Psyllid ID: psy6917

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130--
Protein Sequence
MWKDEVQDKLYMDPVGDVYPNETKVIWKFNESTLDDWIVTTDSDHNEGLSKASLAIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYEMYLFENEVRGIVNW
Secondary Structure (PSIPRED)
ccccccccEEEEEEcccccccEEEcEEcccccccccEEEEEEcccccccEEEEEEEEccccEEccccEEEEcccccccccccEEEEEEEccccccEEEEEEEEEEEccccccHHHHHHHHccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHccccEEEEccccEEEEEEEcccHcccEEEEEcccccccccEEEEEEEccEEEEcccccEccccccccHHHEEEEEEEEEccccccEEEEEEEEEEEEcccccHHHHHHHHcccccEEEEEcc
Coil and Loop (DISEMBL)
mwkdevqdklymdpvgdvypneTKVIWKFNestlddwivttdsdhneglskaslaipfskfflqskgriqdiqnpldtdrissiglslvdqnngpfqleldyigieydpnhteEFAYEMYLFENEVRGIVNW
Flexible Loop (DISEMBL)
mwkdevqdklymdpvgdvypNETKVIWKFNESTLDDWIVTTDSDHNEGLSKASLAIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYEMYLFENEVRGIVNW
Low Complexity Region (SEG)
MWKDEVQDKLYMDPVGDVYPNETKVIWKFNESTLDDWIVTTDSDHNEGLSKASLAIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYEMYLFENEVRGIVNW
Disordered region (IsUnstruct)
*********LYMDPVGDVYPNETKVIWKFNESTLDDWIVTTDSDHNEGLSKASLAIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYEMYLFENEVRGIV**
Disordered Region (DISOPRED)
MWK*EVQDKLYMDPVGDVYPNETKVIWKFNESTLDDWIVTTDSDHNEGLSKASLAIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYEMYLFENEVRGIVNW
Disordered Region (DISEMBL)
MWKDEVQDKLYMDPVGDVYPNETKVIWKFNESTLDDWIVTTDSDHNEGLSKASLAIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYEMYLFENEVRGIVNW
Disordered Region (DISPRO)
MWKDEVQDKLYMDPVGDVYPNETKVIWKFNESTLDDWIVTTDSDHNEGLSKASLAIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYEMYLFENEVRGIVNW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MWKDEVQDKLYMDPVGDVYPNETKVIWKFNESTLDDWIVTTDSDHNEGLSKASLAIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYEMYLFENEVRGIVNW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	132	2.2.26 [Sep-21-2011]
Q9VAI1	296	Probable complex I interm	yes	N/A	0.492	0.219	0.582	5e-18
Q9CWX2	328	Complex I intermediate-as	yes	N/A	0.484	0.195	0.6	9e-18
Q0MQ84	327	Complex I intermediate-as	yes	N/A	0.492	0.198	0.6	1e-17
Q0MQ83	327	Complex I intermediate-as	N/A	N/A	0.492	0.198	0.6	1e-17
Q0MQ82	327	Complex I intermediate-as	N/A	N/A	0.492	0.198	0.6	1e-17
Q9Y375	327	Complex I intermediate-as	yes	N/A	0.492	0.198	0.6	1e-17
Q18726	340	Probable complex I interm	yes	N/A	0.484	0.188	0.538	5e-13
Q61FQ3	340	Probable complex I interm	N/A	N/A	0.484	0.188	0.538	6e-13

>sp|Q9VAI1|CIA30_DROME Probable complex I intermediate-associated protein 30, mitochondrial OS=Drosophila melanogaster GN=CG7598 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 39/67 (58%), Positives = 51/67 (76%), Gaps = 2/67 (2%)

Query: 56  IPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQN--NGPFQLELDYIGIEYDPNHTE 113
           IPFSKFFL SKGR+QD Q  +  +R++  G S+  +   +GPF LE+DY+G+EYDP+H E
Sbjct: 221 IPFSKFFLSSKGRVQDRQGAIPLNRVTHFGFSVAAKKGMDGPFGLEIDYVGLEYDPSHRE 280

Query: 114 EFAYEMY 120
           EFAYEMY
Sbjct: 281 EFAYEMY 287

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).
Drosophila melanogaster (taxid: 7227)

>sp|Q9CWX2|CIA30_MOUSE Complex I intermediate-associated protein 30, mitochondrial OS=Mus musculus GN=Ndufaf1 PE=2 SV=2

 Score = 88.6 bits (218), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 52/65 (80%)

Query: 54  LAIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTE 113
           + IPFSKFF  ++GR++D+Q PL  D+ISSIG +L D+ +GPF LE+D+IG+  DP HTE
Sbjct: 253 VKIPFSKFFFSNQGRVRDVQGPLVLDKISSIGFTLSDKVDGPFFLEIDFIGVFTDPAHTE 312

Query: 114 EFAYE 118
           EFAYE
Sbjct: 313 EFAYE 317

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Mus musculus (taxid: 10090)

>sp|Q0MQ84|CIA30_PANTR Complex I intermediate-associated protein 30, mitochondrial OS=Pan troglodytes GN=NDUFAF1 PE=2 SV=1

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 52/65 (80%)

Query: 54  LAIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTE 113
           + IPFSKFF  ++GRI+D+Q+ L  D+ISSIG +L D+ +GPF LE+D+IG+  DP HTE
Sbjct: 252 VKIPFSKFFFSNRGRIRDVQHELPLDKISSIGFTLADKVDGPFFLEIDFIGVFTDPAHTE 311

Query: 114 EFAYE 118
           EFAYE
Sbjct: 312 EFAYE 316

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Pan troglodytes (taxid: 9598)

>sp|Q0MQ83|CIA30_GORGO Complex I intermediate-associated protein 30, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFAF1 PE=2 SV=1

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 52/65 (80%)

Query: 54  LAIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTE 113
           + IPFSKFF  ++GRI+D+Q+ L  D+ISSIG +L D+ +GPF LE+D+IG+  DP HTE
Sbjct: 252 VKIPFSKFFFSNRGRIRDVQHELPLDKISSIGFTLADKVDGPFFLEIDFIGVFTDPAHTE 311

Query: 114 EFAYE 118
           EFAYE
Sbjct: 312 EFAYE 316

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Gorilla gorilla gorilla (taxid: 9595)

>sp|Q0MQ82|CIA30_PONPY Complex I intermediate-associated protein 30, mitochondrial OS=Pongo pygmaeus GN=NDUFAF1 PE=2 SV=1

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 52/65 (80%)

Query: 54  LAIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTE 113
           + IPFSKFF  ++GRI+D+Q+ L  D+ISSIG +L D+ +GPF LE+D+IG+  DP HTE
Sbjct: 252 VKIPFSKFFFSNRGRIRDVQHELPLDKISSIGFTLADKVDGPFFLEIDFIGVFTDPAHTE 311

Query: 114 EFAYE 118
           EFAYE
Sbjct: 312 EFAYE 316

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Pongo pygmaeus (taxid: 9600)

>sp|Q9Y375|CIA30_HUMAN Complex I intermediate-associated protein 30, mitochondrial OS=Homo sapiens GN=NDUFAF1 PE=1 SV=2

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 52/65 (80%)

Query: 54  LAIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTE 113
           + IPFSKFF  ++GRI+D+Q+ L  D+ISSIG +L D+ +GPF LE+D+IG+  DP HTE
Sbjct: 252 VKIPFSKFFFSNRGRIRDVQHELPLDKISSIGFTLADKVDGPFFLEIDFIGVFTDPAHTE 311

Query: 114 EFAYE 118
           EFAYE
Sbjct: 312 EFAYE 316

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Homo sapiens (taxid: 9606)

>sp|Q18726|CIA30_CAEEL Probable complex I intermediate-associated protein 30, mitochondrial OS=Caenorhabditis elegans GN=C50B8.3 PE=3 SV=1

 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 46/65 (70%)

Query: 56  IPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEF 115
           IPFSKFF    GRIQD Q  ++ +  SSIG+ L+D+ +G F+LE+DYIG+  D  H E+F
Sbjct: 266 IPFSKFFHTVAGRIQDRQYRVNLEDTSSIGIVLMDRIDGDFRLEIDYIGVYNDTTHVEDF 325

Query: 116 AYEMY 120
           AYE Y
Sbjct: 326 AYETY 330

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Caenorhabditis elegans (taxid: 6239)

>sp|Q61FQ3|CIA30_CAEBR Probable complex I intermediate-associated protein 30, mitochondrial OS=Caenorhabditis briggsae GN=CBG11538 PE=3 SV=1

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 46/65 (70%)

Query: 56  IPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEF 115
           IPFSKFF    GRIQD Q  ++ +  SSIG+ L+D+ +G F+LE+DYIG+  D  H E+F
Sbjct: 266 IPFSKFFHTVAGRIQDRQYRVNLEDTSSIGIVLMDRIDGDFKLEIDYIGVYNDTTHVEDF 325

Query: 116 AYEMY 120
           AYE Y
Sbjct: 326 AYETY 330

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Caenorhabditis briggsae (taxid: 6238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
91087275	307	PREDICTED: similar to CG7598 CG7598-PA [	0.484	0.208	0.676	2e-20
270011209	291	NADH dehydrogenase (ubiquinone) 1 alpha	0.484	0.219	0.676	2e-20
113197941	318	Unknown (protein for MGC:146886) [Xenopu	0.545	0.226	0.630	9e-18
395503379	329	PREDICTED: complex I intermediate-associ	0.492	0.197	0.646	1e-17
62860000	302	NADH dehydrogenase (ubiquinone) 1 alpha	0.507	0.221	0.641	1e-17
332375991	290	unknown [Dendroctonus ponderosae]	0.477	0.217	0.646	1e-17
170048662	316	chaperone protein [Culex quinquefasciatu	0.507	0.212	0.637	1e-17
157133317	317	chaperone protein, putative [Aedes aegyp	0.507	0.211	0.637	2e-17
157103939	317	chaperone protein, putative [Aedes aegyp	0.507	0.211	0.637	2e-17
291242841	273	PREDICTED: CG7598-like [Saccoglossus kow	0.507	0.245	0.611	2e-17

>gi|91087275|ref|XP_975544.1| PREDICTED: similar to CG7598 CG7598-PA [Tribolium castaneum]

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 44/65 (67%), Positives = 57/65 (87%)

Query: 56  IPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEF 115
           IPFSKFF+ SKGR+QD Q+P+  +R+++ G+S+ D+ NGPF LE+DYIGIEYDPNHTEEF
Sbjct: 220 IPFSKFFMASKGRVQDKQHPIALNRVTNFGISIGDKVNGPFSLEIDYIGIEYDPNHTEEF 279

Query: 116 AYEMY 120
           AYE+Y
Sbjct: 280 AYELY 284

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270011209|gb|EFA07657.1| NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1 [Tribolium castaneum]

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 44/65 (67%), Positives = 57/65 (87%)

Query: 56  IPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEF 115
           IPFSKFF+ SKGR+QD Q+P+  +R+++ G+S+ D+ NGPF LE+DYIGIEYDPNHTEEF
Sbjct: 204 IPFSKFFMASKGRVQDKQHPIALNRVTNFGISIGDKVNGPFSLEIDYIGIEYDPNHTEEF 263

Query: 116 AYEMY 120
           AYE+Y
Sbjct: 264 AYELY 268

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|113197941|gb|AAI21514.1| Unknown (protein for MGC:146886) [Xenopus (Silurana) tropicalis]

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 46/73 (63%), Positives = 57/73 (78%), Gaps = 1/73 (1%)

Query: 49  LSKASL-AIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEY 107
           LS   L  IPFSKFFL S+GRIQD Q+PL TD+I+++G +L D+ NGPFQLE+D+IG+  
Sbjct: 242 LSSCCLWQIPFSKFFLSSRGRIQDNQHPLWTDKITAVGFTLGDKANGPFQLEIDFIGLCN 301

Query: 108 DPNHTEEFAYEMY 120
           D  HTEEFAYE Y
Sbjct: 302 DRAHTEEFAYEKY 314

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395503379|ref|XP_003756044.1| PREDICTED: complex I intermediate-associated protein 30, mitochondrial [Sarcophilus harrisii]

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/65 (64%), Positives = 53/65 (81%)

Query: 54  LAIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTE 113
           + IPFSKFF  +KGRIQD Q+P  TD+ISS+G +L D+ NGPF LE+D+IG+ +DP HTE
Sbjct: 256 VKIPFSKFFFSNKGRIQDDQHPFLTDQISSVGFTLADKVNGPFYLEIDFIGVFHDPTHTE 315

Query: 114 EFAYE 118
           EFAYE
Sbjct: 316 EFAYE 320

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|62860000|ref|NP_001017153.1| NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1 [Xenopus (Silurana) tropicalis] gi|89272920|emb|CAJ82283.1| NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1 [Xenopus (Silurana) tropicalis]

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/67 (64%), Positives = 55/67 (82%)

Query: 54  LAIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTE 113
           + IPFSKFFL S+GRIQD Q+PL TD+I+++G +L D+ NGPFQLE+D+IG+  D  HTE
Sbjct: 232 IKIPFSKFFLSSRGRIQDNQHPLWTDKITAVGFTLGDKANGPFQLEIDFIGLCNDRAHTE 291

Query: 114 EFAYEMY 120
           EFAYE Y
Sbjct: 292 EFAYEKY 298

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|332375991|gb|AEE63136.1| unknown [Dendroctonus ponderosae]

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/65 (64%), Positives = 51/65 (78%)

Query: 56  IPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEF 115
           IPFSKFF  SKGRIQD Q  L  +R++S G+S+ D++ G F LE+DYIG+EYDP H EEF
Sbjct: 217 IPFSKFFFSSKGRIQDEQCALPLNRVTSFGISVQDRHGGDFCLEIDYIGVEYDPKHVEEF 276

Query: 116 AYEMY 120
           AYEMY
Sbjct: 277 AYEMY 281

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170048662|ref|XP_001870724.1| chaperone protein [Culex quinquefasciatus] gi|167870702|gb|EDS34085.1| chaperone protein [Culex quinquefasciatus]

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/69 (63%), Positives = 56/69 (81%), Gaps = 2/69 (2%)

Query: 54  LAIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQ--NNGPFQLELDYIGIEYDPNH 111
           + IPFSKFFL SKGR+QD Q P+  +RISS+G S+  +  ++G F+LE DYIG+EYDP+H
Sbjct: 239 VKIPFSKFFLASKGRVQDSQAPVPLNRISSLGFSVGARGGHDGQFRLEFDYIGVEYDPSH 298

Query: 112 TEEFAYEMY 120
           TEEFAYEMY
Sbjct: 299 TEEFAYEMY 307

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157133317|ref|XP_001662831.1| chaperone protein, putative [Aedes aegypti] gi|108870867|gb|EAT35092.1| AAEL012716-PA [Aedes aegypti]

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/69 (63%), Positives = 54/69 (78%), Gaps = 2/69 (2%)

Query: 54  LAIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQ--NNGPFQLELDYIGIEYDPNH 111
           + IPFSKFFL SKGR+QD Q P+  +RISSIG S+  +  + G F+LE DYIG+EYDP+H
Sbjct: 240 VRIPFSKFFLASKGRVQDSQGPVPLNRISSIGFSVGARGGHEGQFRLEFDYIGVEYDPSH 299

Query: 112 TEEFAYEMY 120
            EEFAYEMY
Sbjct: 300 REEFAYEMY 308

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157103939|ref|XP_001648190.1| chaperone protein, putative [Aedes aegypti] gi|108869298|gb|EAT33523.1| AAEL014201-PA [Aedes aegypti]

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/69 (63%), Positives = 53/69 (76%), Gaps = 2/69 (2%)

Query: 54  LAIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNN--GPFQLELDYIGIEYDPNH 111
           + IPFSKFFL SKGR+QD Q P+  +RISSIG S+  +    G F+LE DYIG+EYDP+H
Sbjct: 240 VRIPFSKFFLASKGRVQDSQGPVPLNRISSIGFSVGARGGHEGQFRLEFDYIGVEYDPSH 299

Query: 112 TEEFAYEMY 120
            EEFAYEMY
Sbjct: 300 REEFAYEMY 308

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291242841|ref|XP_002741312.1| PREDICTED: CG7598-like [Saccoglossus kowalevskii]

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 52/67 (77%)

Query: 54  LAIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTE 113
           L IPFSKFFL  +GRIQD Q  +D +R+++IGL++ D  +G F LE+DYIG+ YD  HTE
Sbjct: 198 LTIPFSKFFLTHRGRIQDRQASVDLERVNAIGLTMADAVDGDFALEIDYIGVSYDYTHTE 257

Query: 114 EFAYEMY 120
           EFAYEMY
Sbjct: 258 EFAYEMY 264

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
FB|FBgn0039689	296	CG7598 [Drosophila melanogaste	0.492	0.219	0.582	2.3e-29
ZFIN|ZDB-GENE-050306-9	304	ndufaf1 "NADH dehydrogenase (u	0.492	0.213	0.646	1e-23
UNIPROTKB|E1BZH1	303	NDUFAF1 "Uncharacterized prote	0.507	0.221	0.597	8.8e-23
UNIPROTKB|E2RPE7	328	NDUFAF1 "Uncharacterized prote	0.477	0.192	0.619	2e-21
RGD|1306202	330	Ndufaf1 "NADH dehydrogenase (u	0.477	0.190	0.634	1.4e-17
MGI|MGI:1916952	328	Ndufaf1 "NADH dehydrogenase (u	0.477	0.192	0.619	1.7e-17
UNIPROTKB|Q9Y375	327	NDUFAF1 "Complex I intermediat	0.477	0.192	0.619	2.3e-17
UNIPROTKB|E1BAZ2	328	NDUFAF1 "Uncharacterized prote	0.477	0.192	0.619	4.7e-16

FB|FBgn0039689 CG7598 [Drosophila melanogaster (taxid:7227)]

 Score = 215 (80.7 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
 Identities = 39/67 (58%), Positives = 51/67 (76%)

Query:    56 IPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQN--NGPFQLELDYIGIEYDPNHTE 113
             IPFSKFFL SKGR+QD Q  +  +R++  G S+  +   +GPF LE+DY+G+EYDP+H E
Sbjct:   221 IPFSKFFLSSKGRVQDRQGAIPLNRVTHFGFSVAAKKGMDGPFGLEIDYVGLEYDPSHRE 280

Query:   114 EFAYEMY 120
             EFAYEMY
Sbjct:   281 EFAYEMY 287

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0017004 "cytochrome complex assembly" evidence=NAS

GO:0006119 "oxidative phosphorylation" evidence=ISS

ZFIN|ZDB-GENE-050306-9 ndufaf1 "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1" [Danio rerio (taxid:7955)]

 Score = 225 (84.3 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
 Identities = 42/65 (64%), Positives = 54/65 (83%)

Query:    56 IPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEF 115
             IPFSKFFL S+GRIQD Q+PL  D+I++IG +L D+ +GPFQLE+D+IG+  D  HTEEF
Sbjct:   236 IPFSKFFLSSRGRIQDSQHPLWLDKINTIGFTLGDKADGPFQLEIDFIGLNNDCAHTEEF 295

Query:   116 AYEMY 120
             AYE+Y
Sbjct:   296 AYELY 300

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1BZH1 NDUFAF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 217 (81.4 bits), Expect = 8.8e-23, Sum P(2) = 8.8e-23
 Identities = 40/67 (59%), Positives = 54/67 (80%)

Query:    54 LAIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTE 113
             + IPFSKFFL S+GR+QD Q+P+  D+IS++G +L D+ +GPFQLE+D+IG+  D  HTE
Sbjct:   231 IKIPFSKFFLSSRGRVQDDQHPIWLDKISTLGFTLGDKVDGPFQLEIDFIGLLNDRAHTE 290

Query:   114 EFAYEMY 120
             EFAYE Y
Sbjct:   291 EFAYETY 297

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E2RPE7 NDUFAF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 201 (75.8 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
 Identities = 39/63 (61%), Positives = 49/63 (77%)

Query:    56 IPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEF 115
             IPFSKFF  ++GRI+D Q  L  D+ISSIG +L D+ +GPF LE+D+IG+  DP HTEEF
Sbjct:   255 IPFSKFFYSNQGRIRDAQYQLLLDKISSIGFTLADKVDGPFFLEIDFIGVFTDPAHTEEF 314

Query:   116 AYE 118
             AYE
Sbjct:   315 AYE 317

GO:0005739 "mitochondrion" evidence=IEA

RGD|1306202 Ndufaf1 "NADH dehydrogenase (ubiquinone) complex I, assembly factor 1" [Rattus norvegicus (taxid:10116)]

 Score = 215 (80.7 bits), Expect = 1.4e-17, P = 1.4e-17
 Identities = 40/63 (63%), Positives = 51/63 (80%)

Query:    56 IPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEF 115
             IPFSKFF  ++GRI+D+Q PL  D+ISSIG +L D+ +GPF LE+D+IG+  DP HTEEF
Sbjct:   257 IPFSKFFFSNQGRIRDVQGPLILDKISSIGFTLSDKVDGPFFLEIDFIGVFTDPAHTEEF 316

Query:   116 AYE 118
             AYE
Sbjct:   317 AYE 319

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

MGI|MGI:1916952 Ndufaf1 "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1" [Mus musculus (taxid:10090)]

 Score = 214 (80.4 bits), Expect = 1.7e-17, P = 1.7e-17
 Identities = 39/63 (61%), Positives = 51/63 (80%)

Query:    56 IPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEF 115
             IPFSKFF  ++GR++D+Q PL  D+ISSIG +L D+ +GPF LE+D+IG+  DP HTEEF
Sbjct:   255 IPFSKFFFSNQGRVRDVQGPLVLDKISSIGFTLSDKVDGPFFLEIDFIGVFTDPAHTEEF 314

Query:   116 AYE 118
             AYE
Sbjct:   315 AYE 317

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|Q9Y375 NDUFAF1 "Complex I intermediate-associated protein 30, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 213 (80.0 bits), Expect = 2.3e-17, P = 2.3e-17
 Identities = 39/63 (61%), Positives = 51/63 (80%)

Query:    56 IPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEF 115
             IPFSKFF  ++GRI+D+Q+ L  D+ISSIG +L D+ +GPF LE+D+IG+  DP HTEEF
Sbjct:   254 IPFSKFFFSNRGRIRDVQHELPLDKISSIGFTLADKVDGPFFLEIDFIGVFTDPAHTEEF 313

Query:   116 AYE 118
             AYE
Sbjct:   314 AYE 316

GO:0006461 "protein complex assembly" evidence=NAS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=NAS

GO:0051082 "unfolded protein binding" evidence=NAS

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|E1BAZ2 NDUFAF1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 202 (76.2 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 39/63 (61%), Positives = 49/63 (77%)

Query:    56 IPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEF 115
             IPFSKFF  ++GRI+D Q  L  D+ISSIG +L D+ +GPF LE+D+IG+  DP HTEEF
Sbjct:   255 IPFSKFFFSNQGRIRDAQYQLLLDKISSIGFTLADKVDGPFFLEIDFIGVFTDPAHTEEF 314

Query:   116 AYE 118
             AYE
Sbjct:   315 AYE 317


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.137   0.418    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      132       132   0.00091  102 3  11 22  0.46    31
                                                     30  0.43    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  562 (60 KB)
  Total size of DFA:  148 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  14.09u 0.09s 14.18t   Elapsed:  00:00:43
  Total cpu time:  14.09u 0.09s 14.18t   Elapsed:  00:00:55
  Start:  Thu Aug 15 11:59:16 2013   End:  Thu Aug 15 12:00:11 2013

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CWX2	CIA30_MOUSE	No assigned EC number	0.6	0.4848	0.1951	yes	N/A
Q18726	CIA30_CAEEL	No assigned EC number	0.5384	0.4848	0.1882	yes	N/A
Q9VAI1	CIA30_DROME	No assigned EC number	0.5820	0.4924	0.2195	yes	N/A
Q9Y375	CIA30_HUMAN	No assigned EC number	0.6	0.4924	0.1987	yes	N/A
Q0MQ84	CIA30_PANTR	No assigned EC number	0.6	0.4924	0.1987	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	132
pfam08547	156	pfam08547, CIA30, Complex I intermediate-associate	4e-11

>gnl|CDD|219896 pfam08547, CIA30, Complex I intermediate-associated protein 30 (CIA30)

 Score = 56.4 bits (137), Expect = 4e-11
 Identities = 22/45 (48%), Positives = 28/45 (62%)

Query: 56  IPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLEL 100
           IPFS F    +GR+ D   PLD  RI  IGL + D+  GPF+LE+
Sbjct: 112 IPFSDFKPTFRGRVVDDAPPLDLSRIKQIGLLISDKQPGPFELEI 156

This protein is associated with mitochondrial Complex I intermediate-associated protein 30 (CIA30) in human and mouse. The family is also present in Schizosaccharomyces pombe which does not contain the NADH dehydrogenase component of complex I, or many of the other essential subunits. This means it is possible that this family of protein may not be directly involved in oxidative phosphorylation. Length = 156

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	132
KOG2435|consensus	323		100.0
PF08547	157	CIA30: Complex I intermediate-associated protein 3	99.87
PF03425	178	CBM_11: Carbohydrate binding domain (family 11); I	95.7

>KOG2435|consensus

Probab=100.00  E-value=3.1e-39  Score=266.25  Aligned_cols=125  Identities=50%  Similarity=0.813  Sum_probs=121.4

Q ss_pred             Cchhhhhhhhc---cCceeeecCCCceEEEEEc-CCCCCCeEEeeccccCCccceEEE----------------------
Q psy6917           1 MWKDEVQDKLY---MDPVGDVYPNETKVIWKFN-ESTLDDWIVTTDSDHNEGLSKASL----------------------   54 (132)
Q Consensus         1 ~~~~e~~~~~~---~~~~~~~~~~~~~vlf~F~-~~~l~~W~v~sD~v~GeG~S~a~l----------------------   54 (132)
                      +++.|++.+|+   ++||+++++++.+|+|+|+ +++|+.|+++||+++| |+|+|+|                      
T Consensus        93 ~lkeeIkl~w~~eE~~pllevr~~eakvvf~F~~kEdLdkWtv~sDsd~g-G~StasLe~sd~G~~alf~G~~ss~~~kd  171 (323)
T KOG2435|consen   93 LLKEEIKLHWRGEEGHPLLEVRLEEAKVVFQFRGKEDLDKWTVTSDSDIG-GRSTASLEMSDNGQSALFYGTLSSEAPKD  171 (323)
T ss_pred             HHHHHHHHHhccccCccceeecCCcceEEEEccChhhcceeEeecccccC-CeeeEEEEecCCCcceeeccccccccccC
Confidence            47899999997   8999999999999999999 9999999999999999 9999999                      


Q ss_pred             -----------------------------------------------------------------------------EEe
Q psy6917          55 -----------------------------------------------------------------------------AIP   57 (132)
Q Consensus        55 -----------------------------------------------------------------------------~IP   57 (132)
                                                                                                   +||
T Consensus       172 g~i~RsGyc~Mrs~~RkaF~rk~~~dw~qfn~L~LrvRGDGRsy~inihte~~~dq~wndsys~flft~gGp~wq~~KIP  251 (323)
T KOG2435|consen  172 GEITRSGYCAMRSRPRKAFERKMSYDWSQFNTLYLRVRGDGRSYMINIHTETDFDQRWNDSYSYFLFTRGGPYWQEVKIP  251 (323)
T ss_pred             cceeeeeeeeeeccchhhhcceecccccccceEEEEEecCCceEEEEecCccchhhhcccceeeEEecCCCCceeEEecc
Confidence                                                                                         799


Q ss_pred             CCCceeccCCeecCCCCCCCccCccEEEEEEecCCCCceEEEEeEEEEEeCCCchhhhhhhcccccceE
Q psy6917          58 FSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHTEEFAYEMYLFENEV  126 (132)
Q Consensus        58 fs~F~~t~RGr~~d~q~~L~~~~I~~iGf~I~dkq~GpF~LeId~I~a~~d~~~~ee~aye~y~~~~~~  126 (132)
                      ||+|++|++||++|.|.+||+++|.+|||+++||.+|||.||||+|++.+|++|+|+||||+|..++|.
T Consensus       252 fSKff~t~kGriqDrq~e~nl~~vssig~sl~dk~dGpF~LEIDfIGv~~d~~H~EdFayE~y~~p~~r  320 (323)
T KOG2435|consen  252 FSKFFFTNKGRIQDRQHELNLDKVSSIGFSLADKVDGPFFLEIDFIGVFTDPAHTEDFAYENYPEPNPR  320 (323)
T ss_pred             hhhheeccccceeecccccCccceeeEeEEEeeccCCcceeeEEEEEEecCCCcccceeeecccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999765

>PF08547 CIA30: Complex I intermediate-associated protein 30 (CIA30); InterPro: IPR013857 Mitochondrial complex I intermediate-associated protein 30 (CIA30) is present in human and mouse, and also in Schizosaccharomyces pombe (Fission yeast) which does not contain the NADH dehydrogenase component of complex I, or many of the other essential subunits

Probab=99.87  E-value=4.2e-23  Score=155.44  Aligned_cols=73  Identities=45%  Similarity=0.803  Sum_probs=71.4

Q ss_pred             EEEc-CCCCCCeEEeeccccCCccceEEE---------------------------------------------------
Q psy6917          27 WKFN-ESTLDDWIVTTDSDHNEGLSKASL---------------------------------------------------   54 (132)
Q Consensus        27 f~F~-~~~l~~W~v~sD~v~GeG~S~a~l---------------------------------------------------   54 (132)
                      |+|+ |+++++|++++|+||| |.|+|.+                                                   
T Consensus         1 f~F~~~~~~~~W~~~~D~vmG-G~S~~~~~~~~~~~~~~F~G~ls~~~~~GFa~~r~~~~~~~~dls~y~~l~l~vrgdG   79 (157)
T PF08547_consen    1 FDFNSPQDLENWRVVSDTVMG-GVSTASLEFSPEDGSAVFSGNLSTENNGGFASVRTPSFPSPLDLSGYDGLELRVRGDG   79 (157)
T ss_pred             CcCCCChhhCCeEEEcceEeC-CeEEEEEEEECCCCEEEEEEEEecCCCCceEEEEEccCCCcCCCCCCcEEEEEEEcCC
Confidence            6899 9999999999999999 9999999                                                   


Q ss_pred             --------------------------------EEeCCCceeccCCeecCCCCCCCccCccEEEEEEecCCCCceEEEE
Q psy6917          55 --------------------------------AIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLEL  100 (132)
Q Consensus        55 --------------------------------~IPfs~F~~t~RGr~~d~q~~L~~~~I~~iGf~I~dkq~GpF~LeI  100 (132)
                                                      +|||++|+|++||++++++++||+++|++|||+++|+|+|||+|||
T Consensus        80 r~Y~~~l~~~~~~~~~~y~~~f~t~~~~w~~v~iPFs~F~~~~rG~~v~~~~~l~~~~I~~ig~~~~~~~~G~F~L~I  157 (157)
T PF08547_consen   80 RTYKVNLRTDNDEPSDSYQARFQTPPGEWQTVRIPFSDFVPTFRGRPVDDAPPLDPSRIRSIGFMISDKQEGPFELEI  157 (157)
T ss_pred             ceEEEEEEeCCCCCCceEEEEEeccCCccEEEEEEHHHCceeeCCcccCCCCCcChHHceEEEEEEecCCCCCEEEeC
Confidence                                            8999999999999999999999999999999999999999999997

This means it is possible that it is not directly involved in oxidative phosphorylation [, ].

>PF03425 CBM_11: Carbohydrate binding domain (family 11); InterPro: IPR005087 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity

Probab=95.70  E-value=0.027  Score=43.14  Aligned_cols=52  Identities=23%  Similarity=0.288  Sum_probs=32.9

Q ss_pred             EEEEeCCCcee----ccCCeecCCCCCCCccCccEEEEEEecCCCCceEEEEeEEEEEe
Q psy6917          53 SLAIPFSKFFL----QSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEY  107 (132)
Q Consensus        53 ~l~IPfs~F~~----t~RGr~~d~q~~L~~~~I~~iGf~I~dkq~GpF~LeId~I~a~~  107 (132)
                      .++|||++|..    +--|.-.  ..+||+.+|.+|.|.+... .|++.|.||.|+++.
T Consensus       114 ~V~IPF~~f~~~~~~~p~g~~~--~~~ldl~~v~~~~~~~~~~-~~~~~~~iDdI~l~~  169 (178)
T PF03425_consen  114 TVEIPFSDFTQRPDYQPGGWGA--DGTLDLTNVWEFAFYVNGG-GGAGTFYIDDIRLYG  169 (178)
T ss_dssp             EEEEEGGG-EE--S---TT------SS--TTSEEEEEEEESSS----EEEEEEEEEEE-
T ss_pred             EEEEEHHHcccccccCCCCCCc--ccccChHHcEEEEEEEcCC-CceeEEEEEeEEEEe
Confidence            44999999987    1122111  2457999999999998744 445999999999993

A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM11 from CAZY which binds both beta-1,4-glucan and beta-1,3-1,4-mixed linked glucans.; GO: 0008810 cellulase activity, 0030245 cellulose catabolic process; PDB: 1V0A_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	132
1v0a_A	178	Endoglucanase H; carbohydrate binding module, cell	97.95

>1v0a_A Endoglucanase H; carbohydrate binding module, cellulosome, cellulose degradation, hydrolase, glycosidase; 1.98A {Clostridium thermocellum} SCOP: b.18.1.30

Probab=97.95  E-value=1.1e-05  Score=62.43  Aligned_cols=56  Identities=29%  Similarity=0.397  Sum_probs=46.0

Q ss_pred             EEEEeCCCceeccCCeecCCCC----CCCccCccEEEEEEecCCCCceEEEEeEEEEEeCCCch
Q psy6917          53 SLAIPFSKFFLQSKGRIQDIQN----PLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYDPNHT  112 (132)
Q Consensus        53 ~l~IPfs~F~~t~RGr~~d~q~----~L~~~~I~~iGf~I~dkq~GpF~LeId~I~a~~d~~~~  112 (132)
                      .++|||++|.  ||-+.|+..+    +||+++|++|+|+++...+|.  |.||+|+++.-..|.
T Consensus       115 ~IeIPFs~F~--~r~~~~P~~~~~~~~~d~~~i~si~~m~G~~~~g~--~~id~I~l~~~~~~~  174 (178)
T 1v0a_A          115 TIEIPFSSFR--RRLDYQPPGQDMSGTLDLDNIDSIHFMYANNKSGK--FVVDNIKLIGALEHH  174 (178)
T ss_dssp             EEEEEGGGCE--ECCSCCCTTCCCCSSCCTTSEEEEEEEESSSCCEE--EEEEEEEEECBCCCC
T ss_pred             EEEEEHHHhc--cccccCCCCcccCCCcChhHeEEEEEEEcCCCcce--EEEEEEEEEeeeccc
Confidence            3499999999  7777766544    899999999999988766666  899999999777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	132
d1v0aa1	167	b.18.1.30 (A:4-170) Endoglucanase H {Clostridium t	2e-05

>d1v0aa1 b.18.1.30 (A:4-170) Endoglucanase H {Clostridium thermocellum [TaxId: 1515]} Length = 167

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: CBM11
domain: Endoglucanase H
species: Clostridium thermocellum [TaxId: 1515]

 Score = 40.0 bits (93), Expect = 2e-05
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 56  IPFSKFFLQS--KGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLE-LDYIG 104
           IPFS F  +   +   QD+   LD D I SI     +  +G F ++ +  IG
Sbjct: 115 IPFSSFRRRLDYQPPGQDMSGTLDLDNIDSIHFMYANNKSGKFVVDNIKLIG 166

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	132
d1v0aa1	167	Endoglucanase H {Clostridium thermocellum [TaxId:	99.0
d1wmxa_	173	Endoglucanase CelJ {Clostridium thermocellum [TaxI	91.04

>d1v0aa1 b.18.1.30 (A:4-170) Endoglucanase H {Clostridium thermocellum [TaxId: 1515]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: CBM11
domain: Endoglucanase H
species: Clostridium thermocellum [TaxId: 1515]

Probab=99.00  E-value=3.7e-10  Score=82.48  Aligned_cols=51  Identities=31%  Similarity=0.487  Sum_probs=45.2

Q ss_pred             EEEeCCCceeccCCeec--CCCCCCCccCccEEEEEEecCCCCceEEEEeEEEEE
Q psy6917          54 LAIPFSKFFLQSKGRIQ--DIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIE  106 (132)
Q Consensus        54 l~IPfs~F~~t~RGr~~--d~q~~L~~~~I~~iGf~I~dkq~GpF~LeId~I~a~  106 (132)
                      ++|||++|.++.+++.+  +..++||+++|.+|+|+++++++|+|+  ||+|+++
T Consensus       113 V~IPF~~F~~~~~~~~~~~~~~~~ldls~i~~~~~~~~~g~~G~f~--iD~i~l~  165 (167)
T d1v0aa1         113 IEIPFSSFRRRLDYQPPGQDMSGTLDLDNIDSIHFMYANNKSGKFV--VDNIKLI  165 (167)
T ss_dssp             EEEEGGGCEECCSCCCTTCCCCSSCCTTSEEEEEEEESSSCCEEEE--EEEEEEE
T ss_pred             EEEEHHHcccccccCcccCCCccccChHHeEEEEEEECCCCCccEE--EEEEEEe
Confidence            39999999999888765  467799999999999999999999885  8999886

>d1wmxa_ b.18.1.24 (A:) Endoglucanase CelJ {Clostridium thermocellum [TaxId: 1515]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Family 30 carbohydrate binding module, CBM30 (PKD repeat)
domain: Endoglucanase CelJ
species: Clostridium thermocellum [TaxId: 1515]

Probab=91.04  E-value=0.72  Score=32.85  Aligned_cols=44  Identities=18%  Similarity=0.349  Sum_probs=34.9

Q ss_pred             EEeCCCceeccCCeecCCCCCCCccCccEEEEEEecCCCCceEEEEeEEEEEeC
Q psy6917          55 AIPFSKFFLQSKGRIQDIQNPLDTDRISSIGLSLVDQNNGPFQLELDYIGIEYD  108 (132)
Q Consensus        55 ~IPfs~F~~t~RGr~~d~q~~L~~~~I~~iGf~I~dkq~GpF~LeId~I~a~~d  108 (132)
                      +||+++|.....        .+|+++|+++-|..  ...++|.+-||.|++..+
T Consensus       130 ~ipl~~l~~~~~--------~~dl~~i~~i~~~~--~~~~~~~~~iDdIkit~e  173 (173)
T d1wmxa_         130 KIPLRDLMKINN--------GFDPSSVTCLVFSK--RYADPFTVWFSDIKITSE  173 (173)
T ss_dssp             EEEGGGTSCSTT--------CCCTTSEEEEEEEC--SSSCCEEEEEEEEEEECC
T ss_pred             EEEhHHhhcccc--------CcChhHceEEEEEe--cCCCceEEEEEEEEEecC
Confidence            999999964333        37899998886654  577899999999999754