensus         2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------is   75 (135)
                      |+.||+|||++|++||+|+|||||+|+++||++.++.+++..+|+|+++|++...+....+++++++||.||      |+
T Consensus       192 ~v~nk~Gt~~~a~~Ak~~~vPv~v~~~~~K~~~~~~~~~~~~~e~~~~~~v~~~~~~~~~~~~v~~~~p~~D~tP~~~It  271 (282)
T PF01008_consen  192 GVVNKVGTLQLALAAKEFNVPVYVLAESYKFSPRYPLDQDSFNELRDPQEVLPFDGSSIVPENVDVINPLFDYTPPDLIT  271 (282)
T ss_dssp             -EEEETTHHHHHHHHHHTT-EEEEE--GGGBETTCSSGGGSSS-B--THHHHEETTEEESTTTEEEE-BSEEEEEGGG-S
T ss_pred             CEeehhhHHHHHHHHHhhCCCEEEEcccccccccccccchhhhhccccceeeccCCcccccceeeccCccEeecCHHHCC
Confidence            499999999999999999999999999999999999999999999999999999998888889999999999      99


Q ss_pred             eeeecCCCCCC
Q psy6711          76 GSINKVEDLPE   86 (135)
Q Consensus        76 g~It~v~~~~~   86 (135)
                      ++|||.|.++|
T Consensus       272 ~~iTe~G~~~P  282 (282)
T PF01008_consen  272 LIITELGILPP  282 (282)
T ss_dssp             EEEETTEEE-C
T ss_pred             EEEcCCCCCCc
Confidence            99999988877

The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....

>KOG1465|consensus

Probab=99.83  E-value=1.2e-21  Score=166.35  Aligned_cols=88  Identities=18%  Similarity=0.183  Sum_probs=82.1

Q ss_pred             CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------cc
Q psy6711           2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------HS   75 (135)
Q Consensus         2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------is   75 (135)
                      |+++..|+|++|++||||.+||||+||+||++|.+++..|.++|.|+|+|++++.... ....++++||+||      |+
T Consensus       246 gl~~~~G~~~vAlaAk~h~vPv~VlAp~yKLsPlyp~~~ds~~~f~s~~~il~~~e~~-~~~~~~v~nP~fDyvppeLVt  324 (353)
T KOG1465|consen  246 GLRAPSGVHTVALAAKHHSVPVIVLAPMYKLSPLYPTNPDSFHEFRSPSEILPFSEGD-PAGRVDVLNPAFDYVPPELVT  324 (353)
T ss_pred             CeeccchHHHHHHHHHhcCCcEEEecchhhcCCCCCCCHHHHHhcCCcccccCccccC-cccceeecccccccCChhhee
Confidence            7899999999999999999999999999999999999999999999999999997752 2257999999999      99


Q ss_pred             eeeecCCCCCCceeE
Q psy6711          76 GSINKVEDLPEMSIV   90 (135)
Q Consensus        76 g~It~v~~~~~~~i~   90 (135)
                      .||||+||++|||+-
T Consensus       325 LFIsNtgg~~PSyvy  339 (353)
T KOG1465|consen  325 LFISNTGGVAPSYVY  339 (353)
T ss_pred             EEEecCCCCChHHHH
Confidence            999999999999983

>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]

Probab=99.81  E-value=1.3e-20  Score=158.84  Aligned_cols=88  Identities=16%  Similarity=0.165  Sum_probs=79.6

Q ss_pred             CCccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------c
Q psy6711           1 MGIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------H   74 (135)
Q Consensus         1 ~Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------i   74 (135)
                      .+|+||+|||+||++||++++||||||+++||.+.++.+....+|+|+++|+....+.    .+.+++||+||      |
T Consensus       202 G~lvnkiGT~~lA~~A~e~~~Pf~v~aesyKf~p~~~~~~~~~~~~~~~~e~~~~~~~----~~~~v~Np~fD~TP~~~I  277 (301)
T COG1184         202 GALVNKIGTSPLALAARELRVPFYVVAESYKFVPKTLLDTLVEIELRDPLEVAREEPL----GNLKVRNPAFDVTPPEYI  277 (301)
T ss_pred             CcEEeccchHHHHHHHHHhCCCEEEEeeeecccccccCCCcceeeccChhhccccCcc----cCccccccccCCCcHHHh
Confidence            3789999999999999999999999999999999999999999999999999844332    16899999999      9


Q ss_pred             ceeeecCCCCCCceeEee
Q psy6711          75 SGSINKVEDLPEMSIVEL   92 (135)
Q Consensus        75 sg~It~v~~~~~~~i~~~   92 (135)
                      +++|||.|..||+.+.++
T Consensus       278 d~iITe~G~~pp~~~~~i  295 (301)
T COG1184         278 DAIITELGIIPPSSIYRI  295 (301)
T ss_pred             heeeecCCCCCchhHHHH
Confidence            999999999999988443

>PRK06372 translation initiation factor IF-2B subunit delta; Provisional

Probab=99.68  E-value=4.2e-17  Score=134.64  Aligned_cols=79  Identities=14%  Similarity=0.101  Sum_probs=62.7

Q ss_pred             CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------cc
Q psy6711           2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------HS   75 (135)
Q Consensus         2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------is   75 (135)
                      |+.||+|||++|++||+|+|||||+++++||++..+.......+.++         ....+++++++||+||      |+
T Consensus       167 ~v~nkvGT~~~Al~A~~~~vPv~V~~~s~Kf~~~~~~~~~~~~~~~~---------~~~~~~~l~v~Np~FD~TPpelI~  237 (253)
T PRK06372        167 GLIHKNGTFPLALCARYLKKPFYSLTISMKIERNFLYSTYPNFKNHP---------CSEWNIDIPCINRYFDKTPPDLID  237 (253)
T ss_pred             CEeehhhHHHHHHHHHHcCCCEEEEeeccccCCCCcccccccccccc---------cccCCCCCceeCcCcCCCCHHHCC
Confidence            68999999999999999999999999999999875543211111110         1123568999999999      99


Q ss_pred             eeeecCCCCCCcee
Q psy6711          76 GSINKVEDLPEMSI   89 (135)
Q Consensus        76 g~It~v~~~~~~~i   89 (135)
                      ++|||.|.++|+.+
T Consensus       238 ~iITE~Gi~~pssV  251 (253)
T PRK06372        238 YYINENGFVKPSDV  251 (253)
T ss_pred             EEEcCCCccccccC
Confidence            99999999999876

>KOG1466|consensus

Probab=99.48  E-value=8.1e-15  Score=123.11  Aligned_cols=82  Identities=17%  Similarity=0.126  Sum_probs=70.1

Q ss_pred             CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCC-CceeeeecCccccccccCeeecCC--CceeEeeeec-----
Q psy6711           2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNG-DAIVIEERPSQEMTHVAGIHVAAS--DCGSKGTFQS-----   73 (135)
Q Consensus         2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g-~dI~IEeR~p~EVl~~~g~~iap~--~v~V~NPAFD-----   73 (135)
                      ||+|++||||+|++||+.++||||+|+++||.+.+|.+ +|+|.+.|+-+     ..+. .|+  ++...+|.-|     
T Consensus       214 GIIN~iGTyq~~v~Ak~~~kPfYV~AES~KFvRlfPLnQ~Dlp~~~~p~~-----f~~~-~~~~~~~~~e~p~vDYTpPe  287 (313)
T KOG1466|consen  214 GIINKIGTYQVAVCAKSMNKPFYVVAESHKFVRLFPLNQKDLPPALPPFK-----FSRP-VPEREDVEREHPTVDYTPPE  287 (313)
T ss_pred             ceeeecccchhhhhHHhcCCCeEEEeeccceeeeccCcccccccccCCcc-----cCCC-CCcHHhhhhcCCCcccChHH
Confidence            89999999999999999999999999999999999975 67888766544     2222 233  7889999999     


Q ss_pred             -cceeeecCCCCCCcee
Q psy6711          74 -HSGSINKVEDLPEMSI   89 (135)
Q Consensus        74 -isg~It~v~~~~~~~i   89 (135)
                       +++.+||+|-+.||-+
T Consensus       288 yiTlL~TDLGvltPSaV  304 (313)
T KOG1466|consen  288 YLTLLFTDLGVLTPSAV  304 (313)
T ss_pred             HHHHHHhhccccChhhh
Confidence             9999999999999765

>KOG1467|consensus

Probab=98.83  E-value=5.7e-10  Score=99.99  Aligned_cols=94  Identities=14%  Similarity=0.118  Sum_probs=81.3

Q ss_pred             ccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCe--ee------cCCCceeEeeeec-
Q psy6711           3 IKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGI--HV------AASDCGSKGTFQS-   73 (135)
Q Consensus         3 i~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~--~i------ap~~v~V~NPAFD-   73 (135)
                      +-+++||.++|++|++|+||++||+++|||.-....+.-..+|..+|+.+...+|+  +.      .-.+++.+|=.+| 
T Consensus       444 vysR~GTa~valvAna~nVPVlVCCE~yKF~eRvQlDsi~~NEL~dpn~l~~v~g~~~~~~L~~wqn~~~L~~lnl~YD~  523 (556)
T KOG1467|consen  444 VYSRVGTACVALVANAFNVPVLVCCEAYKFHERVQLDSIVSNELGDPNALQEVRGREDKVALAGWQNNANLKFLNLMYDV  523 (556)
T ss_pred             hhhhcchHHHHHHhcccCCCEEEEechhhhhhhhhhhhhhhcccCChhhhhhccCcchhhhhhccccccccchhheeecc
Confidence            45789999999999999999999999999999999887789999999988888883  11      2235788999999 


Q ss_pred             -----cceeeecCCCCCCceeEeeccee
Q psy6711          74 -----HSGSINKVEDLPEMSIVELEDVK   96 (135)
Q Consensus        74 -----isg~It~v~~~~~~~i~~~~~~~   96 (135)
                           ||.+|||.|-+||+++-.+++.|
T Consensus       524 TPpelIs~vVTe~g~lp~TSVPvilr~~  551 (556)
T KOG1467|consen  524 TPPELISAVVTELGMLPPTSVPVILREK  551 (556)
T ss_pred             CcHHHHHHHHhhccccCCccchHHHhhh
Confidence                 99999999999999987666665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	135
1t9k_A	347	X-ray Crystal Structure Of Aif-2b Alpha Subunit-rel		2e-07
1t5o_A	351	Crystal Structure Of The Translation Initiation Fac		2e-05
2yrf_A	374	Crystal Structure Of 5-Methylthioribose 1-Phosphate		4e-05
2a0u_A	383	Crystal Structure Of The Eukaryotic Initiation Fact		5e-05
1w2w_B	191	Crystal Structure Of Yeast Ypr118w, A Methylthiorib		6e-05

>pdb|1T9K|A Chain A, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related Translation Initiation Factor [thermotoga Maritima] Length = 347

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 35/50 (70%)
Query: 12  IAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVA 61
           +AV AK + +PF++AAP ++ID  I +G+ I IEER  +E+TH  G  +A
Sbjct: 253 LAVLAKRNNIPFYVAAPVSTIDPTIRSGEEIPIEERRPEEVTHCGGNRIA 302

>pdb|1T5O|A Chain A, Crystal Structure Of The Translation Initiation Factor Eif-2b, Subunit Delta, From A. Fulgidus Length = 351

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 12  IAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVA 61
           ++V AKHH +PF++AAP  + D +    D +VIEERP +E+       +A
Sbjct: 250 VSVVAKHHNIPFYVAAPKATFDWERTAKD-VVIEERPREELIFCGKRQIA 298

>pdb|2YRF|A Chain A, Crystal Structure Of 5-Methylthioribose 1-Phosphate Isomerase From Bacillus Subtilis Complexed With Sulfate Ion Length = 374

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 12  IAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASD 64
           +A+ A    +PFF+AAP ++ D  +  G  I IEER  +E+  ++G+  A S+
Sbjct: 278 LAILANAFDIPFFVAAPLSTFDTKVKCGADIPIEERDPEEVRQISGVRTAPSN 330

>pdb|2A0U|A Chain A, Crystal Structure Of The Eukaryotic Initiation Factor 2b From Leishmania Major At 2.1 A Resolution Length = 383

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 12  IAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMT 53
           +AVSAK H V  ++AAP T++D+   +G+ + IEER   E+T
Sbjct: 282 LAVSAKFHGVKLYVAAPTTTLDVKTASGNHVEIEEREPTEIT 323

>pdb|1W2W|B Chain B, Crystal Structure Of Yeast Ypr118w, A Methylthioribose-1- Phosphate Isomerase Related To Regulatory Eif2b Subunits Length = 191

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 10  LQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAG 57
           LQ+AV  K   + FF+ AP T+ID     GD I++EER  +E   V G
Sbjct: 75  LQLAVICKQFGIKFFVVAPKTTIDNVTETGDDIIVEERNPEEFKVVTG 122

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	135
1w2w_B	191	5-methylthioribose-1-phosphate isomerase; EIF2B, m	2e-22
1t9k_A	347	Probable methylthioribose-1-phosphate isomerase; s	7e-22
2yvk_A	374	Methylthioribose-1-phosphate isomerase; methionine	8e-22
2a0u_A	383	Initiation factor 2B; SGPP, structural genomics, P	2e-21
3a11_A	338	Translation initiation factor EIF-2B, delta subun;	3e-21
1t5o_A	351	EIF2BD, translation initiation factor EIF2B, subun	2e-19
1vb5_A	276	Translation initiation factor EIF-2B; 2.20A {Pyroc	2e-14
3ecs_A	315	Translation initiation factor EIF-2B subunit alpha	2e-10

>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5 Length = 191

 Score = 86.5 bits (215), Expect = 2e-22
 Identities = 20/65 (30%), Positives = 29/65 (44%)

Query: 11  QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGT 70
           Q+AV  K   + FF+ AP T+ID     GD I++EER  +E   V G  +   +      
Sbjct: 76  QLAVICKQFGIKFFVVAPKTTIDNVTETGDDIIVEERNPEEFKVVTGTVINPENGSLILN 135

Query: 71  FQSHS 75
                
Sbjct: 136 ESGEP 140

>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5 Length = 347

 Score = 87.7 bits (218), Expect = 7e-22
 Identities = 23/55 (41%), Positives = 35/55 (63%)

Query: 11  QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDC 65
            +AV AK + +PF++AAP ++ID  I +G+ I IEER  +E+TH  G  +A    
Sbjct: 252 SLAVLAKRNNIPFYVAAPVSTIDPTIRSGEEIPIEERRPEEVTHCGGNRIAPEGV 306

>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A* Length = 374

 Score = 88.2 bits (219), Expect = 8e-22
 Identities = 19/55 (34%), Positives = 32/55 (58%)

Query: 11  QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDC 65
            +A+ A    +PFF+AAP ++ D  +  G  I IEER  +E+  ++G+  A S+ 
Sbjct: 277 GLAILANAFDIPFFVAAPLSTFDTKVKCGADIPIEERDPEEVRQISGVRTAPSNV 331

>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5 Length = 383

 Score = 86.9 bits (216), Expect = 2e-21
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 11  QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHV--AGIHVAASDCGSK 68
            +AVSAK H V  ++AAP T++D+   +G+ + IEER   E+T        V A      
Sbjct: 281 NLAVSAKFHGVKLYVAAPTTTLDVKTASGNHVEIEEREPTEITTNLVTKQRVVADGPHLS 340

>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A* Length = 338

 Score = 86.2 bits (214), Expect = 3e-21
 Identities = 14/54 (25%), Positives = 22/54 (40%)

Query: 11  QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASD 64
            IA++AK H+V   IAA       +   G  + IE R   E+     +     +
Sbjct: 234 LIALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVIPEDELKTWPKN 287

>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5 Length = 351

 Score = 81.2 bits (201), Expect = 2e-19
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 11  QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASD 64
            ++V AKHH +PF++AAP  + D +      +VIEERP +E+       +A  +
Sbjct: 249 TVSVVAKHHNIPFYVAAPKATFDWE-RTAKDVVIEERPREELIFCGKRQIAPLN 301

>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5 Length = 276

 Score = 66.5 bits (163), Expect = 2e-14
 Identities = 8/45 (17%), Positives = 22/45 (48%)

Query: 11  QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHV 55
            +A++   + +PF++AA        + +GD +++E    +    +
Sbjct: 202 LLALACHENAIPFYVAAETYKFHPTLKSGDVMLMERDLIRGNVRI 246

>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens} Length = 315

 Score = 55.8 bits (135), Expect = 2e-10
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 11  QIAVSAKHHKVPFFIAAPWTSIDLDIP-NGDAIVIEERPSQEMTHVAG 57
           Q+AV AK    PF++ A         P N   +  + +   +   VA 
Sbjct: 214 QMAVCAKAQNKPFYVVAESFKFVRLFPLNQQDVPDKFKYKADTLKVAQ 261

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	135
1w2w_B	191	5-methylthioribose-1-phosphate isomerase; EIF2B, m	99.94
1t9k_A	347	Probable methylthioribose-1-phosphate isomerase; s	99.94
3a11_A	338	Translation initiation factor EIF-2B, delta subun;	99.94
2yvk_A	374	Methylthioribose-1-phosphate isomerase; methionine	99.94
1t5o_A	351	EIF2BD, translation initiation factor EIF2B, subun	99.94
2a0u_A	383	Initiation factor 2B; SGPP, structural genomics, P	99.94
3ecs_A	315	Translation initiation factor EIF-2B subunit alpha	99.88
1vb5_A	276	Translation initiation factor EIF-2B; 2.20A {Pyroc	99.87

>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5

Probab=99.94  E-value=2.5e-28  Score=191.83  Aligned_cols=88  Identities=28%  Similarity=0.336  Sum_probs=82.2

Q ss_pred             CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCe----------------------e
Q psy6711           2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGI----------------------H   59 (135)
Q Consensus         2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~----------------------~   59 (135)
                      |+.||+|||++|++||+|+|||||+||++|||+.++.|++|+||+|+|+|++.+.|.                      +
T Consensus        67 ~v~nkiGT~~~Al~Ak~~~vPf~V~a~~~k~~~~~~~g~~i~iE~r~~~ev~~~~~~~~~p~~g~~~~~~~~~~~~~~~~  146 (191)
T 1w2w_B           67 DTANKIGTLQLAVICKQFGIKFFVVAPKTTIDNVTETGDDIIVEERNPEEFKVVTGTVINPENGSLILNESGEPITGKVG  146 (191)
T ss_dssp             CEEEETTHHHHHHHHHHHTCEEEEECCGGGBCSSCCSGGGCCCCBCCTHHHHEEEEEEBCTTTCCBCBCTTSCBCEEEEE
T ss_pred             CEEecccHHHHHHHHHHcCCCEEEecccceeeeccCCcceeecccCCHHHhccccCcccccccccccccccccccccccc
Confidence            588999999999999999999999999999999999999999999999999998664                      4


Q ss_pred             ecCCCceeEeeeec------cceeeecCCCCCCcee
Q psy6711          60 VAASDCGSKGTFQS------HSGSINKVEDLPEMSI   89 (135)
Q Consensus        60 iap~~v~V~NPAFD------isg~It~v~~~~~~~i   89 (135)
                      +++++++++||+||      |+++|||.|-++||.+
T Consensus       147 ~~~~~~~v~Np~fDvTP~~lIt~iITE~Gv~~ps~~  182 (191)
T 1w2w_B          147 IAPLEINVWNPAFDITPHELIDGIITEEGVFTKNSS  182 (191)
T ss_dssp             CSCTTCEECCBSEEEECGGGCSEEEETTEEECCCTT
T ss_pred             ccCCCccccccccccCCHHHcCEEEecCcccCCCCc
Confidence            67889999999999      9999999999988765

>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5

Probab=99.94  E-value=3.9e-28  Score=205.24  Aligned_cols=89  Identities=27%  Similarity=0.337  Sum_probs=85.5

Q ss_pred             CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------cc
Q psy6711           2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------HS   75 (135)
Q Consensus         2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------is   75 (135)
                      |+.||+|||++|++||+|+|||||+||++|||+.+++|++|+||+|+|+|++.+.|.+++|++++++||+||      |+
T Consensus       243 ~v~NKiGT~~lAl~Ak~~~vPfyV~ap~~k~d~~~~~g~~i~iE~r~~~ev~~~~g~~~~~~~v~v~NPaFDvTP~~lIt  322 (347)
T 1t9k_A          243 DTANKIGTYSLAVLAKRNNIPFYVAAPVSTIDPTIRSGEEIPIEERRPEEVTHCGGNRIAPEGVKVLNPAFDVTENTLIT  322 (347)
T ss_dssp             CEEEETTHHHHHHHHHHTTCCEEEECCGGGEETTCSSGGGSCCCBCCTHHHHEETTEECSCTTCEECCBSEEEECGGGCS
T ss_pred             CEEecccHHHHHHHHHHcCCCEEEecccceeccccCCccccccccCChHhccccCCeeccCCCccccCcccccCCHHHCC
Confidence            588999999999999999999999999999999999999999999999999999999999999999999999      99


Q ss_pred             eeeecCCCCCCceeE
Q psy6711          76 GSINKVEDLPEMSIV   90 (135)
Q Consensus        76 g~It~v~~~~~~~i~   90 (135)
                      ++|||.|-++|++..
T Consensus       323 ~iITE~Gv~~p~~~~  337 (347)
T 1t9k_A          323 AIITEKGVIRPPFEE  337 (347)
T ss_dssp             EEEETTEEECSSHHH
T ss_pred             EEeccCCccCcchHH
Confidence            999999999998753

>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*

Probab=99.94  E-value=3.5e-28  Score=204.44  Aligned_cols=88  Identities=18%  Similarity=0.088  Sum_probs=83.8

Q ss_pred             CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeec-CCCceeEeeeec------c
Q psy6711           2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVA-ASDCGSKGTFQS------H   74 (135)
Q Consensus         2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~ia-p~~v~V~NPAFD------i   74 (135)
                      |+.||+|||++|++||+|+|||||+||++|||+.+++|++|+||+|+|+||+.+ |.+++ |++++++||+||      |
T Consensus       225 ~v~NKiGT~~lAl~Ak~~~vPfyV~a~~~k~d~~~~~g~~i~iE~r~~~ev~~~-g~~~~w~~~v~v~NPaFDvTP~~lI  303 (338)
T 3a11_A          225 AVINKIGTALIALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVIPE-DELKTWPKNIEVWNPAFDVTPPEYV  303 (338)
T ss_dssp             CEEEETTHHHHHHHHHHTTCEEEEECCGGGBCSCCSSSSCCCCCBCCGGGTSCH-HHHTTSCTTEEECCBSEEEECGGGC
T ss_pred             CEeecccHHHHHHHHHHcCCCEEEecccceecccCCCCcccccccCCHHHcccc-cccccCCCCceecCcceeccCHHHc
Confidence            588999999999999999999999999999999999999999999999999998 77777 899999999999      9


Q ss_pred             ceeeecCCCCCCceeE
Q psy6711          75 SGSINKVEDLPEMSIV   90 (135)
Q Consensus        75 sg~It~v~~~~~~~i~   90 (135)
                      +++|||.|.++|+++.
T Consensus       304 t~iITE~Gv~~p~~v~  319 (338)
T 3a11_A          304 DVIITERGIIPPYAAI  319 (338)
T ss_dssp             SEEEETTEEECGGGHH
T ss_pred             CEEecCCCccCchhHH
Confidence            9999999999999873

>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*

Probab=99.94  E-value=5.8e-28  Score=206.11  Aligned_cols=88  Identities=25%  Similarity=0.341  Sum_probs=85.1

Q ss_pred             CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------cc
Q psy6711           2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------HS   75 (135)
Q Consensus         2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------is   75 (135)
                      ++.||+|||++|++||+|+||||||||++|||+.+++|++|+||+|+|+|++.+.|.+++|++++++||+||      |+
T Consensus       268 ~v~NKiGTy~lAl~Ak~~~vPfyV~ap~~k~d~~~~~g~~i~iEer~~~Ev~~~~g~~~~~~~v~v~NPaFDvTP~~lIt  347 (374)
T 2yvk_A          268 DTANKIGTYGLAILANAFDIPFFVAAPLSTFDTKVKCGADIPIEERDPEEVRQISGVRTAPSNVPVFNPAFDITPHDLIS  347 (374)
T ss_dssp             CEEEETTHHHHHHHHHHTTCCEEEECCGGGEETTCSSGGGSCCCBCCTHHHHEETTEECSCTTCCBCCBSEEEECGGGCS
T ss_pred             CEEecccHHHHHHHHHHcCCCEEEecccceeCccCCCccccccccCCHHHhcccCCceecCCCcceeCcceeccCHHHCC
Confidence            588999999999999999999999999999999999999999999999999999999999999999999999      99


Q ss_pred             eeeecCCCCCCcee
Q psy6711          76 GSINKVEDLPEMSI   89 (135)
Q Consensus        76 g~It~v~~~~~~~i   89 (135)
                      ++|||.|-++|++.
T Consensus       348 ~iITE~Gv~~P~~~  361 (374)
T 2yvk_A          348 GIITEKGIMTGNYE  361 (374)
T ss_dssp             EEEETTEEECSCHH
T ss_pred             EEeccCCccCcchH
Confidence            99999999999875

>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5

Probab=99.94  E-value=6.7e-28  Score=204.03  Aligned_cols=90  Identities=23%  Similarity=0.342  Sum_probs=84.8

Q ss_pred             CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------cc
Q psy6711           2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------HS   75 (135)
Q Consensus         2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------is   75 (135)
                      |+.||+|||++|++||+|+|||||+||++|||+. ++|++|+||+|+|+|++.+.|.+++|++++++||+||      |+
T Consensus       240 Gv~NKiGT~~lAl~Ak~~~vPfyV~a~~~k~d~~-~~g~~i~iEer~~~ev~~~~g~~~~~~~v~v~NPaFDvTP~~lIt  318 (351)
T 1t5o_A          240 AVFNKIGTYTVSVVAKHHNIPFYVAAPKATFDWE-RTAKDVVIEERPREELIFCGKRQIAPLNVKVYNPAFDPTPLENVT  318 (351)
T ss_dssp             EEEEETTHHHHHHHHHHTTCCEEEECCGGGBCTT-CCGGGCCCCBCCTHHHHEETTEECSCTTCEECCBSEEEEEGGGCS
T ss_pred             CcccccCHHHHHHHHHHcCCCEEEeCccceeccc-cCCCccccccCCHHHhcccCCeeecCCCcceeCccccCCCHHHCC
Confidence            4679999999999999999999999999999999 9999999999999999999999999999999999999      99


Q ss_pred             eeeecCCCCCCceeEee
Q psy6711          76 GSINKVEDLPEMSIVEL   92 (135)
Q Consensus        76 g~It~v~~~~~~~i~~~   92 (135)
                      ++|||.|.++|++..++
T Consensus       319 ~iITE~Gv~~p~~~~~l  335 (351)
T 1t5o_A          319 ALITEYGVIYPPYEVNV  335 (351)
T ss_dssp             EEEETTEEECSCHHHHH
T ss_pred             EEEeCCCccCcchHHHH
Confidence            99999999999975333

>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5

Probab=99.94  E-value=7.7e-28  Score=205.87  Aligned_cols=94  Identities=26%  Similarity=0.294  Sum_probs=86.6

Q ss_pred             CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccc--cCeeecCCC--ceeEeeeec----
Q psy6711           2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHV--AGIHVAASD--CGSKGTFQS----   73 (135)
Q Consensus         2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~--~g~~iap~~--v~V~NPAFD----   73 (135)
                      ++.||+|||++|++||+|+||||||||++|||+.+++|++|+||+|+|+||+.+  .|.+++|++  ++++||+||    
T Consensus       272 ~v~NKiGTy~lAl~Ak~~~vPfyV~ap~~k~d~~~~~g~~i~iEer~~~Ev~~~~~~g~~~a~~~~~v~v~NPaFDvTP~  351 (383)
T 2a0u_A          272 DTANKIGTYNLAVSAKFHGVKLYVAAPTTTLDVKTASGNHVEIEEREPTEITTNLVTKQRVVADGPHLSIWNPVFDITPS  351 (383)
T ss_dssp             CEEEETTHHHHHHHHHHTTCCEEEECCGGGBCTTCCSGGGSCCCBCCTHHHHBCTTTCCBCSCCCTTEEECCBSEEEECG
T ss_pred             CEeecccHHHHHHHHHHcCCCEEEeCCcceecCcCCCccccccccCCHHHhcccccCCceecCCCCceeeecccccccCh
Confidence            588999999999999999999999999999999999999999999999999998  788888999  999999999    


Q ss_pred             --cc-eeeecCCCCCCceeEeecce
Q psy6711          74 --HS-GSINKVEDLPEMSIVELEDV   95 (135)
Q Consensus        74 --is-g~It~v~~~~~~~i~~~~~~   95 (135)
                        |+ ++|||.|-++|+...+..++
T Consensus       352 ~lIt~~iITE~Gv~~p~~~~~~~~~  376 (383)
T 2a0u_A          352 ELITGGIITEKGVQAPAASAPYYDI  376 (383)
T ss_dssp             GGCCSEEECSSCEECCCSSSSCCCH
T ss_pred             HHCCcEEEccCCccCCccchhhcCH
Confidence              99 99999999988766544443

>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}

Probab=99.88  E-value=8.9e-24  Score=176.88  Aligned_cols=85  Identities=18%  Similarity=0.141  Sum_probs=68.6

Q ss_pred             CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCC-CCceeeeecCccccccccCeeecCCCceeEeeeec------c
Q psy6711           2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPN-GDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------H   74 (135)
Q Consensus         2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~-g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------i   74 (135)
                      |+.||+|||++|++||+|+|||||+||++||++.++. ++++++|+|++.|++.+.+   .|++++++||+||      |
T Consensus       205 ~v~nkiGT~~iAl~Ak~~~vP~~V~a~~~K~~~~~~~~~~~i~~e~~~~~ev~~~~~---~~~~v~v~NP~fDvTP~~lI  281 (315)
T 3ecs_A          205 GIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFPLNQQDVPDKFKYKADTLKVAQ---TGQDLKEEHPWVDYTAPSLI  281 (315)
T ss_dssp             CEEEETTHHHHHHHHHHTTCCEEEECCGGGBCSCCCSSGGGSCGGGTC----------------CCBCCCSEEEECGGGC
T ss_pred             CeeehhhhHHHHHHHHHhCCCEEEEeccccccccCCCCcccCCccccChhhcccccc---CCCcCcCCCCCccCCCHHHc
Confidence            6899999999999999999999999999999999874 5788999999999987754   5689999999999      9


Q ss_pred             ceeeecCCCCCCcee
Q psy6711          75 SGSINKVEDLPEMSI   89 (135)
Q Consensus        75 sg~It~v~~~~~~~i   89 (135)
                      +++|||.|.++|+++
T Consensus       282 t~iITe~Gv~~p~~v  296 (315)
T 3ecs_A          282 TLLFTDLGVLTPSAV  296 (315)
T ss_dssp             SEEEETTEEECGGGH
T ss_pred             CEEEcCCCCCCcchh
Confidence            999999999999987

>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5

Probab=99.87  E-value=3.9e-23  Score=168.78  Aligned_cols=76  Identities=12%  Similarity=0.143  Sum_probs=72.6

Q ss_pred             CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------cc
Q psy6711           2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------HS   75 (135)
Q Consensus         2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------is   75 (135)
                      |+.||+|||++|++||+|++||||+||++||++. .++++++||+|+++|           +++++|||+||      |+
T Consensus       193 ~v~nkiGt~~iA~~A~~~~vp~~V~a~~~K~~~~-~~~~~i~iE~r~~~e-----------~~v~v~np~fD~tP~~lI~  260 (276)
T 1vb5_A          193 YVVNKAGTYLLALACHENAIPFYVAAETYKFHPT-LKSGDVMLMERDLIR-----------GNVRIRNVLFDVTPWKYVR  260 (276)
T ss_dssp             CEEEETTHHHHHHHHHHTTCCEEEECCGGGBCSS-CCGGGCCCCBCCCEE-----------TTEECCCBCEEEECGGGCS
T ss_pred             CEeechhHHHHHHHHHHcCCCEEEeccccccCcc-cCccccccccCCccc-----------cCccccCCCeEecCHHHCC
Confidence            6889999999999999999999999999999999 999999999999998           67899999999      99


Q ss_pred             eeeecCCCCCCcee
Q psy6711          76 GSINKVEDLPEMSI   89 (135)
Q Consensus        76 g~It~v~~~~~~~i   89 (135)
                      ++|||.|.++|+++
T Consensus       261 ~iITe~Gv~~p~~v  274 (276)
T 1vb5_A          261 GIITELGIVIPPRD  274 (276)
T ss_dssp             EEEETTEEECTTTT
T ss_pred             EEEeCCCccCcccc
Confidence            99999998999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	135
g1w2w.1	402	c.124.1.5 (A:,B:) Putative methylthioribose-1-phos	4e-12
d2a0ua1	374	c.124.1.5 (A:10-383) Initiation factor 2b {Leishma	9e-11
d1t9ka_	340	c.124.1.5 (A:) Probable methylthioribose-1-phospha	3e-09
d1t5oa_	340	c.124.1.5 (A:) Putative eIF-2B delta-subunit {Arch	2e-08

>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major [TaxId: 5664]} Length = 374

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: IF2B-like
domain: Initiation factor 2b
species: Leishmania major [TaxId: 5664]

 Score = 55.9 bits (134), Expect = 9e-11
 Identities = 19/47 (40%), Positives = 29/47 (61%)

Query: 11  QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAG 57
            +AVSAK H V  ++AAP T++D+   +G+ + IEER   E+T    
Sbjct: 272 NLAVSAKFHGVKLYVAAPTTTLDVKTASGNHVEIEEREPTEITTNLV 318

>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate isomerase TM0911 {Thermotoga maritima [TaxId: 2336]} Length = 340

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: IF2B-like
domain: Probable methylthioribose-1-phosphate isomerase TM0911
species: Thermotoga maritima [TaxId: 2336]

 Score = 51.3 bits (122), Expect = 3e-09
 Identities = 23/59 (38%), Positives = 35/59 (59%)

Query: 6   IKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASD 64
                 +AV AK + +PF++AAP ++ID  I +G+ I IEER  +E+TH  G  +A   
Sbjct: 243 KIGTYSLAVLAKRNNIPFYVAAPVSTIDPTIRSGEEIPIEERRPEEVTHCGGNRIAPEG 301

>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 340

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: IF2B-like
domain: Putative eIF-2B delta-subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 49.4 bits (117), Expect = 2e-08
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 11  QIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASD 64
            ++V AKHH +PF++AAP  + D +      +VIEERP +E+       +A  +
Sbjct: 248 TVSVVAKHHNIPFYVAAPKATFDWE-RTAKDVVIEERPREELIFCGKRQIAPLN 300

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	135
d1t9ka_	340	Probable methylthioribose-1-phosphate isomerase TM	99.93
g1w2w.1	402	Putative methylthioribose-1-phosphate isomerase Yp	99.91
d1t5oa_	340	Putative eIF-2B delta-subunit {Archaeon Archaeoglo	99.91
d2a0ua1	374	Initiation factor 2b {Leishmania major [TaxId: 566	99.9
d1vb5a_	274	Putative eIF-2B subunit 2-like protein PH0440 {Pyr	99.8

>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate isomerase TM0911 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: IF2B-like
domain: Probable methylthioribose-1-phosphate isomerase TM0911
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=1.2e-27  Score=199.13  Aligned_cols=88  Identities=27%  Similarity=0.348  Sum_probs=85.6

Q ss_pred             CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------cc
Q psy6711           2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------HS   75 (135)
Q Consensus         2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------is   75 (135)
                      |+.||+|||++|++||+|+|||||+||++|||+.++.|++++||+|+++|++.+.|..+++++++++||+||      |+
T Consensus       239 ~v~nkiGT~~~A~~A~~~~vP~~V~a~~~k~~~~~~~~~~~~ie~r~~~ev~~~~~~~~~~~~~~v~np~fD~tP~~lIt  318 (340)
T d1t9ka_         239 DTANKIGTYSLAVLAKRNNIPFYVAAPVSTIDPTIRSGEEIPIEERRPEEVTHCGGNRIAPEGVKVLNPAFDVTENTLIT  318 (340)
T ss_dssp             CEEEETTHHHHHHHHHHTTCCEEEECCGGGEETTCSSGGGSCCCBCCTHHHHEETTEECSCTTCEECCBSEEEECGGGCS
T ss_pred             CEEEcccHHHHHHHHHhcCCcEEEEeeccCcCCCCCCcCcccccccCHHHccccCCcEeCCCCCCeeCcCccCCCHHHCC
Confidence            589999999999999999999999999999999999999999999999999999999999999999999999      99


Q ss_pred             eeeecCCCCCCcee
Q psy6711          76 GSINKVEDLPEMSI   89 (135)
Q Consensus        76 g~It~v~~~~~~~i   89 (135)
                      ++|||.|-++|||.
T Consensus       319 ~iiTe~G~~~Ps~~  332 (340)
T d1t9ka_         319 AIITEKGVIRPPFE  332 (340)
T ss_dssp             EEEETTEEECSSHH
T ss_pred             EEECCCcccCCCCH
Confidence            99999999999975

>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: IF2B-like
domain: Putative eIF-2B delta-subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.91  E-value=1e-25  Score=187.05  Aligned_cols=86  Identities=23%  Similarity=0.339  Sum_probs=81.6

Q ss_pred             CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------cc
Q psy6711           2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------HS   75 (135)
Q Consensus         2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------is   75 (135)
                      |+.||+|||++|++||+|+|||||+||++|||+.. .+++++||+|+++|+..+.+..++|++++++||+||      |+
T Consensus       239 G~~nkiGT~~~A~~Ak~~~vP~~V~~~~~k~~~~~-~~~~i~ie~~~~~e~~~~~~~~~~~~~~~v~np~fD~tP~~lI~  317 (340)
T d1t5oa_         239 AVFNKIGTYTVSVVAKHHNIPFYVAAPKATFDWER-TAKDVVIEERPREELIFCGKRQIAPLNVKVYNPAFDPTPLENVT  317 (340)
T ss_dssp             EEEEETTHHHHHHHHHHTTCCEEEECCGGGBCTTC-CGGGCCCCBCCTHHHHEETTEECSCTTCEECCBSEEEEEGGGCS
T ss_pred             cccccccHHHHHHHHHHhCCcEEEEeccccccccC-CccccccccCCHHHhcccCCeeecCCCCCeeCcCccCCCHHHCC
Confidence            67899999999999999999999999999999874 678899999999999999999999999999999999      99


Q ss_pred             eeeecCCCCCCce
Q psy6711          76 GSINKVEDLPEMS   88 (135)
Q Consensus        76 g~It~v~~~~~~~   88 (135)
                      ++|||.|.++||+
T Consensus       318 ~iiTe~Gi~~P~~  330 (340)
T d1t5oa_         318 ALITEYGVIYPPY  330 (340)
T ss_dssp             EEEETTEEECSCH
T ss_pred             EEECCCCccCCCc
Confidence            9999999998886

>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: IF2B-like
domain: Initiation factor 2b
species: Leishmania major [TaxId: 5664]

Probab=99.90  E-value=2.4e-25  Score=186.58  Aligned_cols=93  Identities=25%  Similarity=0.269  Sum_probs=81.5

Q ss_pred             CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCe--ee--cCCCceeEeeeec----
Q psy6711           2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGI--HV--AASDCGSKGTFQS----   73 (135)
Q Consensus         2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~--~i--ap~~v~V~NPAFD----   73 (135)
                      ++.||+|||++|++||+|+|||||+||++|||+.+++|++|+||+|+|+|++...+.  ++  .+++++++||+||    
T Consensus       263 ~v~nkiGT~~~A~~A~~~~vP~~v~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~~~~~~~~~~~~v~np~fD~tP~  342 (374)
T d2a0ua1         263 DTANKIGTYNLAVSAKFHGVKLYVAAPTTTLDVKTASGNHVEIEEREPTEITTNLVTKQRVVADGPHLSIWNPVFDITPS  342 (374)
T ss_dssp             CEEEETTHHHHHHHHHHTTCCEEEECCGGGBCTTCCSGGGSCCCBCCTHHHHBCTTTCCBCSCCCTTEEECCBSEEEECG
T ss_pred             CEEeccchHHHHHHHHHcCCCEEEEecccccCcCCCCCCcccccCCChHHccccccccceeccCCCCcceeCcCccCCCh
Confidence            588999999999999999999999999999999999999999999999999875432  22  3467999999999    


Q ss_pred             --cc-eeeecCCCCCCceeEeecc
Q psy6711          74 --HS-GSINKVEDLPEMSIVELED   94 (135)
Q Consensus        74 --is-g~It~v~~~~~~~i~~~~~   94 (135)
                        || ++|||.|.++|+...-..+
T Consensus       343 ~lIt~~iiTe~G~~~P~~~~~~~~  366 (374)
T d2a0ua1         343 ELITGGIITEKGVQAPAASAPYYD  366 (374)
T ss_dssp             GGCCSEEECSSCEECCCSSSSCCC
T ss_pred             HHcCCEEECCCCcccccccCCccc
Confidence              99 9999999999988744333

>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein PH0440 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: IF2B-like
domain: Putative eIF-2B subunit 2-like protein PH0440
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.80  E-value=5e-21  Score=155.07  Aligned_cols=75  Identities=13%  Similarity=0.209  Sum_probs=66.3

Q ss_pred             CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------cc
Q psy6711           2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------HS   75 (135)
Q Consensus         2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------is   75 (135)
                      ++.||+|||++|++||+|+|||||+||++|||+.+..+ ++++|||+.           .+++++++||+||      ||
T Consensus       192 ~v~nkiGT~~~A~~Ak~~~vP~~V~a~~~k~~~~~~~~-~~~~~e~~~-----------~~~~~~v~np~fD~tP~~lI~  259 (274)
T d1vb5a_         192 YVVNKAGTYLLALACHENAIPFYVAAETYKFHPTLKSG-DVMLMERDL-----------IRGNVRIRNVLFDVTPWKYVR  259 (274)
T ss_dssp             CEEEETTHHHHHHHHHHTTCCEEEECCGGGBCSSCCGG-GCCCCBCCC-----------EETTEECCCBCEEEECGGGCS
T ss_pred             CEEeccchhHHHHHHHHcCCCceEeccccccCCCCCCC-CcceeecCC-----------CCCCceeeCcCccCCCHHHCC
Confidence            58999999999999999999999999999999999888 567777653           3478999999999      99


Q ss_pred             eeeecCCCCCCce
Q psy6711          76 GSINKVEDLPEMS   88 (135)
Q Consensus        76 g~It~v~~~~~~~   88 (135)
                      ++|||.|-++|++
T Consensus       260 ~iiTE~Gv~~P~~  272 (274)
T d1vb5a_         260 GIITELGIVIPPR  272 (274)
T ss_dssp             EEEETTEEECTTT
T ss_pred             EEECCCcccCCCC
Confidence            9999988886654