Psyllid ID: psy6839

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260----
MSVVIFGLAFGLYFTFFIPLLYFTFLREFFGTTLFQSHTIYHINNLNQDTLAQIEENSNGTSILAEDEFYDAVESGSQNSEDLGSSRKSSIVSLIPAPSSATANHRLWPEEENSNGTSILAEDEFYDAVESGSQNSEDLGSSRKSSIVSLIPAPSSATANHRLWPEVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSVEGEGEGAEEY
ccEEEEEEHHHHHHHHHHHHHHHHHHHHHHcccEEccccEEEEccccHHHHHHHHHcccccEEEcccccccccccccccccccccccccccEEccccccHHHHcccccccccccccccccccccccccccccccccHHccccccccEEEEEccccccccccccccccccccccccccccccccccccEEEEccccHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccc
ccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHcHHccccEEEEHHcccHHHHHHHHHcccccEEEEcHHHHHHHccccccccccccccccHHHccccEEcHHHHHHHHccHHHHHccccEccccccccEEEEEEEEccccccHHHHHHHHHHHHHHcccEEEEEccEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccccccccccc
MSVVIFGLAFGLYFTFFIPLLYFTFLREffgttlfqsHTIYHINNLNQDTLAQIEensngtsilaedefydavesgsqnsedlgssrkssivslipapssatanhrlwpeeensngtsilaedefydavesgsqnsedlgssrkssivslipapssatanhrlwpevginyqpptvvpggdlakVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWyvgegmeegefsEAREDLAALEKDYeevgmdsvegegegaeey
MSVVIFGLAFGLYFTFFIPLLYFTFLREFFGTTLFQSHTIYHINNLNQDTLAQIEENSNGTSILAEDEFYDAVESGSQNSEDLGSSRKSSIVSLIPApssatanhrlwpeeENSNGTSILAEDEFYDAVESGSQNSEDLGSSRKSSIVSLIPAPSSATANHRLWPEVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYeevgmdsvegegegaeey
MSVVIFGLAFGLYFTFFIPLLYFTFLREFFGTTLFQSHTIYHINNLNQDTLAQIEENSNGTSILAEDEFYDAVESGSQNSEDLGSSRKSSIVSLIPAPSSATANHRLWPEEENSNGTSILAEDEFYDAVESGSQNSEDLGSSRKSSIVSLIPAPSSATANHRLWPEVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSVEGEGEGAEEY
**VVIFGLAFGLYFTFFIPLLYFTFLREFFGTTLFQSHTIYHINNLNQDTLAQI*********************************************************************************************************NHRLWPEVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG**************************************
*SVVIFGLAFGLYFTFFIPLLYFTFLREFFGTTLFQSHTIYHINNLNQDTLAQIEENSNGTSILAEDEFYDAVE***************SIVSLIPAPSSATANHRLWPEEENSNGTSILAEDEFYDAVESGSQNSEDLGSSRKSSIVSLIPAPSSATANHRLWPEVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS***********
MSVVIFGLAFGLYFTFFIPLLYFTFLREFFGTTLFQSHTIYHINNLNQDTLAQIEENSNGTSILAEDEFYDAV*******************SLIPAPSSATANHRLWPEEENSNGTSILAEDEFYDAV*******************SLIPAPSSATANHRLWPEVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG**************
*SVVIFGLAFGLYFTFFIPLLYFTFLREFFGTTLFQSHTIYHINNLNQDTLAQIEENSNGTSILAEDEFYDAVE**************S*IVSLIPAPSSATANHRLWPEEENSNGTSILAEDEFYDAVESGSQNSEDLGSSRKSSIVSLIPAPSSATANHRLWPEVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE*EFSEAREDLAALEKDYEEVGM*************
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MSVVIFGLAFGLYFTFFIPLLYFTFLREFFGTTLFQSHTIYHINNLNQDTLAQIEENSNGTSILAEDEFYDAVESGSQNSEDLGSSRKSSIVSLIPAPSSATANHRLWPEEENSNGTSILAEDEFYDAVESGSQNSEDLGSSRKSSIVSLIPAPSSATANHRLWPEVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGExxxxxxxxxxxxxxxxxxxxxSVEGEGEGAEEY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query264 2.2.26 [Sep-21-2011]
P09645324 Tubulin alpha-8 chain (Fr yes N/A 0.371 0.302 0.939 1e-49
P68373449 Tubulin alpha-1C chain OS no N/A 0.371 0.218 0.929 5e-49
P68365449 Tubulin alpha-1C chain OS yes N/A 0.371 0.218 0.929 5e-49
Q9BQE3449 Tubulin alpha-1C chain OS yes N/A 0.371 0.218 0.919 8e-49
Q6AYZ1449 Tubulin alpha-1C chain OS yes N/A 0.371 0.218 0.919 1e-48
P50719450 Tubulin alpha chain OS=Ha N/A N/A 0.375 0.22 0.909 1e-48
Q3ZCJ7449 Tubulin alpha-1C chain OS yes N/A 0.367 0.216 0.917 1e-48
P91910450 Tubulin alpha-3 chain OS= yes N/A 0.375 0.22 0.909 1e-48
Q8WQ47450 Tubulin alpha chain OS=Le N/A N/A 0.375 0.22 0.898 1e-48
Q5XIF6448 Tubulin alpha-4A chain OS yes N/A 0.367 0.216 0.927 2e-48
>sp|P09645|TBA8_CHICK Tubulin alpha-8 chain (Fragment) OS=Gallus gallus PE=3 SV=1 Back     alignment and function desciption
 Score =  196 bits (499), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 93/99 (93%), Positives = 96/99 (96%), Gaps = 1/99 (1%)

Query: 166 EVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGE 225
           +VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGE
Sbjct: 227 KVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGE 286

Query: 226 GMEEGEFSEAREDLAALEKDYEEVGMDSVEGEGEGAEEY 264
           GMEEGEFSEAREDLAALEKDYEEVG DS++GE EG EEY
Sbjct: 287 GMEEGEFSEAREDLAALEKDYEEVGTDSMDGEDEG-EEY 324
Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.
Gallus gallus (taxid: 9031)
>sp|P68373|TBA1C_MOUSE Tubulin alpha-1C chain OS=Mus musculus GN=Tuba1c PE=1 SV=1 Back     alignment and function description
>sp|P68365|TBA1C_CRIGR Tubulin alpha-1C chain OS=Cricetulus griseus GN=TUBA1C PE=2 SV=1 Back     alignment and function description
>sp|Q9BQE3|TBA1C_HUMAN Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C PE=1 SV=1 Back     alignment and function description
>sp|Q6AYZ1|TBA1C_RAT Tubulin alpha-1C chain OS=Rattus norvegicus GN=Tuba1c PE=1 SV=1 Back     alignment and function description
>sp|P50719|TBA_HAECO Tubulin alpha chain OS=Haemonchus contortus PE=2 SV=1 Back     alignment and function description
>sp|Q3ZCJ7|TBA1C_BOVIN Tubulin alpha-1C chain OS=Bos taurus GN=TUBA1C PE=1 SV=1 Back     alignment and function description
>sp|P91910|TBA3_CAEEL Tubulin alpha-3 chain OS=Caenorhabditis elegans GN=mec-12 PE=1 SV=1 Back     alignment and function description
>sp|Q8WQ47|TBA_LEPDS Tubulin alpha chain OS=Lepidoglyphus destructor PE=1 SV=2 Back     alignment and function description
>sp|Q5XIF6|TBA4A_RAT Tubulin alpha-4A chain OS=Rattus norvegicus GN=Tuba4a PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query264
121544009 450 putative alpha-tubulin [Maconellicoccus 0.375 0.22 0.989 7e-52
119117127 428 alpha-tubulin [Cryptocercus punctulatus] 0.375 0.231 0.989 8e-52
45239446 450 alpha 2-tubulin [Laodelphax striatella] 0.375 0.22 0.989 8e-52
345486677 463 PREDICTED: tubulin alpha-1 chain-like is 0.375 0.213 0.989 9e-52
156548568 450 PREDICTED: tubulin alpha-1 chain-like is 0.375 0.22 0.989 9e-52
332027696 595 Tubulin alpha-1 chain [Acromyrmex echina 0.375 0.166 0.959 9e-51
388523601 450 tubulin alpha-1 chain [Cryptocercus punc 0.375 0.22 0.969 1e-50
322788223 453 hypothetical protein SINV_15229 [Solenop 0.375 0.218 0.959 2e-50
307182561 415 Tubulin alpha-1 chain [Camponotus florid 0.375 0.238 0.939 4e-50
321478016 450 hypothetical protein DAPPUDRAFT_220904 [ 0.375 0.22 0.959 4e-50
>gi|121544009|gb|ABM55668.1| putative alpha-tubulin [Maconellicoccus hirsutus] Back     alignment and taxonomy information
 Score =  209 bits (533), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 98/99 (98%), Positives = 99/99 (100%)

Query: 166 EVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGE 225
           +VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGE
Sbjct: 352 KVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGE 411

Query: 226 GMEEGEFSEAREDLAALEKDYEEVGMDSVEGEGEGAEEY 264
           GMEEGEFSEAREDLAALEKDYEEVGMDSVEGEGEGAEEY
Sbjct: 412 GMEEGEFSEAREDLAALEKDYEEVGMDSVEGEGEGAEEY 450

Source: Maconellicoccus hirsutus

Species: Maconellicoccus hirsutus

Genus: Maconellicoccus

Family: Pseudococcidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|119117127|gb|ABL61211.1| alpha-tubulin [Cryptocercus punctulatus] Back     alignment and taxonomy information
>gi|45239446|gb|AAS55708.1| alpha 2-tubulin [Laodelphax striatella] Back     alignment and taxonomy information
>gi|345486677|ref|XP_003425528.1| PREDICTED: tubulin alpha-1 chain-like isoform 2 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|156548568|ref|XP_001606870.1| PREDICTED: tubulin alpha-1 chain-like isoform 1 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|332027696|gb|EGI67764.1| Tubulin alpha-1 chain [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|388523601|gb|AFK49799.1| tubulin alpha-1 chain [Cryptocercus punctulatus] Back     alignment and taxonomy information
>gi|322788223|gb|EFZ14005.1| hypothetical protein SINV_15229 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307182561|gb|EFN69754.1| Tubulin alpha-1 chain [Camponotus floridanus] Back     alignment and taxonomy information
>gi|321478016|gb|EFX88974.1| hypothetical protein DAPPUDRAFT_220904 [Daphnia pulex] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query264
FB|FBgn0003884450 alphaTub84B "alpha-Tubulin at 0.375 0.22 0.969 1.1e-48
FB|FBgn0003885450 alphaTub84D "alpha-Tubulin at 0.375 0.22 0.969 1.1e-48
ZFIN|ZDB-GENE-051127-7450 zgc:123298 "zgc:123298" [Danio 0.375 0.22 0.959 2.3e-48
UNIPROTKB|Q2HJ86452 TUBA1D "Tubulin alpha-1D chain 0.375 0.219 0.940 5.4e-47
UNIPROTKB|L7N0G4451 TUBA3C "Uncharacterized protei 0.375 0.219 0.94 5.4e-47
UNIPROTKB|P02552412 P02552 "Tubulin alpha-1 chain" 0.375 0.240 0.94 6.9e-47
UNIPROTKB|F2Z4C1451 TUBA3C "Uncharacterized protei 0.375 0.219 0.94 6.9e-47
UNIPROTKB|P81947451 P81947 "Tubulin alpha-1B chain 0.375 0.219 0.94 6.9e-47
UNIPROTKB|L7N0B2451 TUBA1B "Uncharacterized protei 0.375 0.219 0.94 6.9e-47
UNIPROTKB|F8VWX4182 TUBA1A "Tubulin alpha-1A chain 0.375 0.543 0.94 6.9e-47
FB|FBgn0003884 alphaTub84B "alpha-Tubulin at 84B" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 96/99 (96%), Positives = 98/99 (98%)

Query:   166 EVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGE 225
             +VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGE
Sbjct:   352 KVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGE 411

Query:   226 GMEEGEFSEAREDLAALEKDYEEVGMDSVEGEGEGAEEY 264
             GMEEGEFSEAREDLAALEKDYEEVGMDS +GEGEGAEEY
Sbjct:   412 GMEEGEFSEAREDLAALEKDYEEVGMDSGDGEGEGAEEY 450
GO:0045298 "tubulin complex" evidence=NAS
GO:0005525 "GTP binding" evidence=IEA;NAS
GO:0005874 "microtubule" evidence=ISS;NAS
GO:0005200 "structural constituent of cytoskeleton" evidence=IEA;ISS
GO:0006184 "GTP catabolic process" evidence=IEA
GO:0051258 "protein polymerization" evidence=IEA
GO:0003924 "GTPase activity" evidence=IEA
GO:0007094 "mitotic spindle assembly checkpoint" evidence=IDA
GO:0009987 "cellular process" evidence=IMP
GO:0005819 "spindle" evidence=IDA
GO:0019730 "antimicrobial humoral response" evidence=IMP
GO:0007052 "mitotic spindle organization" evidence=IMP
GO:0005813 "centrosome" evidence=IDA
GO:0000235 "astral microtubule" evidence=IDA
FB|FBgn0003885 alphaTub84D "alpha-Tubulin at 84D" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-051127-7 zgc:123298 "zgc:123298" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q2HJ86 TUBA1D "Tubulin alpha-1D chain" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|L7N0G4 TUBA3C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P02552 P02552 "Tubulin alpha-1 chain" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z4C1 TUBA3C "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P81947 P81947 "Tubulin alpha-1B chain" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|L7N0B2 TUBA1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F8VWX4 TUBA1A "Tubulin alpha-1A chain" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P02553TBA_LYTPINo assigned EC number0.97750.33710.5527N/AN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query264
PTZ00335448 PTZ00335, PTZ00335, tubulin alpha chain; Provision 6e-63
PLN00221450 PLN00221, PLN00221, tubulin alpha chain; Provision 1e-62
cd02186434 cd02186, alpha_tubulin, The tubulin superfamily in 2e-61
COG5023443 COG5023, COG5023, Tubulin [Cytoskeleton] 1e-39
cd06059382 cd06059, Tubulin, The tubulin superfamily includes 9e-23
cd02187425 cd02187, beta_tubulin, The tubulin superfamily inc 3e-14
PLN00220447 PLN00220, PLN00220, tubulin beta chain; Provisiona 4e-14
PTZ00010445 PTZ00010, PTZ00010, tubulin beta chain; Provisiona 8e-14
pfam03953126 pfam03953, Tubulin_C, Tubulin C-terminal domain 1e-10
cd02190379 cd02190, epsilon_tubulin, The tubulin superfamily 1e-08
cd02189446 cd02189, delta_tubulin, The tubulin superfamily in 1e-06
PTZ00387465 PTZ00387, PTZ00387, epsilon tubulin; Provisional 2e-05
cd02188431 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquit 2e-05
pfam10160261 pfam10160, Tmemb_40, Predicted membrane protein 9e-04
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional Back     alignment and domain information 
 Score =  203 bits (518), Expect = 6e-63
 Identities = 81/96 (84%), Positives = 88/96 (91%)

Query: 167 VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG 226
            GINYQPPTVVPGGDLAKVQRAVCM+SN+TAIAE ++R+DHKFDLMYAKRAFVHWYVGEG
Sbjct: 353 CGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEG 412

Query: 227 MEEGEFSEAREDLAALEKDYEEVGMDSVEGEGEGAE 262
           MEEGEFSEAREDLAALEKDYEEVG +S + EGE   
Sbjct: 413 MEEGEFSEAREDLAALEKDYEEVGAESADEEGEEDV 448

Length = 448
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|217812 pfam03953, Tubulin_C, Tubulin C-terminal domain Back     alignment and domain information
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional Back     alignment and domain information
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>gnl|CDD|220606 pfam10160, Tmemb_40, Predicted membrane protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 264
COG5023443 Tubulin [Cytoskeleton] 100.0
PLN00221450 tubulin alpha chain; Provisional 100.0
PTZ00335448 tubulin alpha chain; Provisional 100.0
cd02187425 beta_tubulin The tubulin superfamily includes five 100.0
PTZ00010445 tubulin beta chain; Provisional 100.0
PLN00220447 tubulin beta chain; Provisional 100.0
PLN00222454 tubulin gamma chain; Provisional 100.0
cd02186434 alpha_tubulin The tubulin superfamily includes fiv 100.0
KOG1374|consensus448 100.0
cd02188431 gamma_tubulin Gamma-tubulin is a ubiquitous phylog 100.0
cd02190379 epsilon_tubulin The tubulin superfamily includes f 100.0
PTZ00387465 epsilon tubulin; Provisional 100.0
cd06059382 Tubulin The tubulin superfamily includes five dist 100.0
cd02189446 delta_tubulin The tubulin superfamily includes fiv 100.0
KOG1375|consensus369 100.0
KOG1376|consensus407 100.0
cd00286328 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin 99.88
PF03953126 Tubulin_C: Tubulin C-terminal domain; InterPro: IP 99.67
PF00091216 Tubulin: Tubulin/FtsZ family, GTPase domain; Inter 99.14
cd06060493 misato Human Misato shows similarity with Tubulin/ 98.88
smart00864192 Tubulin Tubulin/FtsZ family, GTPase domain. This d 98.8
cd02202349 FtsZ_type2 FtsZ is a GTPase that is similar to the 98.77
cd02191303 FtsZ FtsZ is a GTPase that is similar to the eukar 98.6
PRK13018378 cell division protein FtsZ; Provisional 98.2
cd02201304 FtsZ_type1 FtsZ is a GTPase that is similar to the 98.15
TIGR00065349 ftsZ cell division protein FtsZ. This family consi 98.11
PRK09330384 cell division protein FtsZ; Validated 97.89
PF14881180 Tubulin_3: Tubulin domain 96.61
smart00865120 Tubulin_C Tubulin/FtsZ family, C-terminal domain. 96.56
COG0206338 FtsZ Cell division GTPase [Cell division and chrom 93.81
KOG2530|consensus483 89.72
>COG5023 Tubulin [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=4.8e-65  Score=466.66  Aligned_cols=239  Identities=37%  Similarity=0.546  Sum_probs=218.4

Q ss_pred             EccccccccccchhHhHHHHHHHHhCcceecEEEEEecCCC--------Ch-hHHhHHhhcCCeeEEeccHHHHHHHH--
Q psy6839           6 FGLAFGLYFTFFIPLLYFTFLREFFGTTLFQSHTIYHINNL--------NQ-DTLAQIEENSNGTSILAEDEFYDAVE--   74 (264)
Q Consensus         6 ~~~~~~~~~~~~~~~llle~Lrd~Yp~~~~~~~sV~P~~~~--------Ns-Ltl~~L~e~sD~v~~~dNdaL~~i~~--   74 (264)
                      ||=+||+-|.    |||||+|+||||||.+++|||||.++.        |+ ||+|+|+|+|||++|+||+||++||.  
T Consensus       139 ~gGGTGSG~G----slLLerl~~eypkK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~  214 (443)
T COG5023         139 LGGGTGSGLG----SLLLERLREEYPKKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRN  214 (443)
T ss_pred             ccCcCcccHH----HHHHHHHHHhcchhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHh
Confidence            5667887665    999999999999999999999998766        99 99999999999999999999999998  


Q ss_pred             -------------------hcCCCC----cccCCChhhccccCCCCCCcc------c--------cc---------cccc
Q psy6839          75 -------------------SGSQNS----EDLGSSRKSSIVSLIPAPSSA------T--------AN---------HRLW  108 (264)
Q Consensus        75 -------------------s~~t~s----~~ln~~l~~l~~nLvP~P~lh------t--------~~---------~ql~  108 (264)
                                         |++|++    |+||+||+++.+||||+|++|      |        ++         +|||
T Consensus       215 L~i~~P~y~~lN~LIs~VmSsvTtslRfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f  294 (443)
T COG5023         215 LRIQNPSYDDLNQLISTVMSSVTTSLRFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLF  294 (443)
T ss_pred             cCCCCCChHHHHHHHHHHHHhhhheeecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHh
Confidence                               677777    999999999999999999999      1        11         8899


Q ss_pred             ccC------CCCCCcccchhhccccCcccCC-CC-ccccccCccccccccCCCCCccccccccccceeeecCCCCCCCCC
Q psy6839         109 PEE------ENSNGTSILAEDEFYDAVESGS-QN-SEDLGSSRKSSIVSLIPAPSSATANHRLWPEVGINYQPPTVVPGG  180 (264)
Q Consensus       109 ~~~------~~~~~~~Ls~~~i~RG~~~~~~-~~-~~~i~~~~~~~fv~W~p~~~~~~~~~~~~~kv~l~~~~p~~~~~~  180 (264)
                      +|+      +++.++|+++++++||++++++ ++ +.+++.|+.++||+|+|.++          |+++|+++|..    
T Consensus       295 ~p~N~mv~~dpr~g~y~~~~~l~rG~v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~----------~vai~~~~P~~----  360 (443)
T COG5023         295 DPKNQMVSCDPRKGRYMAVCLLFRGDVDPRDVSRAVTRVQSKRTIQFVEWCPTGF----------KVAICKRPPSE----  360 (443)
T ss_pred             CcccceeeecCCCCeeeehhHHHhcCCCHHHHHHHHHHHHhcCcccccccCCcce----------eeeeeccCCcc----
Confidence            987      7899999999999999999999 77 88999999999999999999          89999999943    


Q ss_pred             cccchhceeeeecCchHHHHHHHHhHHHHHHHhhhhcceeccccCCCChhhHHHHHHHHHHHHHHHHHHccCCccCCCCC
Q psy6839         181 DLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSVEGEGEG  260 (264)
Q Consensus       181 ~~~~~~~S~~~LsNsTsI~~~l~~i~~~f~~mf~krAfLH~Y~~eGmee~eF~eA~~~le~li~eY~~~~~~~~~~~~~~  260 (264)
                       ..+.++|+|||+|+|+|...|+|+.+||++||+||||||||+++||||+||.||++.|++|++||++++++.+.++...
T Consensus       361 -~~~~~~s~~~lsNtTsi~e~fkr~~~qFd~mf~krAFlhwY~~egmee~EFsEare~~~~L~~eY~~~~~~s~~~~~~~  439 (443)
T COG5023         361 -PAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFKKRAFLHWYVGEGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEED  439 (443)
T ss_pred             -cccceeeeEeecCcHHHHHHHHHhhhHHHHHHHhhHHHHHHhhccCcccchhhHHHHHHHHHHHHHHhccccccchhhh
Confidence             3468899999999999999999999999999999999999999999999999999999999999999999988665543


Q ss_pred             ccC
Q psy6839         261 AEE  263 (264)
Q Consensus       261 ~~~  263 (264)
                      .||
T Consensus       440 ~~~  442 (443)
T COG5023         440 EEE  442 (443)
T ss_pred             hcc
Confidence            333

>PLN00221 tubulin alpha chain; Provisional Back     alignment and domain information
>PTZ00335 tubulin alpha chain; Provisional Back     alignment and domain information
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>PTZ00010 tubulin beta chain; Provisional Back     alignment and domain information
>PLN00220 tubulin beta chain; Provisional Back     alignment and domain information
>PLN00222 tubulin gamma chain; Provisional Back     alignment and domain information
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>KOG1374|consensus Back     alignment and domain information
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>PTZ00387 epsilon tubulin; Provisional Back     alignment and domain information
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>KOG1375|consensus Back     alignment and domain information
>KOG1376|consensus Back     alignment and domain information
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>PRK13018 cell division protein FtsZ; Provisional Back     alignment and domain information
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>TIGR00065 ftsZ cell division protein FtsZ Back     alignment and domain information
>PRK09330 cell division protein FtsZ; Validated Back     alignment and domain information
>PF14881 Tubulin_3: Tubulin domain Back     alignment and domain information
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain Back     alignment and domain information
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG2530|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query264
1z2b_A448 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 1e-49
3ryc_A451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 4e-48
4i4t_A450 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 4e-48
3hkb_A451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 5e-48
1ffx_A451 Tubulin:stathmin-Like Domain Complex Length = 451 2e-47
1tub_A440 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 2e-47
1sa0_A451 Tubulin-Colchicine: Stathmin-Like Domain Complex Le 2e-47
2xrp_B452 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 2e-47
1jff_A451 Refined Structure Of Alpha-Beta Tubulin From Zinc-I 2e-47
3du7_A449 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 4e-47
4drx_A437 Gtp-Tubulin In Complex With A Darpin Length = 437 2e-46
4ffb_A447 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 1e-37
3ryc_B445 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 4e-10
1z2b_B445 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 4e-10
3du7_B445 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 4e-10
4drx_B431 Gtp-Tubulin In Complex With A Darpin Length = 431 4e-10
4f61_B445 Tubulin:stathmin-Like Domain Complex Length = 445 4e-10
4i4t_B445 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 5e-10
1tub_B427 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 5e-10
4ffb_B463 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 5e-10
1ffx_B445 Tubulin:stathmin-Like Domain Complex Length = 445 5e-10
2xrp_A445 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 5e-10
2bto_A473 Structure Of Btuba From Prosthecobacter Dejongeii L 1e-06
2e4h_B36 Solution Structure Of Cytoskeletal Protein In Compl 3e-06
2btq_B426 Structure Of Btubab Heterodimer From Prosthecobacte 1e-05
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 448 Back     alignment and structure 
Iteration: 1

 Score =  192 bits (489), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 90/97 (92%), Positives = 93/97 (95%)
Query: 166 EVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGE 225
           +VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGE
Sbjct: 352 KVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGE 411
Query: 226 GMEEGEFSEAREDLAALEKDYEEVGMDSVEGEGEGAE 262
           GMEEGEFSEARED+AALEKDYEEVG+DS E E EG E
Sbjct: 412 GMEEGEFSEAREDMAALEKDYEEVGIDSYEDEDEGEE 448
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 450 Back     alignment and structure
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 440 Back     alignment and structure
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 452 Back     alignment and structure
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced Sheets Stabilized With Taxol Length = 451 Back     alignment and structure
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 449 Back     alignment and structure
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin Length = 437 Back     alignment and structure
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 447 Back     alignment and structure
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin Length = 431 Back     alignment and structure
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 445 Back     alignment and structure
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 427 Back     alignment and structure
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 463 Back     alignment and structure
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 445 Back     alignment and structure
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii Length = 473 Back     alignment and structure
>pdb|2E4H|B Chain B, Solution Structure Of Cytoskeletal Protein In Complex With Tubulin Tail Length = 36 Back     alignment and structure
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter Dejongeii Length = 426 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query264
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 6e-46
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 3e-43
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 3e-36
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 4e-36
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 2e-35
2e4h_B36 Tubulin alpha-ubiquitous chain; cytoskeleton, CAP- 2e-10
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A* 2wbe_A* 3dco_A* ... Length = 451 Back     alignment and structure
 Score =  158 bits (402), Expect = 6e-46
 Identities = 94/99 (94%), Positives = 96/99 (96%), Gaps = 1/99 (1%)

Query: 167 VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG 226
           VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG
Sbjct: 353 VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG 412

Query: 227 MEEGEFSEAREDLAALEKDYEEVGMDSVEGEGEG-AEEY 264
           MEEGEFSEARED+AALEKDYEEVG+DSVEGEGE   EEY
Sbjct: 413 MEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY 451
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* ... Length = 445 Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Length = 473 Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Length = 475 Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Length = 426 Back     alignment and structure
>2e4h_B Tubulin alpha-ubiquitous chain; cytoskeleton, CAP-Gly, complex structure, solution structure, CLIP, structural protein; NMR {Homo sapiens} Length = 36 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query264
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 100.0
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 100.0
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 100.0
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 100.0
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 100.0
2vap_A364 FTSZ, cell division protein FTSZ homolog 1; polyme 99.5
2r75_1338 Cell division protein FTSZ; GTPase, tubulin-like, 99.5
2vxy_A382 FTSZ, cell division protein FTSZ; GTP-binding, nuc 99.49
1w5f_A353 Cell division protein FTSZ; complete proteome, GTP 99.49
1ofu_A320 FTSZ, cell division protein FTSZ; bacterial cell d 99.46
2vaw_A394 FTSZ, cell division protein FTSZ; bacterial cell d 99.44
1rq2_A382 Cell division protein FTSZ; cell cycle, tubulin, G 99.41
4dxd_A396 Cell division protein FTSZ; rossmann fold, GTPase, 98.82
3v3t_A360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 98.77
3m89_A427 FTSZ/tubulin-related protein; partition, TUBZ, GTP 98.71
2e4h_B36 Tubulin alpha-ubiquitous chain; cytoskeleton, CAP- 97.14
4ei7_A389 Plasmid replication protein REPX; GTP hydrolase, p 92.99
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3ut5_A* 4eb6_A* 4f61_A* 4f6r_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* ... Back     alignment and structure
Probab=100.00  E-value=3.2e-62  Score=467.99  Aligned_cols=244  Identities=48%  Similarity=0.696  Sum_probs=212.7

Q ss_pred             ccccccccccchhHhHHHHHHHHhCcceecEEEEEecCCC--------Ch-hHHhHHhhcCCeeEEeccHHHHHHHH---
Q psy6839           7 GLAFGLYFTFFIPLLYFTFLREFFGTTLFQSHTIYHINNL--------NQ-DTLAQIEENSNGTSILAEDEFYDAVE---   74 (264)
Q Consensus         7 ~~~~~~~~~~~~~~llle~Lrd~Yp~~~~~~~sV~P~~~~--------Ns-Ltl~~L~e~sD~v~~~dNdaL~~i~~---   74 (264)
                      |=+||+-|+    ++|+|+|+|+|||+.+++++|||++..        |+ ||+++|.++||+++++||+||++||.   
T Consensus       142 gGGTGSG~g----s~lle~L~~ey~kk~~~~~~v~P~~~~s~~vvepYNa~Lsl~~L~e~sD~~~~idNeaL~~ic~~~l  217 (451)
T 3ryc_A          142 GGGTGSGFT----SLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNL  217 (451)
T ss_dssp             SSHHHHHHH----HHHHHHHHHHTTTCEEEEEEEECCTTTCCCTTHHHHHHHHHHHHGGGCSEEEEEEHHHHHHHHHHHH
T ss_pred             CCCCCccHH----HHHHHHHHHhcCcceEEEEEEecCCCcccccceehHHHHHHHHHHhcccceeEeccHHHHHHHHHhc
Confidence            445666666    999999999999999999999998743        99 99999999999999999999999995   


Q ss_pred             ------------------hcCCCC----cccCCChhhccccCCCCCCcc---c-----------cc---------ccccc
Q psy6839          75 ------------------SGSQNS----EDLGSSRKSSIVSLIPAPSSA---T-----------AN---------HRLWP  109 (264)
Q Consensus        75 ------------------s~~t~s----~~ln~~l~~l~~nLvP~P~lh---t-----------~~---------~ql~~  109 (264)
                                        |++|++    |.+|.||+++.+||||+|++|   +           .+         +++|+
T Consensus       218 ~i~~p~y~~lN~lIa~~~s~iT~slRf~G~lN~Dl~~l~tnLVP~PrlHF~~~s~aPl~s~~~~~~~~~sv~elt~~~f~  297 (451)
T 3ryc_A          218 DIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE  297 (451)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHHHHHTTCSSSCSHHHHHHHHCSSSSCCCCEEEEECCCBSSSCCCCCCCHHHHHHHTTC
T ss_pred             cCCCCCchhhHHHHHhcccccccccccCcccccCHHHHhhccCCCCceeeeccccCccccccccccccCCHHHHHHHHhc
Confidence                              344444    999999999999999999999   1           01         56777


Q ss_pred             cC------CCCCCcccchhhccccCcccCC-CC-ccccccCccccccccCCCCCccccccccccceeeecCCCCCCCCCc
Q psy6839         110 EE------ENSNGTSILAEDEFYDAVESGS-QN-SEDLGSSRKSSIVSLIPAPSSATANHRLWPEVGINYQPPTVVPGGD  181 (264)
Q Consensus       110 ~~------~~~~~~~Ls~~~i~RG~~~~~~-~~-~~~i~~~~~~~fv~W~p~~~~~~~~~~~~~kv~l~~~~p~~~~~~~  181 (264)
                      ++      +|+.|||||+++++||++++++ .+ +.+++.|+.+.|++|+|+++          |+++|++||...|+.+
T Consensus       298 ~~n~m~~~dp~~gky~a~~~~~RG~v~~~dv~~~i~~ik~k~~~~Fv~W~p~~~----------kv~i~~~pP~~~p~~~  367 (451)
T 3ryc_A          298 PANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGF----------KVGINYQPPTVVPGGD  367 (451)
T ss_dssp             GGGBSSCCCGGGSCEEEEEEEEEESCCHHHHHHHHHHHHHHCCCCBCTTSCEEE----------EEEEECSCCCCCTTSS
T ss_pred             cccceEecCCCCCchheehhhcccCCCHHHHHHHHHHHhhcCCcceEEEccCce----------eeeeeccCCccCCCcc
Confidence            65      7889999999999999999998 66 88888889999999999999          8999999999999999


Q ss_pred             ccchhceeeeecCchHHHHHHHHhHHHHHHHhhhhcceeccccCCCChhhHHHHHHHHHHHHHHHHHHccCCccC-CCCC
Q psy6839         182 LAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSVEG-EGEG  260 (264)
Q Consensus       182 ~~~~~~S~~~LsNsTsI~~~l~~i~~~f~~mf~krAfLH~Y~~eGmee~eF~eA~~~le~li~eY~~~~~~~~~~-~~~~  260 (264)
                      +++.+++++||+|+|+|.+.|+++.+||++||+||||||||++|||||+||.||++++++|++||++++.+.+++ +.++
T Consensus       368 la~~~~s~~~lsNsTaI~~~f~rl~~kFd~m~~krAFvHwY~~eGmee~eF~EA~e~l~~L~~eY~~~~~~~~~~~~~~~  447 (451)
T 3ryc_A          368 LAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEE  447 (451)
T ss_dssp             BCCCSEEEEEEEEEGGGHHHHHHHHHHHHHHHTTTTTTHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHCC---------
T ss_pred             ccccceeeEEecCchHHHHHHHHHHHHHHHHhhcceeHhhhcCCccchhhHHHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999887753 3477


Q ss_pred             ccCC
Q psy6839         261 AEEY  264 (264)
Q Consensus       261 ~~~~  264 (264)
                      +|||
T Consensus       448 ~~~~  451 (451)
T 3ryc_A          448 GEEY  451 (451)
T ss_dssp             ----
T ss_pred             ccCC
Confidence            7776
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3ut5_B* 4eb6_B* 4f6r_B* 4f61_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 4aqv_B* 4aqw_B* 4atu_A* ... Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Back     alignment and structure
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A* Back     alignment and structure
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1* Back     alignment and structure
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A* Back     alignment and structure
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A* Back     alignment and structure
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding, cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A {Staphylococcus aureus} PDB: 3vo8_A* Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Back     alignment and structure
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A* Back     alignment and structure
>2e4h_B Tubulin alpha-ubiquitous chain; cytoskeleton, CAP-Gly, complex structure, solution structure, CLIP, structural protein; NMR {Homo sapiens} Back     alignment and structure
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 264
d1tuba2195 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (S 8e-47
d1tubb2184 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Su 1e-32
d2btoa2180 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosth 2e-32
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 195 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: Tubulin C-terminal domain-like
family: Tubulin, C-terminal domain
domain: Tubulin alpha-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  152 bits (386), Expect = 8e-47
 Identities = 85/88 (96%), Positives = 88/88 (100%)

Query: 167 VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG 226
           VGINY+PPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG
Sbjct: 108 VGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG 167

Query: 227 MEEGEFSEAREDLAALEKDYEEVGMDSV 254
           MEEGEFSEARED+AALEKDYEEVG+DSV
Sbjct: 168 MEEGEFSEAREDMAALEKDYEEVGVDSV 195
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 184 Back     information, alignment and structure
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 180 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query264
d1tuba2195 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 100.0
d1tubb2184 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 100.0
d2btoa2180 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 100.0
d2btoa1244 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 99.63
d1tuba1245 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 99.58
d1tubb1243 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 99.55
d2vapa1209 Cell-division protein FtsZ {Archaeon Methanococcus 96.19
d1w5fa1194 Cell-division protein FtsZ {Thermotoga maritima [T 95.63
d1ofua1198 Cell-division protein FtsZ {Pseudomonas aeruginosa 95.55
d1rq2a1198 Cell-division protein FtsZ {Mycobacterium tubercul 93.88
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: Tubulin C-terminal domain-like
family: Tubulin, C-terminal domain
domain: Tubulin alpha-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=5.4e-45  Score=312.74  Aligned_cols=163  Identities=57%  Similarity=0.873  Sum_probs=149.7

Q ss_pred             cccCCChhhccccCCCCCCcc--c------------cc---------ccccccC------CCCCCcccchhhccccCccc
Q psy6839          81 EDLGSSRKSSIVSLIPAPSSA--T------------AN---------HRLWPEE------ENSNGTSILAEDEFYDAVES  131 (264)
Q Consensus        81 ~~ln~~l~~l~~nLvP~P~lh--t------------~~---------~ql~~~~------~~~~~~~Ls~~~i~RG~~~~  131 (264)
                      |.||+||+++.+||||+|+||  +            .+         +++|+++      +++.++|+++++++||++.+
T Consensus         1 G~lN~Dl~kl~tNLVPfPrlhFl~~s~aP~~~~~~~~~~~~s~~~l~~~lf~~~n~~~~~~~~~~~yls~~~~~RG~~~~   80 (195)
T d1tuba2           1 GALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVP   80 (195)
T ss_dssp             CSSCCCHHHHHHHHCSSSSCCCCBCCBCCCCCTTCCCSSSCCTTHHHHHHHSTTTCSSCCCTTSSCEEEEEEEEESSCCH
T ss_pred             CCCcchHHHhhccCCCCCcccchhccccccCchhhhhhhcCcHHHHHHHHhchhhhhcccCCCccHHHHHHHHHhCCCCc
Confidence            789999999999999999999  1            00         4566655      67899999999999999988


Q ss_pred             CC-CC-ccccccCccccccccCCCCCccccccccccceeeecCCCCCCCCCcccchhceeeeecCchHHHHHHHHhHHHH
Q psy6839         132 GS-QN-SEDLGSSRKSSIVSLIPAPSSATANHRLWPEVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF  209 (264)
Q Consensus       132 ~~-~~-~~~i~~~~~~~fv~W~p~~~~~~~~~~~~~kv~l~~~~p~~~~~~~~~~~~~S~~~LsNsTsI~~~l~~i~~~f  209 (264)
                      .+ .+ +.+++.++.+.|++|+|+++          |+++|+++|...|++++.+.++++++|+|+|+|...|+++.+||
T Consensus        81 ~ei~~~i~~ik~~~~~~fv~W~~~~~----------kv~~~~~~p~~~~~~~l~~~~~s~~~l~N~TsI~~~f~~i~~~F  150 (195)
T d1tuba2          81 KDVNAAIATIKTKRTIQFVDWCPTGF----------KVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF  150 (195)
T ss_dssp             HHHHHHHHHHTTSSTTCCCSSCSSCC----------EEEEESSCCCCCTGGGCCCCCCCCBEEEEETTHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhCCcchhhhhccce----------eeeecCCCCccCCCcchhhhhhhhhHhcCChhHHHHHHHHHHHH
Confidence            88 66 78888888899999999999          89999999998888888889999999999999999999999999


Q ss_pred             HHHhhhhcceeccccCCCChhhHHHHHHHHHHHHHHHHHHccCC
Q psy6839         210 DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS  253 (264)
Q Consensus       210 ~~mf~krAfLH~Y~~eGmee~eF~eA~~~le~li~eY~~~~~~~  253 (264)
                      ++||+||||||||++||||++||+||+++|++||+||+++++|.
T Consensus       151 dkl~~rkAflh~Y~~egmee~eF~EA~e~l~~li~eY~~~~~~~  194 (195)
T d1tuba2         151 DLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDS  194 (195)
T ss_dssp             HHHTTTTCCTTTGGGGSCCSSSSHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHhhchHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999999999999999999999999999999998765
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure