Psyllid ID: psy6872

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
Protein Sequence
MNLESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFMAHHLTF
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccHHHHccccccEEEEHcHHHHHHHHHHHHHHHHHHHHccccccEEEcccc
Coil and Loop (DISEMBL)
mnlestcqTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPYlnkvlktrpvkmkywltpLPIAVLIVIYGEFGKIISrlypnsfmahhltf
Flexible Loop (DISEMBL)
MNLESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFMAHHLTF
Low Complexity Region (SEG)
MNLESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFMAHHLTF
Disordered region (IsUnstruct)
*****TCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFMAH****
Disordered Region (DISOPRED)
MNLESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFMAHHLTF
Disordered Region (DISEMBL)
MNLESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFMAHHLTF
Disordered Region (DISPRO)
*NLESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFMAHHL*F
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNLESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFMAHHLTF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	112	2.2.26 [Sep-21-2011]
P13607	1041	Sodium/potassium-transpor	yes	N/A	0.928	0.099	0.5	6e-25
P17326	996	Sodium/potassium-transpor	N/A	N/A	0.928	0.104	0.490	4e-24
P28774	1004	Sodium/potassium-transpor	N/A	N/A	0.928	0.103	0.490	2e-23
Q64541	1028	Sodium/potassium-transpor	yes	N/A	0.928	0.101	0.490	3e-22
Q9WV27	1032	Sodium/potassium-transpor	yes	N/A	0.928	0.100	0.471	8e-22
Q13733	1029	Sodium/potassium-transpor	yes	N/A	0.928	0.101	0.432	2e-21
P35317	1031	Sodium/potassium-transpor	N/A	N/A	0.928	0.100	0.442	2e-21
P06686	1020	Sodium/potassium-transpor	no	N/A	0.928	0.101	0.451	3e-21
Q5RCD8	1020	Sodium/potassium-transpor	no	N/A	0.928	0.101	0.451	3e-21
D2WKD8	1020	Sodium/potassium-transpor	no	N/A	0.928	0.101	0.451	3e-21

>sp|P13607|ATNA_DROME Sodium/potassium-transporting ATPase subunit alpha OS=Drosophila melanogaster GN=Atpalpha PE=1 SV=3

 Score =  112 bits (280), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 52/104 (50%), Positives = 68/104 (65%)

Query: 3    LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY 62
            LE TC TA+FISIV+ Q A LI+CKTR NSI+QQ M NW LN GLVFE ++A  LSY P 
Sbjct: 932  LEYTCHTAFFISIVVVQWADLIICKTRRNSIFQQGMRNWALNFGLVFETVLAAFLSYCPG 991

Query: 63   LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFM 106
            + K L+  P+K+ +W   +P A+ I IY E  +   R  P  ++
Sbjct: 992  MEKGLRMYPLKLVWWFPAIPFALAIFIYDETRRFYLRRNPGGWL 1035

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium ions, providing the energy for active transport of various nutrients.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 9

>sp|P17326|AT1A_ARTSF Sodium/potassium-transporting ATPase subunit alpha-A OS=Artemia franciscana PE=2 SV=1

 Score =  109 bits (273), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 51/104 (49%), Positives = 69/104 (66%)

Query: 3   LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY 62
           LE TC TA+FISIVI Q   LI+CKTR  S++QQ M N  LN  LVFE  VA  LSY+P 
Sbjct: 887 LEYTCHTAFFISIVIVQWTDLIICKTRRLSLFQQGMKNGTLNFALVFETCVAAFLSYTPG 946

Query: 63  LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFM 106
           ++K L+  P+K+ +W  P+P ++LI++Y E  K + R  P  F+
Sbjct: 947 MDKGLRMYPLKIWWWFPPMPFSLLILVYDECRKFLMRRNPGGFL 990

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium ions, providing the energy for active transport of various nutrients.

Artemia franciscana (taxid: 6661)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 9

>sp|P28774|AT1B_ARTSF Sodium/potassium-transporting ATPase subunit alpha-B OS=Artemia franciscana PE=2 SV=1

 Score =  107 bits (268), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/104 (49%), Positives = 69/104 (66%)

Query: 3   LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY 62
           LES+C TAYF+SIVI Q A LI+ KTR NS++QQ M N +LN  LVFE  +A  LSY+P 
Sbjct: 895 LESSCHTAYFVSIVIVQWADLIISKTRRNSVFQQGMRNNILNFALVFETCLAAFLSYTPG 954

Query: 63  LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFM 106
           ++K L+  P+K+ +W   LP + LI +Y E  K I R  P  ++
Sbjct: 955 MDKGLRMYPLKINWWFPALPFSFLIFVYDEARKFILRRNPGGWV 998

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium ions, providing the energy for active transport of various nutrients.

Artemia franciscana (taxid: 6661)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 9

>sp|Q64541|AT1A4_RAT Sodium/potassium-transporting ATPase subunit alpha-4 OS=Rattus norvegicus GN=Atp1a4 PE=2 SV=1

 Score =  103 bits (257), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/104 (49%), Positives = 70/104 (67%)

Query: 3    LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY 62
            +E TCQTA+FISIVI Q A LI+CKTR NS+++Q M N VL  GL+ E ++A  LSY P 
Sbjct: 919  VEFTCQTAFFISIVIVQWADLIICKTRRNSLFKQGMKNKVLIFGLLEETILAACLSYIPG 978

Query: 63   LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFM 106
            ++  L+  P+K+ +W   LP +VLI IY E  K+I R  P  ++
Sbjct: 979  MDVALRMYPLKINWWFCALPYSVLIFIYDEVRKLIIRRRPGGWL 1022

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium ions, providing the energy for active transport of various nutrients. Plays a role in sperm motility.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 9

>sp|Q9WV27|AT1A4_MOUSE Sodium/potassium-transporting ATPase subunit alpha-4 OS=Mus musculus GN=Atp1a4 PE=1 SV=3

 Score =  102 bits (253), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 49/104 (47%), Positives = 70/104 (67%)

Query: 3    LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY 62
            +E TCQTA+FISIVI Q A LI+CKTR NS+++Q M N +L  GL+ E ++A  LSY P 
Sbjct: 923  VEFTCQTAFFISIVIVQWADLIICKTRRNSLFKQGMKNKILIFGLLEETVLAAFLSYVPG 982

Query: 63   LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFM 106
            ++  L+  P+K+ +W   LP +VLI +Y E  K+I R  P  ++
Sbjct: 983  MDVSLRMYPLKINWWFCALPYSVLIFVYDEIRKLIIRRRPGGWL 1026

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium ions, providing the energy for active transport of various nutrients. Plays a role in sperm motility.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 9

>sp|Q13733|AT1A4_HUMAN Sodium/potassium-transporting ATPase subunit alpha-4 OS=Homo sapiens GN=ATP1A4 PE=1 SV=3

 Score =  101 bits (251), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/104 (43%), Positives = 73/104 (70%)

Query: 3    LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY 62
            +E TCQTA+F++IV+ Q A LI+ KTR NS++QQ M N VL  G++ E L+A  LSY+P 
Sbjct: 920  VEFTCQTAFFVTIVVVQWADLIISKTRRNSLFQQGMRNKVLIFGILEETLLAAFLSYTPG 979

Query: 63   LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFM 106
            ++  L+  P+K+ +WL  +P ++LI +Y E  K++ R +P+ ++
Sbjct: 980  MDVALRMYPLKITWWLCAIPYSILIFVYDEIRKLLIRQHPDGWV 1023

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium ions, providing the energy for active transport of various nutrients. Plays a role in sperm motility.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 9

>sp|P35317|AT1A_HYDVU Sodium/potassium-transporting ATPase subunit alpha OS=Hydra vulgaris PE=2 SV=1

 Score =  100 bits (250), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/104 (44%), Positives = 66/104 (63%)

Query: 3    LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY 62
            +E TCQTA+F +IV+ Q A LI+ KTR  S++QQ M NW LN GL FE  +A  L Y+P 
Sbjct: 922  IELTCQTAFFTTIVVVQWADLIISKTRRLSLFQQGMTNWFLNFGLFFETALAAFLQYTPG 981

Query: 63   LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFM 106
            +N  L+ RP+   +WL  LP ++LI +Y E  + + R  P  ++
Sbjct: 982  VNTGLRLRPMNFTWWLPGLPFSLLIFVYDEIRRYLLRKNPGGWV 1025

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium ions, providing the energy for active transport of various nutrients.

Hydra vulgaris (taxid: 6087)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 9

>sp|P06686|AT1A2_RAT Sodium/potassium-transporting ATPase subunit alpha-2 OS=Rattus norvegicus GN=Atp1a2 PE=1 SV=1

 Score =  100 bits (248), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/104 (45%), Positives = 66/104 (63%)

Query: 3    LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY 62
            +E TC TA+F SIV+ Q A LI+CKTR NS++QQ M N +L  GL+ E  +A  LSY P 
Sbjct: 911  VEFTCHTAFFASIVVVQWADLIICKTRRNSVFQQGMKNKILIFGLLEETALAAFLSYCPG 970

Query: 63   LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFM 106
            +   L+  P+K+ +W    P ++LI IY E  K+I R YP  ++
Sbjct: 971  MGVALRMYPLKVTWWFCAFPYSLLIFIYDEVRKLILRRYPGGWV 1014

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium ions, providing the energy for active transport of various nutrients.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 9

>sp|Q5RCD8|AT1A2_PONAB Sodium/potassium-transporting ATPase subunit alpha-2 OS=Pongo abelii GN=ATP1A2 PE=2 SV=1

 Score =  100 bits (248), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/104 (45%), Positives = 66/104 (63%)

Query: 3    LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY 62
            +E TC TA+F SIV+ Q A LI+CKTR NS++QQ M N +L  GL+ E  +A  LSY P 
Sbjct: 911  VEFTCHTAFFASIVVVQWADLIICKTRRNSVFQQGMKNKILIFGLLEETALAAFLSYCPG 970

Query: 63   LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFM 106
            +   L+  P+K+ +W    P ++LI IY E  K+I R YP  ++
Sbjct: 971  MGVALRMYPLKVTWWFCAFPYSLLIFIYDEVRKLILRRYPGGWV 1014

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium, providing the energy for active transport of various nutrients.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 9

>sp|D2WKD8|AT1A2_PIG Sodium/potassium-transporting ATPase subunit alpha-2 OS=Sus scrofa GN=ATP1A2 PE=1 SV=1

 Score =  100 bits (248), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/104 (45%), Positives = 66/104 (63%)

Query: 3    LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY 62
            +E TC TA+F SIV+ Q A LI+CKTR NS++QQ M N +L  GL+ E  +A  LSY P 
Sbjct: 911  VEFTCHTAFFASIVVVQWADLIICKTRRNSVFQQGMKNKILIFGLLEETALAAFLSYCPG 970

Query: 63   LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFM 106
            +   L+  P+K+ +W    P ++LI IY E  K+I R YP  ++
Sbjct: 971  MGVALRMYPLKVTWWFCAFPYSLLIFIYDEVRKLILRRYPGGWV 1014

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium, providing the energy for active transport of various nutrients.

Sus scrofa (taxid: 9823)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
407731560	1005	Na+,K+ ATPase alpha-subunit 2 [Aphis ner	0.982	0.109	0.518	6e-27
306441398	673	Na+/K+-ATPase alpha subunit [Litopenaeus	0.928	0.154	0.538	6e-25
365919327	1011	Na+/K+-ATPase alpha subunit [Litopenaeus	0.928	0.102	0.538	6e-25
307645734	1038	Na+/K+-ATPase alpha subunit [Fenneropena	0.928	0.100	0.538	1e-24
157690439	1011	sodium/potassium-transporting ATPase sub	0.928	0.102	0.538	1e-24
89032997	1038	Na+/K+-ATPase alpha subunit [Penaeus mon	0.928	0.100	0.538	1e-24
307212775	968	Sodium/potassium-transporting ATPase sub	0.892	0.103	0.56	1e-24
321460059	1016	alpha subunit of putative Na+/K+ ATPase	0.928	0.102	0.519	3e-24
383852292	1001	PREDICTED: sodium/potassium-transporting	0.919	0.102	0.466	5e-24
110755533	997	PREDICTED: sodium/potassium-transporting	0.919	0.103	0.475	5e-24

>gi|407731560|gb|AFU25666.1| Na+,K+ ATPase alpha-subunit 2 [Aphis nerii]

 Score =  124 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 57/110 (51%), Positives = 75/110 (68%)

Query: 3    LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY 62
            LE TC TA+FI+IV+ Q A LI+CKTRYNSI  Q M+NWVLN G+VFE L A  +SY P 
Sbjct: 896  LEYTCHTAFFIAIVVVQWADLIICKTRYNSICHQGMDNWVLNFGMVFETLAACFVSYCPG 955

Query: 63   LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFMAHHLTF 112
            + +VLKT PVK ++WL  LP AV+I +Y E  +   R +P  ++  H  +
Sbjct: 956  MTEVLKTYPVKAEWWLPGLPFAVVIFVYDECRRFWLRTHPGGWVERHTYY 1005

Source: Aphis nerii

Species: Aphis nerii

Genus: Aphis

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|306441398|gb|ADM87522.1| Na+/K+-ATPase alpha subunit [Litopenaeus vannamei]

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 56/104 (53%), Positives = 69/104 (66%)

Query: 3   LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY 62
           LE TC TA+F SIVI Q A LI+CKTR NSI  Q M NWVLN GLVFE  +A  LSY+P 
Sbjct: 564 LEYTCHTAFFTSIVIVQWADLIICKTRRNSIVHQGMKNWVLNFGLVFETTLAAFLSYTPG 623

Query: 63  LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFM 106
           ++K L+  P+K  +WL  LP ++LI IY E  + I R  P  +M
Sbjct: 624 MDKGLRMYPLKFYWWLPALPFSILIFIYDEIRRFILRRNPGGWM 667

Source: Litopenaeus vannamei

Species: Litopenaeus vannamei

Genus: Litopenaeus

Family: Penaeidae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|365919327|gb|AEX07319.1| Na+/K+-ATPase alpha subunit [Litopenaeus stylirostris]

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 56/104 (53%), Positives = 69/104 (66%)

Query: 3    LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY 62
            LE TC TA+F SIVI Q A LI+CKTR NSI  Q M NWVLN GLVFE  +A  LSY+P 
Sbjct: 902  LEYTCHTAFFTSIVIVQWADLIICKTRRNSIVHQGMKNWVLNFGLVFETTLAAFLSYTPG 961

Query: 63   LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFM 106
            ++K L+  P+K  +WL  LP ++LI IY E  + I R  P  +M
Sbjct: 962  MDKGLRMYPLKFYWWLPALPFSILIFIYDEIRRFILRRNPGGWM 1005

Source: Litopenaeus stylirostris

Species: Litopenaeus stylirostris

Genus: Litopenaeus

Family: Penaeidae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307645734|gb|ADN83843.1| Na+/K+-ATPase alpha subunit [Fenneropenaeus indicus] gi|309751850|gb|ADO84689.1| Na/K ATPase alpha subunit [Fenneropenaeus indicus] gi|326936820|gb|AEA11482.1| Na+/K+-ATPase alpha subunit [Fenneropenaeus indicus]

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 56/104 (53%), Positives = 69/104 (66%)

Query: 3    LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY 62
            LE TC TA+F SIVI Q A LI+CKTR NSI  Q M NWVLN GLVFE  +A  LSY+P 
Sbjct: 929  LEYTCHTAFFTSIVIVQWADLIICKTRRNSIVHQGMKNWVLNFGLVFETTLAAFLSYTPG 988

Query: 63   LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFM 106
            ++K L+  P+K  +WL  LP ++LI IY E  + I R  P  +M
Sbjct: 989  MDKGLRMYPLKFYWWLPALPFSLLIFIYDEIRRFILRRNPGGWM 1032

Source: Fenneropenaeus indicus

Species: Fenneropenaeus indicus

Genus: Fenneropenaeus

Family: Penaeidae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157690439|gb|ABV65906.1| sodium/potassium-transporting ATPase subunit alpha [Penaeus monodon]

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 56/104 (53%), Positives = 69/104 (66%)

Query: 3    LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY 62
            LE TC TA+F SIVI Q A LI+CKTR NSI  Q M NWVLN GLVFE  +A  LSY+P 
Sbjct: 902  LEYTCHTAFFTSIVIVQWADLIICKTRRNSIVHQGMKNWVLNFGLVFETTLAAFLSYTPG 961

Query: 63   LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFM 106
            ++K L+  P+K  +WL  LP ++LI IY E  + I R  P  +M
Sbjct: 962  MDKGLRMYPLKFYWWLPALPFSLLIFIYDEIRRFILRRNPGGWM 1005

Source: Penaeus monodon

Species: Penaeus monodon

Genus: Penaeus

Family: Penaeidae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|89032997|gb|ABD59803.1| Na+/K+-ATPase alpha subunit [Penaeus monodon] gi|89032999|gb|ABD59804.1| Na+/K+-ATPase alpha subunit [Penaeus monodon] gi|237510760|gb|ACQ99366.1| Na+/K+-ATPase alpha subunit [Penaeus monodon]

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 56/104 (53%), Positives = 69/104 (66%)

Query: 3    LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY 62
            LE TC TA+F SIVI Q A LI+CKTR NSI  Q M NWVLN GLVFE  +A  LSY+P 
Sbjct: 929  LEYTCHTAFFTSIVIVQWADLIICKTRRNSIVHQGMKNWVLNFGLVFETTLAAFLSYTPG 988

Query: 63   LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFM 106
            ++K L+  P+K  +WL  LP ++LI IY E  + I R  P  +M
Sbjct: 989  MDKGLRMYPLKFYWWLPALPFSLLIFIYDEIRRFILRRNPGGWM 1032

Source: Penaeus monodon

Species: Penaeus monodon

Genus: Penaeus

Family: Penaeidae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307212775|gb|EFN88446.1| Sodium/potassium-transporting ATPase subunit alpha [Harpegnathos saltator]

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 56/100 (56%), Positives = 75/100 (75%)

Query: 3   LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY 62
           LE TC TA+F+SIVIAQ A  +VCKTR NS+ +Q M+NWVLN GL+FEI VA ++SY+P+
Sbjct: 859 LEYTCHTAFFVSIVIAQWADAMVCKTRRNSLLRQGMSNWVLNTGLLFEIGVACLVSYTPH 918

Query: 63  LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYP 102
           +++VLKT P+K + WL  +P A+LI+IY E  K   R  P
Sbjct: 919 MDRVLKTYPLKPELWLPGVPYAILILIYEESRKWWIRRNP 958

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321460059|gb|EFX71105.1| alpha subunit of putative Na+/K+ ATPase [Daphnia pulex]

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 54/104 (51%), Positives = 71/104 (68%)

Query: 3    LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY 62
            LE TC TA+F+SIVI Q   LI+CKTR NS++QQ M N VL  GL FE  VA +LSY+P 
Sbjct: 907  LEFTCHTAFFVSIVIVQWTDLIICKTRRNSLFQQGMRNHVLTFGLFFETAVACLLSYTPG 966

Query: 63   LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFM 106
            ++K L+  P+K  +WL  +P AVLI +Y E  K I R +PN ++
Sbjct: 967  MDKGLRMYPLKFHWWLPAMPFAVLIFVYDEIRKYIIRRHPNGWV 1010

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852292|ref|XP_003701662.1| PREDICTED: sodium/potassium-transporting ATPase subunit alpha-like [Megachile rotundata]

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 48/103 (46%), Positives = 76/103 (73%)

Query: 3   LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY 62
           LE TC TA+F+SIVI Q A +++CKTR NS++   M+NWVLN G++FE++VA+V+ Y+PY
Sbjct: 892 LEYTCHTAFFVSIVIVQVADVMICKTRRNSLFHHGMHNWVLNAGILFELVVAYVVCYAPY 951

Query: 63  LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSF 105
           ++++L T  +K ++WL  +P AV+I++Y E  K+  R  P  +
Sbjct: 952 MDQILNTYALKFEWWLLAVPYAVIILMYDELRKLWVRRNPRGW 994

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110755533|ref|XP_394389.3| PREDICTED: sodium/potassium-transporting ATPase subunit alpha-like [Apis mellifera]

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 49/103 (47%), Positives = 75/103 (72%)

Query: 3   LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY 62
           LE TC TA+F+SIVI Q A +++CKTR NS+++Q MNNWVLN G++FE++VA V+ Y+PY
Sbjct: 888 LEYTCHTAFFVSIVIVQVADVMICKTRRNSLFRQGMNNWVLNFGIIFELVVACVVCYAPY 947

Query: 63  LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSF 105
           ++ +L+T P+  ++WL  +P A++I  Y E  K+  R  P  +
Sbjct: 948 MDVILRTYPLLAQWWLPGIPYALIIFTYDELRKLWVRKNPEGW 990

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
FB|FBgn0002921	1041	Atpalpha "Na pump alpha subuni	0.928	0.099	0.5	9.8e-22
WB|WBGene00001137	996	eat-6 [Caenorhabditis elegans	0.928	0.104	0.461	8.4e-21
UNIPROTKB|E1B8N5	1030	ATP1A4 "Uncharacterized protei	0.928	0.100	0.461	3.8e-20
UNIPROTKB|F1PJF0	1031	ATP1A4 "Uncharacterized protei	0.928	0.100	0.451	3.9e-20
RGD|2318203	862	LOC100365885 "sodium/potassium	0.928	0.120	0.490	7.8e-20
RGD|61952	1028	Atp1a4 "ATPase, Na+/K+ transpo	0.928	0.101	0.490	1e-19
UNIPROTKB|F1LMF3	1030	LOC100365885 "Protein LOC10036	0.928	0.100	0.490	1e-19
UNIPROTKB|Q4JI17	210	Q4JI17 "Na+/K+ ATPase alpha su	0.928	0.495	0.451	2.5e-19
UNIPROTKB|I3L8L8	1031	ATP1A4 "Uncharacterized protei	0.928	0.100	0.461	2.8e-19
MGI|MGI:1351335	1032	Atp1a4 "ATPase, Na+/K+ transpo	0.928	0.100	0.471	2.8e-19

FB|FBgn0002921 Atpalpha "Na pump alpha subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 266 (98.7 bits), Expect = 9.8e-22, P = 9.8e-22
 Identities = 52/104 (50%), Positives = 68/104 (65%)

Query:     3 LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY 62
             LE TC TA+FISIV+ Q A LI+CKTR NSI+QQ M NW LN GLVFE ++A  LSY P 
Sbjct:   932 LEYTCHTAFFISIVVVQWADLIICKTRRNSIFQQGMRNWALNFGLVFETVLAAFLSYCPG 991

Query:    63 LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFM 106
             + K L+  P+K+ +W   +P A+ I IY E  +   R  P  ++
Sbjct:   992 MEKGLRMYPLKLVWWFPAIPFALAIFIYDETRRFYLRRNPGGWL 1035

GO:0005391 "sodium:potassium-exchanging ATPase activity" evidence=ISS;NAS;IMP

GO:0009612 "response to mechanical stimulus" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISS;IDA

GO:0001700 "embryonic development via the syncytial blastoderm" evidence=IMP

GO:0006812 "cation transport" evidence=NAS;IDA

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0005890 "sodium:potassium-exchanging ATPase complex" evidence=IC;ISS;NAS

GO:0008324 "cation transmembrane transporter activity" evidence=IDA

GO:0007626 "locomotory behavior" evidence=IMP

GO:0035159 "regulation of tube length, open tracheal system" evidence=IMP

GO:0035158 "regulation of tube diameter, open tracheal system" evidence=IMP

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0050905 "neuromuscular process" evidence=IMP

GO:0001894 "tissue homeostasis" evidence=IMP

GO:0008344 "adult locomotory behavior" evidence=IMP

GO:0005918 "septate junction" evidence=IDA

GO:0019991 "septate junction assembly" evidence=IMP

GO:0035152 "regulation of tube architecture, open tracheal system" evidence=TAS

GO:0046872 "metal ion binding" evidence=IEA

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007268 "synaptic transmission" evidence=IDA

GO:0051124 "synaptic growth at neuromuscular junction" evidence=IMP

GO:0016323 "basolateral plasma membrane" evidence=IDA

WB|WBGene00001137 eat-6 [Caenorhabditis elegans (taxid:6239)]

 Score = 257 (95.5 bits), Expect = 8.4e-21, P = 8.4e-21
 Identities = 48/104 (46%), Positives = 68/104 (65%)

Query:     3 LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY 62
             LE TCQTAYF+SIV+ Q A LI+ KTR NS+ QQ M+NW LN GLVFE  +A+ + Y P 
Sbjct:   887 LEYTCQTAYFVSIVVVQWADLIISKTRRNSLVQQGMSNWTLNFGLVFETALAWFMCYCPG 946

Query:    63 LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFM 106
             L+  L+   ++  +W   LP ++LI +Y E  + + R YP  ++
Sbjct:   947 LDNGLRMYGLRFSWWFCALPFSILIFVYDEIRRFLIRRYPGGWV 990

GO:0016020 "membrane" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006812 "cation transport" evidence=IEA

GO:0015662 "ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism" evidence=IEA

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0015077 "monovalent inorganic cation transmembrane transporter activity" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0030163 "protein catabolic process" evidence=IMP

GO:0006813 "potassium ion transport" evidence=ISS;IMP

GO:0006814 "sodium ion transport" evidence=ISS;IMP

GO:0006937 "regulation of muscle contraction" evidence=IMP

GO:0042391 "regulation of membrane potential" evidence=IMP

GO:0001508 "regulation of action potential" evidence=IMP

GO:0010248 "establishment or maintenance of transmembrane electrochemical gradient" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0005886 "plasma membrane" evidence=ISS

GO:0005391 "sodium:potassium-exchanging ATPase activity" evidence=ISS;IMP

UNIPROTKB|E1B8N5 ATP1A4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 251 (93.4 bits), Expect = 3.8e-20, P = 3.8e-20
 Identities = 48/104 (46%), Positives = 71/104 (68%)

Query:     3 LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY 62
             LE TCQTA+F+SIVI Q A LI+CKTR NSI+QQ M N +L  G++ E ++A  LSY+P 
Sbjct:   921 LEFTCQTAFFVSIVIVQWADLIICKTRRNSIFQQGMKNKILIFGILEETILAAFLSYTPG 980

Query:    63 LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFM 106
             ++  L+  P+K+ +W    P ++LI +Y E  ++I R YP  ++
Sbjct:   981 MDVALRMYPLKITWWFCATPYSLLIFVYDEIRRLIIRRYPGGWV 1024

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0030641 "regulation of cellular pH" evidence=IEA

GO:0030317 "sperm motility" evidence=IEA

GO:0009566 "fertilization" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0005391 "sodium:potassium-exchanging ATPase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006754 "ATP biosynthetic process" evidence=IEA

UNIPROTKB|F1PJF0 ATP1A4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 251 (93.4 bits), Expect = 3.9e-20, P = 3.9e-20
 Identities = 47/104 (45%), Positives = 71/104 (68%)

Query:     3 LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY 62
             LE TCQTA+F+SIV+ Q A LI+CKTR NS++QQ M N +L  G++ E  +A  LSY+P 
Sbjct:   922 LEFTCQTAFFVSIVVVQWADLIICKTRRNSVFQQGMKNNILIFGIMEETFLAAFLSYTPG 981

Query:    63 LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFM 106
             ++  L+  P+K+ +WL  +P +VLI +Y E  K+  R +P  ++
Sbjct:   982 MDVALRMYPLKLPWWLCAIPYSVLIFVYDEIRKLTIRRHPGGWL 1025

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0015077 "monovalent inorganic cation transmembrane transporter activity" evidence=IEA

GO:0006754 "ATP biosynthetic process" evidence=IEA

RGD|2318203 LOC100365885 "sodium/potassium-transporting ATPase subunit alpha-4-like" [Rattus norvegicus (taxid:10116)]

 Score = 247 (92.0 bits), Expect = 7.8e-20, P = 7.8e-20
 Identities = 51/104 (49%), Positives = 70/104 (67%)

Query:     3 LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY 62
             +E TCQTA+FISIVI Q A LI+CKTR NS+++Q M N VL  GL+ E ++A  LSY P 
Sbjct:   753 VEFTCQTAFFISIVIVQWADLIICKTRRNSLFKQGMKNKVLIFGLLEETILAACLSYIPG 812

Query:    63 LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFM 106
             ++  L+  P+K+ +W   LP +VLI IY E  K+I R  P  ++
Sbjct:   813 MDVALRMYPLKINWWFCALPYSVLIFIYDEVRKLIIRRRPGGWL 856

GO:0005524 "ATP binding" evidence=IEA

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0015077 "monovalent inorganic cation transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|61952 Atp1a4 "ATPase, Na+/K+ transporting, alpha 4 polypeptide" [Rattus norvegicus (taxid:10116)]

 Score = 247 (92.0 bits), Expect = 1.0e-19, P = 1.0e-19
 Identities = 51/104 (49%), Positives = 70/104 (67%)

Query:     3 LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY 62
             +E TCQTA+FISIVI Q A LI+CKTR NS+++Q M N VL  GL+ E ++A  LSY P 
Sbjct:   919 VEFTCQTAFFISIVIVQWADLIICKTRRNSLFKQGMKNKVLIFGLLEETILAACLSYIPG 978

Query:    63 LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFM 106
             ++  L+  P+K+ +W   LP +VLI IY E  K+I R  P  ++
Sbjct:   979 MDVALRMYPLKINWWFCALPYSVLIFIYDEVRKLIIRRRPGGWL 1022

GO:0005391 "sodium:potassium-exchanging ATPase activity" evidence=ISO;IDA;TAS

GO:0005524 "ATP binding" evidence=IEA

GO:0005890 "sodium:potassium-exchanging ATPase complex" evidence=TAS

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0006813 "potassium ion transport" evidence=TAS

GO:0006814 "sodium ion transport" evidence=ISO;TAS

GO:0007283 "spermatogenesis" evidence=IEP;ISO

GO:0009566 "fertilization" evidence=IEA;ISO

GO:0030317 "sperm motility" evidence=ISO;ISS;IDA

GO:0030641 "regulation of cellular pH" evidence=ISO;ISS;IDA

GO:0042391 "regulation of membrane potential" evidence=IEA;ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1LMF3 LOC100365885 "Protein LOC100365885" [Rattus norvegicus (taxid:10116)]

 Score = 247 (92.0 bits), Expect = 1.0e-19, P = 1.0e-19
 Identities = 51/104 (49%), Positives = 70/104 (67%)

Query:     3 LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY 62
             +E TCQTA+FISIVI Q A LI+CKTR NS+++Q M N VL  GL+ E ++A  LSY P 
Sbjct:   921 VEFTCQTAFFISIVIVQWADLIICKTRRNSLFKQGMKNKVLIFGLLEETILAACLSYIPG 980

Query:    63 LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFM 106
             ++  L+  P+K+ +W   LP +VLI IY E  K+I R  P  ++
Sbjct:   981 MDVALRMYPLKINWWFCALPYSVLIFIYDEVRKLIIRRRPGGWL 1024

GO:0005524 "ATP binding" evidence=IEA

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0015077 "monovalent inorganic cation transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q4JI17 Q4JI17 "Na+/K+ ATPase alpha subunit" [Ictalurus punctatus (taxid:7998)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 47/104 (45%), Positives = 65/104 (62%)

Query:     3 LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY 62
             +E TC TA+FISIV+ Q A LI+CKTR NS++QQ M N +L  GL  E  +A  LSY P 
Sbjct:   101 VEFTCHTAFFISIVVVQWADLIICKTRRNSVFQQGMKNKILIFGLFEETALAAFLSYCPG 160

Query:    63 LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFM 106
             ++  L+  P+K  +W    P ++LI IY E  K+I R  P  ++
Sbjct:   161 MDVALRMYPLKPNWWFCAFPYSLLIFIYDEIRKLIIRRSPGGWV 204

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

UNIPROTKB|I3L8L8 ATP1A4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 243 (90.6 bits), Expect = 2.8e-19, P = 2.8e-19
 Identities = 48/104 (46%), Positives = 70/104 (67%)

Query:     3 LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY 62
             +E TC TA+F+SIVI Q A LI+CKTR NS++QQ M N +L  G++ E L+A  LSY+P 
Sbjct:   922 VEFTCHTAFFVSIVIVQWADLIICKTRRNSVFQQGMKNKILIFGILEETLLAAFLSYTPG 981

Query:    63 LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFM 106
             ++  L+  P+K+ +WL   P ++LI IY E  K I R +P  ++
Sbjct:   982 MDVALRMYPLKITWWLCATPYSLLIFIYDEVRKFIIRGHPGGWL 1025

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0030641 "regulation of cellular pH" evidence=IEA

GO:0030317 "sperm motility" evidence=IEA

GO:0009566 "fertilization" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0005391 "sodium:potassium-exchanging ATPase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006754 "ATP biosynthetic process" evidence=IEA

MGI|MGI:1351335 Atp1a4 "ATPase, Na+/K+ transporting, alpha 4 polypeptide" [Mus musculus (taxid:10090)]

 Score = 243 (90.6 bits), Expect = 2.8e-19, P = 2.8e-19
 Identities = 49/104 (47%), Positives = 70/104 (67%)

Query:     3 LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY 62
             +E TCQTA+FISIVI Q A LI+CKTR NS+++Q M N +L  GL+ E ++A  LSY P 
Sbjct:   923 VEFTCQTAFFISIVIVQWADLIICKTRRNSLFKQGMKNKILIFGLLEETVLAAFLSYVPG 982

Query:    63 LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFM 106
             ++  L+  P+K+ +W   LP +VLI +Y E  K+I R  P  ++
Sbjct:   983 MDVSLRMYPLKINWWFCALPYSVLIFVYDEIRKLIIRRRPGGWL 1026

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005391 "sodium:potassium-exchanging ATPase activity" evidence=ISO;IMP

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005886 "plasma membrane" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006812 "cation transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IMP

GO:0007283 "spermatogenesis" evidence=IMP

GO:0009566 "fertilization" evidence=IMP

GO:0015077 "monovalent inorganic cation transmembrane transporter activity" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0030317 "sperm motility" evidence=ISO;IMP

GO:0030641 "regulation of cellular pH" evidence=ISO

GO:0035725 "sodium ion transmembrane transport" evidence=ISO

GO:0042391 "regulation of membrane potential" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	112
TIGR01106	997	TIGR01106, ATPase-IIC_X-K, sodium or proton efflux	5e-35
pfam00689	175	pfam00689, Cation_ATPase_C, Cation transporting AT	1e-15
COG0474	917	COG0474, MgtA, Cation transport ATPase [Inorganic	5e-05

>gnl|CDD|130176 TIGR01106, ATPase-IIC_X-K, sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit

 Score =  126 bits (317), Expect = 5e-35
 Identities = 45/103 (43%), Positives = 63/103 (61%)

Query: 3   LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY 62
           +E TC TA+F+SIV+ Q A LI+CKTR NS++QQ M N +L  GL  E  +A  LSY P 
Sbjct: 888 VEFTCHTAFFVSIVVVQWADLIICKTRRNSVFQQGMKNKILIFGLFEETALAAFLSYCPG 947

Query: 63  LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSF 105
           +   L+  P+K  +W    P ++LI +Y E  K+I R  P  +
Sbjct: 948 MGVALRMYPLKPTWWFCAFPYSLLIFVYDEIRKLIIRRNPGGW 990

This model describes the P-type ATPases responsible for the exchange of either protons or sodium ions for potassium ions across the plasma membranes of eukaryotes. Unlike most other P-type ATPases, members of this subfamily require a beta subunit for activity. This model encompasses eukaryotes and consists of two functional types, a Na/K antiporter found widely distributed in eukaryotes and a H/K antiporter found only in vertebrates. The Na+ or H+/K+ antiporter P-type ATPases have been characterized as Type IIC based on a published phylogenetic analysis. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps [Energy metabolism, ATP-proton motive force interconversion]. Length = 997

>gnl|CDD|216063 pfam00689, Cation_ATPase_C, Cation transporting ATPase, C-terminus

 Score = 68.4 bits (168), Expect = 1e-15
 Identities = 21/98 (21%), Positives = 53/98 (54%), Gaps = 1/98 (1%)

Query: 1   MNLESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMN-NWVLNIGLVFEILVAFVLSY 59
           ++     QT  F ++V++Q    +  ++   S+++  +  N +L + ++  +L+  ++ Y
Sbjct: 78  ISESGLAQTMAFNTLVLSQLFNALNARSLRRSLFKIGLFSNKLLLLAVLLSLLLQLLIIY 137

Query: 60  SPYLNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKII 97
            P L  V  T P+ ++ WL  L +A+++++  E  K++
Sbjct: 138 VPGLQAVFGTTPLSLEQWLIVLGLALVVLLVVELRKLL 175

Members of this families are involved in Na+/K+, H+/K+, Ca++ and Mg++ transport. This family represents 5 transmembrane helices. Length = 175

>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]

 Score = 40.4 bits (95), Expect = 5e-05
 Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 4/96 (4%)

Query: 8   QTAYFISIVIAQCAALIVCKTRYNSIYQQKM-NNWVLNIGLVFEILVAFVLSYSPYLN-K 65
           QT  F  +V+ Q    +  ++R        + +N  L + L+  I++  ++ + P LN K
Sbjct: 820 QTTAFTVLVLIQLLLTLAVRSRGRPFLSSLLFSNKYLWLALLVIIILQLLIIFLPPLNLK 879

Query: 66  VLKTRPVKMKYWLTPLPIAV--LIVIYGEFGKIISR 99
           + +  P+ +  WL  + +A+  L ++  E  K+ SR
Sbjct: 880 IFQPTPLSLFEWLIAIAVALLLLYIVVSELYKLKSR 915

Length = 917

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	112
PF00689	182	Cation_ATPase_C: Cation transporting ATPase, C-ter	99.82
TIGR01106	997	ATPase-IIC_X-K sodium or proton efflux -- potassiu	99.8
TIGR01522	884	ATPase-IIA2_Ca golgi membrane calcium-translocatin	99.76
TIGR01116	917	ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium	99.76
TIGR01523	1053	ATPase-IID_K-Na potassium and/or sodium efflux P-t	99.74
KOG0203|consensus	1019		99.72
KOG0202|consensus	972		99.65
TIGR01517	941	ATPase-IIB_Ca plasma-membrane calcium-translocatin	99.45
PRK15122	903	magnesium-transporting ATPase; Provisional	99.43
TIGR01524	867	ATPase-IIIB_Mg magnesium-translocating P-type ATPa	99.2
PRK10517	902	magnesium-transporting ATPase MgtA; Provisional	99.12
KOG0204|consensus	1034		98.74
COG0474	917	MgtA Cation transport ATPase [Inorganic ion transp	98.69
TIGR01657	1054	P-ATPase-V P-type ATPase of unknown pump specifici	97.3
TIGR01647	755	ATPase-IIIA_H plasma-membrane proton-efflux P-type	96.63

>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.82  E-value=1.2e-19  Score=124.00  Aligned_cols=93  Identities=29%  Similarity=0.529  Sum_probs=85.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhcCCCcccc-ccc-ccHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCcchhHHHHH
Q psy6872           5 STCQTAYFISIVIAQCAALIVCKTRYNSIYQ-QKM-NNWVLNIGLVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLTPLP   82 (112)
Q Consensus         5 ~~a~t~~F~~lv~~ql~~~~~~Rs~~~~~~~-~~~-~N~~l~~~~~~~~~l~~~~~~vp~l~~~f~~~pl~~~~w~~~~~   82 (112)
                      .++||++|.+++++|++|.+++|+++++.++ .+. +|++++.+++++++++++++|+|+++++|++.|+++.+|+.+++
T Consensus        88 ~~a~T~~F~~lv~~q~~~~~~~r~~~~~~~~~~~~~~N~~l~~~~~~~~~l~~~i~~~P~~~~~f~~~~l~~~~w~~~l~  167 (182)
T PF00689_consen   88 AQAQTMAFTALVLSQLFNAFNCRSRRRSVFRFRGIFSNKWLLIAILISIALQILIVYVPGLNRIFGTAPLPLWQWLICLA  167 (182)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSSSSSTCTT-STGGGSHHHHHHHHHHHHHHHHHHHSTTHHHHST----THHHHHCHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhcccccccccceecccccccchHHHHHHHHHHHHHHHhcchhhHhhhcccCCCHHHHHHHHH
Confidence            4699999999999999999999999999998 777 99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy6872          83 IAVLIVIYGEFGKII   97 (112)
Q Consensus        83 ~~~~~~~~~e~~K~~   97 (112)
                      .++..+++.|++|++
T Consensus       168 ~~~~~~~~~ei~K~i  182 (182)
T PF00689_consen  168 LALLPFIVDEIRKLI  182 (182)
T ss_dssp             HHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHC
Confidence            999999999999975

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....

>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit

Probab=99.80  E-value=5.9e-19  Score=146.32  Aligned_cols=107  Identities=41%  Similarity=0.739  Sum_probs=100.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhcCCCcccccccccHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCcchhHHHHHHHH
Q psy6872           6 TCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLTPLPIAV   85 (112)
Q Consensus         6 ~a~t~~F~~lv~~ql~~~~~~Rs~~~~~~~~~~~N~~l~~~~~~~~~l~~~~~~vp~l~~~f~~~pl~~~~w~~~~~~~~   85 (112)
                      ++||+.|++++++|++|.++||+++.++|+.+++|++++.+++++++++.+++|+|+++++|++.|+++.+|..+++.++
T Consensus       891 ~~~t~~f~~~v~~q~~~~~~~R~~~~~~f~~~~~n~~l~~~~~~~~~l~~~~~~~p~~~~~f~~~~l~~~~w~~~~~~~~  970 (997)
T TIGR01106       891 TCHTAFFVSIVVVQWADLIICKTRRNSVFQQGMKNKILIFGLFEETALAAFLSYCPGMGVALRMYPLKPTWWFCAFPYSL  970 (997)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhccCcccccccCCcCHHHHHHHHHHHHHHHHHHHhhhhHHHhccccCCHHHHHHHHHHHH
Confidence            68999999999999999999999988888766799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCchhhhccC
Q psy6872          86 LIVIYGEFGKIISRLYPNSFMAHHLTF  112 (112)
Q Consensus        86 ~~~~~~e~~K~~~r~~~~~~~~~~~~~  112 (112)
                      +.+++.|++|++.|+++++|+++-+-|
T Consensus       971 ~~~~~~~~~k~~~r~~~~~~~~~~~~~  997 (997)
T TIGR01106       971 LIFVYDEIRKLIIRRNPGGWVEKETYY  997 (997)
T ss_pred             HHHHHHHHHHHHHHhCCcchhhHhhcC
Confidence            999999999999999989999987644

Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.

>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase

Probab=99.76  E-value=7.3e-18  Score=138.52  Aligned_cols=97  Identities=22%  Similarity=0.311  Sum_probs=91.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhcCCCccccccc-ccHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCcchhHHHHHH
Q psy6872           5 STCQTAYFISIVIAQCAALIVCKTRYNSIYQQKM-NNWVLNIGLVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLTPLPI   83 (112)
Q Consensus         5 ~~a~t~~F~~lv~~ql~~~~~~Rs~~~~~~~~~~-~N~~l~~~~~~~~~l~~~~~~vp~l~~~f~~~pl~~~~w~~~~~~   83 (112)
                      .+++|++|.+++++|++|.++||+.+.++|+.+. +|++++++++++++++++++|+|+++++|++.|+++.+|.++++.
T Consensus       786 ~~~~t~~f~~~v~~q~~~~~~~r~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~l~~~~w~~~~~~  865 (884)
T TIGR01522       786 ARDTTMTFTCFVFFDMFNALACRSQTKSVFEIGFFSNRMFNYAVGGSIIGQLLVIYFPPLQSVFQTEALSIKDLLFLLLI  865 (884)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHccCCccccccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            4578999999999999999999999889898776 999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhC
Q psy6872          84 AVLIVIYGEFGKIISRLY  101 (112)
Q Consensus        84 ~~~~~~~~e~~K~~~r~~  101 (112)
                      +++.+++.|++|+++|++
T Consensus       866 ~~~~~~~~~~~k~~~~~~  883 (884)
T TIGR01522       866 TSSVCIVDEIRKKVERSR  883 (884)
T ss_pred             HHHHHHHHHHHHHHHhhc
Confidence            999999999999988664

The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.

>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase

Probab=99.76  E-value=5.5e-18  Score=139.66  Aligned_cols=95  Identities=18%  Similarity=0.352  Sum_probs=90.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhcCCCccccccc-ccHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCcchhHHHHHH
Q psy6872           5 STCQTAYFISIVIAQCAALIVCKTRYNSIYQQKM-NNWVLNIGLVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLTPLPI   83 (112)
Q Consensus         5 ~~a~t~~F~~lv~~ql~~~~~~Rs~~~~~~~~~~-~N~~l~~~~~~~~~l~~~~~~vp~l~~~f~~~pl~~~~w~~~~~~   83 (112)
                      .++||++|.+++++|++|.++||+.++++|+.+. +|++++++++++++++++++|+|+++++|++.|+++.+|+++++.
T Consensus       822 ~~~~t~~f~~~v~~q~~~~~~~r~~~~~~~~~~~~~n~~~~~~~~~~~~l~~~~~~v~~~~~~f~~~~l~~~~w~~~~~~  901 (917)
T TIGR01116       822 QPARTISLSVLVVIEMFNALNALSEDQSLLRMPPWVNKWLIGAICLSMALHFLILYVPFLSRIFGVTPLSLTDWLMVLKL  901 (917)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHcCCcccccccCCccCHHHHHHHHHHHHHHHHHHHhHHHHHHhccCCCCHHHHHHHHHH
Confidence            4689999999999999999999999899898776 999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy6872          84 AVLIVIYGEFGKIISR   99 (112)
Q Consensus        84 ~~~~~~~~e~~K~~~r   99 (112)
                      +++.+++.|++|+++|
T Consensus       902 ~~~~~~~~e~~k~~~~  917 (917)
T TIGR01116       902 SLPVILVDEVLKFFSR  917 (917)
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            9999999999998754

The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.

>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type

Probab=99.74  E-value=2.5e-17  Score=137.22  Aligned_cols=98  Identities=20%  Similarity=0.269  Sum_probs=89.9

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhcCCCcccccc---------------c-ccHHHHHHHHHHHHHHHHHHhhhhhhh-c
Q psy6872           4 ESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQK---------------M-NNWVLNIGLVFEILVAFVLSYSPYLNK-V   66 (112)
Q Consensus         4 ~~~a~t~~F~~lv~~ql~~~~~~Rs~~~~~~~~~---------------~-~N~~l~~~~~~~~~l~~~~~~vp~l~~-~   66 (112)
                      ..+|||++|.+++++|++|+++||+.+.++|+.+               . +|++++++++++++++++++|+|+++. +
T Consensus       935 ~~~a~t~~f~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~l~~~~~~~~~l~~~~~~~p~~~~~~ 1014 (1053)
T TIGR01523       935 VFKARSAAFATMTFCALILAVEVKDFDNSFFNLHGIPDGDSNFKEFFHSIVENKFLAWAIAFAAVSAFPTIYIPVINDDV 1014 (1053)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhcCchhhhhcCccccccccccccccCCccCHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence            3478999999999999999999999998888652               5 999999999999999999999999996 9


Q ss_pred             ccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy6872          67 LKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYP  102 (112)
Q Consensus        67 f~~~pl~~~~w~~~~~~~~~~~~~~e~~K~~~r~~~  102 (112)
                      |++.|+++ +|.++++.++.++++.|++|+++|+.+
T Consensus      1015 f~~~~l~~-~w~~~~~~~~~~~~~~e~~K~~~r~~~ 1049 (1053)
T TIGR01523      1015 FKHKPIGA-EWGLAAAATIAFFFGAEIWKCGKRRLF 1049 (1053)
T ss_pred             hccCCcch-HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999995 999999999999999999999987665

The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.

>KOG0203|consensus

Probab=99.72  E-value=1.1e-18  Score=139.88  Aligned_cols=110  Identities=44%  Similarity=0.771  Sum_probs=106.3

Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHhcCCCcccccccccHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCcchhHHHHH
Q psy6872           3 LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLTPLP   82 (112)
Q Consensus         3 ~~~~a~t~~F~~lv~~ql~~~~~~Rs~~~~~~~~~~~N~~l~~~~~~~~~l~~~~~~vp~l~~~f~~~pl~~~~w~~~~~   82 (112)
                      .|.+++|++|.+++..|+.+.+.|++++.|+|.+|++|+.+..+++...++....+|+|++...+++.|+.+..|...++
T Consensus       910 le~tc~taFfvsIvV~Q~adLii~KTRRnSlfqqGmrN~vl~f~v~~e~~La~fl~y~pg~~~~l~~~pl~~~~wl~a~P  989 (1019)
T KOG0203|consen  910 LEYTCYTAFFISIVVVQWADLIICKTRRNSIFQQGMRNKVLIFAVIFETCLACFLCYCPGVLYALGMYPLKFQWWLVAFP  989 (1019)
T ss_pred             HHHhhhhheeeeehHHhHhhHHhhhcchhHHHHhhhhhhhHHHHHHHHHHHHHHHhcCccHHHHhccCCCCcEEEEeccc
Confidence            46779999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCchhhhccC
Q psy6872          83 IAVLIVIYGEFGKIISRLYPNSFMAHHLTF  112 (112)
Q Consensus        83 ~~~~~~~~~e~~K~~~r~~~~~~~~~~~~~  112 (112)
                      .++.+++.+|+||+++|++|++|+++-+.|
T Consensus       990 ~~ilIfvydE~Rk~~IR~~P~gw~e~etyY 1019 (1019)
T KOG0203|consen  990 FGILIFVYDEVRKLFIRRYPGGWLEKETYY 1019 (1019)
T ss_pred             ceeeeeeHHHHHhHhhhhCCCchhhhhccC
Confidence            999999999999999999999999999877

>KOG0202|consensus

Probab=99.65  E-value=6.5e-17  Score=129.83  Aligned_cols=97  Identities=23%  Similarity=0.400  Sum_probs=93.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhcCCCccccccc-ccHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCcchhHHHHHHH
Q psy6872           6 TCQTAYFISIVIAQCAALIVCKTRYNSIYQQKM-NNWVLNIGLVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLTPLPIA   84 (112)
Q Consensus         6 ~a~t~~F~~lv~~ql~~~~~~Rs~~~~~~~~~~-~N~~l~~~~~~~~~l~~~~~~vp~l~~~f~~~pl~~~~w~~~~~~~   84 (112)
                      .+.||+|..+++-..+|+++|||.++++|..++ .|+|+.+++.++++++.+++|+|+++++|+++|+++.+|+.++.+.
T Consensus       873 ~~~tMa~tv~V~~emfNaL~~~se~~slf~~~~~~N~~l~~ai~~S~~~~f~ilYvp~l~~iFq~~~l~~~ew~~vl~~s  952 (972)
T KOG0202|consen  873 CPLTMALTVLVFIEMFNALNCLSENKSLFTMPPWSNRWLLWAIALSFVLHFLVLYVPPLQRIFQTEPLSLAEWLLVLAIS  952 (972)
T ss_pred             ccceEEEeehhHHHHHHHhhcccCCcceEEecccccHHHHHHHHHHHHhhheEEEechhhhhheecCCcHHHHHHHHHHh
Confidence            466999999999999999999999999999998 9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCC
Q psy6872          85 VLIVIYGEFGKIISRLYP  102 (112)
Q Consensus        85 ~~~~~~~e~~K~~~r~~~  102 (112)
                      ...++.+|+.|++.|+..
T Consensus       953 ~~V~i~dEilK~~~R~~~  970 (972)
T KOG0202|consen  953 SPVIIVDEILKFIARNYF  970 (972)
T ss_pred             hhhhhHHHHHHHHHHhcc
Confidence            999999999999998764

>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase

Probab=99.45  E-value=5.9e-13  Score=110.38  Aligned_cols=90  Identities=16%  Similarity=0.311  Sum_probs=80.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhcCCC-ccccccc-ccHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCcchhHHHHH
Q psy6872           5 STCQTAYFISIVIAQCAALIVCKTRYN-SIYQQKM-NNWVLNIGLVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLTPLP   82 (112)
Q Consensus         5 ~~a~t~~F~~lv~~ql~~~~~~Rs~~~-~~~~~~~-~N~~l~~~~~~~~~l~~~~~~vp~l~~~f~~~pl~~~~w~~~~~   82 (112)
                      .+++|++|.+++++|++|.+++|+.+. ++|+ ++ +|++++.+++++++++  ++++|+++.+|++.|+++.+|..+++
T Consensus       847 ~~~~t~~f~~~v~~~~~~~~~~r~~~~~~~~~-~~~~n~~~~~~~~~~~~l~--~~~~~~~~~~f~~~~l~~~~w~~~~~  923 (941)
T TIGR01517       847 GELNTIVFNTFVLLQLFNEINARKLYERNVFE-GLFKNRIFVTIMGFTFGFQ--VIIVEFGGSFFSTVSLSIEQWIGCVL  923 (941)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHccCCcccccc-cccccHHHHHHHHHHHHHH--HHHHHHHHHHhcccCCCHHHHHHHHH
Confidence            568999999999999999999999875 5565 66 9999999998888888  44667889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy6872          83 IAVLIVIYGEFGKII   97 (112)
Q Consensus        83 ~~~~~~~~~e~~K~~   97 (112)
                      .+++.+++.|+.|.+
T Consensus       924 ~~~~~~~~~~~~~~~  938 (941)
T TIGR01517       924 LGMLSLIFGVLLRLI  938 (941)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999999876

The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.

>PRK15122 magnesium-transporting ATPase; Provisional

Probab=99.43  E-value=1.4e-12  Score=107.74  Aligned_cols=96  Identities=14%  Similarity=0.113  Sum_probs=84.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCcccccccccHHHHHHHHHHHHHHHHHHhhhh--hhhcccccCCCcchhHHHHHHH
Q psy6872           7 CQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY--LNKVLKTRPVKMKYWLTPLPIA   84 (112)
Q Consensus         7 a~t~~F~~lv~~ql~~~~~~Rs~~~~~~~~~~~N~~l~~~~~~~~~l~~~~~~vp~--l~~~f~~~pl~~~~w~~~~~~~   84 (112)
                      .+|+.|.+++++|++|.+++|+++.++|    +|++.+.++.++++++++++|+|+  ++.+|+++|+++.+|.++++.+
T Consensus       806 ~~t~~f~~l~~~q~~~~~~~R~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~f~~~~l~~~~~~~~~~~~  881 (903)
T PRK15122        806 FQSGWFIEGLLSQTLVVHMLRTQKIPFI----QSTAALPVLLTTGLIMAIGIYIPFSPLGAMVGLEPLPWSYFPWLAATL  881 (903)
T ss_pred             hHHHHHHHHHHHHHHHHHhhCcCCCCcC----cchHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence            3578899999999999999999865433    577888888899999999999997  9999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCch
Q psy6872          85 VLIVIYGEFGKIISRLYPNSFM  106 (112)
Q Consensus        85 ~~~~~~~e~~K~~~r~~~~~~~  106 (112)
                      +..+++.|+.|.+..++.+.|+
T Consensus       882 ~~~~~~~e~~k~~~~r~~~~~~  903 (903)
T PRK15122        882 LGYCLVAQGMKRFYIRRFGQWF  903 (903)
T ss_pred             HHHHHHHHHHHHHHhhhccccC
Confidence            9999999999977666667774

>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase

Probab=99.20  E-value=1.9e-10  Score=95.00  Aligned_cols=93  Identities=12%  Similarity=0.160  Sum_probs=76.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCcccccccccHHHHHHHHHHHHHHHHHHhhhh--hhhcccccCCCc--chhHHHHH
Q psy6872           7 CQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY--LNKVLKTRPVKM--KYWLTPLP   82 (112)
Q Consensus         7 a~t~~F~~lv~~ql~~~~~~Rs~~~~~~~~~~~N~~l~~~~~~~~~l~~~~~~vp~--l~~~f~~~pl~~--~~w~~~~~   82 (112)
                      -||+.|.+++++|++|++++|+++.++|    +|++++.+++++++++++++|+|+  ++.+|++.|+++  .+|..++.
T Consensus       771 ~~t~~f~~~~~~~~~~~~~~R~~~~~~~----~n~~~~~~~~~~~~~~~~~~~~p~~~~~~~f~~~~l~~~~~~~~~~~~  846 (867)
T TIGR01524       771 FQSGWFVVGLLSQTLVVHMIRTEKIPFI----QSRAAAPVMIATLLVMALGIIIPFSPLGHSIGLVSLPLSYFPWLIAIL  846 (867)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCcCCCCcC----cchHHHHHHHHHHHHHHHHHHhchhhhhhhhccccCCccHHHHHHHHH
Confidence            3788999999999999999999865433    689999999999999999999997  499999998854  57777776


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCc
Q psy6872          83 IAVLIVIYGEFGKIISRLYPNSF  105 (112)
Q Consensus        83 ~~~~~~~~~e~~K~~~r~~~~~~  105 (112)
                      .+..  ++.|+.|.+..++.+.|
T Consensus       847 ~~~~--~~~e~~k~~~~~~~~~~  867 (867)
T TIGR01524       847 VGYM--ATMQLVKTFYIRRFGEW  867 (867)
T ss_pred             HHHH--HHHHHHHHHHHHhccCC
Confidence            6655  67899997766655555

The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.

>PRK10517 magnesium-transporting ATPase MgtA; Provisional

Probab=99.12  E-value=6.7e-10  Score=92.07  Aligned_cols=90  Identities=14%  Similarity=0.142  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcccccccccHHHHHHHHHHHHHHHHHHhhh--hhhhcccccCCC--cchhHHHHHH
Q psy6872           8 QTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSP--YLNKVLKTRPVK--MKYWLTPLPI   83 (112)
Q Consensus         8 ~t~~F~~lv~~ql~~~~~~Rs~~~~~~~~~~~N~~l~~~~~~~~~l~~~~~~vp--~l~~~f~~~pl~--~~~w~~~~~~   83 (112)
                      +|..|.+++++|+++.++||+++.++|    +|++++.+++.+++++++++|+|  +++.+|+++|++  ..+|..++..
T Consensus       807 ~~~~F~~~~~~q~~~~~~~R~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~  882 (902)
T PRK10517        807 QSGWFVVGLLSQTLIVHMIRTRRIPFI----QSRAAWPLMIMTLIVMAVGIALPFSPLASYLQLQALPLSYFPWLVAILA  882 (902)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCcc----cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhCCcCCChhHHHHHHHHHH
Confidence            445599999999999999999765322    78999999999999999999999  999999999999  5678777766


Q ss_pred             HHHHHHHHHHHHHHHHhCCC
Q psy6872          84 AVLIVIYGEFGKIISRLYPN  103 (112)
Q Consensus        84 ~~~~~~~~e~~K~~~r~~~~  103 (112)
                      +..  ++.|+.|...-++-+
T Consensus       883 ~~~--~~~e~~K~~~~~~~~  900 (902)
T PRK10517        883 GYM--TLTQLVKGFYSRRYG  900 (902)
T ss_pred             HHH--HHHHHHHHHHHHhhc
Confidence            655  667888866444333

>KOG0204|consensus

Probab=98.74  E-value=8.8e-10  Score=89.59  Aligned_cols=88  Identities=18%  Similarity=0.336  Sum_probs=78.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcCC-Cccccccc-ccHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCcchhHHHHHHH
Q psy6872           7 CQTAYFISIVIAQCAALIVCKTRY-NSIYQQKM-NNWVLNIGLVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLTPLPIA   84 (112)
Q Consensus         7 a~t~~F~~lv~~ql~~~~~~Rs~~-~~~~~~~~-~N~~l~~~~~~~~~l~~~~~~vp~l~~~f~~~pl~~~~w~~~~~~~   84 (112)
                      -.|+.|.++|++|+||-+|.|+.+ .++|+ +. +|+.+...+.+.+++|+.++  ..++..|.+.|+++.||++|+..+
T Consensus       916 ~nTiIFNtFV~~qvFNEinaRki~~~NvFk-gi~~N~~F~~ii~~T~v~QviIv--eF~g~~~st~~L~~~qWl~ci~~g  992 (1034)
T KOG0204|consen  916 HNTIIFNTFVFCQVFNEINARKIDERNVFK-GIFRNRLFCVIITITVVSQVIIV--EFGGAFFSTTPLSLTQWLWCIFIG  992 (1034)
T ss_pred             heeeehhHHHHHHHHHHHhhcchhHHhHHH-HHhcCceEEEEeeeeeehhhhhh--hhcCcceeeecccHHHHHHHHHHH
Confidence            348999999999999999999975 57787 65 99999888888899998876  447889999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy6872          85 VLIVIYGEFGKII   97 (112)
Q Consensus        85 ~~~~~~~e~~K~~   97 (112)
                      ++.++|..+.|.+
T Consensus       993 ~~sl~~g~~ik~i 1005 (1034)
T KOG0204|consen  993 VLSLPWGQLLKCI 1005 (1034)
T ss_pred             HHHHHHHHHheec
Confidence            9999999998866

>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=98.69  E-value=2.3e-07  Score=77.36  Aligned_cols=93  Identities=23%  Similarity=0.449  Sum_probs=80.8

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhcCCCccccccc-ccHHHHHHHHHHHHHHHHHHhhhhhh-hcccccCCCcchhHHHH
Q psy6872           4 ESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKM-NNWVLNIGLVFEILVAFVLSYSPYLN-KVLKTRPVKMKYWLTPL   81 (112)
Q Consensus         4 ~~~a~t~~F~~lv~~ql~~~~~~Rs~~~~~~~~~~-~N~~l~~~~~~~~~l~~~~~~vp~l~-~~f~~~pl~~~~w~~~~   81 (112)
                      ...++|+.|..++++|.++.+.+|+.+.+.++.++ +|+.++++++...+++++..|+|+.+ ..|+..|++..+|..+.
T Consensus       816 ~~~~~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~l~l~~~~~~~~~~~~f~~~~~~~~~~~~~~  895 (917)
T COG0474         816 QALLQTTAFTVLVLIQLLLTLAVRSRGRPFLSSLLFSNKYLWLALLVIIILQLLIIFLPPLNLKIFQPTPLSLFEWLIAI  895 (917)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchhhcccccCHHHHHHHHHHHHHHHHHHHhHHhHhhhccCCCCcHHHHHHHH
Confidence            56689999999999999999999999899888777 99999999999999999999999999 79999999988999888


Q ss_pred             HHHHHH--HHHHHHHHH
Q psy6872          82 PIAVLI--VIYGEFGKI   96 (112)
Q Consensus        82 ~~~~~~--~~~~e~~K~   96 (112)
                      ..+...  +...+..|.
T Consensus       896 ~~~~~~~~~~~~~~~~~  912 (917)
T COG0474         896 AVALLLLYIVVSELYKL  912 (917)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            888444  444444443

>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V)

Probab=97.30  E-value=0.00042  Score=58.96  Aligned_cols=66  Identities=17%  Similarity=0.240  Sum_probs=52.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCccccccc-ccHHHHHHHHHHHHHHH-HHH-hhhhhhhcccccCCCc
Q psy6872           7 CQTAYFISIVIAQCAALIVCKTRYNSIYQQKM-NNWVLNIGLVFEILVAF-VLS-YSPYLNKVLKTRPVKM   74 (112)
Q Consensus         7 a~t~~F~~lv~~ql~~~~~~Rs~~~~~~~~~~-~N~~l~~~~~~~~~l~~-~~~-~vp~l~~~f~~~pl~~   74 (112)
                      .+|+.| .++..|.++.+.+++. +++|+.++ +|++++++++++.++++ +++ |+|+++++|++.|++.
T Consensus       977 ~~T~~f-~~~~~~~~~~~~~~~~-g~pf~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 1045 (1054)
T TIGR01657       977 LNTVLF-FVSSFQYLITAIVNSK-GPPFREPIYKNKPFVYLLITGLGLLLVLLLDPHPLLGKILQIVPLPQ 1045 (1054)
T ss_pred             HHHHHH-HHHHHHHHHheEEEcC-CcchhhhHHHhHHHHHHHHHHHHHHHHhhhCCCHHHHhhheeeeCCH
Confidence            469999 5555566667788885 67788888 99999999888777665 344 8999999999999985

These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.

>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase

Probab=96.63  E-value=0.0058  Score=50.49  Aligned_cols=52  Identities=17%  Similarity=0.208  Sum_probs=40.9

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhcCCCcccccccccHHHHHHHHHHHHHHHHH
Q psy6872           4 ESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVL   57 (112)
Q Consensus         4 ~~~a~t~~F~~lv~~ql~~~~~~Rs~~~~~~~~~~~N~~l~~~~~~~~~l~~~~   57 (112)
                      .+++||++|..++++|.++.+++|+++.+..  ..+|+++..+.++..++..++
T Consensus       701 ~~~~~t~~f~~~~~~~~~~~~~~r~~~~~~~--~~p~~~l~~~~~~~~~~~~~~  752 (755)
T TIGR01647       701 HGNLQSLIYLQVSISGQATIFVTRTHGFFWS--ERPGKLLFIAFVIAQIIATFI  752 (755)
T ss_pred             HhhhHHHHHHHHHHHHHHHHheeccCCCCcc--cCCcHHHHHHHHHHHHHHHHH
Confidence            3478999999999999999999999876643  237888888877776665443

This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	112
2zxe_A	1028	Crystal Structure Of The Sodium - Potassium Pump In		5e-20
3b8e_A	998	Crystal Structure Of The Sodium-Potassium Pump Leng		7e-20
3n23_A	992	Crystal Structure Of The High Affinity Complex Betw		8e-20
3ixz_A	1034	Pig Gastric H+K+-Atpase Complexed With Aluminium Fl		2e-15

>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The E2.2k+.Pi State Length = 1028

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/104 (42%), Positives = 63/104 (60%)
Query: 3    LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY 62
            +E TC T++FISIV+ Q A LI+CKTR NSI+QQ M N +L  GL  E  +A  LSY P 
Sbjct: 919  VEFTCHTSFFISIVVVQWADLIICKTRRNSIFQQGMKNKILIFGLFEETALAAFLSYCPG 978
Query: 63   LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFM 106
             +  L+  P+K  +W    P +++I +Y E  + I R  P  ++
Sbjct: 979  TDVALRMYPLKPSWWFCAFPYSLIIFLYDEMRRFIIRRSPGGWV 1022

>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump Length = 998

Iteration: 1
 Score = 92.0 bits (227), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 42/104 (40%), Positives = 63/104 (60%)
Query: 3   LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY 62
           +E TC T +F++IV+ Q A L++CKTR NS++QQ M N +L  GL  E  +A  LSY P 
Sbjct: 889 VEFTCHTPFFVTIVVVQWADLVICKTRRNSVFQQGMKNKILIFGLFEETALAAFLSYCPG 948
Query: 63  LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFM 106
           +   L+  P+K  +W    P ++LI +Y E  K+I R  P  ++
Sbjct: 949 MGVALRMYPLKPTWWFCAFPYSLLIFVYDEVRKLIIRRRPGGWV 992

>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between Ouabain And The E2p Form Of The Sodium-Potassium Pump Length = 992

Iteration: 1
 Score = 92.0 bits (227), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 42/104 (40%), Positives = 63/104 (60%)
Query: 3   LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY 62
           +E TC T +F++IV+ Q A L++CKTR NS++QQ M N +L  GL  E  +A  LSY P 
Sbjct: 883 VEFTCHTPFFVTIVVVQWADLVICKTRRNSVFQQGMKNKILIFGLFEETALAAFLSYCPG 942
Query: 63  LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFM 106
           +   L+  P+K  +W    P ++LI +Y E  K+I R  P  ++
Sbjct: 943 MGVALRMYPLKPTWWFCAFPYSLLIFVYDEVRKLIIRRRPGGWV 986

>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride Length = 1034

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/110 (33%), Positives = 61/110 (55%), Gaps = 1/110 (0%)
Query: 4    ESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKM-NNWVLNIGLVFEILVAFVLSYSPY 62
            + TC T +FISI + Q A +++ KTR  S +QQ    N +L I +VF++ +   L Y P 
Sbjct: 925  QYTCYTVFFISIEMCQIADVLIRKTRRLSAFQQGFFRNRILVIAIVFQVCIGCFLCYCPG 984
Query: 63   LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFMAHHLTF 112
            +  +    P++ ++WL P+P  +LI +Y E  K+  R  P S+    L +
Sbjct: 985  MPNIFNFMPIRFQWWLVPMPFGLLIFVYDEIRKLGVRCCPGSWWDQELYY 1034

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	112
2zxe_A	1028	Na, K-ATPase alpha subunit; membrane protein, ION	9e-31
3ixz_A	1034	Potassium-transporting ATPase alpha; ION pump, H+,	2e-29
3ar4_A	995	Sarcoplasmic/endoplasmic reticulum calcium ATPase;	3e-11
3b8c_A	885	ATPase 2, plasma membrane-type; P-type ATPase, pro	1e-06

>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A Length = 1028

 Score =  113 bits (285), Expect = 9e-31
 Identities = 44/107 (41%), Positives = 63/107 (58%)

Query: 1    MNLESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYS 60
              +E TC T++FISIV+ Q A LI+CKTR NSI+QQ M N +L  GL  E  +A  LSY 
Sbjct: 917  KIVEFTCHTSFFISIVVVQWADLIICKTRRNSIFQQGMKNKILIFGLFEETALAAFLSYC 976

Query: 61   PYLNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFMA 107
            P  +  L+  P+K  +W    P +++I +Y E  + I R  P  ++ 
Sbjct: 977  PGTDVALRMYPLKPSWWFCAFPYSLIIFLYDEMRRFIIRRSPGGWVE 1023

>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A 1iwc_A 1iwf_A Length = 1034

 Score =  109 bits (275), Expect = 2e-29
 Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 1/108 (0%)

Query: 1    MNLESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQK-MNNWVLNIGLVFEILVAFVLSY 59
            +  + TC T +FISI + Q A +++ KTR  S +QQ    N +L I +VF++ +   L Y
Sbjct: 922  LYQQYTCYTVFFISIEMCQIADVLIRKTRRLSAFQQGFFRNRILVIAIVFQVCIGCFLCY 981

Query: 60   SPYLNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFMA 107
             P +  +    P++ ++WL P+P  +LI +Y E  K+  R  P S+  
Sbjct: 982  CPGMPNIFNFMPIRFQWWLVPMPFGLLIFVYDEIRKLGVRCCPGSWWD 1029

>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ... Length = 995

 Score = 57.6 bits (140), Expect = 3e-11
 Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 1/95 (1%)

Query: 8   QTAYFISIVIAQCAALIVCKTRYNSIYQQKM-NNWVLNIGLVFEILVAFVLSYSPYLNKV 66
            T     +V  +    +   +   S+ +     N  L   +   + + F++ Y   L  +
Sbjct: 898 MTMALSVLVTIEMCNALNSLSENQSLMRMPPWVNIWLLGSICLSMSLHFLILYVDPLPMI 957

Query: 67  LKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLY 101
            K + + +  WL  L I++ ++   E  K I+R Y
Sbjct: 958 FKLKALDLTQWLMVLKISLPVIGLDEILKFIARNY 992

>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana} Length = 885

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 14/92 (15%), Positives = 34/92 (36%), Gaps = 3/92 (3%)

Query: 8   QTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPYLNKVL 67
             A ++ + I   A + V ++R  S    +    +L I  +   L+A +++      +  
Sbjct: 754 MGAVYLQVSIISQALIFVTRSR--SWSFVERPGALLMIAFLIAQLIATLIAVYA-NWEFA 810

Query: 68  KTRPVKMKYWLTPLPIAVLIVIYGEFGKIISR 99
           K R +   +       +++     +  K   R
Sbjct: 811 KIRGIGWGWAGVIWLYSIVTYFPLDVFKFAIR 842

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	112
3ixz_A	1034	Potassium-transporting ATPase alpha; ION pump, H+,	99.87
2zxe_A	1028	Na, K-ATPase alpha subunit; membrane protein, ION	99.82
3ar4_A	995	Sarcoplasmic/endoplasmic reticulum calcium ATPase;	99.7
1mhs_A	920	Proton pump, plasma membrane ATPase; ION transport	99.24
3b8c_A	885	ATPase 2, plasma membrane-type; P-type ATPase, pro	98.13

>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A

Probab=99.87  E-value=8.7e-22  Score=162.29  Aligned_cols=107  Identities=35%  Similarity=0.699  Sum_probs=103.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhcCCCccccccc-ccHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCcchhHHHHHHH
Q psy6872           6 TCQTAYFISIVIAQCAALIVCKTRYNSIYQQKM-NNWVLNIGLVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLTPLPIA   84 (112)
Q Consensus         6 ~a~t~~F~~lv~~ql~~~~~~Rs~~~~~~~~~~-~N~~l~~~~~~~~~l~~~~~~vp~l~~~f~~~pl~~~~w~~~~~~~   84 (112)
                      .+||++|.+++++|++|+++||+++.++|+.++ +|++++++++++++++++++|+|+++.+|++.|+++.+|..+++.+
T Consensus       927 ~~~t~~f~~lv~~q~~~~~~~r~~~~s~~~~~~~~N~~l~~~~~~~~~l~~~~~~~p~~~~~f~~~~l~~~~w~~~~~~~ 1006 (1034)
T 3ixz_A          927 TCYTVFFISIEMCQIADVLIRKTRRLSAFQQGFFRNRILVIAIVFQVCIGCFLCYCPGMPNIFNFMPIRFQWWLVPMPFG 1006 (1034)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhccCCCcccccCCcccHHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCCCHHHHHHHHHHH
Confidence            489999999999999999999999999999887 9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCchhhhccC
Q psy6872          85 VLIVIYGEFGKIISRLYPNSFMAHHLTF  112 (112)
Q Consensus        85 ~~~~~~~e~~K~~~r~~~~~~~~~~~~~  112 (112)
                      ++++++.|++|++.|++|++|+++.+.|
T Consensus      1007 ~~~~~~~e~~K~~~r~~~~~~~~~~~~~ 1034 (1034)
T 3ixz_A         1007 LLIFVYDEIRKLGVRCCPGSWWDQELYY 1034 (1034)
T ss_pred             HHHHHHHHHHHHHHHhCCCChhhheecC
Confidence            9999999999999999999999998766

>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A

Probab=99.82  E-value=6.4e-20  Score=151.18  Aligned_cols=107  Identities=40%  Similarity=0.724  Sum_probs=102.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhcCCCcccccccccHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCcchhHHHHHHHH
Q psy6872           6 TCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLTPLPIAV   85 (112)
Q Consensus         6 ~a~t~~F~~lv~~ql~~~~~~Rs~~~~~~~~~~~N~~l~~~~~~~~~l~~~~~~vp~l~~~f~~~pl~~~~w~~~~~~~~   85 (112)
                      ++||++|.+++++|++|.++||+++.++|+.+++|++++++++++++++++++|+|+++.+|+++|+++.+|.++++.++
T Consensus       922 ~~~T~~f~~~v~~q~~~~~~~r~~~~~~~~~~~~n~~l~~~~~~~~~l~~~~~~~p~~~~~f~~~~l~~~~w~~~~~~~~ 1001 (1028)
T 2zxe_A          922 TCHTSFFISIVVVQWADLIICKTRRNSIFQQGMKNKILIFGLFEETALAAFLSYCPGTDVALRMYPLKPSWWFCAFPYSL 1001 (1028)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCSSSCHHHHCSCCHHHHHHHHHHHHHHHHHHHSTTHHHHTCCCCCCGGGGGTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCcchhccCCcCHHHHHHHHHHHHHHHHHHHhhhHHhhhcCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999999988888877899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCchhhhccC
Q psy6872          86 LIVIYGEFGKIISRLYPNSFMAHHLTF  112 (112)
Q Consensus        86 ~~~~~~e~~K~~~r~~~~~~~~~~~~~  112 (112)
                      ..+++.|++|++.|+++++|+++.+-|
T Consensus      1002 ~~~~~~e~~k~~~r~~~~~~~~~~~~~ 1028 (1028)
T 2zxe_A         1002 IIFLYDEMRRFIIRRSPGGWVEQETYY 1028 (1028)
T ss_dssp             HHHHHHHHHHHHHHHCTTSHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHccCcchhHhhhcC
Confidence            999999999999999999999998755

>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...

Probab=99.70  E-value=1.1e-16  Score=131.68  Aligned_cols=100  Identities=18%  Similarity=0.247  Sum_probs=94.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhcCCCccccccc-ccHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCcchhHHHHHH
Q psy6872           5 STCQTAYFISIVIAQCAALIVCKTRYNSIYQQKM-NNWVLNIGLVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLTPLPI   83 (112)
Q Consensus         5 ~~a~t~~F~~lv~~ql~~~~~~Rs~~~~~~~~~~-~N~~l~~~~~~~~~l~~~~~~vp~l~~~f~~~pl~~~~w~~~~~~   83 (112)
                      .++||++|++++++|++|.++||+.+.++|..+. +|++++++++++++++++++|+|+++++|++.|+++.+|..+++.
T Consensus       895 ~~~~t~~f~~lv~~~~~~~~~~r~~~~~~~~~~~~~n~~l~~~~~~~~~l~~~~~~~p~~~~~f~~~~l~~~~w~~~~~~  974 (995)
T 3ar4_A          895 PEPMTMALSVLVTIEMCNALNSLSENQSLMRMPPWVNIWLLGSICLSMSLHFLILYVDPLPMIFKLKALDLTQWLMVLKI  974 (995)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSCSSCCTTTSCGGGCHHHHHHHHHHHHHHHHHHHSTHHHHHTTCCCCCHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHHhhccccchhccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHH
Confidence            3589999999999999999999999988888787 999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCC
Q psy6872          84 AVLIVIYGEFGKIISRLYPNS  104 (112)
Q Consensus        84 ~~~~~~~~e~~K~~~r~~~~~  104 (112)
                      ++..+++.|++|++.|++++|
T Consensus       975 ~~~~~~~~e~~k~~~r~~~~~  995 (995)
T 3ar4_A          975 SLPVIGLDEILKFIARNYLEG  995 (995)
T ss_dssp             HTHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHHHhhcCCCC
Confidence            999999999999999988765

>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1

Probab=99.24  E-value=6.7e-12  Score=102.78  Aligned_cols=96  Identities=7%  Similarity=0.038  Sum_probs=80.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhcCCCcccccccccHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCcchhHHHHHHH
Q psy6872           5 STCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLTPLPIA   84 (112)
Q Consensus         5 ~~a~t~~F~~lv~~ql~~~~~~Rs~~~~~~~~~~~N~~l~~~~~~~~~l~~~~~~vp~l~~~f~~~pl~~~~w~~~~~~~   84 (112)
                      .++||++|.+++++|+++.+++|+.+. +++ +..|+++++++++..+++..+.|.|    +|++.|+++.+|+.+++.+
T Consensus       791 ~~~~T~~f~~lv~~~~~~~~~~R~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~f~~~~l~~~~~~~~~~~~  864 (920)
T 1mhs_A          791 GNMDEVLFLQISLTENWLIFITRANGP-FWS-SIPSWQLSGAIFLVDILATCFTIWG----WFEHSDTSIVAVVRIWIFS  864 (920)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTSSSCSSS-CSC-CSCTHHHHHHHHHHHHHHHHHHSSS----STTSCSHHHHTHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccchh-hhc-CchHHHHHHHHHHHHHHHHHHHHhh----hhccCCCCHHHHHHHHHHH
Confidence            468999999999999999999999765 443 5588988888888887777777766    8999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCchhh
Q psy6872          85 VLIVIYGEFGKIISRLYPNSFMAH  108 (112)
Q Consensus        85 ~~~~~~~e~~K~~~r~~~~~~~~~  108 (112)
                      ++.+++.|+.|++.++.  .|+++
T Consensus       865 ~~~~~~~e~~k~~~~~~--~~fd~  886 (920)
T 1mhs_A          865 FGIFCIMGGVYYILQDS--VGFDN  886 (920)
T ss_dssp             THHHHHHHHHHHCCCCC--CTTHH
T ss_pred             HHHHHHHHHHHHHHhhh--HHHHH
Confidence            99999999999875554  35543

>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}

Probab=98.13  E-value=7.8e-09  Score=84.53  Aligned_cols=93  Identities=14%  Similarity=0.147  Sum_probs=68.4

Q ss_pred             hhhHHH-HHHHHHHHHHHHHHHHhcCCCcccccccccHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCcchhHHHHHH
Q psy6872           5 STCQTA-YFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLTPLPI   83 (112)
Q Consensus         5 ~~a~t~-~F~~lv~~ql~~~~~~Rs~~~~~~~~~~~N~~l~~~~~~~~~l~~~~~~vp~l~~~f~~~pl~~~~w~~~~~~   83 (112)
                      .++||+ +|.+++++|+ +.|+||+++.++++.+ .|++.+..++..++++++.+|.+  ..++++.|+++.+|.++++.
T Consensus       751 ~~~~t~~~~~~~~~~~~-~~~~~Rs~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~  826 (885)
T 3b8c_A          751 HELMGAVYLQVSIISQA-LIFVTRSRSWSFVERP-GALLMIAFLIAQLIATLIAVYAN--WEFAKIRGIGWGWAGVIWLY  826 (885)
T ss_dssp             HHHHTTTTTTTSSTTGG-GTTCSSSCTTTSTTST-TTTTSGGGSSTTTTTTSSSSSCC--CCSSCCCCCTTTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHhccCCCCcccCc-cHHHHHHHHHHHHHHHHHHHhcc--ccccccCCchHHHHHHHHHH
Confidence            346555 6667888887 8999999887665533 66655555555555566666653  24457999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhC
Q psy6872          84 AVLIVIYGEFGKIISRLY  101 (112)
Q Consensus        84 ~~~~~~~~e~~K~~~r~~  101 (112)
                      +++.+++.|++|++.|+.
T Consensus       827 ~~~~~~~~e~~k~~~~~~  844 (885)
T 3b8c_A          827 SIVTYFPLDVFKFAIRYI  844 (885)
T ss_dssp             TGGGTHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999999887764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	112
d1wpga4	472	f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATP	1e-17

>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 472

class: Membrane and cell surface proteins and peptides
fold: Calcium ATPase, transmembrane domain M
superfamily: Calcium ATPase, transmembrane domain M
family: Calcium ATPase, transmembrane domain M
domain: Calcium ATPase, transmembrane domain M
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 74.7 bits (183), Expect = 1e-17
 Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 1/104 (0%)

Query: 1   MNLESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKM-NNWVLNIGLVFEILVAFVLSY 59
           +       T     +V  +    +   +   S+ +     N  L   +   + + F++ Y
Sbjct: 368 IFEAPEPMTMALSVLVTIEMCNALNSLSENQSLMRMPPWVNIWLLGSICLSMSLHFLILY 427

Query: 60  SPYLNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPN 103
              L  + K + + +  WL  L I++ ++   E  K I+R Y  
Sbjct: 428 VDPLPMIFKLKALDLTQWLMVLKISLPVIGLDEILKFIARNYLE 471

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	112
d1wpga4	472	Calcium ATPase, transmembrane domain M {Rabbit (Or	99.83

>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Membrane and cell surface proteins and peptides
fold: Calcium ATPase, transmembrane domain M
superfamily: Calcium ATPase, transmembrane domain M
family: Calcium ATPase, transmembrane domain M
domain: Calcium ATPase, transmembrane domain M
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.83  E-value=1.5e-20  Score=142.19  Aligned_cols=100  Identities=18%  Similarity=0.247  Sum_probs=96.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhcCCCccccccc-ccHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCcchhHHHHHH
Q psy6872           5 STCQTAYFISIVIAQCAALIVCKTRYNSIYQQKM-NNWVLNIGLVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLTPLPI   83 (112)
Q Consensus         5 ~~a~t~~F~~lv~~ql~~~~~~Rs~~~~~~~~~~-~N~~l~~~~~~~~~l~~~~~~vp~l~~~f~~~pl~~~~w~~~~~~   83 (112)
                      .++||++|++++++|++|.+++|+.+++.++.++ +|++++.+++++.+++++++|+|+++++|+++|+++.+|.++++.
T Consensus       372 ~~a~T~~F~~lv~~q~~~~~~~rs~~~s~~~~~~~~N~~l~~av~i~~~l~~~i~yiP~l~~vf~~~pL~~~~w~i~l~~  451 (472)
T d1wpga4         372 PEPMTMALSVLVTIEMCNALNSLSENQSLMRMPPWVNIWLLGSICLSMSLHFLILYVDPLPMIFKLKALDLTQWLMVLKI  451 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSCSSCCTTTSCGGGCHHHHHHHHHHHHHHHHHHHSTTTHHHHTCCCCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCcchhhcCccccHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCCCHHHHHHHHHH
Confidence            4689999999999999999999999999999887 999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCC
Q psy6872          84 AVLIVIYGEFGKIISRLYPNS  104 (112)
Q Consensus        84 ~~~~~~~~e~~K~~~r~~~~~  104 (112)
                      +++.++++|++|++.|++++|
T Consensus       452 ~~~~~~~~El~K~~~R~~~~~  472 (472)
T d1wpga4         452 SLPVIGLDEILKFIARNYLEG  472 (472)
T ss_dssp             HTHHHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHHHHHhhcCCCC
Confidence            999999999999999999875