Psyllid ID: psy6791

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290---
Protein Sequence
MDEDHSHNELLDEYQEPTGPDNRPTFARLHIVARNFCGFDEAELTTLFKDQSTLPDGDLVPYIPTLEELRYVLKKPIMRKLKAVNFTIEMNYEQIRFVEKYYMDHVDYWPLCVKLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAIDIHADTPEEWNDFRANNDFDEISGKPDLRLRAAKTTPVSVKDVKLRDKIYNYIAKHFSPTVLHVVDSKKMHPIDNDNPAFDVLIVSNHFNNLTITQRTMLMHDYLRDFINEGVQFRLHRTMLMHDYLRDFINEGVQFRLHNK
Secondary Structure (PSIPRED)
cccccccHHHHHHHccccccccccccEEEEEEEcccccccHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHEEEEEEEcccEEHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccEEEEEccccccHHHccccccccccccccccccEEccccccEEEcccHHHHHHHHHHHHHccccEEEEEcccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHcccEEEEHHHHHHHHHHHHHHHcccEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHcccccccccccHHHHHHHHHHcccccHHHHHHHHcccccccccccccccccHHHHHHHHHcHHHHHHHHHHHEHHHcHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHccccccHHcccccccEEEEccccccEHHcHHHHHHHHHHHHHHccccEEEEEcccccccccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHcccEEEHHHHHHHHHHHHHHHHcccEEEEccc
Coil and Loop (DISEMBL)
mdedhshnelldeyqeptgpdnrptfARLHIVARNFCGFDEAELTTLFkdqstlpdgdlvpyipTLEELRYVLKKPIMRKLKAVNFTIEMNYEQIRFVEKYYMDHVDYWPLCVKLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAgcaidihadtpeewndfranndfdeisgkpdlrlraakttpvsvkdvklRDKIYNYIAkhfsptvlhvvdskkmhpidndnpafDVLIVSNHFNNLTITQRTMLMHDYLRDFINEGVQFRLHRTMLMHDYLRDFINEGVQFRLHNK
Flexible Loop (DISEMBL)
MDEDHSHNELLdeyqeptgpdnRPTFARLHIVARNFCGFDEAELTTLfkdqstlpdgdLVPYIPTLEELRYVLKKPIMRKLKAVNFTIEMNYEQIRFVEKYYMDHVDYWPLCVKLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAIDIHADTPEEWNDFRANNDFdeisgkpdlrlraakttpvsvkdvklrDKIYNYIAKHFSPTVLHVVDSKKMHPIDNDNPAFDVLIVSNHFNNLTITQRTMLMHDYLRDFINEGVQFRLHRTMLMHDYLRDFINEGVQFRLHNK
Low Complexity Region (SEG)
MDEDHSHNELLDEYQEPTGPDNRPTFARLHIVARNFCGFDEAELTTLFKDQSTLPDGDLVPYIPTLEELRYVLKKPIMRKLKAVNFTIEMNYEQIRFVEKYYMDHVDYWPLCVKLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAIDIHADTPEEWNDFRANNDFDEISGKPDLRLRAAKTTPVSVKDVKLRDKIYNYIAKHFSPTVLHVVDSKKMHPIDNDNPAFDVLIVSNHFNNLTITQRTMLMHDYLRDFINEGVQFRLHRTMLMHDYLRDFINEGVQFRLHNK
Disordered region (IsUnstruct)
************************TFARLHIVARNFCGFDEAELTTLFKDQSTLPDGDLVPYIPTLEELRYVLKKPIMRKLKAVNFTIEMNYEQIRFVEKYYMDHVDYWPLCVKLHIVSRLFQNKTK**RHAMVHEALRDEMLKREAGCAIDIHADTPEEWNDFRANNDFD*******LRLRAAKTTPVSVKDVKLRDKIYNYIAKHFSPTVLHVVDSKKMHPIDNDNPAFDVLIVSNHFNNLTITQRTMLMHDYLRDFINEGVQFRLHRTMLMHDYLRDFINEGVQFR****
Disordered Region (DISOPRED)
******H**************NRPTFARLHIVARNFCGFDEAELTTLFKDQSTLPDGDLVPYIPTLEELRYVLKKPIMRKLKAVNFTIEMNYEQIRFVEKYYMDHVDYWPLCVKLHIVSRLFQNKT**ER*AMVHEALRDEMLKREAGCAIDIHADTPEEWNDFRANNDFDEISGKPDLRLRAAKTTPVSVKDVKLRDKIYNYIAKHFSPTVLHVVDSKKMHPIDNDNPAFDVLIVSNHFNNLTITQRTMLMHDYLRDFINEGVQFRLHRTMLMHDYLRDFINEGVQFRL***
Disordered Region (DISEMBL)
**********LDEYQEPTGPDNRPTFARLHIVARNFCGFDEAELTTLFKDQSTLPDGDLVPYIPTLEELRYVLKKPIMRKLKAVNFTIEMNYEQIRFVEKYYMDHVDYWPLCVKLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAIDIHADTPEEWNDFRANNDFDEISGKPDLRLRAAKTTPVSVKDVKLRDKIYNYIAKHFSPTVLHVVDSKKMHPIDNDNPAFDVLIVSNHFNNLTITQRTMLMHDYLRDFINEGVQFRLHRTMLMHDYLRDFINEGVQFRLHNK
Disordered Region (DISPRO)
*******NELLDEYQEPTGPDNRPTFARLHIVARNFCGFDEAELTTLFKDQSTLPDGDLVPYIPTLEELRYVLKKPIMRKLKAVNFTIEMNYEQIRFVEKYYMDHVDYWPLCVKLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAIDIHADTPEEWNDFRANNDFDEISGKPDLRLRAAKTTPVSVKDVKLRDKIYNYIAKHFSPTVLHVVDSKKMHPIDNDNPAFDVLIVSNHFNNLTITQRTMLMHDYLRDFINEGVQFRLHRTMLMHDYLRDFINEGVQFRLHN*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDEDHSHNELLDEYQEPTGPDNRPTFARLHIVARNFCGFDEAELTTLFKDQSTLPDGDLVPYIPTLEELRYVLKKPIMRKLKAVNFTIEMNYEQIRFVEKYYMDHVDYWPLCVKLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAIDIHADTPEEWNDFRANNDFDEISGKPDLRLRAAKTTPVSVKDVKLRDKIYNYIAKHFSPTVLHVVDSKKMHPIDNDNPAFDVLIVSNHFNNLTITQRTMLMHDYLRDFINEGVQFRLHRTMLMHDYLRDFINEGVQFRLHNK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

No hits with e-value below 0.001 by BLAST

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	293
pfam01722	72	pfam01722, BolA, BolA-like protein	1e-06
COG0271	90	COG0271, BolA, Stress-induced morphogen (activity	8e-05

>gnl|CDD|216662 pfam01722, BolA, BolA-like protein

 Score = 44.9 bits (107), Expect = 1e-06
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 6/50 (12%)

Query: 114 KLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGC--AIDIHADTPEEW 161
           K+ +VS  F+ K+  +RH +V+ AL++E+    A    A+ I   TPEEW
Sbjct: 27  KVVVVSDAFEGKSLVKRHRLVYAALKEEL----ASGIHALSIKTYTPEEW 72

This family consist of the morphoprotein BolA from E. coli and its various homologues. In E. coli over expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase. BolA is also induced by stress during early stages of growth and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5. Length = 72

>gnl|CDD|223349 COG0271, BolA, Stress-induced morphogen (activity unknown) [Signal transduction mechanisms]

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 2/48 (4%)

Query: 114 KLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAIDIHADTPEEW 161
           K+ IVS  FQ K+   RH +V+ AL+DE+       A+ +H  TPEEW
Sbjct: 42  KVVIVSEAFQGKSLVARHRLVYSALKDEL--SGGIHALALHTYTPEEW 87

Length = 90

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	293
PRK11628	105	transcriptional regulator BolA; Provisional	99.95
PF01722	76	BolA: BolA-like protein; InterPro: IPR002634 This	99.94
PRK11628	105	transcriptional regulator BolA; Provisional	99.94
COG0271	90	BolA Stress-induced morphogen (activity unknown) [	99.94
COG0271	90	BolA Stress-induced morphogen (activity unknown) [	99.94
PF01722	76	BolA: BolA-like protein; InterPro: IPR002634 This	99.92
KOG2313|consensus	100		99.88
KOG2313|consensus	100		99.86
KOG3348|consensus	85		99.86
COG5007	80	Predicted transcriptional regulator, BolA superfam	99.86
COG5007	80	Predicted transcriptional regulator, BolA superfam	99.83
KOG3348|consensus	85		99.82

>PRK11628 transcriptional regulator BolA; Provisional

Probab=99.95  E-value=1.3e-28  Score=201.12  Aligned_cols=86  Identities=22%  Similarity=0.397  Sum_probs=82.8

Q ss_pred             hhHHHHHHHHHHhcCCCceEEEEeCCCCCCCC-CCCCceEEEEEccccCCCCHhHHHHHHHHHHHHHHhccccccccccc
Q psy6791         194 VKLRDKIYNYIAKHFSPTVLHVVDSKKMHPID-NDNPAFDVLIVSNHFNNLTITQRTMLMHDYLRDFINEGVQFRLHRTM  272 (293)
Q Consensus       194 ~~~~e~Ik~kL~~~l~p~~LeV~DeS~~H~~~-g~gsHF~ViIVS~~F~GlS~VqRHRlVy~~L~dei~~~IH~~~~~AL  272 (293)
                      |+..++|+++|+++|+|.+|+|+|+|++|+++ |+++||+|+|||+.|+|||+|+|||+||++|+++|.++||     ||
T Consensus         1 mm~~~~I~~~L~~~l~~~~l~V~d~S~~H~~~~g~~~Hf~v~IVS~~F~G~s~v~RHRlVy~~L~~~i~~~IH-----AL   75 (105)
T PRK11628          1 MMIREQIEEKLRAAFQPVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVH-----AL   75 (105)
T ss_pred             CCcHHHHHHHHHhhCCCcEEEEEECcccccCCCCCCceEEEEEEChHhCCCCHHHHHHHHHHHHHHHHhCCcc-----ce
Confidence            56789999999999999999999999999998 8899999999999999999999999999999999998899     99


Q ss_pred             ceeecchHHHhc
Q psy6791         273 LMHDYLRDFINE  284 (293)
Q Consensus       273 sIktyTpeE~~~  284 (293)
                      +|+||||+||+.
T Consensus        76 si~t~tp~Ew~~   87 (105)
T PRK11628         76 ALHTYTIKEWEG   87 (105)
T ss_pred             eeecCCHHHHHH
Confidence            999999999984

>PF01722 BolA: BolA-like protein; InterPro: IPR002634 This family consist of the morpho-protein BolA from Escherichia coli and its various homologs

Probab=99.94  E-value=2.6e-27  Score=183.13  Aligned_cols=75  Identities=24%  Similarity=0.408  Sum_probs=68.9

Q ss_pred             HHHhcCCCceEEEEeCCCCCCCC-CCCCceEEEEEccccCCCCHhHHHHHHHHHHHHHHhcccccccccccceeecchHH
Q psy6791         203 YIAKHFSPTVLHVVDSKKMHPID-NDNPAFDVLIVSNHFNNLTITQRTMLMHDYLRDFINEGVQFRLHRTMLMHDYLRDF  281 (293)
Q Consensus       203 kL~~~l~p~~LeV~DeS~~H~~~-g~gsHF~ViIVS~~F~GlS~VqRHRlVy~~L~dei~~~IH~~~~~ALsIktyTpeE  281 (293)
                      ||+++|+|+.|+|+|+|++|++| ++|+||+|+|||+.|+|||+|+|||+||++|+++|+++||     ||+|+||||+|
T Consensus         1 Kl~~~l~~~~l~V~d~S~~H~~h~~g~sHf~i~IvS~~F~g~s~i~rhr~V~~~L~~~i~~~iH-----Alsi~t~tp~E   75 (76)
T PF01722_consen    1 KLKAALPPTHLEVEDESHKHAGHAGGGSHFKIIIVSDEFEGKSRIKRHRLVYKALKDEIKDGIH-----ALSIKTYTPEE   75 (76)
T ss_dssp             HHHHHHTTSEEEEEE-SSSSSS-CCSSSEEEEEEECGGGTTS-HHHHHHHHHHHTHHHHGCTCS-----EEEEEEE-HHH
T ss_pred             ChhHhCCCcEEEEEECcccccCCCCCCceEEEEEEcHHhCCCCHHHHHHHHHHHHHHHhcCCce-----EEEEEcCCccc
Confidence            68889999999999999999998 6799999999999999999999999999999999998999     99999999999


Q ss_pred             H
Q psy6791         282 I  282 (293)
Q Consensus       282 ~  282 (293)
                      |
T Consensus        76 w   76 (76)
T PF01722_consen   76 W   76 (76)
T ss_dssp             H
T ss_pred             C
Confidence            9

In E. coli, over-expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division []. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase []. BolA is also induced by stress during early stages of growth [] and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5 [, ].; PDB: 1XS3_A 1V60_A 3O2E_A 1NY8_A 3TR3_A 2KZ0_A 2DHM_A 2KDN_A 1V9J_A.

>PRK11628 transcriptional regulator BolA; Provisional

Probab=99.94  E-value=4.9e-27  Score=191.89  Aligned_cols=83  Identities=25%  Similarity=0.350  Sum_probs=76.7

Q ss_pred             HHHHHhhhhccceeecccceeeeeccccCCCCCC-CCCeEEEEEEccccCCCCHhHHHHHHHHHHHHHHhhccCCcccee
Q psy6791          75 KPIMRKLKAVNFTIEMNYEQIRFVEKYYMDHVDY-WPLCVKLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAIDI  153 (293)
Q Consensus        75 ~~I~~kL~~~~~~i~~~p~~l~v~neS~~h~v~~-~esHFkVvIVS~~F~G~s~lqRHRlVy~aL~dei~~~~~iHALsI  153 (293)
                      +.|+++|..     +|+|.+++|.|+|++|++++ +++||+|+|||+.|+|+++|+|||+||++|+++|+  +.+|||+|
T Consensus         5 ~~I~~~L~~-----~l~~~~l~V~d~S~~H~~~~g~~~Hf~v~IVS~~F~G~s~v~RHRlVy~~L~~~i~--~~IHALsi   77 (105)
T PRK11628          5 EQIEEKLRA-----AFQPVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELS--TTVHALAL   77 (105)
T ss_pred             HHHHHHHHh-----hCCCcEEEEEECcccccCCCCCCceEEEEEEChHhCCCCHHHHHHHHHHHHHHHHh--CCccceee
Confidence            556688888     89999999999999999875 68999999999999999999999999999999998  47999999


Q ss_pred             EEeChHHHHHh
Q psy6791         154 HADTPEEWNDF  164 (293)
Q Consensus       154 HA~TP~EW~~~  164 (293)
                      +||||+||++.
T Consensus        78 ~t~tp~Ew~~~   88 (105)
T PRK11628         78 HTYTIKEWEGL   88 (105)
T ss_pred             ecCCHHHHHHh
Confidence            99999999864

>COG0271 BolA Stress-induced morphogen (activity unknown) [Signal transduction mechanisms]

Probab=99.94  E-value=8.6e-27  Score=186.53  Aligned_cols=82  Identities=23%  Similarity=0.451  Sum_probs=79.0

Q ss_pred             HHHHHHHHhcCCCceEEEEeCCCCCCCC--CCCCceEEEEEccccCCCCHhHHHHHHHHHHHHHHhccccccccccccee
Q psy6791         198 DKIYNYIAKHFSPTVLHVVDSKKMHPID--NDNPAFDVLIVSNHFNNLTITQRTMLMHDYLRDFINEGVQFRLHRTMLMH  275 (293)
Q Consensus       198 e~Ik~kL~~~l~p~~LeV~DeS~~H~~~--g~gsHF~ViIVS~~F~GlS~VqRHRlVy~~L~dei~~~IH~~~~~ALsIk  275 (293)
                      ++|+++|+++|+|..++|+|+|++|+++  |||+||+|+|||+.|+|||+|+|||+||++|+|+|+++||     ||+|+
T Consensus         6 ~~Ie~~l~~~f~p~~l~i~deS~~h~~~~~g~~~Hf~i~IVS~~F~G~s~v~rHr~V~~~L~del~~~iH-----ALal~   80 (90)
T COG0271           6 ERIEKKLRAAFPPSFLEIIDESHRHHGHAGGGGSHFKVVIVSEAFQGKSLVARHRLVYSALKDELSGGIH-----ALALH   80 (90)
T ss_pred             HHHHHHHHhcCCCceEEEEecccccccCCCCCCCeEEEEEEchhhCCccHHHHHHHHHHHHHHHHhccce-----eeEeE
Confidence            5899999999999999999999999998  5999999999999999999999999999999999998999     99999


Q ss_pred             ecchHHHhc
Q psy6791         276 DYLRDFINE  284 (293)
Q Consensus       276 tyTpeE~~~  284 (293)
                      ||||+||..
T Consensus        81 t~t~~e~~~   89 (90)
T COG0271          81 TYTPEEWKG   89 (90)
T ss_pred             eeccchhcc
Confidence            999998863

>COG0271 BolA Stress-induced morphogen (activity unknown) [Signal transduction mechanisms]

Probab=99.94  E-value=1e-26  Score=186.10  Aligned_cols=82  Identities=32%  Similarity=0.408  Sum_probs=77.4

Q ss_pred             HHHHHhhhhccceeecccceeeeeccccCCCCC--CCCCeEEEEEEccccCCCCHhHHHHHHHHHHHHHHhhccCCccce
Q psy6791          75 KPIMRKLKAVNFTIEMNYEQIRFVEKYYMDHVD--YWPLCVKLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAID  152 (293)
Q Consensus        75 ~~I~~kL~~~~~~i~~~p~~l~v~neS~~h~v~--~~esHFkVvIVS~~F~G~s~lqRHRlVy~aL~dei~~~~~iHALs  152 (293)
                      .+|+.+|++     +|.|.+++|+|||++|+++  +||+||+|+|||+.|+|+|+|+|||+||++|+|+|.+  ++|||+
T Consensus         6 ~~Ie~~l~~-----~f~p~~l~i~deS~~h~~~~~g~~~Hf~i~IVS~~F~G~s~v~rHr~V~~~L~del~~--~iHALa   78 (90)
T COG0271           6 ERIEKKLRA-----AFPPSFLEIIDESHRHHGHAGGGGSHFKVVIVSEAFQGKSLVARHRLVYSALKDELSG--GIHALA   78 (90)
T ss_pred             HHHHHHHHh-----cCCCceEEEEecccccccCCCCCCCeEEEEEEchhhCCccHHHHHHHHHHHHHHHHhc--cceeeE
Confidence            489999999     9999999999999999998  5899999999999999999999999999999999993  599999


Q ss_pred             eEEeChHHHHH
Q psy6791         153 IHADTPEEWND  163 (293)
Q Consensus       153 IHA~TP~EW~~  163 (293)
                      |++|||+||..
T Consensus        79 l~t~t~~e~~~   89 (90)
T COG0271          79 LHTYTPEEWKG   89 (90)
T ss_pred             eEeeccchhcc
Confidence            99999999974

>PF01722 BolA: BolA-like protein; InterPro: IPR002634 This family consist of the morpho-protein BolA from Escherichia coli and its various homologs

Probab=99.92  E-value=4.3e-25  Score=170.73  Aligned_cols=75  Identities=32%  Similarity=0.402  Sum_probs=66.4

Q ss_pred             hhhhccceeecccceeeeeccccCCCCCC-CCCeEEEEEEccccCCCCHhHHHHHHHHHHHHHHhhccCCccceeEEeCh
Q psy6791          80 KLKAVNFTIEMNYEQIRFVEKYYMDHVDY-WPLCVKLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAIDIHADTP  158 (293)
Q Consensus        80 kL~~~~~~i~~~p~~l~v~neS~~h~v~~-~esHFkVvIVS~~F~G~s~lqRHRlVy~aL~dei~~~~~iHALsIHA~TP  158 (293)
                      ||++     +|+|.+++|.|+|++|.... +|+||+|+|||+.|+|+|+|+|||+||++|+++|++  ++|||+|+++||
T Consensus         1 Kl~~-----~l~~~~l~V~d~S~~H~~h~~g~sHf~i~IvS~~F~g~s~i~rhr~V~~~L~~~i~~--~iHAlsi~t~tp   73 (76)
T PF01722_consen    1 KLKA-----ALPPTHLEVEDESHKHAGHAGGGSHFKIIIVSDEFEGKSRIKRHRLVYKALKDEIKD--GIHALSIKTYTP   73 (76)
T ss_dssp             HHHH-----HHTTSEEEEEE-SSSSSS-CCSSSEEEEEEECGGGTTS-HHHHHHHHHHHTHHHHGC--TCSEEEEEEE-H
T ss_pred             ChhH-----hCCCcEEEEEECcccccCCCCCCceEEEEEEcHHhCCCCHHHHHHHHHHHHHHHhcC--CceEEEEEcCCc
Confidence            5666     88999999999999999866 589999999999999999999999999999999984  499999999999


Q ss_pred             HHH
Q psy6791         159 EEW  161 (293)
Q Consensus       159 ~EW  161 (293)
                      +||
T Consensus        74 ~Ew   76 (76)
T PF01722_consen   74 EEW   76 (76)
T ss_dssp             HHH
T ss_pred             ccC
Confidence            999

In E. coli, over-expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division []. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase []. BolA is also induced by stress during early stages of growth [] and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5 [, ].; PDB: 1XS3_A 1V60_A 3O2E_A 1NY8_A 3TR3_A 2KZ0_A 2DHM_A 2KDN_A 1V9J_A.

>KOG2313|consensus

Probab=99.88  E-value=3.9e-23  Score=167.99  Aligned_cols=84  Identities=18%  Similarity=0.279  Sum_probs=80.3

Q ss_pred             hhHHHHHHHHHHhcCCCceEEEEeCCCCCCCC----C---CCCceEEEEEccccCCCCHhHHHHHHHHHHHHHHhc-ccc
Q psy6791         194 VKLRDKIYNYIAKHFSPTVLHVVDSKKMHPID----N---DNPAFDVLIVSNHFNNLTITQRTMLMHDYLRDFINE-GVQ  265 (293)
Q Consensus       194 ~~~~e~Ik~kL~~~l~p~~LeV~DeS~~H~~~----g---~gsHF~ViIVS~~F~GlS~VqRHRlVy~~L~dei~~-~IH  265 (293)
                      +.++.+|+++|..+|.|..+++.|+|++|+||    |   +++||+|.|||+.|+|||+++||||||++|+|++.+ ++|
T Consensus         9 g~~~~ri~~~l~~~lkp~~le~~n~S~~hagH~~~kg~~~~EtHFrv~vVS~~FeG~s~v~RHRlVy~~L~eEl~~~gvH   88 (100)
T KOG2313|consen    9 GPRESRIREKLFEALKPLNLELYNESHQHAGHAVPKGMDGAETHFRVEVVSSAFEGLSLVKRHRLVYKALKEELAGTGVH   88 (100)
T ss_pred             CcHHHHHHHHhHhhcCcceEEEeeccccccccccccCCCCCccEEEEEEechhhCCccHHHHHHHHHHHHHHHhhcccee
Confidence            56788999999999999999999999998886    4   899999999999999999999999999999999999 799


Q ss_pred             cccccccceeecchHHH
Q psy6791         266 FRLHRTMLMHDYLRDFI  282 (293)
Q Consensus       266 ~~~~~ALsIktyTpeE~  282 (293)
                           ||+|.+.||+||
T Consensus        89 -----AL~i~aKTP~e~  100 (100)
T KOG2313|consen   89 -----ALSIMAKTPSEV  100 (100)
T ss_pred             -----EEEeeccCCCCC
Confidence                 999999999998

>KOG2313|consensus

Probab=99.86  E-value=3.1e-22  Score=162.74  Aligned_cols=81  Identities=23%  Similarity=0.271  Sum_probs=73.5

Q ss_pred             HHHHHhhhhccceeecccceeeeeccccC---CCCCC----CCCeEEEEEEccccCCCCHhHHHHHHHHHHHHHHhhccC
Q psy6791          75 KPIMRKLKAVNFTIEMNYEQIRFVEKYYM---DHVDY----WPLCVKLHIVSRLFQNKTKDERHAMVHEALRDEMLKREA  147 (293)
Q Consensus        75 ~~I~~kL~~~~~~i~~~p~~l~v~neS~~---h~v~~----~esHFkVvIVS~~F~G~s~lqRHRlVy~aL~dei~~~~~  147 (293)
                      .+|..||..     ++.|..|++.|+||.   |+++.    +|+||+|.|||++|+|+++++||||||++|+||++. .+
T Consensus        13 ~ri~~~l~~-----~lkp~~le~~n~S~~hagH~~~kg~~~~EtHFrv~vVS~~FeG~s~v~RHRlVy~~L~eEl~~-~g   86 (100)
T KOG2313|consen   13 SRIREKLFE-----ALKPLNLELYNESHQHAGHAVPKGMDGAETHFRVEVVSSAFEGLSLVKRHRLVYKALKEELAG-TG   86 (100)
T ss_pred             HHHHHHhHh-----hcCcceEEEeeccccccccccccCCCCCccEEEEEEechhhCCccHHHHHHHHHHHHHHHhhc-cc
Confidence            456688888     999999999999999   77764    489999999999999999999999999999999993 16


Q ss_pred             CccceeEEeChHHH
Q psy6791         148 GCAIDIHADTPEEW  161 (293)
Q Consensus       148 iHALsIHA~TP~EW  161 (293)
                      +|||+|-|.||+||
T Consensus        87 vHAL~i~aKTP~e~  100 (100)
T KOG2313|consen   87 VHALSIMAKTPSEV  100 (100)
T ss_pred             eeEEEeeccCCCCC
Confidence            89999999999999

>KOG3348|consensus

Probab=99.86  E-value=6.2e-22  Score=157.11  Aligned_cols=80  Identities=20%  Similarity=0.373  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHhcCCCceEEEEeCCCCCCCCCCCCceEEEEEccccCCCCHhHHHHHHHHHHHHHHhccccccccccccee
Q psy6791         196 LRDKIYNYIAKHFSPTVLHVVDSKKMHPIDNDNPAFDVLIVSNHFNNLTITQRTMLMHDYLRDFINEGVQFRLHRTMLMH  275 (293)
Q Consensus       196 ~~e~Ik~kL~~~l~p~~LeV~DeS~~H~~~g~gsHF~ViIVS~~F~GlS~VqRHRlVy~~L~dei~~~IH~~~~~ALsIk  275 (293)
                      -.+.|+++|++.|.|.+|+|+|.|.     |||+.|+|.|||+.|+|+|+|+|||+||++|+++|++ ||     ||+++
T Consensus         4 ~e~~l~~~L~~~l~p~~v~V~D~Sg-----GCG~~F~v~IvS~~FeGKs~L~rHRlVN~~L~Eeik~-iH-----alt~k   72 (85)
T KOG3348|consen    4 TEERLEELLTEALEPEHVEVQDVSG-----GCGSMFDVVIVSAAFEGKSLLARHRLVNSILAEEIKE-IH-----ALTIK   72 (85)
T ss_pred             hHHHHHHHHHhhcCceEEEEEEcCC-----CccceEEEEEEccccCChHHHHHHHHHHHHHHHHHHH-Hh-----hheee
Confidence            4788999999999999999999997     9999999999999999999999999999999999984 99     99999


Q ss_pred             ecchHHHhccc
Q psy6791         276 DYLRDFINEGV  286 (293)
Q Consensus       276 tyTpeE~~~~~  286 (293)
                      ||||++|....
T Consensus        73 t~t~~~w~~~~   83 (85)
T KOG3348|consen   73 TYTPEEWSKAS   83 (85)
T ss_pred             ecChhhhcccc
Confidence            99999998654

>COG5007 Predicted transcriptional regulator, BolA superfamily [Transcription]

Probab=99.86  E-value=7.8e-22  Score=154.97  Aligned_cols=75  Identities=17%  Similarity=0.321  Sum_probs=70.8

Q ss_pred             HHHHHHHHHhcCCCceEEEEeCCCCCCCCCCCCceEEEEEccccCCCCHhHHHHHHHHHHHHHHhc-cccccccccccee
Q psy6791         197 RDKIYNYIAKHFSPTVLHVVDSKKMHPIDNDNPAFDVLIVSNHFNNLTITQRTMLMHDYLRDFINE-GVQFRLHRTMLMH  275 (293)
Q Consensus       197 ~e~Ik~kL~~~l~p~~LeV~DeS~~H~~~g~gsHF~ViIVS~~F~GlS~VqRHRlVy~~L~dei~~-~IH~~~~~ALsIk  275 (293)
                      .++|+..|++.|+.++++|         .|+|+||.+++||+.|+|||+|+|||+||+.|.++|.+ .||     ||||+
T Consensus         3 ~e~Ik~ll~~~L~~e~v~V---------~Gdg~Hf~vi~Vs~~F~g~srvkrqq~vYApL~~~i~~~~IH-----Alsik   68 (80)
T COG5007           3 NEEIKSLLENALPLEEVEV---------EGDGSHFQVIAVSEEFAGKSRVKRQQLVYAPLMAYIADNEIH-----ALSIK   68 (80)
T ss_pred             HHHHHHHHHhcCCccEEEE---------ecCCceEEEEEehHhhcCccHHHHHHHHHHHHHHHhhcCceE-----EEEee
Confidence            5789999999999999999         47899999999999999999999999999999999995 899     99999


Q ss_pred             ecchHHHhcc
Q psy6791         276 DYLRDFINEG  285 (293)
Q Consensus       276 tyTpeE~~~~  285 (293)
                      +|||+||...
T Consensus        69 t~Tp~eW~~~   78 (80)
T COG5007          69 TYTPAEWARD   78 (80)
T ss_pred             ecCHHHhhhc
Confidence            9999999853

>COG5007 Predicted transcriptional regulator, BolA superfamily [Transcription]

Probab=99.83  E-value=1e-20  Score=148.74  Aligned_cols=79  Identities=23%  Similarity=0.243  Sum_probs=67.6

Q ss_pred             cChHHHHHHHHHHHHHhhhhccceeecccceeeeeccccCCCCCCCCCeEEEEEEccccCCCCHhHHHHHHHHHHHHHHh
Q psy6791          64 PTLEELRYVLKKPIMRKLKAVNFTIEMNYEQIRFVEKYYMDHVDYWPLCVKLHIVSRLFQNKTKDERHAMVHEALRDEML  143 (293)
Q Consensus        64 ~~~~~~~~~i~~~I~~kL~~~~~~i~~~p~~l~v~neS~~h~v~~~esHFkVvIVS~~F~G~s~lqRHRlVy~aL~dei~  143 (293)
                      |+.+||+    +-|+.+|.-..++                  |.+-|+||.+++||+.|+|+++|+|||+||+.|.+.|.
T Consensus         1 M~~e~Ik----~ll~~~L~~e~v~------------------V~Gdg~Hf~vi~Vs~~F~g~srvkrqq~vYApL~~~i~   58 (80)
T COG5007           1 MDNEEIK----SLLENALPLEEVE------------------VEGDGSHFQVIAVSEEFAGKSRVKRQQLVYAPLMAYIA   58 (80)
T ss_pred             CCHHHHH----HHHHhcCCccEEE------------------EecCCceEEEEEehHhhcCccHHHHHHHHHHHHHHHhh
Confidence            5778887    7777788663333                  33567899999999999999999999999999999999


Q ss_pred             hccCCccceeEEeChHHHHHhh
Q psy6791         144 KREAGCAIDIHADTPEEWNDFR  165 (293)
Q Consensus       144 ~~~~iHALsIHA~TP~EW~~~~  165 (293)
                      + +.||||+|.+|||+||++.+
T Consensus        59 ~-~~IHAlsikt~Tp~eW~~~~   79 (80)
T COG5007          59 D-NEIHALSIKTYTPAEWARDR   79 (80)
T ss_pred             c-CceEEEEeeecCHHHhhhcc
Confidence            7 58999999999999999764

>KOG3348|consensus

Probab=99.82  E-value=1.6e-20  Score=149.10  Aligned_cols=78  Identities=24%  Similarity=0.329  Sum_probs=71.3

Q ss_pred             HHHHHhhhhccceeecccceeeeeccccCCCCCCCCCeEEEEEEccccCCCCHhHHHHHHHHHHHHHHhhccCCccceeE
Q psy6791          75 KPIMRKLKAVNFTIEMNYEQIRFVEKYYMDHVDYWPLCVKLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAIDIH  154 (293)
Q Consensus        75 ~~I~~kL~~~~~~i~~~p~~l~v~neS~~h~v~~~esHFkVvIVS~~F~G~s~lqRHRlVy~aL~dei~~~~~iHALsIH  154 (293)
                      +.|+++|+.     ++.|.+++|.+.     +++||+.|.|+|||+.|+|+++|+|||+||++|+++|.   .+||+++.
T Consensus         6 ~~l~~~L~~-----~l~p~~v~V~D~-----SgGCG~~F~v~IvS~~FeGKs~L~rHRlVN~~L~Eeik---~iHalt~k   72 (85)
T KOG3348|consen    6 ERLEELLTE-----ALEPEHVEVQDV-----SGGCGSMFDVVIVSAAFEGKSLLARHRLVNSILAEEIK---EIHALTIK   72 (85)
T ss_pred             HHHHHHHHh-----hcCceEEEEEEc-----CCCccceEEEEEEccccCChHHHHHHHHHHHHHHHHHH---HHhhheee
Confidence            568888888     888999999877     56799999999999999999999999999999999998   48999999


Q ss_pred             EeChHHHHHhh
Q psy6791         155 ADTPEEWNDFR  165 (293)
Q Consensus       155 A~TP~EW~~~~  165 (293)
                      +|||++|.+..
T Consensus        73 t~t~~~w~~~~   83 (85)
T KOG3348|consen   73 TYTPEEWSKAS   83 (85)
T ss_pred             ecChhhhcccc
Confidence            99999998754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	293
1v60_A	123	BOLA1, riken cDNA 1810037G04; stationary phase mor	2e-08
1v60_A	123	BOLA1, riken cDNA 1810037G04; stationary phase mor	4e-06
2dhm_A	107	Protein BOLA; stationary-phase, stress-induced, mo	2e-08
2dhm_A	107	Protein BOLA; stationary-phase, stress-induced, mo	4e-06
2kdn_A	108	Putative uncharacterized protein PFE0790C; solutio	4e-08
3o2e_A	105	BOLA-like protein; ssgcid, iodide, SAD, seattle st	2e-07
1v9j_A	113	BOLA-like protein riken cDNA 1110025L05; stationar	2e-07
1v9j_A	113	BOLA-like protein riken cDNA 1110025L05; stationar	6e-05
3tr3_A	82	BOLA; cellular processes, stress-induced, unknown	6e-07
1ny8_A	97	Protein YRBA; structure, autoassign, autostructure	9e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1xs3_A	80	Hypothetical protein XC975; BOLA-like, structural	4e-05

>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 123

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 114 KLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGC-AIDIHADTPEEWN 162
           ++ +VS  F+  +  +RH +VHEAL +E+        A+ I A TP +W 
Sbjct: 64  RVAVVSSRFEGMSPLQRHRLVHEALSEEL---AGPVHALAIQAKTPAQWR 110

>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 123

 Score = 44.4 bits (105), Expect = 4e-06
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 196 LRDKIYNYIAKHFSPTVLHVVDSKKMHPI-DNDNPAFDVLIVSNHFNNLTITQRTMLMHD 254
           +   I   + +  SP VL + +    H +       F V +VS+ F  ++  QR  L+H+
Sbjct: 27  VEAAIRAKLEQALSPEVLELRNESGGHAVPAGSETHFRVAVVSSRFEGMSPLQRHRLVHE 86

Query: 255 YLRDFINEGV 264
            L + +   V
Sbjct: 87  ALSEELAGPV 96

>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural GEN NPPSFA; NMR {Escherichia coli str} Length = 107

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 114 KLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGC-AIDIHADTPEEWND 163
           K+ +VS  F  +    RH M++  L +E+        A+ +H  T +EW  
Sbjct: 47  KVVLVSDRFTGERFLNRHRMIYSTLAEEL---STTVHALALHTYTIKEWEG 94

>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural GEN NPPSFA; NMR {Escherichia coli str} Length = 107

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 196 LRDKIYNYIAKHFSPTVLHVVDSKKMHPI-DNDNPAFDVLIVSNHFNNLTITQRTMLMHD 254
           +R++I   +   F P  L VVD    H +       F V++VS+ F       R  +++ 
Sbjct: 10  IRERIEEKLRAAFQPVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRMIYS 69

Query: 255 YLRDFINEGV 264
            L + ++  V
Sbjct: 70  TLAEELSTTV 79

>2kdn_A Putative uncharacterized protein PFE0790C; solution structure, ssgcid, seattle structural genomics center for infectious disease; NMR {Plasmodium falciparum} Length = 108

 Score = 49.8 bits (119), Expect = 4e-08
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 114 KLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGC-AIDIHADTPEEWNDFRA 166
              IVS  F++K   +RH +V+  L++E+        A  +   TP E++  ++
Sbjct: 56  DAVIVSNNFEDKKLLDRHRLVNTILKEEL----QNIHAFSMKCHTPLEYDKLKS 105

>3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom center for infectious disease, BOL like protein, unknown FU; 1.95A {Babesia bovis} Length = 105

 Score = 47.5 bits (113), Expect = 2e-07
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 114 KLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAIDIHADTPEEW 161
             +IVS+ F+ K   +R  +V+ A+  EM +     A  +   TP EW
Sbjct: 55  NAYIVSQQFEGKGLLDRQRLVNSAIAAEMPQIH---AFTMKCLTPGEW 99

>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} SCOP: d.52.6.1 Length = 113

 Score = 47.5 bits (113), Expect = 2e-07
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 114 KLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGC-AIDIHADTPEEW 161
           ++ +VS  F+ K   +RH +V+E L +E+        A +    TPE+W
Sbjct: 63  RVLVVSAKFEGKPLLQRHRLVNECLAEEL----PHIHAFEQKTLTPEQW 107

>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} SCOP: d.52.6.1 Length = 113

 Score = 40.6 bits (95), Expect = 6e-05
 Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 198 DKIYNYIAKHFSPTVLHVVDSKKMHPIDNDNPAFDVLIVSNHFNNLTITQRTMLMHDYLR 257
           D +   + +      + V D+           +F VL+VS  F    + QR  L+++ L 
Sbjct: 33  DYLREKLRQDLEAEHVEVEDTTLNR----CATSFRVLVVSAKFEGKPLLQRHRLVNECLA 88

Query: 258 DFINE 262
           + +  
Sbjct: 89  EELPH 93

>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A {Coxiella burnetii} Length = 82

 Score = 45.8 bits (109), Expect = 6e-07
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 6/50 (12%)

Query: 114 KLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGC--AIDIHADTPEEW 161
           +  ++   F+ +T   RH +V+ AL   M         A+ +   TP+E+
Sbjct: 34  EAVVLCPTFEGQTALTRHRLVYNALGSHM----QSDIHALSLKTYTPDEY 79

>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.52.6.1 Length = 97

 Score = 45.5 bits (108), Expect = 9e-07
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 114 KLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAIDIHADTPEEWNDFRANNDF 170
           ++  V  LF   ++ ++   V+  L + +       A+ I A TP EW   R  N F
Sbjct: 34  QVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIH-AVSIKAYTPAEWARDRKLNGF 89

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 1e-05
 Identities = 44/244 (18%), Positives = 78/244 (31%), Gaps = 60/244 (24%)

Query: 39  FDEAELTTLFKDQSTLPDGDLVPYIPTLE----ELRYVLKKPIMRKLKAVNFTIEMNYEQ 94
            + AE   +F   S  P    +P    L     ++       ++ KL             
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIP-TILLSLIWFDVIKSDVMVVVNKL------------- 411

Query: 95  IRFVEKYYMDHVDYWPLCVKLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAIDI- 153
                KY +  V+  P    + I S   + K K E    +H ++ D     +   + D+ 
Sbjct: 412 ----HKYSL--VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465

Query: 154 --------------H---ADTPEEWNDFRAN-NDFDEISGKPDLRLRAAKT---TPVSVK 192
                         H    + PE    FR    DF  +  K    +R   T      S+ 
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK----IRHDSTAWNASGSIL 521

Query: 193 DVKLRDKIY-NYIAKHFSPTVLHVVDSKKMHPIDNDNPAFDVLIVSNHFNNLTITQRTML 251
           +   + K Y  YI  +  P    +V++     +D      + LI S + +   + +   L
Sbjct: 522 NTLQQLKFYKPYICDN-DPKYERLVNAI----LDFLPKIEENLICSKYTD---LLRIA-L 572

Query: 252 MHDY 255
           M + 
Sbjct: 573 MAED 576

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 29/252 (11%), Positives = 65/252 (25%), Gaps = 78/252 (30%)

Query: 38  GFDEAELTTLF-----KDQSTLPD-------------GDLV-PYIPTLEELRYVLKKPIM 78
                E+ +L           LP               + +   + T +  ++V    + 
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356

Query: 79  RKLKAVNFTIEMNYEQIRFVE--KYYMD------HVDYWPLCVKLHIVSRLFQNKTKDER 130
                    IE +   +   E  K +                +   ++S ++ +  K + 
Sbjct: 357 T-------IIESSLNVLEPAEYRKMFDRLSVFPPSAH-----IPTILLSLIWFDVIKSDV 404

Query: 131 HAMVHEALRDEMLKREAGCAIDIHADTPEEWNDFRANNDFDEISGKPDLRLRAAKTTPVS 190
             +V++  +  ++++                         +     P + L         
Sbjct: 405 MVVVNKLHKYSLVEK---------------QPK-------ESTISIPSIYLELKVKLE-- 440

Query: 191 VKDVKLRDKI---YNYIAKHFSPTVLHVVDSKKMHPIDNDNPAFDVLIVSNHFNNLTITQ 247
             +  L   I   YN              DS  + P   D   +  +   +H  N+   +
Sbjct: 441 -NEYALHRSIVDHYNIPKTF---------DSDDLIPPYLDQYFYSHI--GHHLKNIEHPE 488

Query: 248 RTMLMHDYLRDF 259
           R  L      DF
Sbjct: 489 RMTLFRMVFLDF 500

>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN integrated structural and functional genomic project, unknown function; NMR {Synthetic} Length = 80

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 114 KLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGC--AIDIHADTPEE 160
           +  +VS  F  K    RH MV+  L + M     G   A+ +   TP+E
Sbjct: 35  EATVVSPAFVGKAPLARHRMVYATLGELM----GGAIHALQLKTLTPDE 79

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	293
2dhm_A	107	Protein BOLA; stationary-phase, stress-induced, mo	99.96
2dhm_A	107	Protein BOLA; stationary-phase, stress-induced, mo	99.96
1v60_A	123	BOLA1, riken cDNA 1810037G04; stationary phase mor	99.95
1v60_A	123	BOLA1, riken cDNA 1810037G04; stationary phase mor	99.95
2kdn_A	108	Putative uncharacterized protein PFE0790C; solutio	99.93
2kdn_A	108	Putative uncharacterized protein PFE0790C; solutio	99.93
3tr3_A	82	BOLA; cellular processes, stress-induced, unknown	99.93
3o2e_A	105	BOLA-like protein; ssgcid, iodide, SAD, seattle st	99.93
3o2e_A	105	BOLA-like protein; ssgcid, iodide, SAD, seattle st	99.92
1ny8_A	97	Protein YRBA; structure, autoassign, autostructure	99.92
1v9j_A	113	BOLA-like protein riken cDNA 1110025L05; stationar	99.92
1v9j_A	113	BOLA-like protein riken cDNA 1110025L05; stationar	99.92
1xs3_A	80	Hypothetical protein XC975; BOLA-like, structural	99.91
1ny8_A	97	Protein YRBA; structure, autoassign, autostructure	99.91
3tr3_A	82	BOLA; cellular processes, stress-induced, unknown	99.91
1xs3_A	80	Hypothetical protein XC975; BOLA-like, structural	99.9
2kz0_A	76	BOLA family protein; BOLA protein family, human mo	99.89
2kz0_A	76	BOLA family protein; BOLA protein family, human mo	99.87

>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural GEN NPPSFA; NMR {Escherichia coli str}

Probab=99.96  E-value=9.2e-30  Score=207.36  Aligned_cols=87  Identities=22%  Similarity=0.380  Sum_probs=83.5

Q ss_pred             hhHHHHHHHHHHhcCCCceEEEEeCCCCCCCC-CCCCceEEEEEccccCCCCHhHHHHHHHHHHHHHHhccccccccccc
Q psy6791         194 VKLRDKIYNYIAKHFSPTVLHVVDSKKMHPID-NDNPAFDVLIVSNHFNNLTITQRTMLMHDYLRDFINEGVQFRLHRTM  272 (293)
Q Consensus       194 ~~~~e~Ik~kL~~~l~p~~LeV~DeS~~H~~~-g~gsHF~ViIVS~~F~GlS~VqRHRlVy~~L~dei~~~IH~~~~~AL  272 (293)
                      |++.++|+++|+++|+|+.|+|+|+|++|+++ |+|+||+|+|||+.|+||++|+|||+||++|+++|.++||     ||
T Consensus         8 m~~~~~I~~~L~~~l~p~~l~V~d~S~~H~~~~G~gsHf~v~IVS~~F~G~s~v~RHrlVy~~L~~ei~~~IH-----AL   82 (107)
T 2dhm_A            8 MMIRERIEEKLRAAFQPVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVH-----AL   82 (107)
T ss_dssp             CCHHHHHHHHHHHHTCCSCCEEEECCCCCSSCCCSCCCEEEEEECGGGSSCCSSHHHHHHHHHTHHHHHTTCC-----CC
T ss_pred             CCHHHHHHHHHHhcCCCcEEEEEECcccccCCCCCCceEEEEEEchhhCCCCHHHHHHHHHHHHHHHHcCCcc-----eE
Confidence            56789999999999999999999999999998 8899999999999999999999999999999999998899     99


Q ss_pred             ceeecchHHHhcc
Q psy6791         273 LMHDYLRDFINEG  285 (293)
Q Consensus       273 sIktyTpeE~~~~  285 (293)
                      +|+||||+||...
T Consensus        83 si~t~TP~Ew~~~   95 (107)
T 2dhm_A           83 ALHTYTIKEWEGL   95 (107)
T ss_dssp             EEEEECHHHHHTS
T ss_pred             EEEecCHHHHHhc
Confidence            9999999999863

>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural GEN NPPSFA; NMR {Escherichia coli str}

Probab=99.96  E-value=2.6e-29  Score=204.71  Aligned_cols=86  Identities=24%  Similarity=0.351  Sum_probs=79.3

Q ss_pred             HHHHHHhhhhccceeecccceeeeeccccCCCCCC-CCCeEEEEEEccccCCCCHhHHHHHHHHHHHHHHhhccCCccce
Q psy6791          74 KKPIMRKLKAVNFTIEMNYEQIRFVEKYYMDHVDY-WPLCVKLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAID  152 (293)
Q Consensus        74 ~~~I~~kL~~~~~~i~~~p~~l~v~neS~~h~v~~-~esHFkVvIVS~~F~G~s~lqRHRlVy~aL~dei~~~~~iHALs  152 (293)
                      ++.|++||++     +|+|.+|+|.|+|++|++++ +|+||+|+|||+.|+|+++|+|||+||++|+++|+  ++||||+
T Consensus        11 ~~~I~~~L~~-----~l~p~~l~V~d~S~~H~~~~G~gsHf~v~IVS~~F~G~s~v~RHrlVy~~L~~ei~--~~IHALs   83 (107)
T 2dhm_A           11 RERIEEKLRA-----AFQPVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELS--TTVHALA   83 (107)
T ss_dssp             HHHHHHHHHH-----HTCCSCCEEEECCCCCSSCCCSCCCEEEEEECGGGSSCCSSHHHHHHHHHTHHHHH--TTCCCCE
T ss_pred             HHHHHHHHHh-----cCCCcEEEEEECcccccCCCCCCceEEEEEEchhhCCCCHHHHHHHHHHHHHHHHc--CCcceEE
Confidence            3678899998     99999999999999999986 79999999999999999999999999999999998  4699999


Q ss_pred             eEEeChHHHHHhhc
Q psy6791         153 IHADTPEEWNDFRA  166 (293)
Q Consensus       153 IHA~TP~EW~~~~~  166 (293)
                      |++|||+||++.++
T Consensus        84 i~t~TP~Ew~~~~~   97 (107)
T 2dhm_A           84 LHTYTIKEWEGLQD   97 (107)
T ss_dssp             EEEECHHHHHTSSC
T ss_pred             EEecCHHHHHhccC
Confidence            99999999986443

>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=99.95  E-value=1.5e-28  Score=204.80  Aligned_cols=89  Identities=21%  Similarity=0.310  Sum_probs=84.7

Q ss_pred             hhHHHHHHHHHHhcCCCceEEEEeCCCCCCCC-CCCCceEEEEEccccCCCCHhHHHHHHHHHHHHHHhccccccccccc
Q psy6791         194 VKLRDKIYNYIAKHFSPTVLHVVDSKKMHPID-NDNPAFDVLIVSNHFNNLTITQRTMLMHDYLRDFINEGVQFRLHRTM  272 (293)
Q Consensus       194 ~~~~e~Ik~kL~~~l~p~~LeV~DeS~~H~~~-g~gsHF~ViIVS~~F~GlS~VqRHRlVy~~L~dei~~~IH~~~~~AL  272 (293)
                      ++++++|+++|+++|+|++|+|+|+|++|+++ |+|+||+|+|||+.|+||++|+|||+||++|+++|.++||     ||
T Consensus        25 ~~~~~~I~~~L~~~l~p~~l~V~DeS~~H~~~~G~gsHf~v~IVS~~F~Gks~v~RHRlVy~aL~~ei~~~IH-----AL   99 (123)
T 1v60_A           25 GPVEAAIRAKLEQALSPEVLELRNESGGHAVPAGSETHFRVAVVSSRFEGMSPLQRHRLVHEALSEELAGPVH-----AL   99 (123)
T ss_dssp             CHHHHHHHHHHHHHTCCSEEEEEECCCSSSCCTTCCSEEEEEEECGGGTTCCHHHHHHHHHHHTHHHHTTTCS-----EE
T ss_pred             CcHHHHHHHHHHhhCCCeEEEEEECcccccCCCCCCCeEEEEEEehhhCCCCHHHHHHHHHHHHHHHHcCCcc-----ee
Confidence            56899999999999999999999999999998 8999999999999999999999999999999999998899     99


Q ss_pred             ceeecchHHHhcccc
Q psy6791         273 LMHDYLRDFINEGVQ  287 (293)
Q Consensus       273 sIktyTpeE~~~~~q  287 (293)
                      +|+||||+||....+
T Consensus       100 si~t~TP~Ew~~~~~  114 (123)
T 1v60_A          100 AIQAKTPAQWRENPQ  114 (123)
T ss_dssp             EEEEECTTTTTTCCC
T ss_pred             EeEecCHHHHHhccC
Confidence            999999999986544

>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=99.95  E-value=8.9e-29  Score=206.12  Aligned_cols=86  Identities=26%  Similarity=0.367  Sum_probs=80.2

Q ss_pred             HHHHHHHhhhhccceeecccceeeeeccccCCCCCC-CCCeEEEEEEccccCCCCHhHHHHHHHHHHHHHHhhccCCccc
Q psy6791          73 LKKPIMRKLKAVNFTIEMNYEQIRFVEKYYMDHVDY-WPLCVKLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAI  151 (293)
Q Consensus        73 i~~~I~~kL~~~~~~i~~~p~~l~v~neS~~h~v~~-~esHFkVvIVS~~F~G~s~lqRHRlVy~aL~dei~~~~~iHAL  151 (293)
                      +++.|++||++     +|+|.+|+|+|+|++|+++. +|+||+|+|||++|+|+++|+|||+||++|+++|+  +.||||
T Consensus        27 ~~~~I~~~L~~-----~l~p~~l~V~DeS~~H~~~~G~gsHf~v~IVS~~F~Gks~v~RHRlVy~aL~~ei~--~~IHAL   99 (123)
T 1v60_A           27 VEAAIRAKLEQ-----ALSPEVLELRNESGGHAVPAGSETHFRVAVVSSRFEGMSPLQRHRLVHEALSEELA--GPVHAL   99 (123)
T ss_dssp             HHHHHHHHHHH-----HTCCSEEEEEECCCSSSCCTTCCSEEEEEEECGGGTTCCHHHHHHHHHHHTHHHHT--TTCSEE
T ss_pred             HHHHHHHHHHh-----hCCCeEEEEEECcccccCCCCCCCeEEEEEEehhhCCCCHHHHHHHHHHHHHHHHc--CCccee
Confidence            45889999999     99999999999999999986 78999999999999999999999999999999998  469999


Q ss_pred             eeEEeChHHHHHhh
Q psy6791         152 DIHADTPEEWNDFR  165 (293)
Q Consensus       152 sIHA~TP~EW~~~~  165 (293)
                      +|++|||+||++.+
T Consensus       100 si~t~TP~Ew~~~~  113 (123)
T 1v60_A          100 AIQAKTPAQWRENP  113 (123)
T ss_dssp             EEEEECTTTTTTCC
T ss_pred             EeEecCHHHHHhcc
Confidence            99999999998654

>2kdn_A Putative uncharacterized protein PFE0790C; solution structure, ssgcid, seattle structural genomics center for infectious disease; NMR {Plasmodium falciparum}

Probab=99.93  E-value=3.2e-26  Score=187.29  Aligned_cols=80  Identities=21%  Similarity=0.348  Sum_probs=76.6

Q ss_pred             hhHHHHHHHHHHhcCCCceEEEEeCCCCCCCCCCCCceEEEEEccccCCCCHhHHHHHHHHHHHHHHhcccccccccccc
Q psy6791         194 VKLRDKIYNYIAKHFSPTVLHVVDSKKMHPIDNDNPAFDVLIVSNHFNNLTITQRTMLMHDYLRDFINEGVQFRLHRTML  273 (293)
Q Consensus       194 ~~~~e~Ik~kL~~~l~p~~LeV~DeS~~H~~~g~gsHF~ViIVS~~F~GlS~VqRHRlVy~~L~dei~~~IH~~~~~ALs  273 (293)
                      |+..+.|+++|+++|+|+.|+|+|+|+     |||+||+|+|||+.|+||++|+|||+||++|+++|.. ||     ||+
T Consensus        23 Mm~~~~I~~~L~~~l~p~~l~V~DeS~-----G~gsHF~v~IVS~~F~Gks~v~RHRlVy~aL~~e~~~-IH-----ALs   91 (108)
T 2kdn_A           23 MCIQKVIEDKLSSALKPTFLELVDKSC-----GCGTSFDAVIVSNNFEDKKLLDRHRLVNTILKEELQN-IH-----AFS   91 (108)
T ss_dssp             CSHHHHHHHHHHHHHCCSEEEEEECCC-----SSSCCEEEEEECGGGTTCCHHHHHHHHHHHHHHHGGG-CS-----CEE
T ss_pred             CCcHHHHHHHHHhhCCCcEEEEEeCCC-----CCCceEEEEEEehhhCCCCHHHHHHHHHHHHHHHHhc-Cc-----eEE
Confidence            567899999999999999999999995     8899999999999999999999999999999999996 99     999


Q ss_pred             eeecchHHHhc
Q psy6791         274 MHDYLRDFINE  284 (293)
Q Consensus       274 IktyTpeE~~~  284 (293)
                      |+||||+||..
T Consensus        92 i~t~TP~Ew~~  102 (108)
T 2kdn_A           92 MKCHTPLEYDK  102 (108)
T ss_dssp             EEEECHHHHHH
T ss_pred             EEecChHHHHH
Confidence            99999999985

>2kdn_A Putative uncharacterized protein PFE0790C; solution structure, ssgcid, seattle structural genomics center for infectious disease; NMR {Plasmodium falciparum}

Probab=99.93  E-value=5.5e-26  Score=185.89  Aligned_cols=79  Identities=25%  Similarity=0.364  Sum_probs=72.8

Q ss_pred             HHHHHhhhhccceeecccceeeeeccccCCCCCCCCCeEEEEEEccccCCCCHhHHHHHHHHHHHHHHhhccCCccceeE
Q psy6791          75 KPIMRKLKAVNFTIEMNYEQIRFVEKYYMDHVDYWPLCVKLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAIDIH  154 (293)
Q Consensus        75 ~~I~~kL~~~~~~i~~~p~~l~v~neS~~h~v~~~esHFkVvIVS~~F~G~s~lqRHRlVy~aL~dei~~~~~iHALsIH  154 (293)
                      +.|++||++     +|+|.+|+|.|+|.     ++|+||+|+|||++|+|+++|+|||+||++|+++|+  . ||||+|+
T Consensus        27 ~~I~~~L~~-----~l~p~~l~V~DeS~-----G~gsHF~v~IVS~~F~Gks~v~RHRlVy~aL~~e~~--~-IHALsi~   93 (108)
T 2kdn_A           27 KVIEDKLSS-----ALKPTFLELVDKSC-----GCGTSFDAVIVSNNFEDKKLLDRHRLVNTILKEELQ--N-IHAFSMK   93 (108)
T ss_dssp             HHHHHHHHH-----HHCCSEEEEEECCC-----SSSCCEEEEEECGGGTTCCHHHHHHHHHHHHHHHGG--G-CSCEEEE
T ss_pred             HHHHHHHHh-----hCCCcEEEEEeCCC-----CCCceEEEEEEehhhCCCCHHHHHHHHHHHHHHHHh--c-CceEEEE
Confidence            667788888     89999999999993     689999999999999999999999999999999998  3 9999999


Q ss_pred             EeChHHHHHhhc
Q psy6791         155 ADTPEEWNDFRA  166 (293)
Q Consensus       155 A~TP~EW~~~~~  166 (293)
                      +|||+||++.++
T Consensus        94 t~TP~Ew~~~~~  105 (108)
T 2kdn_A           94 CHTPLEYDKLKS  105 (108)
T ss_dssp             EECHHHHHHHHH
T ss_pred             ecChHHHHHhhc
Confidence            999999997654

>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A {Coxiella burnetii}

Probab=99.93  E-value=2e-26  Score=179.83  Aligned_cols=79  Identities=16%  Similarity=0.318  Sum_probs=74.5

Q ss_pred             hhHHHHHHHHHHhcCCCceEEEEeCCCCCCCCCCCCceEEEEEccccCCCCHhHHHHHHHHHHHHHHhcccccccccccc
Q psy6791         194 VKLRDKIYNYIAKHFSPTVLHVVDSKKMHPIDNDNPAFDVLIVSNHFNNLTITQRTMLMHDYLRDFINEGVQFRLHRTML  273 (293)
Q Consensus       194 ~~~~e~Ik~kL~~~l~p~~LeV~DeS~~H~~~g~gsHF~ViIVS~~F~GlS~VqRHRlVy~~L~dei~~~IH~~~~~ALs  273 (293)
                      |+..++|+++|+++|+|+.|+|.+        |||+||+|+|||+.|+|||+|+|||+||++|+++|.++||     ||+
T Consensus         4 Mm~~~~I~~~L~~~l~~~~l~V~~--------g~gshf~v~IVS~~F~G~~~v~Rhr~V~~~L~~~~~~~iH-----AL~   70 (82)
T 3tr3_A            4 MVTTHDIKQWIETGLSESRVISAE--------GDGHHFEAVVLCPTFEGQTALTRHRLVYNALGSHMQSDIH-----ALS   70 (82)
T ss_dssp             CCCHHHHHHHHHHHSTTCEEEEEE--------ECSSEEEEEEECGGGTTCCHHHHHHHHHHHTGGGGTTTCS-----EEE
T ss_pred             cchHHHHHHHHHhhCCCcEEEEEc--------CCCCeEEEEEEchhhCCCCHHHHHHHHHHHHHHHHcCCcc-----eEE
Confidence            567899999999999999999984        6899999999999999999999999999999999987899     999


Q ss_pred             eeecchHHHhcc
Q psy6791         274 MHDYLRDFINEG  285 (293)
Q Consensus       274 IktyTpeE~~~~  285 (293)
                      |+||||+||..|
T Consensus        71 i~t~Tp~Ew~~~   82 (82)
T 3tr3_A           71 LKTYTPDEYERG   82 (82)
T ss_dssp             EEEECHHHHHC-
T ss_pred             EEeCCHHHHhcC
Confidence            999999999875

>3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom center for infectious disease, BOL like protein, unknown FU; 1.95A {Babesia bovis}

Probab=99.93  E-value=1.7e-26  Score=188.00  Aligned_cols=81  Identities=17%  Similarity=0.241  Sum_probs=77.0

Q ss_pred             hhHHHHHHHHHHhcCCCceEEEEeCCCCCCCCCCCCceEEEEEccccCCCCHhHHHHHHHHHHHHHHhcccccccccccc
Q psy6791         194 VKLRDKIYNYIAKHFSPTVLHVVDSKKMHPIDNDNPAFDVLIVSNHFNNLTITQRTMLMHDYLRDFINEGVQFRLHRTML  273 (293)
Q Consensus       194 ~~~~e~Ik~kL~~~l~p~~LeV~DeS~~H~~~g~gsHF~ViIVS~~F~GlS~VqRHRlVy~~L~dei~~~IH~~~~~ALs  273 (293)
                      |++.+.|+++|+++|+|+.|+|+|+|+     |||+||+|+|||+.|+|||+|+|||+||++|+++|. +||     ||+
T Consensus        22 M~~~~~I~~kL~~~l~p~~l~V~D~S~-----g~gsHf~v~IVS~~F~Gks~v~RHRlVy~aL~~ei~-~IH-----ALs   90 (105)
T 3o2e_A           22 MVSKSIVEERLRSMLSPQFLKVTDNSG-----GCGAAFNAYIVSQQFEGKGLLDRQRLVNSAIAAEMP-QIH-----AFT   90 (105)
T ss_dssp             CCCHHHHHHHHHHHHCCSEEEEEECCB-----TTBEEEEEEEECGGGTTCCHHHHHHHHHHHTTTTGG-GEE-----EEE
T ss_pred             CcHHHHHHHHHHhhCCCCEEEEEECCC-----CCCcEEEEEEEchHhCCCCHHHHHHHHHHHHHHHHh-cCc-----eeE
Confidence            567999999999999999999999995     899999999999999999999999999999999998 799     999


Q ss_pred             eeecchHHHhcc
Q psy6791         274 MHDYLRDFINEG  285 (293)
Q Consensus       274 IktyTpeE~~~~  285 (293)
                      |+||||+||+..
T Consensus        91 i~t~TP~Ew~~~  102 (105)
T 3o2e_A           91 MKCLTPGEWEAK  102 (105)
T ss_dssp             EEEECHHHHHHT
T ss_pred             EEeCCHHHHHHh
Confidence            999999999853

>3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom center for infectious disease, BOL like protein, unknown FU; 1.95A {Babesia bovis}

Probab=99.92  E-value=3.3e-26  Score=186.39  Aligned_cols=80  Identities=21%  Similarity=0.266  Sum_probs=73.3

Q ss_pred             HHHHHHHhhhhccceeecccceeeeeccccCCCCCCCCCeEEEEEEccccCCCCHhHHHHHHHHHHHHHHhhccCCccce
Q psy6791          73 LKKPIMRKLKAVNFTIEMNYEQIRFVEKYYMDHVDYWPLCVKLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAID  152 (293)
Q Consensus        73 i~~~I~~kL~~~~~~i~~~p~~l~v~neS~~h~v~~~esHFkVvIVS~~F~G~s~lqRHRlVy~aL~dei~~~~~iHALs  152 (293)
                      +++.|++||++     +|+|.+|+|.|+|.     ++|+||+|+|||+.|+|+++|+|||+||++|+++|+   .||||+
T Consensus        24 ~~~~I~~kL~~-----~l~p~~l~V~D~S~-----g~gsHf~v~IVS~~F~Gks~v~RHRlVy~aL~~ei~---~IHALs   90 (105)
T 3o2e_A           24 SKSIVEERLRS-----MLSPQFLKVTDNSG-----GCGAAFNAYIVSQQFEGKGLLDRQRLVNSAIAAEMP---QIHAFT   90 (105)
T ss_dssp             CHHHHHHHHHH-----HHCCSEEEEEECCB-----TTBEEEEEEEECGGGTTCCHHHHHHHHHHHTTTTGG---GEEEEE
T ss_pred             HHHHHHHHHHh-----hCCCCEEEEEECCC-----CCCcEEEEEEEchHhCCCCHHHHHHHHHHHHHHHHh---cCceeE
Confidence            34677899988     99999999999994     689999999999999999999999999999999998   499999


Q ss_pred             eEEeChHHHHHhh
Q psy6791         153 IHADTPEEWNDFR  165 (293)
Q Consensus       153 IHA~TP~EW~~~~  165 (293)
                      |++|||+||++++
T Consensus        91 i~t~TP~Ew~~~~  103 (105)
T 3o2e_A           91 MKCLTPGEWEAKN  103 (105)
T ss_dssp             EEEECHHHHHHTT
T ss_pred             EEeCCHHHHHHhh
Confidence            9999999999754

>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.52.6.1

Probab=99.92  E-value=7.2e-26  Score=181.89  Aligned_cols=84  Identities=21%  Similarity=0.249  Sum_probs=75.8

Q ss_pred             HHHHHhhhhccceeecccceeeeeccccCCCCCCCCCeEEEEEEccccCCCCHhHHHHHHHHHHHHHHhhccCCccceeE
Q psy6791          75 KPIMRKLKAVNFTIEMNYEQIRFVEKYYMDHVDYWPLCVKLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAIDIH  154 (293)
Q Consensus        75 ~~I~~kL~~~~~~i~~~p~~l~v~neS~~h~v~~~esHFkVvIVS~~F~G~s~lqRHRlVy~aL~dei~~~~~iHALsIH  154 (293)
                      +.|++||++     +|+|.+|+|.         ++|+||+|+|||++|+|+++|+|||+||++|+++|++ +.+|||+|+
T Consensus         9 ~~I~~~L~~-----~l~p~~l~V~---------G~gsHf~v~IVS~~F~Gks~v~RHRlVy~aL~~e~~~-~~IHALsi~   73 (97)
T 1ny8_A            9 NEIQSVLMN-----ALSLQEVHVS---------GDGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIAD-NRIHAVSIK   73 (97)
T ss_dssp             HHHHHHHHH-----HHCCSEEEEE---------ESSSEEEEEEESSTTSSSCHHHHHHHHHTTTHHHHHH-HTTSEEEEE
T ss_pred             HHHHHHHHh-----hCCCcEEEEE---------cCCceEEEEEEChhhCCCCHHHHHHHHHHHHHHHHcc-CCcceEEeE
Confidence            557788888     8889999987         5899999999999999999999999999999999984 369999999


Q ss_pred             EeChHHHHHhhcCCCCCcc
Q psy6791         155 ADTPEEWNDFRANNDFDEI  173 (293)
Q Consensus       155 A~TP~EW~~~~~~~~~~~~  173 (293)
                      ||||+||++.+..++|-|-
T Consensus        74 t~TP~Ew~~~~~~~~~~~~   92 (97)
T 1ny8_A           74 AYTPAEWARDRKLNGFLEH   92 (97)
T ss_dssp             ECCHHHHHHHHHTTSSSSC
T ss_pred             ecChHHHHhhhhhcchhhh
Confidence            9999999999998888653

>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} SCOP: d.52.6.1

Probab=99.92  E-value=5.7e-26  Score=187.00  Aligned_cols=97  Identities=24%  Similarity=0.352  Sum_probs=80.4

Q ss_pred             CCCCCCCccccccChHHHHHHHHHHHHHhhhhccceeecccceeeeeccccCCCCCCCCCeEEEEEEccccCCCCHhHHH
Q psy6791          52 STLPDGDLVPYIPTLEELRYVLKKPIMRKLKAVNFTIEMNYEQIRFVEKYYMDHVDYWPLCVKLHIVSRLFQNKTKDERH  131 (293)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~i~~~I~~kL~~~~~~i~~~p~~l~v~neS~~h~v~~~esHFkVvIVS~~F~G~s~lqRH  131 (293)
                      |.++-|..--+.|..      ..+.|++||++     +|+|.+|+|.|+|+    ++||+||+|+|||++|+|+++|+||
T Consensus        16 ~~~~~~~~~~~~M~m------~~~~I~~~L~~-----~l~p~~l~V~DeS~----~G~gsHF~v~IVS~~F~Gks~V~RH   80 (113)
T 1v9j_A           16 SLVPRGSEGAATMEL------SADYLREKLRQ-----DLEAEHVEVEDTTL----NRCATSFRVLVVSAKFEGKPLLQRH   80 (113)
T ss_dssp             CCCSSCCCCSSSSSS------CHHHHHHHHHH-----HHTCSEEEEEECCS----SSSCCCEEEEEECSHHHHSCHHHHH
T ss_pred             ceeeccCcccccccC------cHHHHHHHHHh-----hCCCcEEEEEeccC----CCCCceEEEEEEchhhCCCCHHHHH
Confidence            455555544333321      22567788888     89999999999995    4689999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccCCccceeEEeChHHHHHhhc
Q psy6791         132 AMVHEALRDEMLKREAGCAIDIHADTPEEWNDFRA  166 (293)
Q Consensus       132 RlVy~aL~dei~~~~~iHALsIHA~TP~EW~~~~~  166 (293)
                      |+||++|+++|+  . ||||+|++|||+||++.++
T Consensus        81 RlVy~aL~eei~--~-IHALsi~t~TP~Ew~~~~~  112 (113)
T 1v9j_A           81 RLVNECLAEELP--H-IHAFEQKTLTPEQWTRQRR  112 (113)
T ss_dssp             HHHHHHTTTTGG--G-CSSEEEEEECHHHHHHSCC
T ss_pred             HHHHHHHHHHHh--c-CceEEEEecChHHHHHhhc
Confidence            999999999998  3 9999999999999997654

>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} SCOP: d.52.6.1

Probab=99.92  E-value=8.6e-26  Score=185.95  Aligned_cols=81  Identities=16%  Similarity=0.246  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHhcCCCceEEEEeCCCCCCCCCCCCceEEEEEccccCCCCHhHHHHHHHHHHHHHHhccccccccccccee
Q psy6791         196 LRDKIYNYIAKHFSPTVLHVVDSKKMHPIDNDNPAFDVLIVSNHFNNLTITQRTMLMHDYLRDFINEGVQFRLHRTMLMH  275 (293)
Q Consensus       196 ~~e~Ik~kL~~~l~p~~LeV~DeS~~H~~~g~gsHF~ViIVS~~F~GlS~VqRHRlVy~~L~dei~~~IH~~~~~ALsIk  275 (293)
                      ..++|+++|+++|+|+.|+|+|+|+    .|||+||+|+|||+.|+||++|+|||+||++|+++|.. ||     ||+|+
T Consensus        31 ~~~~I~~~L~~~l~p~~l~V~DeS~----~G~gsHF~v~IVS~~F~Gks~V~RHRlVy~aL~eei~~-IH-----ALsi~  100 (113)
T 1v9j_A           31 SADYLREKLRQDLEAEHVEVEDTTL----NRCATSFRVLVVSAKFEGKPLLQRHRLVNECLAEELPH-IH-----AFEQK  100 (113)
T ss_dssp             CHHHHHHHHHHHHTCSEEEEEECCS----SSSCCCEEEEEECSHHHHSCHHHHHHHHHHHTTTTGGG-CS-----SEEEE
T ss_pred             cHHHHHHHHHhhCCCcEEEEEeccC----CCCCceEEEEEEchhhCCCCHHHHHHHHHHHHHHHHhc-Cc-----eEEEE
Confidence            6799999999999999999999994    37899999999999999999999999999999999996 99     99999


Q ss_pred             ecchHHHhccc
Q psy6791         276 DYLRDFINEGV  286 (293)
Q Consensus       276 tyTpeE~~~~~  286 (293)
                      ||||+||+...
T Consensus       101 t~TP~Ew~~~~  111 (113)
T 1v9j_A          101 TLTPEQWTRQR  111 (113)
T ss_dssp             EECHHHHHHSC
T ss_pred             ecChHHHHHhh
Confidence            99999998643

>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN integrated structural and functional genomic project, unknown function; NMR {Synthetic}

Probab=99.91  E-value=3.8e-25  Score=171.67  Aligned_cols=76  Identities=14%  Similarity=0.193  Sum_probs=71.8

Q ss_pred             hhHHHHHHHHHHhcCCCceEEEEeCCCCCCCCCCCCceEEEEEccccCCCCHhHHHHHHHHHHHHHHhcccccccccccc
Q psy6791         194 VKLRDKIYNYIAKHFSPTVLHVVDSKKMHPIDNDNPAFDVLIVSNHFNNLTITQRTMLMHDYLRDFINEGVQFRLHRTML  273 (293)
Q Consensus       194 ~~~~e~Ik~kL~~~l~p~~LeV~DeS~~H~~~g~gsHF~ViIVS~~F~GlS~VqRHRlVy~~L~dei~~~IH~~~~~ALs  273 (293)
                      |+..++|+++|+++|+|+.|+|.+        +||+||+|+|||+.|+|||+|+|||+||++|+++|.++||     ||+
T Consensus         5 mm~~~~I~~~L~~~l~~~~l~V~G--------~~gsHf~v~IVS~~F~G~~~v~RHrlVy~~L~~e~~~~iH-----ALs   71 (80)
T 1xs3_A            5 PLDAETIRKLIESGLPEARVDVQG--------EDGVHFEATVVSPAFVGKAPLARHRMVYATLGELMGGAIH-----ALQ   71 (80)
T ss_dssp             CCHHHHHHHHHHHHSSSCEEEEES--------CTTSCCEEEEECGGGCSSCCHHHHHHHHHHTTSTTTTCCS-----CCE
T ss_pred             cCCHHHHHHHHHhhCCCcEEEEEc--------CCCCEEEEEEEchhhCCCcHHHHHHHHHHHHHHHHcCCcc-----eEE
Confidence            557899999999999999999972        4899999999999999999999999999999999997899     999


Q ss_pred             eeecchHHH
Q psy6791         274 MHDYLRDFI  282 (293)
Q Consensus       274 IktyTpeE~  282 (293)
                      |+||||+||
T Consensus        72 i~t~Tp~E~   80 (80)
T 1xs3_A           72 LKTLTPDEA   80 (80)
T ss_dssp             EEEECGGGC
T ss_pred             EEecCCCCC
Confidence            999999997

>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.52.6.1

Probab=99.91  E-value=4.6e-25  Score=177.21  Aligned_cols=78  Identities=17%  Similarity=0.294  Sum_probs=72.8

Q ss_pred             chhHHHHHHHHHHhcCCCceEEEEeCCCCCCCCCCCCceEEEEEccccCCCCHhHHHHHHHHHHHHHHh-cccccccccc
Q psy6791         193 DVKLRDKIYNYIAKHFSPTVLHVVDSKKMHPIDNDNPAFDVLIVSNHFNNLTITQRTMLMHDYLRDFIN-EGVQFRLHRT  271 (293)
Q Consensus       193 ~~~~~e~Ik~kL~~~l~p~~LeV~DeS~~H~~~g~gsHF~ViIVS~~F~GlS~VqRHRlVy~~L~dei~-~~IH~~~~~A  271 (293)
                      +++..+.|+++|+++|+|+.|+|.         |||+||+|+|||+.|+|||+|+|||+||++|+++|. ++||     |
T Consensus         4 ~~m~~~~I~~~L~~~l~p~~l~V~---------G~gsHf~v~IVS~~F~Gks~v~RHRlVy~aL~~e~~~~~IH-----A   69 (97)
T 1ny8_A            4 DPMENNEIQSVLMNALSLQEVHVS---------GDGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIH-----A   69 (97)
T ss_dssp             CCCCCHHHHHHHHHHHCCSEEEEE---------ESSSEEEEEEESSTTSSSCHHHHHHHHHTTTHHHHHHHTTS-----E
T ss_pred             cccCHHHHHHHHHhhCCCcEEEEE---------cCCceEEEEEEChhhCCCCHHHHHHHHHHHHHHHHccCCcc-----e
Confidence            445678999999999999999996         689999999999999999999999999999999999 4799     9


Q ss_pred             cceeecchHHHhc
Q psy6791         272 MLMHDYLRDFINE  284 (293)
Q Consensus       272 LsIktyTpeE~~~  284 (293)
                      |+|+||||+||+.
T Consensus        70 Lsi~t~TP~Ew~~   82 (97)
T 1ny8_A           70 VSIKAYTPAEWAR   82 (97)
T ss_dssp             EEEEECCHHHHHH
T ss_pred             EEeEecChHHHHh
Confidence            9999999999984

>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A {Coxiella burnetii}

Probab=99.91  E-value=5.7e-25  Score=171.68  Aligned_cols=74  Identities=18%  Similarity=0.224  Sum_probs=66.5

Q ss_pred             HHHHHhhhhccceeecccceeeeeccccCCCCCCCCCeEEEEEEccccCCCCHhHHHHHHHHHHHHHHhhccCCccceeE
Q psy6791          75 KPIMRKLKAVNFTIEMNYEQIRFVEKYYMDHVDYWPLCVKLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAIDIH  154 (293)
Q Consensus        75 ~~I~~kL~~~~~~i~~~p~~l~v~neS~~h~v~~~esHFkVvIVS~~F~G~s~lqRHRlVy~aL~dei~~~~~iHALsIH  154 (293)
                      +.|++||++     +|+|.+++|.        +++|+||+|+|||+.|+|+++|+|||+||++|+++|+  +.+|||+|+
T Consensus         8 ~~I~~~L~~-----~l~~~~l~V~--------~g~gshf~v~IVS~~F~G~~~v~Rhr~V~~~L~~~~~--~~iHAL~i~   72 (82)
T 3tr3_A            8 HDIKQWIET-----GLSESRVISA--------EGDGHHFEAVVLCPTFEGQTALTRHRLVYNALGSHMQ--SDIHALSLK   72 (82)
T ss_dssp             HHHHHHHHH-----HSTTCEEEEE--------EECSSEEEEEEECGGGTTCCHHHHHHHHHHHTGGGGT--TTCSEEEEE
T ss_pred             HHHHHHHHh-----hCCCcEEEEE--------cCCCCeEEEEEEchhhCCCCHHHHHHHHHHHHHHHHc--CCcceEEEE
Confidence            456678877     8888899987        3689999999999999999999999999999999996  579999999


Q ss_pred             EeChHHHHH
Q psy6791         155 ADTPEEWND  163 (293)
Q Consensus       155 A~TP~EW~~  163 (293)
                      +|||+||++
T Consensus        73 t~Tp~Ew~~   81 (82)
T 3tr3_A           73 TYTPDEYER   81 (82)
T ss_dssp             EECHHHHHC
T ss_pred             eCCHHHHhc
Confidence            999999974

>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN integrated structural and functional genomic project, unknown function; NMR {Synthetic}

Probab=99.90  E-value=6.8e-25  Score=170.27  Aligned_cols=73  Identities=22%  Similarity=0.214  Sum_probs=67.3

Q ss_pred             HHHHHHhhhhccceeecccceeeeeccccCCCCCCCCCeEEEEEEccccCCCCHhHHHHHHHHHHHHHHhhccCCcccee
Q psy6791          74 KKPIMRKLKAVNFTIEMNYEQIRFVEKYYMDHVDYWPLCVKLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAIDI  153 (293)
Q Consensus        74 ~~~I~~kL~~~~~~i~~~p~~l~v~neS~~h~v~~~esHFkVvIVS~~F~G~s~lqRHRlVy~aL~dei~~~~~iHALsI  153 (293)
                      .+.|++||++     +|+|.+++|.        |++|+||+|+|||++|+|+++|+|||+||++|+++|+  +.+|||+|
T Consensus         8 ~~~I~~~L~~-----~l~~~~l~V~--------G~~gsHf~v~IVS~~F~G~~~v~RHrlVy~~L~~e~~--~~iHALsi   72 (80)
T 1xs3_A            8 AETIRKLIES-----GLPEARVDVQ--------GEDGVHFEATVVSPAFVGKAPLARHRMVYATLGELMG--GAIHALQL   72 (80)
T ss_dssp             HHHHHHHHHH-----HSSSCEEEEE--------SCTTSCCEEEEECGGGCSSCCHHHHHHHHHHTTSTTT--TCCSCCEE
T ss_pred             HHHHHHHHHh-----hCCCcEEEEE--------cCCCCEEEEEEEchhhCCCcHHHHHHHHHHHHHHHHc--CCcceEEE
Confidence            3678889988     8999999998        3489999999999999999999999999999999998  47999999


Q ss_pred             EEeChHHH
Q psy6791         154 HADTPEEW  161 (293)
Q Consensus       154 HA~TP~EW  161 (293)
                      ++|||+||
T Consensus        73 ~t~Tp~E~   80 (80)
T 1xs3_A           73 KTLTPDEA   80 (80)
T ss_dssp             EEECGGGC
T ss_pred             EecCCCCC
Confidence            99999998

>2kz0_A BOLA family protein; BOLA protein family, human monocytotropic ehrlichiosis, STRE response, structural genomics; NMR {Ehrlichia chaffeensis}

Probab=99.89  E-value=5.5e-24  Score=164.06  Aligned_cols=70  Identities=11%  Similarity=0.268  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHhcCCCceEEEEeCCCCCCCCCCCCceEEEEEccccCCCCHhHHHHHHHHHHHHHHhccccccccccccee
Q psy6791         196 LRDKIYNYIAKHFSPTVLHVVDSKKMHPIDNDNPAFDVLIVSNHFNNLTITQRTMLMHDYLRDFINEGVQFRLHRTMLMH  275 (293)
Q Consensus       196 ~~e~Ik~kL~~~l~p~~LeV~DeS~~H~~~g~gsHF~ViIVS~~F~GlS~VqRHRlVy~~L~dei~~~IH~~~~~ALsIk  275 (293)
                      ..++|+++|+++|+|+.|+|.|+|      |||+||+|+|||+.|+|||+|+|||+||++|+++   +||     ||+|+
T Consensus         7 ~~~~I~~~L~~~l~~~~l~V~d~S------G~g~Hf~v~IVS~~F~G~s~v~rHr~Vy~~L~~e---~iH-----ALsi~   72 (76)
T 2kz0_A            7 TQSQLELLIRNAFPEAEITVTSLV------GDNNHYSIKVISSQFQGKSKLEQHRMIYKVLDGL---NIH-----AIQIQ   72 (76)
T ss_dssp             TTHHHHHHHHHHCTTEEEEEECCS------STTSCCEEEEEEGGGTTCCHHHHHHHHHHHTTTS---CCC-----SSSEE
T ss_pred             cHHHHHHHHHhhCCCcEEEEEECC------CCccEEEEEEEchHhCCCCHHHHHHHHHHHhccC---Cce-----EEEEE
Confidence            568999999999999999999999      7899999999999999999999999999999999   799     99999


Q ss_pred             ecch
Q psy6791         276 DYLR  279 (293)
Q Consensus       276 tyTp  279 (293)
                      ||||
T Consensus        73 t~tp   76 (76)
T 2kz0_A           73 TGCK   76 (76)
T ss_dssp             ECCC
T ss_pred             EeCC
Confidence            9997

>2kz0_A BOLA family protein; BOLA protein family, human monocytotropic ehrlichiosis, STRE response, structural genomics; NMR {Ehrlichia chaffeensis}

Probab=99.87  E-value=2.9e-23  Score=160.01  Aligned_cols=68  Identities=19%  Similarity=0.173  Sum_probs=63.6

Q ss_pred             HHHHHhhhhccceeecccceeeeeccccCCCCCCCCCeEEEEEEccccCCCCHhHHHHHHHHHHHHHHhhccCCccceeE
Q psy6791          75 KPIMRKLKAVNFTIEMNYEQIRFVEKYYMDHVDYWPLCVKLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAIDIH  154 (293)
Q Consensus        75 ~~I~~kL~~~~~~i~~~p~~l~v~neS~~h~v~~~esHFkVvIVS~~F~G~s~lqRHRlVy~aL~dei~~~~~iHALsIH  154 (293)
                      +.|++||++     +|+|.+++|.|+|      ++|+||+|+|||++|+|+++|+|||+||++|+++     .+|||+|+
T Consensus         9 ~~I~~~L~~-----~l~~~~l~V~d~S------G~g~Hf~v~IVS~~F~G~s~v~rHr~Vy~~L~~e-----~iHALsi~   72 (76)
T 2kz0_A            9 SQLELLIRN-----AFPEAEITVTSLV------GDNNHYSIKVISSQFQGKSKLEQHRMIYKVLDGL-----NIHAIQIQ   72 (76)
T ss_dssp             HHHHHHHHH-----HCTTEEEEEECCS------STTSCCEEEEEEGGGTTCCHHHHHHHHHHHTTTS-----CCCSSSEE
T ss_pred             HHHHHHHHh-----hCCCcEEEEEECC------CCccEEEEEEEchHhCCCCHHHHHHHHHHHhccC-----CceEEEEE
Confidence            567788888     8999999999999      5899999999999999999999999999999999     39999999


Q ss_pred             EeCh
Q psy6791         155 ADTP  158 (293)
Q Consensus       155 A~TP  158 (293)
                      ||||
T Consensus        73 t~tp   76 (76)
T 2kz0_A           73 TGCK   76 (76)
T ss_dssp             ECCC
T ss_pred             EeCC
Confidence            9997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	293
d1ny8a_	97	d.52.6.1 (A:) Hypothetical protein YrbA {Escherich	4e-08
d1ny8a_	97	d.52.6.1 (A:) Hypothetical protein YrbA {Escherich	2e-04
d1v9ja_	113	d.52.6.1 (A:) BolA-like protein {Mouse (Mus muscul	6e-06
d1v9ja_	113	d.52.6.1 (A:) BolA-like protein {Mouse (Mus muscul	4e-05

>d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli [TaxId: 562]} Length = 97

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: Hypothetical protein YrbA
species: Escherichia coli [TaxId: 562]

 Score = 47.9 bits (114), Expect = 4e-08
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 114 KLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAIDIHADTPEEWNDFRANNDF 170
           ++  V  LF   ++ ++   V+  L + +       A+ I A TP EW   R  N F
Sbjct: 34  QVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIH-AVSIKAYTPAEWARDRKLNGF 89

>d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli [TaxId: 562]} Length = 97

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: Hypothetical protein YrbA
species: Escherichia coli [TaxId: 562]

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 9/66 (13%)

Query: 198 DKIYNYIAKHFSPTVLHVVDSKKMHPIDNDNPAFDVLIVSNHFNNLTITQRTMLMHDYLR 257
           ++I + +    S   +HV           D   F V+ V   F+ ++  ++   ++  L 
Sbjct: 9   NEIQSVLMNALSLQEVHV---------SGDGSHFQVIAVGELFDGMSRVKKQQTVYGPLM 59

Query: 258 DFINEG 263
           ++I + 
Sbjct: 60  EYIADN 65

>d1v9ja_ d.52.6.1 (A:) BolA-like protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 113

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: BolA-like protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.2 bits (99), Expect = 6e-06
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 114 KLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAIDIHADTPEEW 161
           ++ +VS  F+ K   +RH +V+E L +E+       A +    TPE+W
Sbjct: 63  RVLVVSAKFEGKPLLQRHRLVNECLAEELPHIH---AFEQKTLTPEQW 107

>d1v9ja_ d.52.6.1 (A:) BolA-like protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 113

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: BolA-like protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.9 bits (93), Expect = 4e-05
 Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 198 DKIYNYIAKHFSPTVLHVVDSKKMHPIDNDNPAFDVLIVSNHFNNLTITQRTMLMHDYLR 257
           D +   + +      + V D+           +F VL+VS  F    + QR  L+++ L 
Sbjct: 33  DYLREKLRQDLEAEHVEVEDTTLNR----CATSFRVLVVSAKFEGKPLLQRHRLVNECLA 88

Query: 258 DFINE 262
           + +  
Sbjct: 89  EELPH 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	293
d1v9ja_	113	BolA-like protein {Mouse (Mus musculus) [TaxId: 10	99.9
d1v9ja_	113	BolA-like protein {Mouse (Mus musculus) [TaxId: 10	99.89
d1ny8a_	97	Hypothetical protein YrbA {Escherichia coli [TaxId	99.87
d1ny8a_	97	Hypothetical protein YrbA {Escherichia coli [TaxId	99.86
d1ylqa1	90	Putative nucleotidyltransferase AF0614 {Archaeon A	94.67
d1ylqa1	90	Putative nucleotidyltransferase AF0614 {Archaeon A	93.89

>d1v9ja_ d.52.6.1 (A:) BolA-like protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: BolA-like protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=7.1e-25  Score=178.49  Aligned_cols=80  Identities=24%  Similarity=0.378  Sum_probs=73.5

Q ss_pred             HHHHHhhhhccceeecccceeeeeccccCCCCCCCCCeEEEEEEccccCCCCHhHHHHHHHHHHHHHHhhccCCccceeE
Q psy6791          75 KPIMRKLKAVNFTIEMNYEQIRFVEKYYMDHVDYWPLCVKLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAIDIH  154 (293)
Q Consensus        75 ~~I~~kL~~~~~~i~~~p~~l~v~neS~~h~v~~~esHFkVvIVS~~F~G~s~lqRHRlVy~aL~dei~~~~~iHALsIH  154 (293)
                      +.|++||.+     +|+|.+|+|+|+|++|    +|+||+|+|||+.|.|+++|+|||+||++|+++|+   .+|||+|+
T Consensus        33 e~I~~kL~~-----~~~~~~leV~D~S~~h----~G~Hf~i~IvS~~F~g~s~v~rHr~Vy~~L~~ei~---~iHAlsi~  100 (113)
T d1v9ja_          33 DYLREKLRQ-----DLEAEHVEVEDTTLNR----CATSFRVLVVSAKFEGKPLLQRHRLVNECLAEELP---HIHAFEQK  100 (113)
T ss_dssp             HHHHHHHHH-----HHTCSEEEEEECCSSS----SCCCEEEEEECSHHHHSCHHHHHHHHHHHTTTTGG---GCSSEEEE
T ss_pred             HHHHHHHHh-----hCCCcEEEEEecCCCC----CCceEEEEEEeccccCCchhHHHHhHHHHHHHHHh---cceeeEEE
Confidence            456788888     9999999999999887    57899999999999999999999999999999996   39999999


Q ss_pred             EeChHHHHHhhc
Q psy6791         155 ADTPEEWNDFRA  166 (293)
Q Consensus       155 A~TP~EW~~~~~  166 (293)
                      ||||+||++.+.
T Consensus       101 t~Tp~Ew~~~~~  112 (113)
T d1v9ja_         101 TLTPEQWTRQRR  112 (113)
T ss_dssp             EECHHHHHHSCC
T ss_pred             eCCHHHHHHhhc
Confidence            999999998664

>d1v9ja_ d.52.6.1 (A:) BolA-like protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: BolA-like protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=2.9e-24  Score=174.89  Aligned_cols=80  Identities=16%  Similarity=0.233  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHhcCCCceEEEEeCCCCCCCCCCCCceEEEEEccccCCCCHhHHHHHHHHHHHHHHhccccccccccccee
Q psy6791         196 LRDKIYNYIAKHFSPTVLHVVDSKKMHPIDNDNPAFDVLIVSNHFNNLTITQRTMLMHDYLRDFINEGVQFRLHRTMLMH  275 (293)
Q Consensus       196 ~~e~Ik~kL~~~l~p~~LeV~DeS~~H~~~g~gsHF~ViIVS~~F~GlS~VqRHRlVy~~L~dei~~~IH~~~~~ALsIk  275 (293)
                      .++.|+++|+++|+|+.|+|+|+|++|    +|+||+|+|||+.|+||++|+|||+||++|+++|+ +||     ||+|+
T Consensus        31 ~~e~I~~kL~~~~~~~~leV~D~S~~h----~G~Hf~i~IvS~~F~g~s~v~rHr~Vy~~L~~ei~-~iH-----Alsi~  100 (113)
T d1v9ja_          31 SADYLREKLRQDLEAEHVEVEDTTLNR----CATSFRVLVVSAKFEGKPLLQRHRLVNECLAEELP-HIH-----AFEQK  100 (113)
T ss_dssp             CHHHHHHHHHHHHTCSEEEEEECCSSS----SCCCEEEEEECSHHHHSCHHHHHHHHHHHTTTTGG-GCS-----SEEEE
T ss_pred             cHHHHHHHHHhhCCCcEEEEEecCCCC----CCceEEEEEEeccccCCchhHHHHhHHHHHHHHHh-cce-----eeEEE
Confidence            378999999999999999999999876    47899999999999999999999999999999997 599     99999


Q ss_pred             ecchHHHhcc
Q psy6791         276 DYLRDFINEG  285 (293)
Q Consensus       276 tyTpeE~~~~  285 (293)
                      ||||+||...
T Consensus       101 t~Tp~Ew~~~  110 (113)
T d1v9ja_         101 TLTPEQWTRQ  110 (113)
T ss_dssp             EECHHHHHHS
T ss_pred             eCCHHHHHHh
Confidence            9999999854

>d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: Hypothetical protein YrbA
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=3.4e-23  Score=164.36  Aligned_cols=76  Identities=16%  Similarity=0.303  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHhcCCCceEEEEeCCCCCCCCCCCCceEEEEEccccCCCCHhHHHHHHHHHHHHHHhc-ccccccccccce
Q psy6791         196 LRDKIYNYIAKHFSPTVLHVVDSKKMHPIDNDNPAFDVLIVSNHFNNLTITQRTMLMHDYLRDFINE-GVQFRLHRTMLM  274 (293)
Q Consensus       196 ~~e~Ik~kL~~~l~p~~LeV~DeS~~H~~~g~gsHF~ViIVS~~F~GlS~VqRHRlVy~~L~dei~~-~IH~~~~~ALsI  274 (293)
                      ..++|+++|.++|+++.|+|.         |+|+||+|+|||+.|+|||+|+|||+||++|+++|.+ .||     ||+|
T Consensus         7 ~~~eI~~~L~~~l~~~~v~V~---------g~g~hf~i~IvS~~F~g~s~v~RHr~Vy~~L~~~i~~g~IH-----Alsi   72 (97)
T d1ny8a_           7 ENNEIQSVLMNALSLQEVHVS---------GDGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIH-----AVSI   72 (97)
T ss_dssp             CCHHHHHHHHHHHCCSEEEEE---------ESSSEEEEEEESSTTSSSCHHHHHHHHHTTTHHHHHHHTTS-----EEEE
T ss_pred             CHHHHHHHHHhhCCCcEEEEe---------CCCcEEEEEEEcHHhCCCCHHHHHHHHHHHHHHHHcCCCce-----eeEe
Confidence            357899999999999999994         4689999999999999999999999999999999986 699     9999


Q ss_pred             eecchHHHhcc
Q psy6791         275 HDYLRDFINEG  285 (293)
Q Consensus       275 ktyTpeE~~~~  285 (293)
                      +|+||+||+..
T Consensus        73 kt~Tp~Ew~~~   83 (97)
T d1ny8a_          73 KAYTPAEWARD   83 (97)
T ss_dssp             EECCHHHHHHH
T ss_pred             EeCCHHHHHHh
Confidence            99999999843

>d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: Hypothetical protein YrbA
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=1.9e-22  Score=160.06  Aligned_cols=64  Identities=25%  Similarity=0.267  Sum_probs=58.6

Q ss_pred             CCCCeEEEEEEccccCCCCHhHHHHHHHHHHHHHHhhccCCccceeEEeChHHHHHhhcCCCCCc
Q psy6791         108 YWPLCVKLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAIDIHADTPEEWNDFRANNDFDE  172 (293)
Q Consensus       108 ~~esHFkVvIVS~~F~G~s~lqRHRlVy~aL~dei~~~~~iHALsIHA~TP~EW~~~~~~~~~~~  172 (293)
                      ++|+||+|+|||+.|+|+++|+|||+||++|+++|++ +.+|||+|.|+||+||++.++.+.|-+
T Consensus        28 g~g~hf~i~IvS~~F~g~s~v~RHr~Vy~~L~~~i~~-g~IHAlsikt~Tp~Ew~~~kk~~~~~~   91 (97)
T d1ny8a_          28 GDGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIAD-NRIHAVSIKAYTPAEWARDRKLNGFLE   91 (97)
T ss_dssp             ESSSEEEEEEESSTTSSSCHHHHHHHHHTTTHHHHHH-HTTSEEEEEECCHHHHHHHHHTTSSSS
T ss_pred             CCCcEEEEEEEcHHhCCCCHHHHHHHHHHHHHHHHcC-CCceeeEeEeCCHHHHHHhhhhhhHHH
Confidence            3588999999999999999999999999999999985 369999999999999999888887743

>d1ylqa1 d.218.1.5 (A:1-90) Putative nucleotidyltransferase AF0614 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Catalytic subunit of bi-partite nucleotidyltransferase
domain: Putative nucleotidyltransferase AF0614
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.67  E-value=0.035  Score=41.42  Aligned_cols=75  Identities=16%  Similarity=0.177  Sum_probs=56.4

Q ss_pred             HHHHHHHHhcCCCceEEEEeCCCCCCCC-C-CCCceEEEEEccccCCCCHhHHHHHHHHHHHHHHhccccccccccccee
Q psy6791         198 DKIYNYIAKHFSPTVLHVVDSKKMHPID-N-DNPAFDVLIVSNHFNNLTITQRTMLMHDYLRDFINEGVQFRLHRTMLMH  275 (293)
Q Consensus       198 e~Ik~kL~~~l~p~~LeV~DeS~~H~~~-g-~gsHF~ViIVS~~F~GlS~VqRHRlVy~~L~dei~~~IH~~~~~ALsIk  275 (293)
                      +.|++.+++.++++.|-+.-+-.  .|. . .+|-.+|.||++.+.  +..+|.+.+...+.....   +     -+.++
T Consensus         2 ~~i~e~ik~~~~~~kViLFGS~A--rG~~~~~~SDiDllVV~~~~~--~~~~r~~~~~~~~~~~~~---~-----pvd~~   69 (90)
T d1ylqa1           2 KEIKEITKKDVQDAEIYLYGSVV--EGDYSIGLSDIDVAIVSDVFE--DRNRKLEFFGKITKKFFD---S-----PFEFH   69 (90)
T ss_dssp             HHHHHHHHHHCTTCEEEEESHHH--HCCSSSCCCSEEEEEECGGGG--SHHHHHHHHHHHHHHTTT---C-----SEEEE
T ss_pred             HHHHHHHHHHCCCcEEEEECccc--cCCCCCCCCccEEEEEeCCCC--CHHHHHHHHHHHHhhccC---C-----CeEEE
Confidence            57889999999999998865311  012 3 468999999999986  467888888887765432   3     46688


Q ss_pred             ecchHHHhc
Q psy6791         276 DYLRDFINE  284 (293)
Q Consensus       276 tyTpeE~~~  284 (293)
                      .|||+||+.
T Consensus        70 v~tpeefe~   78 (90)
T d1ylqa1          70 ILTKKEWKM   78 (90)
T ss_dssp             EECHHHHHH
T ss_pred             EcCHHHHHH
Confidence            999999974

>d1ylqa1 d.218.1.5 (A:1-90) Putative nucleotidyltransferase AF0614 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Catalytic subunit of bi-partite nucleotidyltransferase
domain: Putative nucleotidyltransferase AF0614
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.89  E-value=0.11  Score=38.62  Aligned_cols=76  Identities=12%  Similarity=0.159  Sum_probs=50.8

Q ss_pred             HHHHHHhhhhccceeecccceeeeeccccCCCCCC-CCCeEEEEEEccccCCCCHhHHHHHHHHHHHHHHhhccCCccce
Q psy6791          74 KKPIMRKLKAVNFTIEMNYEQIRFVEKYYMDHVDY-WPLCVKLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAID  152 (293)
Q Consensus        74 ~~~I~~kL~~~~~~i~~~p~~l~v~neS~~h~v~~-~esHFkVvIVS~~F~G~s~lqRHRlVy~aL~dei~~~~~iHALs  152 (293)
                      ++.|.++....++=          +=-|+.-+-.. ..|-.-+.||++.+.  +..+|.+.+...+.....     +-+.
T Consensus         5 ~e~ik~~~~~~kVi----------LFGS~ArG~~~~~~SDiDllVV~~~~~--~~~~r~~~~~~~~~~~~~-----~pvd   67 (90)
T d1ylqa1           5 KEITKKDVQDAEIY----------LYGSVVEGDYSIGLSDIDVAIVSDVFE--DRNRKLEFFGKITKKFFD-----SPFE   67 (90)
T ss_dssp             HHHHHHHCTTCEEE----------EESHHHHCCSSSCCCSEEEEEECGGGG--SHHHHHHHHHHHHHHTTT-----CSEE
T ss_pred             HHHHHHHCCCcEEE----------EECccccCCCCCCCCccEEEEEeCCCC--CHHHHHHHHHHHHhhccC-----CCeE
Confidence            36666666553322          11444433332 468999999999996  467888888887765432     3379


Q ss_pred             eEEeChHHHHHhhc
Q psy6791         153 IHADTPEEWNDFRA  166 (293)
Q Consensus       153 IHA~TP~EW~~~~~  166 (293)
                      +|.+||+||+..+.
T Consensus        68 ~~v~tpeefe~~~k   81 (90)
T d1ylqa1          68 FHILTKKEWKMSKR   81 (90)
T ss_dssp             EEEECHHHHHHHHT
T ss_pred             EEEcCHHHHHHHHH
Confidence            99999999986543