Psyllid ID: psy675
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1175 | 2.2.26 [Sep-21-2011] | |||||||
| Q86XK2 | 927 | F-box only protein 11 OS= | yes | N/A | 0.476 | 0.604 | 0.584 | 0.0 | |
| Q7TSL3 | 843 | F-box only protein 11 OS= | yes | N/A | 0.476 | 0.664 | 0.584 | 0.0 | |
| Q7TPD1 | 843 | F-box only protein 11 OS= | yes | N/A | 0.476 | 0.664 | 0.583 | 0.0 | |
| Q7TQF2 | 950 | F-box only protein 10 OS= | no | N/A | 0.376 | 0.465 | 0.298 | 3e-45 | |
| Q9UK96 | 956 | F-box only protein 10 OS= | no | N/A | 0.378 | 0.465 | 0.293 | 4e-43 |
| >sp|Q86XK2|FBX11_HUMAN F-box only protein 11 OS=Homo sapiens GN=FBXO11 PE=1 SV=3 | Back alignment and function desciption |
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Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/638 (58%), Positives = 460/638 (72%), Gaps = 78/638 (12%)
Query: 4 KYLYSRVFEYDMPLYNPGGSLCFEFVPPEDSDHANPWKESFRQLYRGIHVRPGY-KAVTS 62
K LY VFEY P+ +P ++ + PE+ +H NPWKESF+QLY+G HV+PG+ + S
Sbjct: 197 KRLYMEVFEYTRPMMHPEPGKFYQ-INPEEYEHPNPWKESFQQLYKGAHVKPGFAEHFYS 255
Query: 63 DPGR-----KLAHFDTIQAALDHGDELGQSAPLVFVHSGVYRGEFLVLDSDVIIIGAAPG 117
+P R + ++DTI+ AL G + L+FVHSG+Y E++ ++S + +IGAAPG
Sbjct: 256 NPARYKGRENMLYYDTIEDALG-GVQEAHFDGLIFVHSGIYTDEWIYIESPITMIGAAPG 314
Query: 118 NVAESVILERDTESTVMFVEGAKNAYLGHVTLKFSPEAPSTVQHHKHYCLEVGEHATPTI 177
VA+ VI+E +ST +F+EG+++AY+G++T++F+P+ S H+ H+CLE+ + +P I
Sbjct: 315 KVADKVIIENTRDSTFVFMEGSEDAYVGYMTIRFNPDDKSAQHHNAHHCLEITVNCSPII 374
Query: 178 DHCIIRSTSVVGAAVCVSGVCASPTLRHCDISDCENVGLYVTDYAQGLYEDNEISRNALA 237
DHCIIRST VG+AVCVSG A PT++HC+ISDCENVGLY+TD+AQG+YEDNEIS NALA
Sbjct: 375 DHCIIRSTCTVGSAVCVSGQGACPTIKHCNISDCENVGLYITDHAQGIYEDNEISNNALA 434
Query: 238 GIWVKNYANPIMRRNHIHH----------------------------------------- 256
GIWVKN+ NPI+RRNHIHH
Sbjct: 435 GIWVKNHGNPIIRRNHIHHGRDVGVFTFDHGMGYFESCNIHRNRIAGFEVKAYANPTVVR 494
Query: 257 -----GRDVGIFTFDNGH---------------IFPISNSNPTIRRNEIYNGHQGGVYIF 296
G+ GI+ + G ++ SNS+PTIR N I+NG+QGGVYIF
Sbjct: 495 CEIHHGQTGGIYVHEKGRGQFIENKIYANNFAGVWITSNSDPTIRGNSIFNGNQGGVYIF 554
Query: 297 GEGRGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYA 356
G+GRGLIE N+IYGNALAGIQIRT+S PIVRHNKIH GQHGG+YVHEKG G+IEENEVY+
Sbjct: 555 GDGRGLIEGNDIYGNALAGIQIRTNSCPIVRHNKIHDGQHGGIYVHEKGQGVIEENEVYS 614
Query: 357 NTLAGVWITTGSAPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNHLYSGVQIRTGSNP 416
NTLAGVW+TTGS PVLRRNRIHSGKQVGVYFYDNGHG LEDNDI+NH+YSGVQIRTGSNP
Sbjct: 615 NTLAGVWVTTGSTPVLRRNRIHSGKQVGVYFYDNGHGVLEDNDIYNHMYSGVQIRTGSNP 674
Query: 417 IIRGNKIWGGQNGGVLVYNGGLGLLEQNEIFDNAMAGVWIKTESNPTLKRNKIFDGRDGG 476
IR NKIWGGQNGG+LVYN GLG +E NEIFDNAMAGVWIKT+SNPTL+RNKI DGRDGG
Sbjct: 675 KIRRNKIWGGQNGGILVYNSGLGCIEDNEIFDNAMAGVWIKTDSNPTLRRNKIHDGRDGG 734
Query: 477 ICIFNGGKGVLEENDIFRNAQAGVLISTQSHPMLRRNRIFDGFAAGVEITNTPLSNLLIN 536
ICIFNGG+G+LEENDIFRNAQAGVLIST SHP+LR+NRIFDGFAAG+EITN + L
Sbjct: 735 ICIFNGGRGLLEENDIFRNAQAGVLISTNSHPILRKNRIFDGFAAGIEITNHATATL--- 791
Query: 537 KENGFFEANDIHNNRIAGFEVKAGANPTVVHCEIHHGQ 574
E N I NNR G + +G N T+ +I + Q
Sbjct: 792 ------EGNQIFNNRFGGLFLASGVNVTMKDNKIMNNQ 823
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Substrate recognition component of the a (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Probably recognizes and binds to phosphorylated target proteins. Binds to and neddylates phosphorylated p53/TP53, inhibiting its transcriptional activity. SCF(FBXO11) does not seem to direct ubiquitination of TP53. Homo sapiens (taxid: 9606) |
| >sp|Q7TSL3|FBX11_RAT F-box only protein 11 OS=Rattus norvegicus GN=Fbxo11 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q7TPD1|FBX11_MOUSE F-box only protein 11 OS=Mus musculus GN=Fbxo11 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q7TQF2|FBX10_MOUSE F-box only protein 10 OS=Mus musculus GN=Fbxo10 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9UK96|FBX10_HUMAN F-box only protein 10 OS=Homo sapiens GN=FBXO10 PE=2 SV=3 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1175 | ||||||
| 270010664 | 915 | hypothetical protein TcasGA2_TC010102 [T | 0.468 | 0.601 | 0.733 | 0.0 | |
| 189239600 | 882 | PREDICTED: similar to AGAP001731-PA [Tri | 0.466 | 0.621 | 0.730 | 0.0 | |
| 242013961 | 922 | F-box only protein, putative [Pediculus | 0.476 | 0.607 | 0.705 | 0.0 | |
| 350417513 | 952 | PREDICTED: F-box only protein 11-like [B | 0.476 | 0.588 | 0.686 | 0.0 | |
| 380025995 | 951 | PREDICTED: F-box only protein 11-like [A | 0.476 | 0.588 | 0.686 | 0.0 | |
| 110756745 | 951 | PREDICTED: f-box only protein 11-like [A | 0.476 | 0.588 | 0.686 | 0.0 | |
| 340728520 | 907 | PREDICTED: f-box only protein 11-like, p | 0.468 | 0.607 | 0.693 | 0.0 | |
| 383854251 | 952 | PREDICTED: F-box only protein 11-like [M | 0.468 | 0.578 | 0.691 | 0.0 | |
| 307203906 | 910 | F-box only protein 11 [Harpegnathos salt | 0.476 | 0.615 | 0.679 | 0.0 | |
| 332026696 | 952 | F-box only protein 11 [Acromyrmex echina | 0.468 | 0.578 | 0.684 | 0.0 |
| >gi|270010664|gb|EFA07112.1| hypothetical protein TcasGA2_TC010102 [Tribolium castaneum] | Back alignment and taxonomy information |
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Score = 902 bits (2332), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/624 (73%), Positives = 500/624 (80%), Gaps = 74/624 (11%)
Query: 4 KYLYSRVFEYDMPLYNPGGSLCFEFVPPEDSDHANPWKESFRQLYRGIHVRPGYKAVTSD 63
K LY V+EYD+PL+NP + F+F+ PE+SD ANPWKESFRQLYRGIHVRPGY+ +T
Sbjct: 191 KRLYQSVYEYDLPLFNPAPCV-FQFISPEESDLANPWKESFRQLYRGIHVRPGYQDLTFK 249
Query: 64 PGRKLAHFDTIQAALDHGDELGQSAPLVFVHSGVYRGEFLVLD-SDVIIIGAAPGNVAES 122
GR L +F+TIQAALD+ DE SA L+F+H+G YRGEFLV+D SD+ +IGAAPGNVAES
Sbjct: 250 -GRNLVYFNTIQAALDYADERSGSA-LIFLHAGTYRGEFLVIDDSDIALIGAAPGNVAES 307
Query: 123 VILERDTESTVMFVEGAKNAYLGHVTLKFSPEAPSTVQHHKHYCLEVGEHATPTIDHCII 182
VILER++ESTVMFVEGAKNAY GH+TLKFSP+ STV HHKHYCLEVGE+ +PTIDHCII
Sbjct: 308 VILERESESTVMFVEGAKNAYCGHLTLKFSPDVTSTVPHHKHYCLEVGENCSPTIDHCII 367
Query: 183 RSTSVVGAAVCVSGVCASPTLRHCDISDCENVGLYVTDYAQGLYEDNEISRNALAGIWVK 242
RSTSVVGAAVCVSG A+P +RHCDISDCENVGLYVTD+AQG YEDNEISRNALAGIWVK
Sbjct: 368 RSTSVVGAAVCVSGAGANPVIRHCDISDCENVGLYVTDFAQGTYEDNEISRNALAGIWVK 427
Query: 243 NYANPIMRRNHIHHGRDV------------------------------------------ 260
N ANPIMRRNHIHHGRDV
Sbjct: 428 NNANPIMRRNHIHHGRDVGIFTFDSGMGYFEANDIHNNRIAGFEVKAGANPTVVQCEIHH 487
Query: 261 ----GIFTFDNGH---------------IFPISNSNPTIRRNEIYNGHQGGVYIFGEGRG 301
GI+ +NG ++ SNSNPTIRRNEIYNGHQGGVYIFGEGRG
Sbjct: 488 GQTGGIYVHENGLGQFIDNKIHSNNFAGVWITSNSNPTIRRNEIYNGHQGGVYIFGEGRG 547
Query: 302 LIEHNNIYGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAG 361
LIEHNNIYGNALAGIQIRT+SDPIVRHNKIHHGQHGG+YVHEKG GLIEENEVYANTLAG
Sbjct: 548 LIEHNNIYGNALAGIQIRTNSDPIVRHNKIHHGQHGGIYVHEKGQGLIEENEVYANTLAG 607
Query: 362 VWITTGSAPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNHLYSGVQIRTGSNPIIRGN 421
VWITTGS+PVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNHLYSGVQIRTGSNP+IRGN
Sbjct: 608 VWITTGSSPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNHLYSGVQIRTGSNPVIRGN 667
Query: 422 KIWGGQNGGVLVYNGGLGLLEQNEIFDNAMAGVWIKTESNPTLKRNKIFDGRDGGICIFN 481
KIWGGQNGGVLVYNGGLGLLEQNEIFDNAMAGVWIKT+SNPTLKRNKIFDGRDGGICIFN
Sbjct: 668 KIWGGQNGGVLVYNGGLGLLEQNEIFDNAMAGVWIKTDSNPTLKRNKIFDGRDGGICIFN 727
Query: 482 GGKGVLEENDIFRNAQAGVLISTQSHPMLRRNRIFDGFAAGVEITNTPLSNLLINKENGF 541
GGKG+LEENDIFRNAQAGVLISTQSHP+LRRNRIFDG AAGVEITN + L
Sbjct: 728 GGKGILEENDIFRNAQAGVLISTQSHPILRRNRIFDGLAAGVEITNNATATL-------- 779
Query: 542 FEANDIHNNRIAGFEVKAGANPTV 565
E+N I NNR G + +G P V
Sbjct: 780 -ESNQIFNNRFGGLCLASGVQPIV 802
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Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|189239600|ref|XP_967912.2| PREDICTED: similar to AGAP001731-PA [Tribolium castaneum] | Back alignment and taxonomy information |
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| >gi|242013961|ref|XP_002427667.1| F-box only protein, putative [Pediculus humanus corporis] gi|212512097|gb|EEB14929.1| F-box only protein, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
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| >gi|350417513|ref|XP_003491459.1| PREDICTED: F-box only protein 11-like [Bombus impatiens] | Back alignment and taxonomy information |
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| >gi|380025995|ref|XP_003696747.1| PREDICTED: F-box only protein 11-like [Apis florea] | Back alignment and taxonomy information |
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| >gi|110756745|ref|XP_395525.3| PREDICTED: f-box only protein 11-like [Apis mellifera] | Back alignment and taxonomy information |
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| >gi|340728520|ref|XP_003402570.1| PREDICTED: f-box only protein 11-like, partial [Bombus terrestris] | Back alignment and taxonomy information |
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| >gi|383854251|ref|XP_003702635.1| PREDICTED: F-box only protein 11-like [Megachile rotundata] | Back alignment and taxonomy information |
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| >gi|307203906|gb|EFN82813.1| F-box only protein 11 [Harpegnathos saltator] | Back alignment and taxonomy information |
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| >gi|332026696|gb|EGI66805.1| F-box only protein 11 [Acromyrmex echinatior] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1175 | ||||||
| FB|FBgn0037760 | 1182 | FBX011 "FBX011 ortholog" [Dros | 0.443 | 0.440 | 0.478 | 6.4e-166 | |
| ZFIN|ZDB-GENE-061103-70 | 879 | fbxo11a "F-box protein 11a" [D | 0.514 | 0.687 | 0.432 | 1.4e-144 | |
| UNIPROTKB|F1NV53 | 879 | FBXO11 "Uncharacterized protei | 0.514 | 0.687 | 0.430 | 1.4e-144 | |
| UNIPROTKB|F1PLE4 | 872 | FBXO11 "Uncharacterized protei | 0.514 | 0.692 | 0.430 | 1.7e-144 | |
| RGD|727935 | 843 | Fbxo11 "F-box protein 11" [Rat | 0.514 | 0.716 | 0.430 | 1.7e-144 | |
| UNIPROTKB|Q7TSL3 | 843 | Fbxo11 "F-box only protein 11" | 0.514 | 0.716 | 0.430 | 1.7e-144 | |
| UNIPROTKB|Q86XK2 | 927 | FBXO11 "F-box only protein 11" | 0.514 | 0.651 | 0.430 | 2.2e-144 | |
| MGI|MGI:2147134 | 843 | Fbxo11 "F-box protein 11" [Mus | 0.514 | 0.716 | 0.429 | 1.2e-143 | |
| UNIPROTKB|I3LN00 | 928 | FBXO11 "Uncharacterized protei | 0.503 | 0.637 | 0.404 | 1.9e-129 | |
| UNIPROTKB|E1B9Q3 | 707 | FBXO11 "Uncharacterized protei | 0.406 | 0.676 | 0.453 | 1.7e-123 |
| FB|FBgn0037760 FBX011 "FBX011 ortholog" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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Score = 1364 (485.2 bits), Expect = 6.4e-166, Sum P(2) = 6.4e-166
Identities = 261/545 (47%), Positives = 357/545 (65%)
Query: 89 PLVFVHSGVYRGEFLVLDSDVIIIGAAPGNVAESVILERDTESTVMFVEGAKNAYLGHVT 148
PL+F+H+G Y+GE+L +DSDV ++GAAPGNVAESVILER+ STVMFVEGAK AY+G++T
Sbjct: 541 PLIFLHAGHYKGEYLFIDSDVALVGAAPGNVAESVILEREAGSTVMFVEGAKYAYVGYLT 600
Query: 149 LKFSPEAPSTVQHHKHYCLEVGEHATPTIDHCIIRSTXXXXXXXXXXXXXXXPTLRHCDI 208
LKFSPE STV HHKHYCL++GE+ +PT+D+CIIRST P +R+CDI
Sbjct: 601 LKFSPEVTSTVSHHKHYCLDIGENCSPTVDNCIIRSTSVVGAAVCVGGVNANPVIRNCDI 660
Query: 209 SDCENVGLYVTDYAQGLYEDNEISRNALAGIWVKNYANPIMRRNHIHHGRDVGIFTFDNG 268
SDCENVGLYVTDYAQG YE NEISRNALAGIWVKN+A+PIMR NHIHHGRDVGIFTF+NG
Sbjct: 661 SDCENVGLYVTDYAQGTYEHNEISRNALAGIWVKNFASPIMRENHIHHGRDVGIFTFENG 720
Query: 269 ---------HI-----FPI-SNSNPTIRRNEIYNGHQGGVYIFGEGRGLIEHNNIYGNAL 313
H F + + +NPT+ + EI++G GG+Y+ G G N I+ N
Sbjct: 721 MGYFEKNDIHNNRIAGFEVKAGANPTVVKCEIHHGQTGGIYVHENGLGQFIENRIHSNNF 780
Query: 314 AGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLR 373
AG+ I ++S+P +R N+I++G GGVY+ +G GLIE N +Y N LAG+ I T S P++R
Sbjct: 781 AGVWITSNSNPTIRKNEIYNGHQGGVYIFGEGRGLIEHNNIYGNALAGIQIRTNSDPIVR 840
Query: 374 RNRIHSGKQVGVYFYDNGHGKLEDNDIFNHLYSGVQIRTGSNPIIRGNKIWXXXXXXXXX 433
N+IH G+ G+Y ++ G G +E+N+++++ +GV I TGS P++R N+I
Sbjct: 841 HNKIHHGQHGGIYVHEKGQGLIEENEVYSNTLAGVWITTGSTPVLRRNRIHSGKQVGVYF 900
Query: 434 XXXXXXXXEQNEIFDNAMAGVWIKTESNPTLKRNKIFDGRDGGICIFNGGKGVLEENDIF 493
E N+IF++ +GV I+T SNP ++ NKI+ G++GG+ ++NGG G+LE+N+IF
Sbjct: 901 YDNGHGKLEDNDIFNHLYSGVQIRTGSNPVIRGNKIWGGQNGGVLVYNGGLGLLEQNEIF 960
Query: 494 RNAQAGVLISTQSHPMLRRNRIFDGFAAGVEITNTPLSNLLINKENGFFEANDIHNNRIA 553
NA AGV I T S+P L+RN+I+DG G+ + N G E NDI N A
Sbjct: 961 DNAMAGVWIKTDSNPTLKRNKIYDGRDGGI---------CIFNGGKGILEENDIFRNTQA 1011
Query: 554 GFEVKAGANPTVVHCEIHHGQTGGIYVHENGLGQFIDNRIHSNNFAGVWITSNSNPTIRR 613
G + ++P + I+ GQ G+ + N N+I N F G+ + S P R
Sbjct: 1012 GVLISTQSHPILRRNRIYDGQAAGVEITNNATATLEHNQIFKNKFGGLCLASGVQPITRG 1071
Query: 614 NEIYN 618
N I+N
Sbjct: 1072 NNIFN 1076
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| ZFIN|ZDB-GENE-061103-70 fbxo11a "F-box protein 11a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NV53 FBXO11 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PLE4 FBXO11 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| RGD|727935 Fbxo11 "F-box protein 11" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q7TSL3 Fbxo11 "F-box only protein 11" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q86XK2 FBXO11 "F-box only protein 11" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| MGI|MGI:2147134 Fbxo11 "F-box protein 11" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|I3LN00 FBXO11 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1B9Q3 FBXO11 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q86XK2 | FBX11_HUMAN | No assigned EC number | 0.5846 | 0.4765 | 0.6040 | yes | N/A |
| Q7TSL3 | FBX11_RAT | No assigned EC number | 0.5846 | 0.4765 | 0.6642 | yes | N/A |
| Q7TPD1 | FBX11_MOUSE | No assigned EC number | 0.5830 | 0.4765 | 0.6642 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1175 | |||
| pfam13229 | 157 | pfam13229, Beta_helix, Right handed beta helix reg | 1e-21 | |
| pfam13229 | 157 | pfam13229, Beta_helix, Right handed beta helix reg | 4e-21 | |
| pfam13229 | 157 | pfam13229, Beta_helix, Right handed beta helix reg | 3e-19 | |
| pfam13229 | 157 | pfam13229, Beta_helix, Right handed beta helix reg | 6e-19 | |
| pfam13229 | 157 | pfam13229, Beta_helix, Right handed beta helix reg | 1e-18 | |
| pfam13229 | 157 | pfam13229, Beta_helix, Right handed beta helix reg | 1e-18 | |
| pfam13229 | 157 | pfam13229, Beta_helix, Right handed beta helix reg | 2e-18 | |
| pfam13229 | 157 | pfam13229, Beta_helix, Right handed beta helix reg | 6e-18 | |
| pfam13229 | 157 | pfam13229, Beta_helix, Right handed beta helix reg | 6e-18 | |
| pfam13229 | 157 | pfam13229, Beta_helix, Right handed beta helix reg | 5e-17 | |
| pfam13229 | 157 | pfam13229, Beta_helix, Right handed beta helix reg | 6e-16 | |
| pfam13229 | 157 | pfam13229, Beta_helix, Right handed beta helix reg | 2e-13 | |
| pfam13229 | 157 | pfam13229, Beta_helix, Right handed beta helix reg | 2e-12 | |
| pfam13229 | 157 | pfam13229, Beta_helix, Right handed beta helix reg | 3e-11 | |
| pfam13229 | 157 | pfam13229, Beta_helix, Right handed beta helix reg | 1e-10 | |
| pfam05048 | 238 | pfam05048, NosD, Periplasmic copper-binding protei | 4e-08 | |
| pfam05048 | 238 | pfam05048, NosD, Periplasmic copper-binding protei | 5e-07 | |
| pfam05048 | 238 | pfam05048, NosD, Periplasmic copper-binding protei | 3e-06 | |
| pfam05048 | 238 | pfam05048, NosD, Periplasmic copper-binding protei | 7e-06 | |
| pfam05048 | 238 | pfam05048, NosD, Periplasmic copper-binding protei | 1e-05 | |
| pfam05048 | 238 | pfam05048, NosD, Periplasmic copper-binding protei | 5e-05 | |
| pfam05048 | 238 | pfam05048, NosD, Periplasmic copper-binding protei | 7e-05 | |
| pfam05048 | 238 | pfam05048, NosD, Periplasmic copper-binding protei | 1e-04 | |
| smart00722 | 153 | smart00722, CASH, Domain present in carbohydrate b | 1e-04 | |
| TIGR04247 | 377 | TIGR04247, NosD_copper_fam, nitrous oxide reductas | 2e-04 | |
| pfam05048 | 238 | pfam05048, NosD, Periplasmic copper-binding protei | 3e-04 | |
| pfam05048 | 238 | pfam05048, NosD, Periplasmic copper-binding protei | 3e-04 | |
| TIGR04247 | 377 | TIGR04247, NosD_copper_fam, nitrous oxide reductas | 6e-04 | |
| smart00722 | 153 | smart00722, CASH, Domain present in carbohydrate b | 7e-04 | |
| pfam05048 | 238 | pfam05048, NosD, Periplasmic copper-binding protei | 9e-04 | |
| pfam05048 | 238 | pfam05048, NosD, Periplasmic copper-binding protei | 0.001 | |
| COG3420 | 408 | COG3420, NosD, Nitrous oxidase accessory protein [ | 0.002 |
| >gnl|CDD|221993 pfam13229, Beta_helix, Right handed beta helix region | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 1e-21
Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 2/153 (1%)
Query: 710 SGVQIRTGSNPIIRGNKIWGGQNGGVLVYNGGLGLLEQNEIFDNAMAGVWIKTESNPTLK 769
SG+ I SN I N I G+ + +E N I +N G++I + SN T+
Sbjct: 1 SGILINGSSNVTIENNTISNNGGNGIYIGGSSNITIENNTITNNGGYGIYI-SGSNNTIS 59
Query: 770 RNKIFDGRDGGICIFNGGKGVLEENDIFRNAQAGVLISTQSHPMLRRNRIFDGFAAGVEI 829
N I + GGI + +E N I N G+ +S S+ + N I + G+ +
Sbjct: 60 NNTISNNGGGGIYLRGSSNNTIENNTIENNGGYGIYLSNSSNNTIENNTISNNGGYGIVL 119
Query: 830 TNNA-TATLEDNQIFNNRFGGLCLASGAKNAYL 861
+++ T+ +N I NN G+ L G+ N +
Sbjct: 120 EDSSNNVTITNNTISNNGGYGIYLIGGSSNNTI 152
|
This region contains a parallel beta helix region that shares some similarity with Pectate lyases. Length = 157 |
| >gnl|CDD|221993 pfam13229, Beta_helix, Right handed beta helix region | Back alignment and domain information |
|---|
| >gnl|CDD|221993 pfam13229, Beta_helix, Right handed beta helix region | Back alignment and domain information |
|---|
| >gnl|CDD|221993 pfam13229, Beta_helix, Right handed beta helix region | Back alignment and domain information |
|---|
| >gnl|CDD|221993 pfam13229, Beta_helix, Right handed beta helix region | Back alignment and domain information |
|---|
| >gnl|CDD|221993 pfam13229, Beta_helix, Right handed beta helix region | Back alignment and domain information |
|---|
| >gnl|CDD|221993 pfam13229, Beta_helix, Right handed beta helix region | Back alignment and domain information |
|---|
| >gnl|CDD|221993 pfam13229, Beta_helix, Right handed beta helix region | Back alignment and domain information |
|---|
| >gnl|CDD|221993 pfam13229, Beta_helix, Right handed beta helix region | Back alignment and domain information |
|---|
| >gnl|CDD|221993 pfam13229, Beta_helix, Right handed beta helix region | Back alignment and domain information |
|---|
| >gnl|CDD|221993 pfam13229, Beta_helix, Right handed beta helix region | Back alignment and domain information |
|---|
| >gnl|CDD|221993 pfam13229, Beta_helix, Right handed beta helix region | Back alignment and domain information |
|---|
| >gnl|CDD|221993 pfam13229, Beta_helix, Right handed beta helix region | Back alignment and domain information |
|---|
| >gnl|CDD|221993 pfam13229, Beta_helix, Right handed beta helix region | Back alignment and domain information |
|---|
| >gnl|CDD|221993 pfam13229, Beta_helix, Right handed beta helix region | Back alignment and domain information |
|---|
| >gnl|CDD|218400 pfam05048, NosD, Periplasmic copper-binding protein (NosD) | Back alignment and domain information |
|---|
| >gnl|CDD|218400 pfam05048, NosD, Periplasmic copper-binding protein (NosD) | Back alignment and domain information |
|---|
| >gnl|CDD|218400 pfam05048, NosD, Periplasmic copper-binding protein (NosD) | Back alignment and domain information |
|---|
| >gnl|CDD|218400 pfam05048, NosD, Periplasmic copper-binding protein (NosD) | Back alignment and domain information |
|---|
| >gnl|CDD|218400 pfam05048, NosD, Periplasmic copper-binding protein (NosD) | Back alignment and domain information |
|---|
| >gnl|CDD|218400 pfam05048, NosD, Periplasmic copper-binding protein (NosD) | Back alignment and domain information |
|---|
| >gnl|CDD|218400 pfam05048, NosD, Periplasmic copper-binding protein (NosD) | Back alignment and domain information |
|---|
| >gnl|CDD|218400 pfam05048, NosD, Periplasmic copper-binding protein (NosD) | Back alignment and domain information |
|---|
| >gnl|CDD|214788 smart00722, CASH, Domain present in carbohydrate binding proteins and sugar hydrolses | Back alignment and domain information |
|---|
| >gnl|CDD|234521 TIGR04247, NosD_copper_fam, nitrous oxide reductase family maturation protein NosD | Back alignment and domain information |
|---|
| >gnl|CDD|218400 pfam05048, NosD, Periplasmic copper-binding protein (NosD) | Back alignment and domain information |
|---|
| >gnl|CDD|218400 pfam05048, NosD, Periplasmic copper-binding protein (NosD) | Back alignment and domain information |
|---|
| >gnl|CDD|234521 TIGR04247, NosD_copper_fam, nitrous oxide reductase family maturation protein NosD | Back alignment and domain information |
|---|
| >gnl|CDD|214788 smart00722, CASH, Domain present in carbohydrate binding proteins and sugar hydrolses | Back alignment and domain information |
|---|
| >gnl|CDD|218400 pfam05048, NosD, Periplasmic copper-binding protein (NosD) | Back alignment and domain information |
|---|
| >gnl|CDD|218400 pfam05048, NosD, Periplasmic copper-binding protein (NosD) | Back alignment and domain information |
|---|
| >gnl|CDD|225954 COG3420, NosD, Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1175 | |||
| KOG1777|consensus | 625 | 100.0 | ||
| KOG1777|consensus | 625 | 100.0 | ||
| TIGR03808 | 455 | RR_plus_rpt_1 twin-arg-translocated uncharacterize | 99.93 | |
| TIGR03805 | 314 | beta_helix_1 parallel beta-helix repeat-containing | 99.83 | |
| COG3420 | 408 | NosD Nitrous oxidase accessory protein [Inorganic | 99.83 | |
| TIGR03808 | 455 | RR_plus_rpt_1 twin-arg-translocated uncharacterize | 99.62 | |
| COG3420 | 408 | NosD Nitrous oxidase accessory protein [Inorganic | 99.55 | |
| PLN02634 | 359 | probable pectinesterase | 99.5 | |
| PLN02480 | 343 | Probable pectinesterase | 99.48 | |
| PF07602 | 246 | DUF1565: Protein of unknown function (DUF1565); In | 99.47 | |
| PLN02682 | 369 | pectinesterase family protein | 99.45 | |
| PF13229 | 158 | Beta_helix: Right handed beta helix region; PDB: 2 | 99.44 | |
| PLN02773 | 317 | pectinesterase | 99.41 | |
| PF13229 | 158 | Beta_helix: Right handed beta helix region; PDB: 2 | 99.4 | |
| TIGR03805 | 314 | beta_helix_1 parallel beta-helix repeat-containing | 99.4 | |
| PLN02671 | 359 | pectinesterase | 99.37 | |
| PLN02304 | 379 | probable pectinesterase | 99.36 | |
| PF05048 | 236 | NosD: Periplasmic copper-binding protein (NosD); I | 99.35 | |
| PLN02432 | 293 | putative pectinesterase | 99.35 | |
| PLN02176 | 340 | putative pectinesterase | 99.35 | |
| PRK10531 | 422 | acyl-CoA thioesterase; Provisional | 99.34 | |
| PLN02497 | 331 | probable pectinesterase | 99.34 | |
| PLN02665 | 366 | pectinesterase family protein | 99.33 | |
| PF05048 | 236 | NosD: Periplasmic copper-binding protein (NosD); I | 99.31 | |
| PF01095 | 298 | Pectinesterase: Pectinesterase; InterPro: IPR00007 | 99.29 | |
| PF14592 | 425 | Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF | 99.28 | |
| PLN02916 | 502 | pectinesterase family protein | 99.25 | |
| PLN02933 | 530 | Probable pectinesterase/pectinesterase inhibitor | 99.25 | |
| PLN02708 | 553 | Probable pectinesterase/pectinesterase inhibitor | 99.25 | |
| PLN02745 | 596 | Putative pectinesterase/pectinesterase inhibitor | 99.24 | |
| PLN02201 | 520 | probable pectinesterase/pectinesterase inhibitor | 99.24 | |
| PLN02995 | 539 | Probable pectinesterase/pectinesterase inhibitor | 99.24 | |
| PLN02217 | 670 | probable pectinesterase/pectinesterase inhibitor | 99.24 | |
| PLN02488 | 509 | probable pectinesterase/pectinesterase inhibitor | 99.23 | |
| PLN02990 | 572 | Probable pectinesterase/pectinesterase inhibitor | 99.23 | |
| PLN02170 | 529 | probable pectinesterase/pectinesterase inhibitor | 99.22 | |
| PLN02713 | 566 | Probable pectinesterase/pectinesterase inhibitor | 99.22 | |
| PLN02506 | 537 | putative pectinesterase/pectinesterase inhibitor | 99.21 | |
| PLN02484 | 587 | probable pectinesterase/pectinesterase inhibitor | 99.2 | |
| PLN02468 | 565 | putative pectinesterase/pectinesterase inhibitor | 99.2 | |
| PLN02301 | 548 | pectinesterase/pectinesterase inhibitor | 99.19 | |
| PLN02197 | 588 | pectinesterase | 99.16 | |
| PLN02314 | 586 | pectinesterase | 99.15 | |
| PLN02416 | 541 | probable pectinesterase/pectinesterase inhibitor | 99.14 | |
| PLN03043 | 538 | Probable pectinesterase/pectinesterase inhibitor; | 99.13 | |
| PLN02313 | 587 | Pectinesterase/pectinesterase inhibitor | 99.13 | |
| PF12708 | 225 | Pectate_lyase_3: Pectate lyase superfamily protein | 98.67 | |
| COG4677 | 405 | PemB Pectin methylesterase [Carbohydrate transport | 98.56 | |
| PF01696 | 386 | Adeno_E1B_55K: Adenovirus EB1 55K protein / large | 98.47 | |
| PLN02188 | 404 | polygalacturonase/glycoside hydrolase family prote | 98.14 | |
| PLN02793 | 443 | Probable polygalacturonase | 98.12 | |
| PLN02218 | 431 | polygalacturonase ADPG | 98.11 | |
| PLN03003 | 456 | Probable polygalacturonase At3g15720 | 98.05 | |
| PLN02155 | 394 | polygalacturonase | 97.96 | |
| PLN03010 | 409 | polygalacturonase | 97.92 | |
| PF07602 | 246 | DUF1565: Protein of unknown function (DUF1565); In | 97.88 | |
| PLN02698 | 497 | Probable pectinesterase/pectinesterase inhibitor | 97.35 | |
| PF00295 | 326 | Glyco_hydro_28: Glycosyl hydrolases family 28; Int | 97.2 | |
| smart00656 | 190 | Amb_all Amb_all domain. | 97.13 | |
| COG5434 | 542 | PGU1 Endopygalactorunase [Cell envelope biogenesis | 96.8 | |
| PF00544 | 200 | Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe | 96.78 | |
| PF14592 | 425 | Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF | 96.55 | |
| TIGR03804 | 44 | para_beta_helix parallel beta-helix repeat (two co | 96.5 | |
| TIGR03804 | 44 | para_beta_helix parallel beta-helix repeat (two co | 96.5 | |
| PF01696 | 386 | Adeno_E1B_55K: Adenovirus EB1 55K protein / large | 96.45 | |
| PF12541 | 277 | DUF3737: Protein of unknown function (DUF3737) ; I | 96.0 | |
| PLN02793 | 443 | Probable polygalacturonase | 95.71 | |
| PLN02218 | 431 | polygalacturonase ADPG | 95.62 | |
| PLN03003 | 456 | Probable polygalacturonase At3g15720 | 95.56 | |
| PF12541 | 277 | DUF3737: Protein of unknown function (DUF3737) ; I | 95.5 | |
| smart00656 | 190 | Amb_all Amb_all domain. | 95.4 | |
| PF00295 | 326 | Glyco_hydro_28: Glycosyl hydrolases family 28; Int | 94.93 | |
| PLN03010 | 409 | polygalacturonase | 94.71 | |
| PLN02155 | 394 | polygalacturonase | 94.61 | |
| PLN02188 | 404 | polygalacturonase/glycoside hydrolase family prote | 94.51 | |
| PF12708 | 225 | Pectate_lyase_3: Pectate lyase superfamily protein | 94.23 | |
| PF00544 | 200 | Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe | 93.48 | |
| PLN02682 | 369 | pectinesterase family protein | 93.11 | |
| PLN02480 | 343 | Probable pectinesterase | 92.54 | |
| PF08480 | 198 | Disaggr_assoc: Disaggregatase related; InterPro: I | 92.5 | |
| PF08480 | 198 | Disaggr_assoc: Disaggregatase related; InterPro: I | 91.15 | |
| COG3866 | 345 | PelB Pectate lyase [Carbohydrate transport and met | 90.9 | |
| PRK10531 | 422 | acyl-CoA thioesterase; Provisional | 90.48 | |
| PLN02773 | 317 | pectinesterase | 90.34 | |
| PLN02634 | 359 | probable pectinesterase | 90.23 | |
| PLN02671 | 359 | pectinesterase | 89.89 | |
| COG3866 | 345 | PelB Pectate lyase [Carbohydrate transport and met | 89.66 | |
| smart00722 | 146 | CASH Domain present in carbohydrate binding protei | 89.37 | |
| PLN02665 | 366 | pectinesterase family protein | 89.2 | |
| smart00722 | 146 | CASH Domain present in carbohydrate binding protei | 88.58 | |
| PLN02432 | 293 | putative pectinesterase | 87.79 | |
| PF01095 | 298 | Pectinesterase: Pectinesterase; InterPro: IPR00007 | 86.75 | |
| COG5434 | 542 | PGU1 Endopygalactorunase [Cell envelope biogenesis | 86.72 | |
| PLN02933 | 530 | Probable pectinesterase/pectinesterase inhibitor | 84.78 | |
| PLN02916 | 502 | pectinesterase family protein | 84.63 | |
| PLN02201 | 520 | probable pectinesterase/pectinesterase inhibitor | 84.11 | |
| PLN02995 | 539 | Probable pectinesterase/pectinesterase inhibitor | 83.73 | |
| PLN02497 | 331 | probable pectinesterase | 83.51 | |
| PRK09752 | 1250 | adhesin; Provisional | 83.29 | |
| PLN02176 | 340 | putative pectinesterase | 82.26 | |
| PLN02170 | 529 | probable pectinesterase/pectinesterase inhibitor | 82.25 | |
| PRK09752 | 1250 | adhesin; Provisional | 81.94 | |
| PLN02488 | 509 | probable pectinesterase/pectinesterase inhibitor | 81.34 | |
| PLN02304 | 379 | probable pectinesterase | 80.68 |
| >KOG1777|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-72 Score=595.58 Aligned_cols=463 Identities=69% Similarity=1.129 Sum_probs=444.4
Q ss_pred CchHHHHHhhhcceeecCCCcccccCCCCCCCCcchHHHHHhcCcccCCCccEEEEeCceeeeeEEEECcceEEEecCCC
Q psy675 38 NPWKESFRQLYRGIHVRPGYKAVTSDPGRKLAHFDTIQAALDHGDELGQSAPLVFVHSGVYRGEFLVLDSDVIIIGAAPG 117 (1175)
Q Consensus 38 ~~w~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~tIq~Al~~a~~gd~~~~~I~v~~G~Y~e~~l~I~k~v~l~G~g~g 117 (1175)
|||||||+|||||+||||..+++.. ....++|++|++||..+.+.+ .+.+||||+|+|+.|.|.|+++|+|+|+.|+
T Consensus 1 NPWKEs~~Ql~rGvHV~~~~~~~~~--~~~~~~fD~iEea~~~l~e~~-~e~LIFlH~G~~e~~~i~I~sdvqiiGAs~~ 77 (625)
T KOG1777|consen 1 NPWKESFRQLYRGVHVMKNPEQFVG--AANIQCFDHIEEALRFLDEND-EEKLIFLHEGTHETETIRITSDVQIIGASPS 77 (625)
T ss_pred CchHHHHHHHhccceeccCHHHhhh--hhhhHhhhhHHHHhhhccccc-ccceEEEEeccccceEEEEcCCeeEeccCCc
Confidence 7999999999999999999998876 679999999999999998875 5789999999999889999999999999999
Q ss_pred CcceeEEEecCCCceEEEecCceeeEEeeEEEEeCCCCCccccccceeEEEECCCcceEEeeeEEEeCCCCCeEEEEEcc
Q psy675 118 NVAESVILERDTESTVMFVEGAKNAYLGHVTLKFSPEAPSTVQHHKHYCLEVGEHATPTIDHCIIRSTSVVGAAVCVSGV 197 (1175)
Q Consensus 118 ~~~~~v~i~~~~~~~v~~~~g~~~~~l~~lti~~~~~~~~~~~~~~~~~i~v~~~~~~~i~~c~i~~~~~~g~~v~v~g~ 197 (1175)
.++++|+|++..+++|+|++ +++++.+|+++.++ +.+++|.|+.+..++.+.+++|.|++....|.++++.|+
T Consensus 78 dia~sVvle~~~~t~l~F~~---~AY~Gy~Tvkf~~d----~~h~~h~~ld~~~d~~p~ie~c~i~s~~~~g~Avcv~g~ 150 (625)
T KOG1777|consen 78 DIATSVVLEGRHATTLEFQE---SAYVGYVTVKFEPD----QEHHAHVCLDIEVDASPAIEECIIRSTGGVGAAVCVPGE 150 (625)
T ss_pred cceeeEEEecccccEEEEee---cceEEEEEEEeccc----cccceeEEEeeccCCCcccccccccCCCccCcccccCCc
Confidence 99999999999999999984 79999999999986 346678999999999999999999999888999999986
Q ss_pred CccceEeeeeEecCcceeEEEeeceeEEEEeeEEEecCceeEEEeccCcceEEecEEEecccceEEEecCCCc-------
Q psy675 198 CASPTLRHCDISDCENVGLYVTDYAQGLYEDNEISRNALAGIWVKNYANPIMRRNHIHHGRDVGIFTFDNGHI------- 270 (1175)
Q Consensus 198 ~a~~~i~~c~i~~~~~~GI~v~~~s~~~ie~c~i~~~~~~gI~v~~~a~~~i~~~~I~~~~~~GI~~~~~g~g------- 270 (1175)
+.|+++.|.++|+...|+++++.+++.+|+|+|++++.++|||.+.+.+++++|++++.++.||+.++.|+|
T Consensus 151 -a~P~~~~c~isDceNvglyvTd~a~g~yEh~ei~~NalA~vwvknha~p~~R~~~ih~G~dvGiftf~hg~Gy~e~cd~ 229 (625)
T KOG1777|consen 151 -AEPEIKLCAISDCENVGLYVTDHAQGIYEHCEISRNALAGVWVKNHAFPTMRNCTIHHGRDVGIFTFEHGQGYFESCDI 229 (625)
T ss_pred -cCcceeecccccCcceeEEEEeccccceecchhccccccceeeccccChhhhhceeecCCccceEEeccCcCCCccchH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ------------------------------------------------------ccccCCcceEecceeeecccccEEEE
Q psy675 271 ------------------------------------------------------FPISNSNPTIRRNEIYNGHQGGVYIF 296 (1175)
Q Consensus 271 ------------------------------------------------------~~~~~s~~~i~~n~I~~~~~~GI~v~ 296 (1175)
|++++++|||++|+|....+.|+|++
T Consensus 230 ~qnlisg~eVkf~anp~~~rcevhh~~~ggi~vhedG~GqF~en~iyan~fAgvwits~snPTir~~eI~~G~qggvyI~ 309 (625)
T KOG1777|consen 230 HQNLISGIEVKFRANPIVLRCEVHHGKTGGIYVHEDGLGQFLENSIYANNFAGVWITSNSNPTIRQNEIIFGAQGGVYIF 309 (625)
T ss_pred HHhhhcceEEEeeccceEEEEEEeeCCCCcEEEeecchhhhhhhhhhccccceeeeeccCCCcceeeeEEecccceEEEE
Confidence 88999999999999999999999999
Q ss_pred ecCceEEEeeEEEecccccEEEecCCCceEEceEEEcCccccEEEEecceeEEeeeEEeecceeeEEEecCCCceEeeeE
Q psy675 297 GEGRGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTLAGVWITTGSAPVLRRNR 376 (1175)
Q Consensus 297 ~~~~~~i~~n~I~~n~~~GI~i~~~s~~~i~~n~i~~~~~~GI~v~~~s~~~i~~n~i~~n~~~GI~v~~~s~~~i~~n~ 376 (1175)
+.+++.++.|.+.++...||+|..+++|+++.|+|++....|||++..+++.++.|+++++..+||++..++.|.++.|+
T Consensus 310 ~~~rG~fe~n~i~~n~llgIqIr~~s~PIVr~nkI~Dg~hggi~vHr~gkGLieenkvy~n~lagi~vtTGstP~lR~n~ 389 (625)
T KOG1777|consen 310 GDGRGLFEFNEIYGNALLGIQIRTNSTPIVRYNKIHDGAHGGIYVHRKGKGLIEENKVYGNTLAGIWVTTGSTPDLRANR 389 (625)
T ss_pred eccccceehhhhhchhhhhhhhhcCCCceeeechhhccccccEEEehhcccceecchHhhhhhheeEecCCCCHhHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCceeeEEEEeCCeeEEeeceeeccceecEEEecCCccEEeccEEeCCCCCcEEEEeCceeeEEeeEEecccccCEEE
Q psy675 377 IHSGKQVGVYFYDNGHGKLEDNDIFNHLYSGVQIRTGSNPIIRGNKIWGGQNGGVLVYNGGLGLLEQNEIFDNAMAGVWI 456 (1175)
Q Consensus 377 i~~~~~~GI~v~~~~~~~i~~n~I~~n~~~GI~i~~~s~~~i~~n~i~~~~~~GI~l~~~~~~~i~~n~I~~n~~~GI~i 456 (1175)
++.+++.||++++.+...+++|+|.++.++|++++.+++|.+++|+||+.+ .||++++++.+.+|+|+|.+|++.||||
T Consensus 390 ihSGkq~GVyFydng~glle~ndi~~~~ysgvqirtGsNP~i~~NkIWggq-NGvLVyn~G~Gc~E~NeIFDNaMagVwI 468 (625)
T KOG1777|consen 390 IHSGKQVGVYFYDNGHGLLEQNDIRNHKYSGVQIRTGSNPKIRRNKIWGGQ-NGVLVYNGGLGCLEDNEIFDNAMAGVWI 468 (625)
T ss_pred ccccceeEEEEEeCCcchhhhhhhhhccccceEeecCCCCeeeecceecCc-ccEEEEcCcccccccccchhhhhcceEE
Confidence 999999999999999999999999999999999999999999999999986 6799999999999999999999999999
Q ss_pred eecCCceEeeeeEEcCCCccEEEEeCceeEEeeceeeccccccEEEeecCCceEeeeEEec
Q psy675 457 KTESNPTLKRNKIFDGRDGGICIFNGGKGVLEENDIFRNAQAGVLISTQSHPMLRRNRIFD 517 (1175)
Q Consensus 457 ~~~s~~~i~~n~i~~~~~~GI~i~~~~~~~i~~n~i~~n~~~GI~v~~~~~~~i~~n~I~~ 517 (1175)
+..++|++++|+|.+.++.||++++++++.+++|+|..|. ++ ..+.|.+++|+|.+
T Consensus 469 KTds~PtlrRNKI~dgRdgGicifngGkGlle~neif~Na----li-t~S~psLr~Nri~~ 524 (625)
T KOG1777|consen 469 KTDSNPTLRRNKIYDGRDGGICIFNGGKGLLEHNEIFRNA----LI-TDSAPSLRRNRIHD 524 (625)
T ss_pred ecCCCcceeecceecCCCCcEEEecCCceeeechhhhhcc----cc-ccCChhhhcccccc
Confidence 9999999999999999999999999999999999999987 34 67899999999987
|
|
| >KOG1777|consensus | Back alignment and domain information |
|---|
| >TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein | Back alignment and domain information |
|---|
| >TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein | Back alignment and domain information |
|---|
| >COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein | Back alignment and domain information |
|---|
| >COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PLN02634 probable pectinesterase | Back alignment and domain information |
|---|
| >PLN02480 Probable pectinesterase | Back alignment and domain information |
|---|
| >PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans | Back alignment and domain information |
|---|
| >PLN02682 pectinesterase family protein | Back alignment and domain information |
|---|
| >PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A | Back alignment and domain information |
|---|
| >PLN02773 pectinesterase | Back alignment and domain information |
|---|
| >PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A | Back alignment and domain information |
|---|
| >TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein | Back alignment and domain information |
|---|
| >PLN02671 pectinesterase | Back alignment and domain information |
|---|
| >PLN02304 probable pectinesterase | Back alignment and domain information |
|---|
| >PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O | Back alignment and domain information |
|---|
| >PLN02432 putative pectinesterase | Back alignment and domain information |
|---|
| >PLN02176 putative pectinesterase | Back alignment and domain information |
|---|
| >PRK10531 acyl-CoA thioesterase; Provisional | Back alignment and domain information |
|---|
| >PLN02497 probable pectinesterase | Back alignment and domain information |
|---|
| >PLN02665 pectinesterase family protein | Back alignment and domain information |
|---|
| >PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O | Back alignment and domain information |
|---|
| >PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 | Back alignment and domain information |
|---|
| >PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A | Back alignment and domain information |
|---|
| >PLN02916 pectinesterase family protein | Back alignment and domain information |
|---|
| >PLN02933 Probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >PLN02708 Probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >PLN02745 Putative pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >PLN02201 probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >PLN02995 Probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >PLN02217 probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >PLN02488 probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >PLN02990 Probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >PLN02170 probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >PLN02713 Probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >PLN02506 putative pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >PLN02484 probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >PLN02468 putative pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >PLN02301 pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >PLN02197 pectinesterase | Back alignment and domain information |
|---|
| >PLN02314 pectinesterase | Back alignment and domain information |
|---|
| >PLN02416 probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional | Back alignment and domain information |
|---|
| >PLN02313 Pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A | Back alignment and domain information |
|---|
| >COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen | Back alignment and domain information |
|---|
| >PLN02188 polygalacturonase/glycoside hydrolase family protein | Back alignment and domain information |
|---|
| >PLN02793 Probable polygalacturonase | Back alignment and domain information |
|---|
| >PLN02218 polygalacturonase ADPG | Back alignment and domain information |
|---|
| >PLN03003 Probable polygalacturonase At3g15720 | Back alignment and domain information |
|---|
| >PLN02155 polygalacturonase | Back alignment and domain information |
|---|
| >PLN03010 polygalacturonase | Back alignment and domain information |
|---|
| >PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans | Back alignment and domain information |
|---|
| >PLN02698 Probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
| >smart00656 Amb_all Amb_all domain | Back alignment and domain information |
|---|
| >COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 | Back alignment and domain information |
|---|
| >PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A | Back alignment and domain information |
|---|
| >TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) | Back alignment and domain information |
|---|
| >TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) | Back alignment and domain information |
|---|
| >PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen | Back alignment and domain information |
|---|
| >PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes | Back alignment and domain information |
|---|
| >PLN02793 Probable polygalacturonase | Back alignment and domain information |
|---|
| >PLN02218 polygalacturonase ADPG | Back alignment and domain information |
|---|
| >PLN03003 Probable polygalacturonase At3g15720 | Back alignment and domain information |
|---|
| >PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes | Back alignment and domain information |
|---|
| >smart00656 Amb_all Amb_all domain | Back alignment and domain information |
|---|
| >PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
| >PLN03010 polygalacturonase | Back alignment and domain information |
|---|
| >PLN02155 polygalacturonase | Back alignment and domain information |
|---|
| >PLN02188 polygalacturonase/glycoside hydrolase family protein | Back alignment and domain information |
|---|
| >PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A | Back alignment and domain information |
|---|
| >PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 | Back alignment and domain information |
|---|
| >PLN02682 pectinesterase family protein | Back alignment and domain information |
|---|
| >PLN02480 Probable pectinesterase | Back alignment and domain information |
|---|
| >PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina | Back alignment and domain information |
|---|
| >PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina | Back alignment and domain information |
|---|
| >COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >PRK10531 acyl-CoA thioesterase; Provisional | Back alignment and domain information |
|---|
| >PLN02773 pectinesterase | Back alignment and domain information |
|---|
| >PLN02634 probable pectinesterase | Back alignment and domain information |
|---|
| >PLN02671 pectinesterase | Back alignment and domain information |
|---|
| >COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses | Back alignment and domain information |
|---|
| >PLN02665 pectinesterase family protein | Back alignment and domain information |
|---|
| >smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses | Back alignment and domain information |
|---|
| >PLN02432 putative pectinesterase | Back alignment and domain information |
|---|
| >PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 | Back alignment and domain information |
|---|
| >COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >PLN02933 Probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >PLN02916 pectinesterase family protein | Back alignment and domain information |
|---|
| >PLN02201 probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >PLN02995 Probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >PLN02497 probable pectinesterase | Back alignment and domain information |
|---|
| >PRK09752 adhesin; Provisional | Back alignment and domain information |
|---|
| >PLN02176 putative pectinesterase | Back alignment and domain information |
|---|
| >PLN02170 probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >PRK09752 adhesin; Provisional | Back alignment and domain information |
|---|
| >PLN02488 probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
| >PLN02304 probable pectinesterase | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 | Back alignment and structure |
|---|
Score = 72.6 bits (177), Expect = 2e-13
Identities = 70/366 (19%), Positives = 123/366 (33%), Gaps = 31/366 (8%)
Query: 74 IQAALDHGDELGQSAPLVFVHSGVYR--------GEFLVLDSDVIIIGAAPGNVAESVIL 125
IQAA+D G V++ +G YR L+L V + GA G +I
Sbjct: 22 IQAAIDAAYAAGGG--TVYLPAGEYRVSAAGEPGDGCLMLKDGVYLAGAGMGETVIKLID 79
Query: 126 ERDTESTVM----FVEGAKNAYLGHVTL---KFSPEAPSTVQHHKHYCLEVGEHATPTID 178
D + T M + E N + +TL + + + + G TI+
Sbjct: 80 GSDQKITGMVRSAYGEETSNFGMRDLTLDGNRDNTSGKVDGWFNGYIPGGDGADRDVTIE 139
Query: 179 HCIIRSTSVVGAAVCVSGVCASPTLRHCDISDCENVGLYVTDYAQGLYEDNEISRNALAG 238
+R S G + T+R D G ++E+N N G
Sbjct: 140 RVEVREMSGYG--FDPHEQTINLTIRDSVAHDNGLDGFVADYLVDSVFENNVAYANDRHG 197
Query: 239 IWVKNYANPIMRRNHIHHGRDVGIFTFDNGHIFPISNSNPTIRRNEIYNGHQGGVYIFGE 298
V + + N++ +G G SN I Y+ + GV +
Sbjct: 198 FNVVTSTHDFVMTNNVAYGNGSSGLVVQRGLEDLALPSNILIDGGAYYDNAREGVLLKMT 257
Query: 299 GRGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANT 358
+++ +I+GN +G+++ + D + N+IH +
Sbjct: 258 SDITLQNADIHGNGSSGVRVYGAQDVQILDNQIHDNAQAAAVPE------VLLQSFDDTA 311
Query: 359 LAGVWITTGSAPVLRRNRIHS--GKQVGVYFYDNG--HGKLEDNDIFNHLYSGVQIRTGS 414
A T + N I G+ ++G + L DNDI + +Q+ G
Sbjct: 312 GASGTYYTTLNTRIEGNTISGSANSTYGIQERNDGTDYSSLIDNDI-AGVQQPIQL-YGP 369
Query: 415 NPIIRG 420
+ + G
Sbjct: 370 HSTVSG 375
|
| >2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 | Back alignment and structure |
|---|
| >2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 | Back alignment and structure |
|---|
| >2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 | Back alignment and structure |
|---|
| >2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 | Back alignment and structure |
|---|
| >2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 | Back alignment and structure |
|---|
| >2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 | Back alignment and structure |
|---|
| >2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 | Back alignment and structure |
|---|
| >2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 | Back alignment and structure |
|---|
| >2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 | Back alignment and structure |
|---|
| >2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Length = 410 | Back alignment and structure |
|---|
| >2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Length = 410 | Back alignment and structure |
|---|
| >2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Length = 410 | Back alignment and structure |
|---|
| >2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Length = 410 | Back alignment and structure |
|---|
| >1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Length = 400 | Back alignment and structure |
|---|
| >1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Length = 400 | Back alignment and structure |
|---|
| >1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Length = 400 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1175 | |||
| 2inu_A | 410 | Insulin fructotransferase; right-handed parallel b | 99.82 | |
| 1dbg_A | 506 | Chondroitinase B; beta helix, polysaccharide lyase | 99.77 | |
| 1ru4_A | 400 | Pectate lyase, PEL9A; parallel beta-helix; 1.60A { | 99.73 | |
| 2pyg_A | 377 | Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli | 99.72 | |
| 1gq8_A | 319 | Pectinesterase; hydrolase, carboxylic ester hydrol | 99.51 | |
| 1xg2_A | 317 | Pectinesterase 1; protein-protein complex, beta he | 99.5 | |
| 2nsp_A | 342 | Pectinesterase A; michaelis complex, hydrolase; HE | 99.46 | |
| 2inu_A | 410 | Insulin fructotransferase; right-handed parallel b | 99.44 | |
| 3uw0_A | 364 | Pectinesterase; right-handed beta-helix, carbohydr | 99.4 | |
| 3gq8_A | 609 | Preneck appendage protein; beta helix, viral prote | 99.29 | |
| 3grh_A | 422 | YBHC, acyl-COA thioester hydrolase YBGC; beta-heli | 99.21 | |
| 2pyg_A | 377 | Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli | 99.2 | |
| 3gqn_A | 772 | Preneck appendage protein; beta helix, beta barrel | 99.16 | |
| 1dbg_A | 506 | Chondroitinase B; beta helix, polysaccharide lyase | 99.03 | |
| 1ru4_A | 400 | Pectate lyase, PEL9A; parallel beta-helix; 1.60A { | 98.99 | |
| 1bhe_A | 376 | PEHA, polygalacturonase; family 28 glycosyl hydrol | 98.9 | |
| 2uvf_A | 608 | Exopolygalacturonase; GH28, pectin, cell WALL, hyd | 98.88 | |
| 1hg8_A | 349 | Endopolygalacturonase; hydrolase, pectin degradati | 98.84 | |
| 2iq7_A | 339 | Endopolygalacturonase; parallel beta helix, hydrol | 98.83 | |
| 1ia5_A | 339 | Polygalacturonase; glycosylhydrolase, hydrolase; H | 98.82 | |
| 3jur_A | 448 | EXO-poly-alpha-D-galacturonosidase; beta-helix, ce | 98.73 | |
| 1nhc_A | 336 | Polygalacturonase I; beta-helix, hydrolase; HET: M | 98.71 | |
| 1rmg_A | 422 | Rgase A, rhamnogalacturonase A; hydrolase, inverti | 98.67 | |
| 1czf_A | 362 | Polygalacturonase II; beta helix, hydrolase; HET: | 98.61 | |
| 1pxz_A | 346 | Major pollen allergen JUN A 1; parallel beta-helix | 98.27 | |
| 1k5c_A | 335 | Endopolygalacturonase; beta helical structure, gly | 98.14 | |
| 3gq8_A | 609 | Preneck appendage protein; beta helix, viral prote | 98.05 | |
| 1idk_A | 359 | Pectin lyase A; signal, glycoprotein, multigene fa | 97.96 | |
| 3eqn_A | 758 | Glucan 1,3-beta-glucosidase; tandem beta-helix dom | 97.96 | |
| 1qcx_A | 359 | Pectin lyase B; beta-helix protein, plant cell WAL | 97.9 | |
| 1h80_A | 464 | IOTA-carrageenase; hydrolase, IOTA-carrageenan dou | 97.84 | |
| 3gqn_A | 772 | Preneck appendage protein; beta helix, beta barrel | 97.72 | |
| 1pcl_A | 355 | Pectate lyase E; lyase (acting on polysaccharides) | 97.64 | |
| 2uvf_A | 608 | Exopolygalacturonase; GH28, pectin, cell WALL, hyd | 97.49 | |
| 2iq7_A | 339 | Endopolygalacturonase; parallel beta helix, hydrol | 97.45 | |
| 1ia5_A | 339 | Polygalacturonase; glycosylhydrolase, hydrolase; H | 97.44 | |
| 3zsc_A | 340 | Pectate trisaccharide-lyase; hydrolase; HET: ADA A | 97.42 | |
| 1bhe_A | 376 | PEHA, polygalacturonase; family 28 glycosyl hydrol | 97.4 | |
| 2qy1_A | 330 | Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca | 97.4 | |
| 3vmv_A | 326 | Pectate lyase; polysaccharide lyase family 1, beta | 97.3 | |
| 1hg8_A | 349 | Endopolygalacturonase; hydrolase, pectin degradati | 97.23 | |
| 1air_A | 353 | Pectate lyase C, PELC; pectate cleavage, pectinoly | 97.23 | |
| 3jur_A | 448 | EXO-poly-alpha-D-galacturonosidase; beta-helix, ce | 97.21 | |
| 1nhc_A | 336 | Polygalacturonase I; beta-helix, hydrolase; HET: M | 97.2 | |
| 1rmg_A | 422 | Rgase A, rhamnogalacturonase A; hydrolase, inverti | 97.02 | |
| 1czf_A | 362 | Polygalacturonase II; beta helix, hydrolase; HET: | 96.99 | |
| 1dab_A | 539 | P.69 pertactin; pertussis beta helix, cell adhesio | 96.93 | |
| 1dab_A | 539 | P.69 pertactin; pertussis beta helix, cell adhesio | 96.91 | |
| 1pe9_A | 361 | Pectate lyase A; parallel beta helix; 1.60A {Erwin | 96.7 | |
| 1x0c_A | 549 | Isopullulanase; glycoside hydrolase family 49, gly | 96.58 | |
| 1vbl_A | 416 | Pectate lyase 47; PL 47, thermostable, bacillus su | 96.52 | |
| 1idk_A | 359 | Pectin lyase A; signal, glycoprotein, multigene fa | 96.38 | |
| 2vbk_A | 514 | Tailspike-protein; viral adhesion protein, viral p | 96.34 | |
| 2x6w_A | 600 | Tail spike protein; viral protein, beta-helix, hyd | 96.21 | |
| 1pxz_A | 346 | Major pollen allergen JUN A 1; parallel beta-helix | 96.16 | |
| 2o04_A | 399 | Pectate lyase, PL; hexasaccharide compound II, cal | 96.15 | |
| 1ogo_X | 574 | Dextranase; hydrolase, dextran degradation, glycos | 96.12 | |
| 3zsc_A | 340 | Pectate trisaccharide-lyase; hydrolase; HET: ADA A | 96.04 | |
| 1k5c_A | 335 | Endopolygalacturonase; beta helical structure, gly | 95.99 | |
| 1qcx_A | 359 | Pectin lyase B; beta-helix protein, plant cell WAL | 95.2 | |
| 1ogo_X | 574 | Dextranase; hydrolase, dextran degradation, glycos | 95.17 | |
| 1x0c_A | 549 | Isopullulanase; glycoside hydrolase family 49, gly | 94.89 | |
| 1gq8_A | 319 | Pectinesterase; hydrolase, carboxylic ester hydrol | 94.61 | |
| 1xg2_A | 317 | Pectinesterase 1; protein-protein complex, beta he | 94.6 | |
| 2qy1_A | 330 | Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca | 94.57 | |
| 3vmv_A | 326 | Pectate lyase; polysaccharide lyase family 1, beta | 94.36 | |
| 1air_A | 353 | Pectate lyase C, PELC; pectate cleavage, pectinoly | 93.46 | |
| 1pcl_A | 355 | Pectate lyase E; lyase (acting on polysaccharides) | 92.79 | |
| 3eqn_A | 758 | Glucan 1,3-beta-glucosidase; tandem beta-helix dom | 91.98 | |
| 1vbl_A | 416 | Pectate lyase 47; PL 47, thermostable, bacillus su | 90.66 | |
| 2o04_A | 399 | Pectate lyase, PL; hexasaccharide compound II, cal | 90.63 | |
| 1pe9_A | 361 | Pectate lyase A; parallel beta helix; 1.60A {Erwin | 88.52 | |
| 3uw0_A | 364 | Pectinesterase; right-handed beta-helix, carbohydr | 87.53 | |
| 2nsp_A | 342 | Pectinesterase A; michaelis complex, hydrolase; HE | 85.21 |
| >2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.9e-19 Score=198.09 Aligned_cols=296 Identities=16% Similarity=0.169 Sum_probs=195.2
Q ss_pred CcccCCCccEEEEeCceeee-eEEEECcc-eEEEecCCCCcceeEEEe------c-----CCCceEEEecCceeeEEeeE
Q psy675 81 GDELGQSAPLVFVHSGVYRG-EFLVLDSD-VIIIGAAPGNVAESVILE------R-----DTESTVMFVEGAKNAYLGHV 147 (1175)
Q Consensus 81 a~~gd~~~~~I~v~~G~Y~e-~~l~I~k~-v~l~G~g~g~~~~~v~i~------~-----~~~~~v~~~~g~~~~~l~~l 147 (1175)
|+||| +|.|+||+|++ ++++|+|| |||.|++.+.+ +-.|+ + +.+++|++..
T Consensus 54 A~pGd----vI~L~~G~Y~l~g~ivIdkp~LtL~G~~~g~~--s~~Id~~~~~~g~~~~~g~Gs~I~V~a---------- 117 (410)
T 2inu_A 54 ARPGA----AIIIPPGDYDLHTQVVVDVSYLTIAGFGHGFF--SRSILDNSNPTGWQNLQPGASHIRVLT---------- 117 (410)
T ss_dssp SCCCE----EEECCSEEEEECSCEEECCTTEEEECSCCCCC--CHHHHHTSCCTTCSCCSCCSEEEEECC----------
T ss_pred CCCCC----EEEECCCeeccCCcEEEecCcEEEEecCCCcc--eeEEecccccCcccccCCCCcEEEEec----------
Confidence 56787 99999999972 49999999 99999764421 00144 3 4455555431
Q ss_pred EEEeCCCCCccccccceeEEEECCCcceEEeeeEEEeCCCCCeEEEEEccCccceEeeeeEecC------cceeEEEee-
Q psy675 148 TLKFSPEAPSTVQHHKHYCLEVGEHATPTIDHCIIRSTSVVGAAVCVSGVCASPTLRHCDISDC------ENVGLYVTD- 220 (1175)
Q Consensus 148 ti~~~~~~~~~~~~~~~~~i~v~~~~~~~i~~c~i~~~~~~g~~v~v~g~~a~~~i~~c~i~~~------~~~GI~v~~- 220 (1175)
.+ .++.++.|...++|+|.+++|++ +++. +++|.+. ..+||++..
T Consensus 118 ----~~--------~~g~a~~V~~~g~~r~s~V~~~~-------v~I~---------G~~~~~~G~s~~~~dAGI~v~~~ 169 (410)
T 2inu_A 118 ----SP--------SAPQAFLVKRAGDPRLSGIVFRD-------FCLD---------GVGFTPGKNSYHNGKTGIEVASD 169 (410)
T ss_dssp ----CT--------TSCEEEEECCCSSSCEECCEEES-------CEEE---------CCCCSSSTTSCCCSCEEEEECSC
T ss_pred ----cc--------cccceeEEeeccCcccCCcEECC-------EEEE---------CCEeecCCCCcccCceeEEEecc
Confidence 00 12456777777788888887765 3333 3333222 368999986
Q ss_pred ceeEEEEeeEEEecCceeEEEeccCcceEEecEEEecccceEEEecCCCcccccCCcceEecceeeec-ccccEEEEecC
Q psy675 221 YAQGLYEDNEISRNALAGIWVKNYANPIMRRNHIHHGRDVGIFTFDNGHIFPISNSNPTIRRNEIYNG-HQGGVYIFGEG 299 (1175)
Q Consensus 221 ~s~~~ie~c~i~~~~~~gI~v~~~a~~~i~~~~I~~~~~~GI~~~~~g~g~~~~~s~~~i~~n~I~~~-~~~GI~v~~~~ 299 (1175)
.....+++|.|.... .||++.+...++|++|.|.+. +.||.++.++ ....|++|.+... .++||+++...
T Consensus 170 ~d~~~I~nn~i~~~~-fGI~l~~a~~~~I~~N~I~e~-GNgI~L~G~~-------~~~~I~~N~i~~~~dG~gIyl~ns~ 240 (410)
T 2inu_A 170 NDSFHITGMGFVYLE-HALIVRGADALRVNDNMIAEC-GNCVELTGAG-------QATIVSGNHMGAGPDGVTLLAENHE 240 (410)
T ss_dssp EESCEEESCEEESCS-EEEEETTEESCEEESCEEESS-SEEEEECSCE-------ESCEEESCEEECCTTSEEEEEESEE
T ss_pred CCeEEEECCEEeccc-EEEEEccCCCcEEECCEEEec-CCceeecccc-------ccceEecceeeecCCCCEEEEEeCC
Confidence 445689999999764 799999999999999999864 3677764422 2346667777664 34568888888
Q ss_pred ceEEEeeEEEecccccEEEecCCCceEEceEEEcCccccEEEEecc--eeEEeeeEEeecceeeEEEecCCCceEeeeEE
Q psy675 300 RGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKG--VGLIEENEVYANTLAGVWITTGSAPVLRRNRI 377 (1175)
Q Consensus 300 ~~~i~~n~I~~n~~~GI~i~~~s~~~i~~n~i~~~~~~GI~v~~~s--~~~i~~n~i~~n~~~GI~v~~~s~~~i~~n~i 377 (1175)
..+|++|.+....+.||++..+.+..+++|++++.. .|++++... ..++++|.|..+. .|..++.+.. .
T Consensus 241 ~~~I~~N~i~~~~R~gIh~m~s~~~~i~~N~f~~~~-~Gi~~M~s~~~~n~v~~N~f~~~~-~g~a~M~s~~-------~ 311 (410)
T 2inu_A 241 GLLVTGNNLFPRGRSLIEFTGCNRCSVTSNRLQGFY-PGMLRLLNGCKENLITANHIRRTN-EGYPPFIGRG-------N 311 (410)
T ss_dssp SCEEESCEECSCSSEEEEEESCBSCEEESCEEEESS-SCSEEEESSCBSCEEESCEEEEEC-CCSGGGTTCC-------C
T ss_pred CCEEECCCcccCcceEEEEEccCCCEEECCEEecce-eEEEEEEcCCCCCEEECCEEeccC-CceeeeeccC-------C
Confidence 888888888777778888888888888888888766 778777755 7778888887775 3444443322 1
Q ss_pred EeCceeeEEEEeCCeeEEeeceeeccceecEEEecCCccEEeccEEeCCCCCcEEEEeCceeeEEeeEEeccc
Q psy675 378 HSGKQVGVYFYDNGHGKLEDNDIFNHLYSGVQIRTGSNPIIRGNKIWGGQNGGVLVYNGGLGLLEQNEIFDNA 450 (1175)
Q Consensus 378 ~~~~~~GI~v~~~~~~~i~~n~I~~n~~~GI~i~~~s~~~i~~n~i~~~~~~GI~l~~~~~~~i~~n~I~~n~ 450 (1175)
......||++.......+++|.|..+. .+.++..+ +....||++..+....|++|.|..|.
T Consensus 312 ~~d~~~Gill~~~~~~~i~~N~i~~~~-~~~~i~~s-----------~~~p~~i~i~~g~~N~i~~N~iv~N~ 372 (410)
T 2inu_A 312 GLDDLYGVVHIAGDNNLISDNLFAYNV-PPANIAPA-----------GAQPTQILIAGGDANVVALNHVVSDV 372 (410)
T ss_dssp SCCTTSCSEEEESSSCEEEEEEEEEEC-CGGGSSST-----------TCCCEEEEEEECBSCEEEEEEEEESS
T ss_pred CCCccEeeEEEeecCcEEECCEEEeec-Cccccccc-----------cCCCEEEEeecCCccEEECCEEEecc
Confidence 222346888877777788888777763 12222111 00123556666666666666665543
|
| >1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* | Back alignment and structure |
|---|
| >1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 | Back alignment and structure |
|---|
| >2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* | Back alignment and structure |
|---|
| >1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 | Back alignment and structure |
|---|
| >1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} | Back alignment and structure |
|---|
| >2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A | Back alignment and structure |
|---|
| >2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* | Back alignment and structure |
|---|
| >3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
| >3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A | Back alignment and structure |
|---|
| >3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} | Back alignment and structure |
|---|
| >2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* | Back alignment and structure |
|---|
| >1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* | Back alignment and structure |
|---|
| >1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 | Back alignment and structure |
|---|
| >1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 | Back alignment and structure |
|---|
| >2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* | Back alignment and structure |
|---|
| >1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 | Back alignment and structure |
|---|
| >2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} | Back alignment and structure |
|---|
| >1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* | Back alignment and structure |
|---|
| >3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} | Back alignment and structure |
|---|
| >1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 | Back alignment and structure |
|---|
| >1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 | Back alignment and structure |
|---|
| >1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 | Back alignment and structure |
|---|
| >1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 | Back alignment and structure |
|---|
| >1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* | Back alignment and structure |
|---|
| >3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A | Back alignment and structure |
|---|
| >1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A | Back alignment and structure |
|---|
| >3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* | Back alignment and structure |
|---|
| >1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 | Back alignment and structure |
|---|
| >1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A | Back alignment and structure |
|---|
| >1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 | Back alignment and structure |
|---|
| >2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* | Back alignment and structure |
|---|
| >2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} | Back alignment and structure |
|---|
| >1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* | Back alignment and structure |
|---|
| >3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} | Back alignment and structure |
|---|
| >1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 | Back alignment and structure |
|---|
| >2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A | Back alignment and structure |
|---|
| >3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* | Back alignment and structure |
|---|
| >1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 | Back alignment and structure |
|---|
| >1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* | Back alignment and structure |
|---|
| >3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} | Back alignment and structure |
|---|
| >1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 | Back alignment and structure |
|---|
| >1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 | Back alignment and structure |
|---|
| >1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 | Back alignment and structure |
|---|
| >1dab_A P.69 pertactin; pertussis beta helix, cell adhesion; 2.50A {Bordetella pertussis} SCOP: b.80.1.7 PDB: 2iou_G | Back alignment and structure |
|---|
| >1dab_A P.69 pertactin; pertussis beta helix, cell adhesion; 2.50A {Bordetella pertussis} SCOP: b.80.1.7 PDB: 2iou_G | Back alignment and structure |
|---|
| >1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A | Back alignment and structure |
|---|
| >1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* | Back alignment and structure |
|---|
| >1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} | Back alignment and structure |
|---|
| >1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A | Back alignment and structure |
|---|
| >2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* | Back alignment and structure |
|---|
| >2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* | Back alignment and structure |
|---|
| >1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 | Back alignment and structure |
|---|
| >2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* | Back alignment and structure |
|---|
| >1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* | Back alignment and structure |
|---|
| >3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} | Back alignment and structure |
|---|
| >1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* | Back alignment and structure |
|---|
| >1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 | Back alignment and structure |
|---|
| >1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* | Back alignment and structure |
|---|
| >1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* | Back alignment and structure |
|---|
| >1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 | Back alignment and structure |
|---|
| >1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} | Back alignment and structure |
|---|
| >2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A | Back alignment and structure |
|---|
| >3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* | Back alignment and structure |
|---|
| >1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* | Back alignment and structure |
|---|
| >1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 | Back alignment and structure |
|---|
| >3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* | Back alignment and structure |
|---|
| >1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} | Back alignment and structure |
|---|
| >2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* | Back alignment and structure |
|---|
| >1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A | Back alignment and structure |
|---|
| >3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
| >2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1175 | ||||
| d1ofla_ | 481 | b.80.1.4 (A:) Chondroitinase B {Pedobacter heparin | 3e-08 | |
| d1ofla_ | 481 | b.80.1.4 (A:) Chondroitinase B {Pedobacter heparin | 5e-08 | |
| d1ofla_ | 481 | b.80.1.4 (A:) Chondroitinase B {Pedobacter heparin | 3e-07 | |
| d1ofla_ | 481 | b.80.1.4 (A:) Chondroitinase B {Pedobacter heparin | 1e-05 | |
| d1ru4a_ | 400 | b.80.1.9 (A:) Pectate transeliminase {Erwinia chry | 1e-05 | |
| d1ru4a_ | 400 | b.80.1.9 (A:) Pectate transeliminase {Erwinia chry | 4e-04 | |
| d1ru4a_ | 400 | b.80.1.9 (A:) Pectate transeliminase {Erwinia chry | 0.002 |
| >d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Length = 481 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Chondroitinase B domain: Chondroitinase B species: Pedobacter heparinus [TaxId: 984]
Score = 55.3 bits (132), Expect = 3e-08
Identities = 47/413 (11%), Positives = 104/413 (25%), Gaps = 55/413 (13%)
Query: 72 DTIQAALDH---GDELGQSAPLVFVHSGVYRGEFLVL------DSDVIIIGAAPGNVAES 122
+T+ + G V + G Y+ L++ + I PG
Sbjct: 7 ETLYQVVKEVKPGGL-------VQIADGTYKDVQLIVSNSGKSGLPITIKALNPG----K 55
Query: 123 VILERDTESTVMFVEGAKNAYLGHVTLKFSPEAPSTVQHHKHYCLEVGEHATPTIDHCII 182
V D + + ++ L + K A + H + + I C+
Sbjct: 56 VFFTGDAKVEL----RGEHLILEGIWFKDGNRAIQAWKSHGPGLVAIYGSYN-RITACVF 110
Query: 183 RSTSVVGAAVCVSGV------CASPTLRHCDISDCENVGLYVTDYAQGLYEDNEISRNAL 236
+A + + + HC +D + +
Sbjct: 111 DCFDEANSAYITTSLTEDGKVPQHCRIDHCSFTDKITFDQVINLNNTARAIKDGSVGGPA 170
Query: 237 AGIWV-KNYANPIMRRNHIHHGRDVGIFTFDNGHIFPISNSNPTIRRNEIYNGHQGGVYI 295
V + + + + G +G + + N I
Sbjct: 171 MYHRVDHCFFSNPQKPGNAGGGIRIGYYRN--------DIGRCLVDSNLFMRQDSEAEII 222
Query: 296 FGEGRGLIEHNNIYGNALAGIQIRTSSDPIVRHNKIHHGQH----GGVYVHEKGVGLIEE 351
+ + + + N Y N + R + +N GG++V +I
Sbjct: 223 TSKSQENVYYGNTYLNCQGTMNFRHGDHQVAINNFYIGNDQRFGYGGMFVWGSRH-VIAC 281
Query: 352 NEVYANTLAGVWITTGSAPV----------LRRNRIHSGKQVGVYFYDNGHGKLEDNDIF 401
N + I + + V Y L++
Sbjct: 282 NYFELSETIKSRGNAALYLNPGAMASEHALAFDMLIANNAFINVNGYAIHFNPLDERRKE 341
Query: 402 NHLYSGVQIRTGSNPIIRGNKIWGGQNGGVLVYNGGLGLLEQNEIFDNAMAGV 454
+ ++ T +++GN + + + + +N N GV
Sbjct: 342 YCAANRLKFETPHQLMLKGNLFFKDKPYVYPFFKDDYFIAGKNSWTGNVALGV 394
|
| >d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Length = 481 | Back information, alignment and structure |
|---|
| >d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Length = 481 | Back information, alignment and structure |
|---|
| >d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Length = 481 | Back information, alignment and structure |
|---|
| >d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Length = 400 | Back information, alignment and structure |
|---|
| >d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Length = 400 | Back information, alignment and structure |
|---|
| >d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Length = 400 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1175 | |||
| d1ofla_ | 481 | Chondroitinase B {Pedobacter heparinus [TaxId: 984 | 99.54 | |
| d1gq8a_ | 319 | Pectin methylesterase PemA {Carrot (Daucus carota) | 99.32 | |
| d1ru4a_ | 400 | Pectate transeliminase {Erwinia chrysanthemi [TaxI | 99.2 | |
| d1qjva_ | 342 | Pectin methylesterase PemA {Erwinia chrysanthemi [ | 99.17 | |
| d1bhea_ | 376 | Polygalacturonase {Erwinia carotovora, subsp. caro | 98.92 | |
| d1hg8a_ | 349 | Polygalacturonase {Fusarium moniliforme [TaxId: 11 | 98.24 | |
| d1rmga_ | 422 | Rhamnogalacturonase A {Aspergillus aculeatus [TaxI | 98.14 | |
| d1ia5a_ | 339 | Polygalacturonase {Fungus (Aspergillus aculeatus) | 97.88 | |
| d1ofla_ | 481 | Chondroitinase B {Pedobacter heparinus [TaxId: 984 | 97.84 | |
| d1nhca_ | 336 | Polygalacturonase {Fungus (Aspergillus niger), end | 97.78 | |
| d1pxza_ | 346 | Major pollen allergen Jun a 1 {Ozark white cedar ( | 97.61 | |
| d1czfa_ | 335 | Polygalacturonase {Fungus (Aspergillus niger), end | 97.56 | |
| d1idka_ | 359 | Pectin lyase {Aspergillus niger, type A [TaxId: 50 | 97.51 | |
| d1qcxa_ | 359 | Pectin lyase {Aspergillus niger, type B [TaxId: 50 | 97.26 | |
| d1k5ca_ | 333 | Polygalacturonase {Fungus (Stereum purpureum), end | 97.11 | |
| d1ogmx2 | 373 | Dextranase, catalytic domain {Penicillium miniolut | 97.1 | |
| d1bhea_ | 376 | Polygalacturonase {Erwinia carotovora, subsp. caro | 96.89 | |
| d1ru4a_ | 400 | Pectate transeliminase {Erwinia chrysanthemi [TaxI | 96.86 | |
| d1pcla_ | 355 | Pectate lyase {Erwinia chrysanthemi, type E [TaxId | 96.62 | |
| d1bn8a_ | 399 | Pectate lyase {Bacillus subtilis [TaxId: 1423]} | 96.6 | |
| d1hg8a_ | 349 | Polygalacturonase {Fusarium moniliforme [TaxId: 11 | 96.21 | |
| d1ia5a_ | 339 | Polygalacturonase {Fungus (Aspergillus aculeatus) | 96.14 | |
| d1nhca_ | 336 | Polygalacturonase {Fungus (Aspergillus niger), end | 95.91 | |
| d1pe9a_ | 361 | Pectate lyase {Erwinia chrysanthemi, type A [TaxId | 95.83 | |
| d1czfa_ | 335 | Polygalacturonase {Fungus (Aspergillus niger), end | 95.7 | |
| d1pxza_ | 346 | Major pollen allergen Jun a 1 {Ozark white cedar ( | 94.84 | |
| d1ogmx2 | 373 | Dextranase, catalytic domain {Penicillium miniolut | 94.63 | |
| d1idka_ | 359 | Pectin lyase {Aspergillus niger, type A [TaxId: 50 | 94.57 | |
| d1o88a_ | 353 | Pectate lyase {Erwinia chrysanthemi, type C [TaxId | 94.4 | |
| d1o88a_ | 353 | Pectate lyase {Erwinia chrysanthemi, type C [TaxId | 94.33 | |
| d1qcxa_ | 359 | Pectin lyase {Aspergillus niger, type B [TaxId: 50 | 92.69 | |
| d1rmga_ | 422 | Rhamnogalacturonase A {Aspergillus aculeatus [TaxI | 92.03 | |
| d1k5ca_ | 333 | Polygalacturonase {Fungus (Stereum purpureum), end | 91.12 | |
| d1bn8a_ | 399 | Pectate lyase {Bacillus subtilis [TaxId: 1423]} | 89.29 | |
| d1gq8a_ | 319 | Pectin methylesterase PemA {Carrot (Daucus carota) | 81.21 | |
| d1pcla_ | 355 | Pectate lyase {Erwinia chrysanthemi, type E [TaxId | 80.25 | |
| d2ovrb1 | 102 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 80.07 |
| >d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Chondroitinase B domain: Chondroitinase B species: Pedobacter heparinus [TaxId: 984]
Probab=99.54 E-value=5.1e-14 Score=167.12 Aligned_cols=263 Identities=17% Similarity=0.176 Sum_probs=139.0
Q ss_pred CCcchHHHHHhcCcccCCCccEEEEeCceeeeeEEEE------CcceEEEecCCCCcceeEEEecCCCceEEEecCceee
Q psy675 69 AHFDTIQAALDHGDELGQSAPLVFVHSGVYRGEFLVL------DSDVIIIGAAPGNVAESVILERDTESTVMFVEGAKNA 142 (1175)
Q Consensus 69 ~~~~tIq~Al~~a~~gd~~~~~I~v~~G~Y~e~~l~I------~k~v~l~G~g~g~~~~~v~i~~~~~~~v~~~~g~~~~ 142 (1175)
+..+|||+||++|+||| +|+|+||+|++..|.+ ++||+|.+++++. |+|.+ ++.+.+. +..+
T Consensus 4 ~~~~tiq~Ai~~a~pGD----tI~l~~GtY~~~~i~~~~~Gt~~~pIti~a~~~g~----v~i~G--~s~i~i~--g~~v 71 (481)
T d1ofla_ 4 ASNETLYQVVKEVKPGG----LVQIADGTYKDVQLIVSNSGKSGLPITIKALNPGK----VFFTG--DAKVELR--GEHL 71 (481)
T ss_dssp CSHHHHHHHHHHCCTTC----EEEECSEEEETCEEEECCCCBTTBCEEEEESSTTS----EEEEE--SCEEEEC--SSSE
T ss_pred CChHHHHHHHHhCCCCC----EEEECCCEEEcCEEEeccCcccCCCEEEEeCCCCc----eEEcC--CCeEEEE--eCCE
Confidence 35689999999999999 9999999999734655 4679999988764 47765 4567776 6789
Q ss_pred EEeeEEEEeCCCCCccccccceeEEEECCCcceEEeeeEEEeCCCCCeE-EEEEc-----cCccceEeeeeEecCcceeE
Q psy675 143 YLGHVTLKFSPEAPSTVQHHKHYCLEVGEHATPTIDHCIIRSTSVVGAA-VCVSG-----VCASPTLRHCDISDCENVGL 216 (1175)
Q Consensus 143 ~l~~lti~~~~~~~~~~~~~~~~~i~v~~~~~~~i~~c~i~~~~~~g~~-v~v~g-----~~a~~~i~~c~i~~~~~~GI 216 (1175)
.|++|+|+............ ..++........++.+|.|+........ ..... .....+|++|.|.+....|+
T Consensus 72 ~i~Gl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~n~~I~~n~~~~~~~~G~ 150 (481)
T d1ofla_ 72 ILEGIWFKDGNRAIQAWKSH-GPGLVAIYGSYNRITACVFDCFDEANSAYITTSLTEDGKVPQHCRIDHCSFTDKITFDQ 150 (481)
T ss_dssp EEESCEEEEECCCGGGCCTT-SCCSEEECSSSCEEESCEEESCCSSCSCSEEECCCTTCCCCCSCEEESCEEECCCSSSC
T ss_pred EEeCeEEECCCCccceeecc-CCceEEeEeecceEeeeEeecccccccceeccceeEEEeeccceEEECceEecCCCCcc
Confidence 99999999765432111111 1111122235677777777764221100 00000 01234555555555443443
Q ss_pred EEeeceeEE-EEeeEEEecCceeEEEeccCcceEEecEEEecccceEEEecCCCcccccCCcceEecceeeecccccEEE
Q psy675 217 YVTDYAQGL-YEDNEISRNALAGIWVKNYANPIMRRNHIHHGRDVGIFTFDNGHIFPISNSNPTIRRNEIYNGHQGGVYI 295 (1175)
Q Consensus 217 ~v~~~s~~~-ie~c~i~~~~~~gI~v~~~a~~~i~~~~I~~~~~~GI~~~~~g~g~~~~~s~~~i~~n~I~~~~~~GI~v 295 (1175)
.+....... +.+... ........+.++.+.... +.++...++.+
T Consensus 151 ~i~~~~~~~~~~~~~~---------~~~~~~~~I~~n~~~~~~--------------------------~~gn~~~~i~~ 195 (481)
T d1ofla_ 151 VINLNNTARAIKDGSV---------GGPAMYHRVDHCFFSNPQ--------------------------KPGNAGGGIRI 195 (481)
T ss_dssp SEEECSSCCCSCCCSC---------CCCCCCCEEESCEEEECC--------------------------CSSSCCCSEEE
T ss_pred EEEecCCCceeecCcc---------cccccccEEEeeEecCcc--------------------------ccCCceeEEEe
Confidence 322111000 000000 000111222233332211 11112222222
Q ss_pred ----EecCceEEEeeEEEecc-cccEEEecCCCceEEceEEEcCccccEEEEecceeEEeeeEEeecce----eeEEEec
Q psy675 296 ----FGEGRGLIEHNNIYGNA-LAGIQIRTSSDPIVRHNKIHHGQHGGVYVHEKGVGLIEENEVYANTL----AGVWITT 366 (1175)
Q Consensus 296 ----~~~~~~~i~~n~I~~n~-~~GI~i~~~s~~~i~~n~i~~~~~~GI~v~~~s~~~i~~n~i~~n~~----~GI~v~~ 366 (1175)
...+..+|++|.+.++. ..+|....+.+.+|++|++.++. .|+.+......++++|.|.++.. .||.+..
T Consensus 196 G~s~~~~sn~~v~nN~~~~~~g~~~ii~~~s~~n~I~nN~~~~~~-ggi~~~~g~~~~i~~N~~~~n~~~~~~gGi~v~~ 274 (481)
T d1ofla_ 196 GYYRNDIGRCLVDSNLFMRQDSEAEIITSKSQENVYYGNTYLNCQ-GTMNFRHGDHQVAINNFYIGNDQRFGYGGMFVWG 274 (481)
T ss_dssp CSSTTCBCCCEEESCEEEEECSSSEEEEEESBTCEEESCEEESCS-SEEEEEECSSCEEESCEEEECSSSSCBCCEEECS
T ss_pred eeEeeccCCEEEEeeeEEccCCceEEEEecCCCcEEeeeEEecCc-ceEEEccccCcEEECCEEECCCCcCccceEEEEc
Confidence 12234555666665543 23444445566667777776665 56666666666777777766642 3566654
Q ss_pred CCCceEeeeEEEeCc
Q psy675 367 GSAPVLRRNRIHSGK 381 (1175)
Q Consensus 367 ~s~~~i~~n~i~~~~ 381 (1175)
. ..++++|.|.+..
T Consensus 275 ~-~~~I~nN~~~~~~ 288 (481)
T d1ofla_ 275 S-RHVIACNYFELSE 288 (481)
T ss_dssp B-SCEEESCEEEESS
T ss_pred C-CeEEECcEEECCC
Confidence 3 4566777776654
|
| >d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} | Back information, alignment and structure |
|---|
| >d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
| >d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
| >d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
| >d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} | Back information, alignment and structure |
|---|
| >d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} | Back information, alignment and structure |
|---|
| >d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} | Back information, alignment and structure |
|---|
| >d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} | Back information, alignment and structure |
|---|
| >d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} | Back information, alignment and structure |
|---|
| >d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} | Back information, alignment and structure |
|---|
| >d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} | Back information, alignment and structure |
|---|
| >d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} | Back information, alignment and structure |
|---|
| >d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} | Back information, alignment and structure |
|---|
| >d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} | Back information, alignment and structure |
|---|
| >d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} | Back information, alignment and structure |
|---|
| >d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
| >d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
| >d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} | Back information, alignment and structure |
|---|
| >d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} | Back information, alignment and structure |
|---|
| >d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} | Back information, alignment and structure |
|---|
| >d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} | Back information, alignment and structure |
|---|
| >d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} | Back information, alignment and structure |
|---|
| >d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} | Back information, alignment and structure |
|---|
| >d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} | Back information, alignment and structure |
|---|
| >d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} | Back information, alignment and structure |
|---|
| >d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} | Back information, alignment and structure |
|---|
| >d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} | Back information, alignment and structure |
|---|
| >d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} | Back information, alignment and structure |
|---|
| >d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} | Back information, alignment and structure |
|---|
| >d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} | Back information, alignment and structure |
|---|
| >d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} | Back information, alignment and structure |
|---|
| >d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} | Back information, alignment and structure |
|---|
| >d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} | Back information, alignment and structure |
|---|
| >d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|