Psyllid ID: psy6915

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------
Protein Sequence
MYNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYEMYLFENEVRGIVNW
Secondary Structure (PSIPRED)
cccEEEEEEEccccEEEEEEEccccccccccccEEEEEEEcccccEEEEEEEccccEEEcccEEcccccccccccccEEEEEEcccccccEEEEEEEEEEEEccccccHHccEEEccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEccccEEEEEEEccccEEcccccEEEEEEEccccccEEEEEEEHHHcEEccccEEccccccccHHHHEEEEEEEEccccccEEEEEEEEEEEccccccHHHHHHHHcccccEEEcccc
Coil and Loop (DISEMBL)
MYNHLVIkcrgdgrsymlnlhtpgdfdvtwgdMFTYALytrggpywqitkipfskfflqskgriqdiqnpldtdrissiglslvdqnngpfqleldyigieydpnhteEFAYEMYLFENEVRGIVNW
Flexible Loop (DISEMBL)
MYNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYEMYLFENEVRGIVNW
Low Complexity Region (SEG)
MYNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYEMYLFENEVRGIVNW
Disordered region (IsUnstruct)
***HLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYEMYLFENEVRGIV**
Disordered Region (DISOPRED)
MYNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYEMYLFENE*RGIVNW
Disordered Region (DISEMBL)
MYNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYEMYLFENEVRGIVNW
Disordered Region (DISPRO)
MYNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYEMYLFENEVRGIVNW
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYEMYLFENEVRGIVNW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	127	2.2.26 [Sep-21-2011]
Q9VAI1	296	Probable complex I interm	yes	N/A	0.897	0.385	0.620	1e-39
Q18726	340	Probable complex I interm	yes	N/A	0.897	0.335	0.552	2e-32
Q61FQ3	340	Probable complex I interm	N/A	N/A	0.897	0.335	0.552	2e-32
Q0MQ83	327	Complex I intermediate-as	N/A	N/A	0.881	0.342	0.544	8e-32
Q0MQ82	327	Complex I intermediate-as	N/A	N/A	0.881	0.342	0.544	9e-32
Q9Y375	327	Complex I intermediate-as	yes	N/A	0.881	0.342	0.544	9e-32
Q0MQ84	327	Complex I intermediate-as	yes	N/A	0.881	0.342	0.544	1e-31
Q9CWX2	328	Complex I intermediate-as	yes	N/A	0.881	0.341	0.535	2e-31
O42636	278	Complex I intermediate-as	N/A	N/A	0.740	0.338	0.237	3e-05
Q9LQI7	227	Probable complex I interm	yes	N/A	0.732	0.409	0.234	0.0005

>sp|Q9VAI1|CIA30_DROME Probable complex I intermediate-associated protein 30, mitochondrial OS=Drosophila melanogaster GN=CG7598 PE=2 SV=1

 Score =  161 bits (407), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 72/116 (62%), Positives = 91/116 (78%), Gaps = 2/116 (1%)

Query: 2   YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSK 61
           YN LV+K RGDGRSY++NLHT G FD+ W D++ Y LYTRGGP+WQI KIPFSKFFL SK
Sbjct: 172 YNMLVMKVRGDGRSYLINLHTEGYFDLMWNDIYHYVLYTRGGPHWQIAKIPFSKFFLSSK 231

Query: 62  GRIQDIQNPLDTDRISSIGLSLVDQN--NGPFQLELDYIGIEYDPNHTEEFAYEMY 115
           GR+QD Q  +  +R++  G S+  +   +GPF LE+DY+G+EYDP+H EEFAYEMY
Sbjct: 232 GRVQDRQGAIPLNRVTHFGFSVAAKKGMDGPFGLEIDYVGLEYDPSHREEFAYEMY 287

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).
Drosophila melanogaster (taxid: 7227)

>sp|Q18726|CIA30_CAEEL Probable complex I intermediate-associated protein 30, mitochondrial OS=Caenorhabditis elegans GN=C50B8.3 PE=3 SV=1

 Score =  137 bits (345), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/114 (55%), Positives = 83/114 (72%)

Query: 2   YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSK 61
           ++HL++K RGDGRSY + LH+P   D TWGD F++ L+T GGPYWQ  KIPFSKFF    
Sbjct: 217 FSHLLLKVRGDGRSYKIMLHSPLSMDFTWGDSFSHPLHTHGGPYWQYEKIPFSKFFHTVA 276

Query: 62  GRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYEMY 115
           GRIQD Q  ++ +  SSIG+ L+D+ +G F+LE+DYIG+  D  H E+FAYE Y
Sbjct: 277 GRIQDRQYRVNLEDTSSIGIVLMDRIDGDFRLEIDYIGVYNDTTHVEDFAYETY 330

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Caenorhabditis elegans (taxid: 6239)

>sp|Q61FQ3|CIA30_CAEBR Probable complex I intermediate-associated protein 30, mitochondrial OS=Caenorhabditis briggsae GN=CBG11538 PE=3 SV=1

 Score =  137 bits (344), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/114 (55%), Positives = 83/114 (72%)

Query: 2   YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSK 61
           ++HL++K RGDGRSY + LH+P   D TWGD F++ L+T GGPYWQ  KIPFSKFF    
Sbjct: 217 FSHLLLKVRGDGRSYKIMLHSPLSMDFTWGDSFSHPLHTHGGPYWQYEKIPFSKFFHTVA 276

Query: 62  GRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYEMY 115
           GRIQD Q  ++ +  SSIG+ L+D+ +G F+LE+DYIG+  D  H E+FAYE Y
Sbjct: 277 GRIQDRQYRVNLEDTSSIGIVLMDRIDGDFKLEIDYIGVYNDTTHVEDFAYETY 330

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Caenorhabditis briggsae (taxid: 6238)

>sp|Q0MQ83|CIA30_GORGO Complex I intermediate-associated protein 30, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFAF1 PE=2 SV=1

 Score =  135 bits (340), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 61/112 (54%), Positives = 83/112 (74%)

Query: 2   YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSK 61
           +N L ++ RGDGR +M+N+    DF      M++Y ++TRGGPYWQ  KIPFSKFF  ++
Sbjct: 205 FNTLYLRVRGDGRPWMVNIKEDTDFFQRTNQMYSYFMFTRGGPYWQEVKIPFSKFFFSNR 264

Query: 62  GRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYE 113
           GRI+D+Q+ L  D+ISSIG +L D+ +GPF LE+D+IG+  DP HTEEFAYE
Sbjct: 265 GRIRDVQHELPLDKISSIGFTLADKVDGPFFLEIDFIGVFTDPAHTEEFAYE 316

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Gorilla gorilla gorilla (taxid: 9595)

>sp|Q0MQ82|CIA30_PONPY Complex I intermediate-associated protein 30, mitochondrial OS=Pongo pygmaeus GN=NDUFAF1 PE=2 SV=1

 Score =  135 bits (339), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 61/112 (54%), Positives = 83/112 (74%)

Query: 2   YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSK 61
           +N L ++ RGDGR +M+N+    DF      M++Y ++TRGGPYWQ  KIPFSKFF  ++
Sbjct: 205 FNTLYLRVRGDGRPWMVNIKEDTDFFQRTNQMYSYFMFTRGGPYWQEVKIPFSKFFFSNR 264

Query: 62  GRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYE 113
           GRI+D+Q+ L  D+ISSIG +L D+ +GPF LE+D+IG+  DP HTEEFAYE
Sbjct: 265 GRIRDVQHELPLDKISSIGFTLADKVDGPFFLEIDFIGVFTDPAHTEEFAYE 316

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Pongo pygmaeus (taxid: 9600)

>sp|Q9Y375|CIA30_HUMAN Complex I intermediate-associated protein 30, mitochondrial OS=Homo sapiens GN=NDUFAF1 PE=1 SV=2

 Score =  135 bits (339), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 61/112 (54%), Positives = 83/112 (74%)

Query: 2   YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSK 61
           +N L ++ RGDGR +M+N+    DF      M++Y ++TRGGPYWQ  KIPFSKFF  ++
Sbjct: 205 FNTLYLRVRGDGRPWMVNIKEDTDFFQRTNQMYSYFMFTRGGPYWQEVKIPFSKFFFSNR 264

Query: 62  GRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYE 113
           GRI+D+Q+ L  D+ISSIG +L D+ +GPF LE+D+IG+  DP HTEEFAYE
Sbjct: 265 GRIRDVQHELPLDKISSIGFTLADKVDGPFFLEIDFIGVFTDPAHTEEFAYE 316

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Homo sapiens (taxid: 9606)

>sp|Q0MQ84|CIA30_PANTR Complex I intermediate-associated protein 30, mitochondrial OS=Pan troglodytes GN=NDUFAF1 PE=2 SV=1

 Score =  135 bits (339), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 61/112 (54%), Positives = 83/112 (74%)

Query: 2   YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSK 61
           +N L ++ RGDGR +M+N+    DF      M++Y ++TRGGPYWQ  KIPFSKFF  ++
Sbjct: 205 FNTLYLRVRGDGRPWMVNIKEDTDFFQRTNQMYSYFMFTRGGPYWQEVKIPFSKFFFSNR 264

Query: 62  GRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYE 113
           GRI+D+Q+ L  D+ISSIG +L D+ +GPF LE+D+IG+  DP HTEEFAYE
Sbjct: 265 GRIRDVQHELPLDKISSIGFTLADKVDGPFFLEIDFIGVFTDPAHTEEFAYE 316

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Pan troglodytes (taxid: 9598)

>sp|Q9CWX2|CIA30_MOUSE Complex I intermediate-associated protein 30, mitochondrial OS=Mus musculus GN=Ndufaf1 PE=2 SV=2

 Score =  134 bits (337), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 60/112 (53%), Positives = 83/112 (74%)

Query: 2   YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSK 61
           +N L ++ RGDGR +M+N+    +F      M++Y ++TRGGPYWQ  KIPFSKFF  ++
Sbjct: 206 FNTLYLRVRGDGRPWMVNIRQDTEFIQRKNQMYSYFMFTRGGPYWQEVKIPFSKFFFSNQ 265

Query: 62  GRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYE 113
           GR++D+Q PL  D+ISSIG +L D+ +GPF LE+D+IG+  DP HTEEFAYE
Sbjct: 266 GRVRDVQGPLVLDKISSIGFTLSDKVDGPFFLEIDFIGVFTDPAHTEEFAYE 317

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Mus musculus (taxid: 10090)

>sp|O42636|CIA30_NEUCR Complex I intermediate-associated protein 30, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cia30 PE=1 SV=1

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 50/97 (51%), Gaps = 3/97 (3%)

Query: 2   YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSK 61
           Y +L ++ + D RSY +N+ T     +   D+  + L+ +    W+   I ++ F   + 
Sbjct: 146 YAYLAMRVKTDARSYFVNVRTESVVPL---DLHQHRLFVKKPGQWETVLIKWNDFVRTNH 202

Query: 62  GRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYI 98
           G++ + Q  +   ++ SIG S  D+  GP++L ++ +
Sbjct: 203 GKVIEPQTGMLRQKVLSIGFSTTDRKAGPYELCVERL 239

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q9LQI7|CIA30_ARATH Probable complex I intermediate-associated protein 30 OS=Arabidopsis thaliana GN=At1g17350 PE=1 SV=2

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 18/111 (16%)

Query: 2   YNHLVIKCRGDGRSYMLNLHT------PGDFDVTWGDMFTYALYTRGGPYWQITKIPFSK 55
           Y+ + ++ RGDGR Y+  ++T      PG  +      F +A        W   KIP ++
Sbjct: 115 YDAIALRIRGDGRCYISTIYTENWVNSPGQSEDNSWQAFVFAPKDS----WYTAKIPLAR 170

Query: 56  FFLQSKGRIQDIQNPLDTDRISSIGLSL--------VDQNNGPFQLELDYI 98
           +    +G + D++  ++  R+  + LS+             G F++E+D+I
Sbjct: 171 YLPTWRGNVIDVEMEMNPGRVLGMSLSVNAEGGAVGAKSGAGDFRVEIDWI 221

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
91087275	307	PREDICTED: similar to CG7598 CG7598-PA [	0.897	0.371	0.657	9e-42
270011209	291	NADH dehydrogenase (ubiquinone) 1 alpha	0.897	0.391	0.657	1e-41
332375991	290	unknown [Dendroctonus ponderosae]	0.897	0.393	0.649	1e-38
193676275	309	PREDICTED: probable complex I intermedia	0.897	0.368	0.622	2e-38
195112449	294	GI10419 [Drosophila mojavensis] gi|19391	0.897	0.387	0.620	6e-38
21358497	296	CG7598 [Drosophila melanogaster] gi|2154	0.897	0.385	0.620	1e-37
195445129	298	GK11918 [Drosophila willistoni] gi|19416	0.897	0.382	0.603	1e-37
195062071	295	GH14323 [Drosophila grimshawi] gi|193891	0.897	0.386	0.620	1e-37
195158867	295	GL13912 [Drosophila persimilis] gi|19411	0.897	0.386	0.612	1e-37
125773031	295	GA20469 [Drosophila pseudoobscura pseudo	0.897	0.386	0.612	1e-37

>gi|91087275|ref|XP_975544.1| PREDICTED: similar to CG7598 CG7598-PA [Tribolium castaneum]

 Score =  174 bits (442), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 75/114 (65%), Positives = 97/114 (85%)

Query: 2   YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSK 61
           YN LV++ RGDGRSYMLN+ T G +D+ W DM+ Y LYTRGGPYWQ+++IPFSKFF+ SK
Sbjct: 171 YNMLVMRVRGDGRSYMLNISTRGYYDILWNDMYHYVLYTRGGPYWQVSRIPFSKFFMASK 230

Query: 62  GRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYEMY 115
           GR+QD Q+P+  +R+++ G+S+ D+ NGPF LE+DYIGIEYDPNHTEEFAYE+Y
Sbjct: 231 GRVQDKQHPIALNRVTNFGISIGDKVNGPFSLEIDYIGIEYDPNHTEEFAYELY 284

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270011209|gb|EFA07657.1| NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1 [Tribolium castaneum]

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 75/114 (65%), Positives = 97/114 (85%)

Query: 2   YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSK 61
           YN LV++ RGDGRSYMLN+ T G +D+ W DM+ Y LYTRGGPYWQ+++IPFSKFF+ SK
Sbjct: 155 YNMLVMRVRGDGRSYMLNISTRGYYDILWNDMYHYVLYTRGGPYWQVSRIPFSKFFMASK 214

Query: 62  GRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYEMY 115
           GR+QD Q+P+  +R+++ G+S+ D+ NGPF LE+DYIGIEYDPNHTEEFAYE+Y
Sbjct: 215 GRVQDKQHPIALNRVTNFGISIGDKVNGPFSLEIDYIGIEYDPNHTEEFAYELY 268

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332375991|gb|AEE63136.1| unknown [Dendroctonus ponderosae]

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 74/114 (64%), Positives = 89/114 (78%)

Query: 2   YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSK 61
           YN L++K RGDGR+Y+LN+ T G FD  W DM+ Y LYTRGGPYWQI KIPFSKFF  SK
Sbjct: 168 YNTLIMKVRGDGRTYLLNIATRGVFDTMWNDMYNYQLYTRGGPYWQIAKIPFSKFFFSSK 227

Query: 62  GRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYEMY 115
           GRIQD Q  L  +R++S G+S+ D++ G F LE+DYIG+EYDP H EEFAYEMY
Sbjct: 228 GRIQDEQCALPLNRVTSFGISVQDRHGGDFCLEIDYIGVEYDPKHVEEFAYEMY 281

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193676275|ref|XP_001948791.1| PREDICTED: probable complex I intermediate-associated protein 30, mitochondrial-like [Acyrthosiphon pisum]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 71/114 (62%), Positives = 89/114 (78%)

Query: 2   YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSK 61
           Y HL ++ RGDGRSY++N+H  G FD+ W D+FT+ LYTRGGPYWQ T+IPFSKFF  SK
Sbjct: 186 YTHLNLRLRGDGRSYLINIHVSGQFDIMWNDVFTFVLYTRGGPYWQTTRIPFSKFFFASK 245

Query: 62  GRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYEMY 115
           GRIQD Q PL   RI+  G+++ D+ +GPFQLE+DYIG ++DP H EE AYEMY
Sbjct: 246 GRIQDKQAPLPLYRITHFGITVSDKADGPFQLEIDYIGADFDPTHHEETAYEMY 299

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195112449|ref|XP_002000785.1| GI10419 [Drosophila mojavensis] gi|193917379|gb|EDW16246.1| GI10419 [Drosophila mojavensis]

 Score =  162 bits (409), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 72/116 (62%), Positives = 91/116 (78%), Gaps = 2/116 (1%)

Query: 2   YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSK 61
           YN L++K RGDGRSY++NLHT G FD+ W D++ Y LYTRGGP+WQI KIPFSKFFL SK
Sbjct: 170 YNMLIMKVRGDGRSYLINLHTEGYFDLMWNDIYHYVLYTRGGPHWQIAKIPFSKFFLSSK 229

Query: 62  GRIQDIQNPLDTDRISSIGLSLVDQN--NGPFQLELDYIGIEYDPNHTEEFAYEMY 115
           GR+QD QN +  D ++  G S+  +   +GPF LE+DY+G+EYDP+H EEFAYEMY
Sbjct: 230 GRVQDRQNAIRLDCVTHFGFSVAAKKGMDGPFGLEIDYVGLEYDPSHQEEFAYEMY 285

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|21358497|ref|NP_651718.1| CG7598 [Drosophila melanogaster] gi|21542021|sp|Q9VAI1.1|CIA30_DROME RecName: Full=Probable complex I intermediate-associated protein 30, mitochondrial; Flags: Precursor gi|7301819|gb|AAF56928.1| CG7598 [Drosophila melanogaster] gi|16768482|gb|AAL28460.1| GM05702p [Drosophila melanogaster]

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 72/116 (62%), Positives = 91/116 (78%), Gaps = 2/116 (1%)

Query: 2   YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSK 61
           YN LV+K RGDGRSY++NLHT G FD+ W D++ Y LYTRGGP+WQI KIPFSKFFL SK
Sbjct: 172 YNMLVMKVRGDGRSYLINLHTEGYFDLMWNDIYHYVLYTRGGPHWQIAKIPFSKFFLSSK 231

Query: 62  GRIQDIQNPLDTDRISSIGLSLVDQN--NGPFQLELDYIGIEYDPNHTEEFAYEMY 115
           GR+QD Q  +  +R++  G S+  +   +GPF LE+DY+G+EYDP+H EEFAYEMY
Sbjct: 232 GRVQDRQGAIPLNRVTHFGFSVAAKKGMDGPFGLEIDYVGLEYDPSHREEFAYEMY 287

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195445129|ref|XP_002070186.1| GK11918 [Drosophila willistoni] gi|194166271|gb|EDW81172.1| GK11918 [Drosophila willistoni]

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 70/116 (60%), Positives = 91/116 (78%), Gaps = 2/116 (1%)

Query: 2   YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSK 61
           YN L++K RGDGRSY++NLHT G FD+ W D++ Y LYTRGGP+WQI KIPFSKFFL SK
Sbjct: 174 YNMLIMKVRGDGRSYLINLHTEGYFDLMWNDIYHYVLYTRGGPHWQIAKIPFSKFFLSSK 233

Query: 62  GRIQDIQNPLDTDRISSIGLSLVDQN--NGPFQLELDYIGIEYDPNHTEEFAYEMY 115
           GR+QD Q  +  ++++  G S+  +   +GPF LE+DY+G+EYDP+H EEFAYEMY
Sbjct: 234 GRVQDRQGAIALNKVTHFGFSVAAKKGMDGPFNLEIDYVGLEYDPSHREEFAYEMY 289

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195062071|ref|XP_001996127.1| GH14323 [Drosophila grimshawi] gi|193891919|gb|EDV90785.1| GH14323 [Drosophila grimshawi]

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 72/116 (62%), Positives = 91/116 (78%), Gaps = 2/116 (1%)

Query: 2   YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSK 61
           YN LV+K RGDGRSY++NLHT G FD+ W D++ Y LYTRGGP+WQI KIPFSKFFL SK
Sbjct: 171 YNMLVMKVRGDGRSYLINLHTEGYFDLMWNDIYHYVLYTRGGPHWQIAKIPFSKFFLSSK 230

Query: 62  GRIQDIQNPLDTDRISSIGLSLVDQN--NGPFQLELDYIGIEYDPNHTEEFAYEMY 115
           GR+QD QN +  + ++  G S+  +   +GPF LE+DY+G+EYDP+H EEFAYEMY
Sbjct: 231 GRVQDRQNAIALNCVTHFGFSVAAKKGMDGPFGLEIDYVGLEYDPSHREEFAYEMY 286

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195158867|ref|XP_002020306.1| GL13912 [Drosophila persimilis] gi|194117075|gb|EDW39118.1| GL13912 [Drosophila persimilis]

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 71/116 (61%), Positives = 91/116 (78%), Gaps = 2/116 (1%)

Query: 2   YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSK 61
           YN L++K RGDGRSY++NLHT G FD+ W D++ Y LYTRGGP+WQI KIPFSKFFL SK
Sbjct: 171 YNMLIMKVRGDGRSYLINLHTEGYFDLMWNDIYHYVLYTRGGPHWQIAKIPFSKFFLSSK 230

Query: 62  GRIQDIQNPLDTDRISSIGLSLVDQN--NGPFQLELDYIGIEYDPNHTEEFAYEMY 115
           GR+QD Q  +  +R++  G S+  +   +GPF LE+DY+G+EYDP+H EEFAYEMY
Sbjct: 231 GRVQDRQGAIPLNRVTHFGFSVAAKKGMDGPFGLEIDYVGLEYDPSHREEFAYEMY 286

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125773031|ref|XP_001357774.1| GA20469 [Drosophila pseudoobscura pseudoobscura] gi|54637507|gb|EAL26909.1| GA20469 [Drosophila pseudoobscura pseudoobscura]

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 71/116 (61%), Positives = 91/116 (78%), Gaps = 2/116 (1%)

Query: 2   YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSK 61
           YN L++K RGDGRSY++NLHT G FD+ W D++ Y LYTRGGP+WQI KIPFSKFFL SK
Sbjct: 171 YNMLIMKVRGDGRSYLINLHTEGYFDLMWNDIYHYVLYTRGGPHWQIAKIPFSKFFLSSK 230

Query: 62  GRIQDIQNPLDTDRISSIGLSLVDQN--NGPFQLELDYIGIEYDPNHTEEFAYEMY 115
           GR+QD Q  +  +R++  G S+  +   +GPF LE+DY+G+EYDP+H EEFAYEMY
Sbjct: 231 GRVQDRQGAIPLNRVTHFGFSVAAKKGMDGPFGLEIDYVGLEYDPSHREEFAYEMY 286

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
FB|FBgn0039689	296	CG7598 [Drosophila melanogaste	0.897	0.385	0.620	1.6e-38
ZFIN|ZDB-GENE-050306-9	304	ndufaf1 "NADH dehydrogenase (u	0.897	0.375	0.570	4.7e-32
UNIPROTKB|E1BZH1	303	NDUFAF1 "Uncharacterized prote	0.897	0.376	0.535	3.3e-31
UNIPROTKB|Q9Y375	327	NDUFAF1 "Complex I intermediat	0.881	0.342	0.544	5.4e-31
MGI|MGI:1916952	328	Ndufaf1 "NADH dehydrogenase (u	0.881	0.341	0.535	1.1e-30
RGD|1306202	330	Ndufaf1 "NADH dehydrogenase (u	0.881	0.339	0.544	1.1e-30
UNIPROTKB|E1BAZ2	328	NDUFAF1 "Uncharacterized prote	0.881	0.341	0.535	4.4e-29
UNIPROTKB|E2RPE7	328	NDUFAF1 "Uncharacterized prote	0.881	0.341	0.535	4.4e-29
CGD|CAL0004155	227	orf19.3353 [Candida albicans (	0.748	0.418	0.313	9.4e-11
UNIPROTKB|Q5A9Q4	227	CIA30 "Potential mitochondrial	0.748	0.418	0.313	9.4e-11

FB|FBgn0039689 CG7598 [Drosophila melanogaster (taxid:7227)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 72/116 (62%), Positives = 91/116 (78%)

Query:     2 YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSK 61
             YN LV+K RGDGRSY++NLHT G FD+ W D++ Y LYTRGGP+WQI KIPFSKFFL SK
Sbjct:   172 YNMLVMKVRGDGRSYLINLHTEGYFDLMWNDIYHYVLYTRGGPHWQIAKIPFSKFFLSSK 231

Query:    62 GRIQDIQNPLDTDRISSIGLSLVDQN--NGPFQLELDYIGIEYDPNHTEEFAYEMY 115
             GR+QD Q  +  +R++  G S+  +   +GPF LE+DY+G+EYDP+H EEFAYEMY
Sbjct:   232 GRVQDRQGAIPLNRVTHFGFSVAAKKGMDGPFGLEIDYVGLEYDPSHREEFAYEMY 287

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0017004 "cytochrome complex assembly" evidence=NAS

GO:0006119 "oxidative phosphorylation" evidence=ISS

ZFIN|ZDB-GENE-050306-9 ndufaf1 "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1" [Danio rerio (taxid:7955)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 65/114 (57%), Positives = 86/114 (75%)

Query:     2 YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSK 61
             +N L ++ RGDGR +M+N+     F     D+++Y LYTRGGPYWQ  KIPFSKFFL S+
Sbjct:   187 FNTLHLRIRGDGRPWMINVSAETYFSHQRDDIYSYFLYTRGGPYWQDVKIPFSKFFLSSR 246

Query:    62 GRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYEMY 115
             GRIQD Q+PL  D+I++IG +L D+ +GPFQLE+D+IG+  D  HTEEFAYE+Y
Sbjct:   247 GRIQDSQHPLWLDKINTIGFTLGDKADGPFQLEIDFIGLNNDCAHTEEFAYELY 300

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1BZH1 NDUFAF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 61/114 (53%), Positives = 87/114 (76%)

Query:     2 YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSK 61
             +N L ++ RGDGR++M+N++T   F     D++ Y ++TRGGPYW+  KIPFSKFFL S+
Sbjct:   184 FNCLYLRVRGDGRAWMVNIYTDPYFSHQKDDLYNYFMFTRGGPYWEEIKIPFSKFFLSSR 243

Query:    62 GRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYEMY 115
             GR+QD Q+P+  D+IS++G +L D+ +GPFQLE+D+IG+  D  HTEEFAYE Y
Sbjct:   244 GRVQDDQHPIWLDKISTLGFTLGDKVDGPFQLEIDFIGLLNDRAHTEEFAYETY 297

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q9Y375 NDUFAF1 "Complex I intermediate-associated protein 30, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 61/112 (54%), Positives = 83/112 (74%)

Query:     2 YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSK 61
             +N L ++ RGDGR +M+N+    DF      M++Y ++TRGGPYWQ  KIPFSKFF  ++
Sbjct:   205 FNTLYLRVRGDGRPWMVNIKEDTDFFQRTNQMYSYFMFTRGGPYWQEVKIPFSKFFFSNR 264

Query:    62 GRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYE 113
             GRI+D+Q+ L  D+ISSIG +L D+ +GPF LE+D+IG+  DP HTEEFAYE
Sbjct:   265 GRIRDVQHELPLDKISSIGFTLADKVDGPFFLEIDFIGVFTDPAHTEEFAYE 316

GO:0006461 "protein complex assembly" evidence=NAS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=NAS

GO:0051082 "unfolded protein binding" evidence=NAS

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

MGI|MGI:1916952 Ndufaf1 "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1" [Mus musculus (taxid:10090)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 60/112 (53%), Positives = 83/112 (74%)

Query:     2 YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSK 61
             +N L ++ RGDGR +M+N+    +F      M++Y ++TRGGPYWQ  KIPFSKFF  ++
Sbjct:   206 FNTLYLRVRGDGRPWMVNIRQDTEFIQRKNQMYSYFMFTRGGPYWQEVKIPFSKFFFSNQ 265

Query:    62 GRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYE 113
             GR++D+Q PL  D+ISSIG +L D+ +GPF LE+D+IG+  DP HTEEFAYE
Sbjct:   266 GRVRDVQGPLVLDKISSIGFTLSDKVDGPFFLEIDFIGVFTDPAHTEEFAYE 317

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0055114 "oxidation-reduction process" evidence=IEA

RGD|1306202 Ndufaf1 "NADH dehydrogenase (ubiquinone) complex I, assembly factor 1" [Rattus norvegicus (taxid:10116)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 61/112 (54%), Positives = 83/112 (74%)

Query:     2 YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSK 61
             +N L ++ RGDGR +M+N+    +F      M++Y ++TRGGPYWQ  KIPFSKFF  ++
Sbjct:   208 FNTLYLRVRGDGRPWMVNIKQDTEFIQRKNQMYSYFMFTRGGPYWQEVKIPFSKFFFSNQ 267

Query:    62 GRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYE 113
             GRI+D+Q PL  D+ISSIG +L D+ +GPF LE+D+IG+  DP HTEEFAYE
Sbjct:   268 GRIRDVQGPLILDKISSIGFTLSDKVDGPFFLEIDFIGVFTDPAHTEEFAYE 319

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

UNIPROTKB|E1BAZ2 NDUFAF1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 60/112 (53%), Positives = 80/112 (71%)

Query:     2 YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSK 61
             +N L ++ RGDGR +M+N+    D       M++Y ++TRGGPYWQ  KIPFSKFF  ++
Sbjct:   206 FNTLYLRVRGDGRPWMVNIREDTDIIQKKDQMYSYFMFTRGGPYWQEVKIPFSKFFFSNQ 265

Query:    62 GRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYE 113
             GRI+D Q  L  D+ISSIG +L D+ +GPF LE+D+IG+  DP HTEEFAYE
Sbjct:   266 GRIRDAQYQLLLDKISSIGFTLADKVDGPFFLEIDFIGVFTDPAHTEEFAYE 317

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E2RPE7 NDUFAF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 60/112 (53%), Positives = 80/112 (71%)

Query:     2 YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSK 61
             +N L ++ RGDGR +M+N+    D       M++Y ++TRGGPYWQ  KIPFSKFF  ++
Sbjct:   206 FNTLYLRVRGDGRPWMVNIREDTDIVQRKNQMYSYFMFTRGGPYWQEVKIPFSKFFYSNQ 265

Query:    62 GRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYE 113
             GRI+D Q  L  D+ISSIG +L D+ +GPF LE+D+IG+  DP HTEEFAYE
Sbjct:   266 GRIRDAQYQLLLDKISSIGFTLADKVDGPFFLEIDFIGVFTDPAHTEEFAYE 317

GO:0005739 "mitochondrion" evidence=IEA

CGD|CAL0004155 orf19.3353 [Candida albicans (taxid:5476)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 31/99 (31%), Positives = 58/99 (58%)

Query:     2 YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSK 61
             Y+ LV++ +GD R Y++N+       VT  D+F + L+      W+   IP + F + + 
Sbjct:   113 YSSLVLRVKGDRRKYLVNIQANTPL-VT--DLFQHRLFLNHPGQWETVVIPLNDFVMTNW 169

Query:    62 GRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGI 100
             G IQD  + L+   + S+G+ L+D++ GP+ L++D+I +
Sbjct:   170 GVIQD-GSELNKGEVKSVGIGLLDKHYGPYSLKIDWIKV 207

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5A9Q4 CIA30 "Potential mitochondrial Complex I assembly chaperone" [Candida albicans SC5314 (taxid:237561)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 31/99 (31%), Positives = 58/99 (58%)

Query:     2 YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSK 61
             Y+ LV++ +GD R Y++N+       VT  D+F + L+      W+   IP + F + + 
Sbjct:   113 YSSLVLRVKGDRRKYLVNIQANTPL-VT--DLFQHRLFLNHPGQWETVVIPLNDFVMTNW 169

Query:    62 GRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGI 100
             G IQD  + L+   + S+G+ L+D++ GP+ L++D+I +
Sbjct:   170 GVIQD-GSELNKGEVKSVGIGLLDKHYGPYSLKIDWIKV 207

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CWX2	CIA30_MOUSE	No assigned EC number	0.5357	0.8818	0.3414	yes	N/A
Q18726	CIA30_CAEEL	No assigned EC number	0.5526	0.8976	0.3352	yes	N/A
Q9VAI1	CIA30_DROME	No assigned EC number	0.6206	0.8976	0.3851	yes	N/A
Q9Y375	CIA30_HUMAN	No assigned EC number	0.5446	0.8818	0.3425	yes	N/A
Q0MQ84	CIA30_PANTR	No assigned EC number	0.5446	0.8818	0.3425	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	127
pfam08547	156	pfam08547, CIA30, Complex I intermediate-associate	6e-28

>gnl|CDD|219896 pfam08547, CIA30, Complex I intermediate-associated protein 30 (CIA30)

 Score = 99.6 bits (249), Expect = 6e-28
 Identities = 39/94 (41%), Positives = 52/94 (55%), Gaps = 4/94 (4%)

Query: 2   YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSK 61
           Y  L ++ +GDGR+Y  NL T  +F    G  +     T+ G  WQ  KIPFS F    +
Sbjct: 67  YTGLELRVKGDGRTYKFNLKTEDEF---DGLSYQADFDTKPGE-WQTVKIPFSDFKPTFR 122

Query: 62  GRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLEL 95
           GR+ D   PLD  RI  IGL + D+  GPF+LE+
Sbjct: 123 GRVVDDAPPLDLSRIKQIGLLISDKQPGPFELEI 156

This protein is associated with mitochondrial Complex I intermediate-associated protein 30 (CIA30) in human and mouse. The family is also present in Schizosaccharomyces pombe which does not contain the NADH dehydrogenase component of complex I, or many of the other essential subunits. This means it is possible that this family of protein may not be directly involved in oxidative phosphorylation. Length = 156

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	127
KOG2435|consensus	323		99.97
PF08547	157	CIA30: Complex I intermediate-associated protein 3	99.96
PF03425	178	CBM_11: Carbohydrate binding domain (family 11); I	99.02
PF04620	217	FlaA: Flagellar filament outer layer protein Flaa;	94.26

>KOG2435|consensus

Probab=99.97  E-value=3.7e-32  Score=213.28  Aligned_cols=119  Identities=60%  Similarity=1.094  Sum_probs=116.2

Q ss_pred             cceEEEEEeeCCceEEEEEEcCCCCCCcccccEEEEEEeCCCCceEEEEEeCCCceeeecceecCCCCCCCccCccEEEE
Q psy6915           2 YNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSKGRIQDIQNPLDTDRISSIGL   81 (127)
Q Consensus         2 y~gl~lrvrGDGr~Y~l~L~~~~~~~~~~~~~y~~~f~t~~~~~W~tv~iPfs~F~~t~rG~~~~~~~~ld~~~I~~iG~   81 (127)
                      |+.|.||||||||.|.++|+++..++..|+++|+|.+.|++||-||.++|||+.|.+|++||+++.+-.|++.+|.+|||
T Consensus       201 fn~L~LrvRGDGRsy~inihte~~~dq~wndsys~flft~gGp~wq~~KIPfSKff~t~kGriqDrq~e~nl~~vssig~  280 (323)
T KOG2435|consen  201 FNTLYLRVRGDGRSYMINIHTETDFDQRWNDSYSYFLFTRGGPYWQEVKIPFSKFFFTNKGRIQDRQHELNLDKVSSIGF  280 (323)
T ss_pred             cceEEEEEecCCceEEEEecCccchhhhcccceeeEEecCCCCceeEEecchhhheeccccceeecccccCccceeeEeE
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCeeEEEEEcEEEEEeCCCchhhhhhhhccccce
Q psy6915          82 SLVDQNNGPFQLELDYIGIEYDPNHTEEFAYEMYLFENE  120 (127)
Q Consensus        82 ~i~~kq~G~F~LeI~~I~~~~~~~~~~~~~y~~~~~~~~  120 (127)
                      .++++..|||.||||.|+++.+++|+|+|+||+|..+++
T Consensus       281 sl~dk~dGpF~LEIDfIGv~~d~~H~EdFayE~y~~p~~  319 (323)
T KOG2435|consen  281 SLADKVDGPFFLEIDFIGVFTDPAHTEDFAYENYPEPNP  319 (323)
T ss_pred             EEeeccCCcceeeEEEEEEecCCCcccceeeeccccccc
Confidence            999999999999999999999999999999999998875

>PF08547 CIA30: Complex I intermediate-associated protein 30 (CIA30); InterPro: IPR013857 Mitochondrial complex I intermediate-associated protein 30 (CIA30) is present in human and mouse, and also in Schizosaccharomyces pombe (Fission yeast) which does not contain the NADH dehydrogenase component of complex I, or many of the other essential subunits

Probab=99.96  E-value=4.7e-29  Score=182.95  Aligned_cols=91  Identities=43%  Similarity=0.748  Sum_probs=85.6

Q ss_pred             CcceEEEEEeeCCceEEEEEEcCCCCCCcccccEEEEEEeCCCCceEEEEEeCCCceeeecceecCCCCCCCccCccEEE
Q psy6915           1 MYNHLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSKGRIQDIQNPLDTDRISSIG   80 (127)
Q Consensus         1 ~y~gl~lrvrGDGr~Y~l~L~~~~~~~~~~~~~y~~~f~t~~~~~W~tv~iPfs~F~~t~rG~~~~~~~~ld~~~I~~iG   80 (127)
                      .|+||+|+||||||+|+++|+++....   ..+|++.|.|+++ +|++|+|||++|+|++||++++++++||+++|++||
T Consensus        67 ~y~~l~l~vrgdGr~Y~~~l~~~~~~~---~~~y~~~f~t~~~-~w~~v~iPFs~F~~~~rG~~v~~~~~l~~~~I~~ig  142 (157)
T PF08547_consen   67 GYDGLELRVRGDGRTYKVNLRTDNDEP---SDSYQARFQTPPG-EWQTVRIPFSDFVPTFRGRPVDDAPPLDPSRIRSIG  142 (157)
T ss_pred             CCcEEEEEEEcCCceEEEEEEeCCCCC---CceEEEEEeccCC-ccEEEEEEHHHCceeeCCcccCCCCCcChHHceEEE
Confidence            489999999999999999999998742   5699999999866 799999999999999999999999999999999999


Q ss_pred             EEeecCCCeeEEEEE
Q psy6915          81 LSLVDQNNGPFQLEL   95 (127)
Q Consensus        81 ~~i~~kq~G~F~LeI   95 (127)
                      |+++++++|||+|+|
T Consensus       143 ~~~~~~~~G~F~L~I  157 (157)
T PF08547_consen  143 FMISDKQEGPFELEI  157 (157)
T ss_pred             EEEecCCCCCEEEeC
Confidence            999999999999997

This means it is possible that it is not directly involved in oxidative phosphorylation [, ].

>PF03425 CBM_11: Carbohydrate binding domain (family 11); InterPro: IPR005087 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity

Probab=99.02  E-value=1.6e-09  Score=80.92  Aligned_cols=92  Identities=21%  Similarity=0.340  Sum_probs=55.5

Q ss_pred             CcceEEEEEeeCC--ceEEEEEEcCCCCCCcccccEEEEEEeCCCCceEEEEEeCCCceee----ecceecCCCCCCCcc
Q psy6915           1 MYNHLVIKCRGDG--RSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQ----SKGRIQDIQNPLDTD   74 (127)
Q Consensus         1 ~y~gl~lrvrGDG--r~Y~l~L~~~~~~~~~~~~~y~~~f~t~~~~~W~tv~iPfs~F~~t----~rG~~~~~~~~ld~~   74 (127)
                      .|+||++.+||||  ++..|.+++...     ...|.+.+....  +|++|+|||++|.+.    --|...  ..+||++
T Consensus        72 ~~~gl~Fw~k~dgs~~~l~vqi~d~~~-----~e~~~~~~~~~~--~W~~V~IPF~~f~~~~~~~p~g~~~--~~~ldl~  142 (178)
T PF03425_consen   72 GYGGLSFWIKGDGSGNKLRVQIKDGGD-----YEYWEASFTDSS--TWKTVEIPFSDFTQRPDYQPGGWGA--DGTLDLT  142 (178)
T ss_dssp             T--EEEEEEEE------EEEEEEEE-E-----EEEEEEEE---S--S-EEEEEEGGG-EE--S---TT------SS--TT
T ss_pred             cCCcEEEEEEcCCCCcEEEEEEecCCc-----ceeeEeecCCCC--cCEEEEEEHHHcccccccCCCCCCc--ccccChH
Confidence            4899999999665  666666666651     347887777633  599999999999971    112111  2578999


Q ss_pred             CccEEEEEeecCCCeeEEEEEcEEEEEe
Q psy6915          75 RISSIGLSLVDQNNGPFQLELDYIGIEY  102 (127)
Q Consensus        75 ~I~~iG~~i~~kq~G~F~LeI~~I~~~~  102 (127)
                      +|.+|.|.+.+. .+++.|.||.|++|.
T Consensus       143 ~v~~~~~~~~~~-~~~~~~~iDdI~l~~  169 (178)
T PF03425_consen  143 NVWEFAFYVNGG-GGAGTFYIDDIRLYG  169 (178)
T ss_dssp             SEEEEEEEESSS----EEEEEEEEEEE-
T ss_pred             HcEEEEEEEcCC-CceeEEEEEeEEEEe
Confidence            999999998854 445999999999994

A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM11 from CAZY which binds both beta-1,4-glucan and beta-1,3-1,4-mixed linked glucans.; GO: 0008810 cellulase activity, 0030245 cellulose catabolic process; PDB: 1V0A_A.

>PF04620 FlaA: Flagellar filament outer layer protein Flaa; InterPro: IPR006714 Periplasmic flagella are the organelles of spirochete mobility, and are structurally different from the flagella of other motile bacteria

Probab=94.26  E-value=1  Score=35.11  Aligned_cols=100  Identities=13%  Similarity=0.192  Sum_probs=70.2

Q ss_pred             eEEEEEeeCCceEEEEEEcCCCCCCcccccEEEEEEeCCCCceEEEEEeCCCceeeecceecCCCC--CCCccCccEEEE
Q psy6915           4 HLVIKCRGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSKGRIQDIQN--PLDTDRISSIGL   81 (127)
Q Consensus         4 gl~lrvrGDGr~Y~l~L~~~~~~~~~~~~~y~~~f~t~~~~~W~tv~iPfs~F~~t~rG~~~~~~~--~ld~~~I~~iG~   81 (127)
                      .|.+-|.|+|..+.|.+.-.+...    ..++..+-.-.-..|+.+..+.-...|.-|-+.+...+  +.....|+=.||
T Consensus       109 ~I~vWV~G~n~~h~L~v~lrD~~G----~~~~l~~G~L~f~GWK~L~~~iP~~ip~~r~r~~q~~~~yp~~~~~l~f~gf  184 (217)
T PF04620_consen  109 SISVWVYGDNYPHWLEVLLRDAKG----EVHQLPLGSLNFDGWKNLTVNIPPYIPDVRNRILQQYPRYPRSDPGLKFVGF  184 (217)
T ss_pred             EEEEEEECCCCCceEEEEEEcCCC----CEEEEEeeeecCCceeEEEEECCCCCCccceeeeeecccCCCCCCceEEEEE
Confidence            577888999977666665554432    24555554333446999999999999866555544222  334455888899


Q ss_pred             Eeec---CCCeeEEEEEcEEEEEeCCCch
Q psy6915          82 SLVD---QNNGPFQLELDYIGIEYDPNHT  107 (127)
Q Consensus        82 ~i~~---kq~G~F~LeI~~I~~~~~~~~~  107 (127)
                      .|..   ...|+|-+-+|.+++..|..+.
T Consensus       185 rI~~dp~~~~g~f~iYfDdlkv~tD~~~v  213 (217)
T PF04620_consen  185 RIDRDPDERGGDFYIYFDDLKVLTDKFVV  213 (217)
T ss_pred             EEECChhhcCCCEEEEEeeeEEEEEEEEE
Confidence            9975   3689999999999999887655

They reside inside the cell within the periplasmic space, and confer mobility in viscous gel-like media such as connective tissue []. The flagella are composed of an outer sheath of FlaA proteins and a core filament of FlaB proteins. Each species usually has several FlaA protein species [].; GO: 0001539 ciliary or flagellar motility, 0030288 outer membrane-bounded periplasmic space

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	127
1v0a_A	178	Endoglucanase H; carbohydrate binding module, cell	5e-07

>1v0a_A Endoglucanase H; carbohydrate binding module, cellulosome, cellulose degradation, hydrolase, glycosidase; 1.98A {Clostridium thermocellum} SCOP: b.18.1.30 Length = 178

 Score = 45.2 bits (106), Expect = 5e-07
 Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 4/86 (4%)

Query: 10  RGDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSKGR--IQDI 67
            G        +       V  G+ + Y++       W+  +IPFS F  +   +   QD+
Sbjct: 79  DGSANEIRFMIAEKSINGVGDGEHWVYSITPDSS--WKTIEIPFSSFRRRLDYQPPGQDM 136

Query: 68  QNPLDTDRISSIGLSLVDQNNGPFQL 93
              LD D I SI     +  +G F +
Sbjct: 137 SGTLDLDNIDSIHFMYANNKSGKFVV 162

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	127
1v0a_A	178	Endoglucanase H; carbohydrate binding module, cell	99.78
1wmx_A	205	COG3291: FOG: PKD repeat; CBM30, carbohydrate bind	96.11

>1v0a_A Endoglucanase H; carbohydrate binding module, cellulosome, cellulose degradation, hydrolase, glycosidase; 1.98A {Clostridium thermocellum} SCOP: b.18.1.30

Probab=99.78  E-value=1.5e-18  Score=129.55  Aligned_cols=99  Identities=18%  Similarity=0.281  Sum_probs=78.1

Q ss_pred             CcceEEEEEee---CCceEEEEEEcCCCCC-CcccccEEEEEEeCCCCceEEEEEeCCCceeeecceecCCC----CCCC
Q psy6915           1 MYNHLVIKCRG---DGRSYMLNLHTPGDFD-VTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSKGRIQDIQ----NPLD   72 (127)
Q Consensus         1 ~y~gl~lrvrG---DGr~Y~l~L~~~~~~~-~~~~~~y~~~f~t~~~~~W~tv~iPfs~F~~t~rG~~~~~~----~~ld   72 (127)
                      .|+||+|+|+|   ||++|+|+||+..... .+| ..|++.|.+.  +.|++|+|||++|.  +|...++..    ++||
T Consensus        67 ~~~GI~l~vkG~~~nG~~y~~~LR~~~~~~~~~~-~~y~~sF~t~--~~W~~IeIPFs~F~--~r~~~~P~~~~~~~~~d  141 (178)
T 1v0a_A           67 KWLKISFDIKSVDGSANEIRFMIAEKSINGVGDG-EHWVYSITPD--SSWKTIEIPFSSFR--RRLDYQPPGQDMSGTLD  141 (178)
T ss_dssp             TCCEEEEEEEEC---CCCEEEEEEEECTTSSSEE-EEEEEEECCC--SSCEEEEEEGGGCE--ECCSCCCTTCCCCSSCC
T ss_pred             HCCcEEEEEEcCCCCCCEEEEEEeeCCCCCCCCC-eeEEEEecCC--CcCEEEEEEHHHhc--cccccCCCCcccCCCcC
Confidence            38999999999   6999999999976542 133 3999999986  47999999999999  444444332    3899


Q ss_pred             ccCccEEEEEeecCCCeeEEEEEcEEEEEeCCCc
Q psy6915          73 TDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNH  106 (127)
Q Consensus        73 ~~~I~~iG~~i~~kq~G~F~LeI~~I~~~~~~~~  106 (127)
                      +++|++|+||++...+|.  |.|++|++|....+
T Consensus       142 ~~~i~si~~m~G~~~~g~--~~id~I~l~~~~~~  173 (178)
T 1v0a_A          142 LDNIDSIHFMYANNKSGK--FVVDNIKLIGALEH  173 (178)
T ss_dssp             TTSEEEEEEEESSSCCEE--EEEEEEEEECBCCC
T ss_pred             hhHeEEEEEEEcCCCcce--EEEEEEEEEeeecc
Confidence            999999999987644554  99999999965443

>1wmx_A COG3291: FOG: PKD repeat; CBM30, carbohydrate binding module family30, CELJ, sugar BIN protein; 2.00A {Clostridium thermocellum} SCOP: b.18.1.24 PDB: 1wzx_A 2c24_A

Probab=96.11  E-value=0.099  Score=39.23  Aligned_cols=91  Identities=18%  Similarity=0.306  Sum_probs=59.5

Q ss_pred             ceEEEEEee--CCceEEEEEEcCCCCCCcccccEEEEEE----eCCCCceEEEEEeCCCceeeecceecCCCCCCCccCc
Q psy6915           3 NHLVIKCRG--DGRSYMLNLHTPGDFDVTWGDMFTYALY----TRGGPYWQITKIPFSKFFLQSKGRIQDIQNPLDTDRI   76 (127)
Q Consensus         3 ~gl~lrvrG--DGr~Y~l~L~~~~~~~~~~~~~y~~~f~----t~~~~~W~tv~iPfs~F~~t~rG~~~~~~~~ld~~~I   76 (127)
                      .+|++-|||  -|..+.+-+.+.... +..+..-|....    ...+.+||-|.+|+.+| ..      + ...+|+.+.
T Consensus        85 G~leF~IKG~~GGE~~~ig~~D~~~e-~~~g~~~~~~~~~~~yi~VttEwQHvsiPLkdF-M~------e-~td~dpr~~  155 (205)
T 1wmx_A           85 GYLEFDIKGKEGGEDFVIGFRDKVYE-RVYGLEIDVTTVISNYVTVTTDWQHVKIPLRDL-MK------I-NNGFDPSSV  155 (205)
T ss_dssp             CEEEEEEEESSSCCCCEEEEEECCTT-CTTCSSCEEEEEGGGTCCCCSSCEEEEEEGGGT-SC------S-TTCCCTTSE
T ss_pred             CeEEEEEecccCceeEEEEEeccccc-ccCCceeEEEeechheEEeccccEEEEeeHHHh-cc------c-cCCcCcccc
Confidence            368999998  568999999877321 111122222222    12456899999999999 33      1 234555554


Q ss_pred             cEEEEEeecCCCeeEEEEEcEEEEEeCC
Q psy6915          77 SSIGLSLVDQNNGPFQLELDYIGIEYDP  104 (127)
Q Consensus        77 ~~iG~~i~~kq~G~F~LeI~~I~~~~~~  104 (127)
                      .  .|.+.....+||+.-||+|++....
T Consensus       156 ~--~fnlgk~~~~phtVwIDNIkLts~D  181 (205)
T 1wmx_A          156 T--CLVFSKRYADPFTVWFSDIKITSED  181 (205)
T ss_dssp             E--EEEEECSSSCCEEEEEEEEEEECC-
T ss_pred             e--EEEecCCCCCceEEEEeeEEEEecC
Confidence            4  4666655789999999999987543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	127
d1v0aa1	167	b.18.1.30 (A:4-170) Endoglucanase H {Clostridium t	3e-15

>d1v0aa1 b.18.1.30 (A:4-170) Endoglucanase H {Clostridium thermocellum [TaxId: 1515]} Length = 167

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: CBM11
domain: Endoglucanase H
species: Clostridium thermocellum [TaxId: 1515]

 Score = 65.8 bits (160), Expect = 3e-15
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 8/104 (7%)

Query: 2   YNHLVIKCR---GDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFL 58
           +  +    +   G        +       V  G+ + Y++       W+  +IPFS F  
Sbjct: 65  WLKISFDIKSVDGSANEIRFMIAEKSINGVGDGEHWVYSITPDSS--WKTIEIPFSSFRR 122

Query: 59  QS--KGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLE-LDYIG 99
           +   +   QD+   LD D I SI     +  +G F ++ +  IG
Sbjct: 123 RLDYQPPGQDMSGTLDLDNIDSIHFMYANNKSGKFVVDNIKLIG 166

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	127
d1v0aa1	167	Endoglucanase H {Clostridium thermocellum [TaxId:	99.79
d1wmxa_	173	Endoglucanase CelJ {Clostridium thermocellum [TaxI	97.78
d1gu3a_	142	Cellulose-binding domain of cellulase C {Cellulomo	89.2
d2e74g1	27	PetG subunit of the cytochrome b6f complex {Mastig	82.26

>d1v0aa1 b.18.1.30 (A:4-170) Endoglucanase H {Clostridium thermocellum [TaxId: 1515]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: CBM11
domain: Endoglucanase H
species: Clostridium thermocellum [TaxId: 1515]

Probab=99.79  E-value=3.3e-19  Score=128.67  Aligned_cols=98  Identities=21%  Similarity=0.362  Sum_probs=78.2

Q ss_pred             CcceEEEEEe---eCCceEEEEEEcCCCCCCcccccEEEEEEeCCCCceEEEEEeCCCceeeecceec--CCCCCCCccC
Q psy6915           1 MYNHLVIKCR---GDGRSYMLNLHTPGDFDVTWGDMFTYALYTRGGPYWQITKIPFSKFFLQSKGRIQ--DIQNPLDTDR   75 (127)
Q Consensus         1 ~y~gl~lrvr---GDGr~Y~l~L~~~~~~~~~~~~~y~~~f~t~~~~~W~tv~iPfs~F~~t~rG~~~--~~~~~ld~~~   75 (127)
                      .|+||+|+||   |++++|.|+|++...........|.+.|.+ + ++|++|+|||++|+++.+++++  +..++||+++
T Consensus        64 ~~~gi~~~vkg~~G~~~~~~~~l~d~~~~~~~~~~~~~~~f~~-~-~~W~~V~IPF~~F~~~~~~~~~~~~~~~~ldls~  141 (167)
T d1v0aa1          64 KWLKISFDIKSVDGSANEIRFMIAEKSINGVGDGEHWVYSITP-D-SSWKTIEIPFSSFRRRLDYQPPGQDMSGTLDLDN  141 (167)
T ss_dssp             TCCEEEEEEEEC---CCCEEEEEEEECTTSSSEEEEEEEEECC-C-SSCEEEEEEGGGCEECCSCCCTTCCCCSSCCTTS
T ss_pred             cCCeEEEEEECCCCCceEEEEEEEcCCcCCCCcccEEEEEEec-C-CccEEEEEEHHHcccccccCcccCCCccccChHH
Confidence            4899999999   788999999998765432112367777754 3 3799999999999999877765  3467999999


Q ss_pred             ccEEEEEeecCCCeeEEEEEcEEEEEe
Q psy6915          76 ISSIGLSLVDQNNGPFQLELDYIGIEY  102 (127)
Q Consensus        76 I~~iG~~i~~kq~G~F~LeI~~I~~~~  102 (127)
                      |.+|+|++.++++|+|+  ||+|++|.
T Consensus       142 i~~~~~~~~~g~~G~f~--iD~i~l~g  166 (167)
T d1v0aa1         142 IDSIHFMYANNKSGKFV--VDNIKLIG  166 (167)
T ss_dssp             EEEEEEEESSSCCEEEE--EEEEEEEC
T ss_pred             eEEEEEEECCCCCccEE--EEEEEEec
Confidence            99999999999999885  99999983

>d1wmxa_ b.18.1.24 (A:) Endoglucanase CelJ {Clostridium thermocellum [TaxId: 1515]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Family 30 carbohydrate binding module, CBM30 (PKD repeat)
domain: Endoglucanase CelJ
species: Clostridium thermocellum [TaxId: 1515]

Probab=97.78  E-value=0.00013  Score=51.86  Aligned_cols=89  Identities=19%  Similarity=0.299  Sum_probs=58.8

Q ss_pred             eEEEEEeeC--CceEEEEEEcCCCCCCcccccEEEEEE----eCCCCceEEEEEeCCCceeeecceecCCCCCCCccCcc
Q psy6915           4 HLVIKCRGD--GRSYMLNLHTPGDFDVTWGDMFTYALY----TRGGPYWQITKIPFSKFFLQSKGRIQDIQNPLDTDRIS   77 (127)
Q Consensus         4 gl~lrvrGD--Gr~Y~l~L~~~~~~~~~~~~~y~~~f~----t~~~~~W~tv~iPfs~F~~t~rG~~~~~~~~ld~~~I~   77 (127)
                      .|.+.+|+.  +..+++.+.+.....+. +..-.....    .+..++|+++.||+++|....        ..+|++.|+
T Consensus        79 ~L~FdiK~~s~~~~~~igf~~~~~~~~~-~~~~~~~~~~~~~~~vt~eW~~~~ipl~~l~~~~--------~~~dl~~i~  149 (173)
T d1wmxa_          79 YLEFDIKGKEGGEDFVIGFRDKVYERVY-GLEIDVTTVISNYVTVTTDWQHVKIPLRDLMKIN--------NGFDPSSVT  149 (173)
T ss_dssp             EEEEEEEESSSCCCCEEEEEECCTTCTT-CSSCEEEEEGGGTCCCCSSCEEEEEEGGGTSCST--------TCCCTTSEE
T ss_pred             cEEEEEEccCCCcceEEEEEeccccCCC-ceEEecccCCcccceecCceEEEEEEhHHhhccc--------cCcChhHce
Confidence            378888875  35688888776543211 000011111    113458999999999996432        248899998


Q ss_pred             EEEEEeecCCCeeEEEEEcEEEEEeC
Q psy6915          78 SIGLSLVDQNNGPFQLELDYIGIEYD  103 (127)
Q Consensus        78 ~iG~~i~~kq~G~F~LeI~~I~~~~~  103 (127)
                      ++-|..  .+.++|.+-||.|++.++
T Consensus       150 ~i~~~~--~~~~~~~~~iDdIkit~e  173 (173)
T d1wmxa_         150 CLVFSK--RYADPFTVWFSDIKITSE  173 (173)
T ss_dssp             EEEEEC--SSSCCEEEEEEEEEEECC
T ss_pred             EEEEEe--cCCCceEEEEEEEEEecC
Confidence            886554  567899999999999764

>d1gu3a_ b.18.1.14 (A:) Cellulose-binding domain of cellulase C {Cellulomonas fimi [TaxId: 1708]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: CBM4/9
domain: Cellulose-binding domain of cellulase C
species: Cellulomonas fimi [TaxId: 1708]

Probab=89.20  E-value=1.7  Score=27.58  Aligned_cols=52  Identities=13%  Similarity=0.087  Sum_probs=31.8

Q ss_pred             CceEEEEEeCCCceeeecceecCCCCCCCccCccEEEEEeecCCCeeEEEEEcEEEEEe
Q psy6915          44 PYWQITKIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEY  102 (127)
Q Consensus        44 ~~W~tv~iPfs~F~~t~rG~~~~~~~~ld~~~I~~iG~~i~~kq~G~F~LeI~~I~~~~  102 (127)
                      .+|+++.+.|..-.-.-.      .... .....+|.|.+.+....+..+.||+|++-.
T Consensus        90 ~~w~~~~~~FT~~~~~~~------~~~~-~~~~~~l~F~~g~~~~~~~t~~iDdV~L~~  141 (142)
T d1gu3a_          90 SEPRQVTETFTASATYPA------TPAA-DDPEGQIAFQLGGFSADAWTLCLDDVALDS  141 (142)
T ss_dssp             SSCEEEEEEEECSSCBCS------SCBT-TBCCEEEEEECTTSCSSCEEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEecCcccc------cccc-cccceEEEEEeCCCCCCCcEEEEEEEEEEe
Confidence            479999988643222210      0111 123446888877655567899999999854

>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: PetG subunit of the cytochrome b6f complex
family: PetG subunit of the cytochrome b6f complex
domain: PetG subunit of the cytochrome b6f complex
species: Mastigocladus laminosus [TaxId: 83541]

Probab=82.26  E-value=0.15  Score=24.62  Aligned_cols=11  Identities=45%  Similarity=0.670  Sum_probs=9.4

Q ss_pred             hhhhccccceE
Q psy6915         111 AYEMYLFENEV  121 (127)
Q Consensus       111 ~y~~~~~~~~~  121 (127)
                      +|.||++||+.
T Consensus        17 ayqqykrpnel   27 (27)
T d2e74g1          17 AYQQYKRPNEL   27 (27)
T ss_dssp             HHHHTTSCCCT
T ss_pred             HHHHhcCCCCC
Confidence            59999999973