Psyllid ID: psy694

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300------
MFIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTGEYEWVKVETHYHHVTSRELMWS
cEEEEHHHHHHHHcccccccccccccccccccEEEEcHHHHHHHHHHHHHHHHHcccHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEccccccccccccccEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHcccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHcccHHHHHHHcccccccccccccccccccccccc
cEEEEEEHHHHHHcccHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcHHHHHHHHHHcHHHEEEHEEHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHEEEccccEEEEcHHHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcEEEccccccccccccccccccccccccc
MFIVLSTVALTlntipslqhkdkagnpidnpkLAIVEAVCITWFSVEYLLRLgaspekwkffkgglnvidLLAIMPYYISLFLLesnstsneqEVQTRTDQFQDVRRVVQVFRIMRILRILKLARhstglqslgFTLRNSYKELGLLMLFLAMGVLIFSSLAYfaekdehdtkfvsipeTFWWAGITMTtvgygdicpttplgkmigsvcCVCGVlvialpipiiVNNFAEFYKNQMRREKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTGEYEWVKVETHYHHVTSRELMWS
MFIVLSTVALTLntipslqhkdkagnpidnPKLAIVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQtrtdqfqdvrrVVQVFRIMRILRILKlarhstglqslgFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREAMErakregsivsfhhvNLRDAFAKSMDLIDVIVDTGEYEWVKVETHYhhvtsrelmws
MFIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTdqfqdvrrvvqvfrIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGvlvialpipiivNNFAEFYKNQmrrekalkrreamerakreGSIVSFHHVNLRDAFAKSMDLIDVIVDTGEYEWVKVETHYHHVTSRELMWS
*FIVLSTVALTLNTIPSLQH*****NPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLE***************QFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFAEFYKN*********************SIVSFHHVNLRDAFAKSMDLIDVIVDTGEYEWVKVETHYHHVTS******
MFIVLSTVALTLNTIPSLQHKDKA*NPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLESNS**********TDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFAEFYK**********************************************************************W*
MFIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLESNS************QFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTGEYEWVKVETHYHHVTSRELMWS
MFIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLESNS********TRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDT***********************
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SSSSSSSSSSSSSSSSSoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MFIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTGEYEWVKVETHYHHVTSRELMWS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query306 2.2.26 [Sep-21-2011]
P17970 985 Potassium voltage-gated c no N/A 0.901 0.280 0.838 1e-143
Q4ZHA6 911 Potassium voltage-gated c yes N/A 0.960 0.322 0.684 1e-119
Q95L11 911 Potassium voltage-gated c yes N/A 0.960 0.322 0.680 1e-118
Q63099 907 Potassium voltage-gated c yes N/A 0.960 0.324 0.677 1e-117
A6H8H5 907 Potassium voltage-gated c yes N/A 0.960 0.324 0.677 1e-117
Q14721 858 Potassium voltage-gated c yes N/A 0.960 0.342 0.661 1e-117
P15387 857 Potassium voltage-gated c no N/A 0.960 0.343 0.661 1e-116
Q03717 857 Potassium voltage-gated c no N/A 0.960 0.343 0.661 1e-116
Q9MZ19 858 Potassium voltage-gated c no N/A 0.960 0.342 0.661 1e-116
Q92953 911 Potassium voltage-gated c no N/A 0.960 0.322 0.671 1e-115
>sp|P17970|KCNAB_DROME Potassium voltage-gated channel protein Shab OS=Drosophila melanogaster GN=Shab PE=1 SV=2 Back     alignment and function desciption
 Score =  506 bits (1303), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 239/285 (83%), Positives = 264/285 (92%), Gaps = 9/285 (3%)

Query: 1   MFIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWK 60
           +FIVLST+ALTLNT+P LQH D  G P DNP+LA+VEAVCITWF++EY+LR  ASP+KWK
Sbjct: 443 LFIVLSTIALTLNTLPQLQHIDN-GTPQDNPQLAMVEAVCITWFTLEYILRFSASPDKWK 501

Query: 61  FFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRI 120
           FFKGGLN+IDLLAI+PY++SLFLLE+N  +        TDQFQDVRRVVQVFRIMRILR+
Sbjct: 502 FFKGGLNIIDLLAILPYFVSLFLLETNKNA--------TDQFQDVRRVVQVFRIMRILRV 553

Query: 121 LKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPET 180
           LKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDE DTKFVSIPE 
Sbjct: 554 LKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEKDTKFVSIPEA 613

Query: 181 FWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFAEFYKNQMRRE 240
           FWWAGITMTTVGYGDICPTT LGK+IG+VCC+CGVLV+ALPIPIIVNNFAEFYKNQMRRE
Sbjct: 614 FWWAGITMTTVGYGDICPTTALGKVIGTVCCICGVLVVALPIPIIVNNFAEFYKNQMRRE 673

Query: 241 KALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTGE 285
           KALKRREA++RAKREGSIVSFHH+NL+DAFAKSMDLIDVIVDTG+
Sbjct: 674 KALKRREALDRAKREGSIVSFHHINLKDAFAKSMDLIDVIVDTGK 718
Mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.
Drosophila melanogaster (taxid: 7227)
>sp|Q4ZHA6|KCNB2_BOVIN Potassium voltage-gated channel subfamily B member 2 OS=Bos taurus GN=KCNB2 PE=2 SV=1 Back     alignment and function description
>sp|Q95L11|KCNB2_RABIT Potassium voltage-gated channel subfamily B member 2 OS=Oryctolagus cuniculus GN=KCNB2 PE=2 SV=1 Back     alignment and function description
>sp|Q63099|KCNB2_RAT Potassium voltage-gated channel subfamily B member 2 OS=Rattus norvegicus GN=Kcnb2 PE=2 SV=2 Back     alignment and function description
>sp|A6H8H5|KCNB2_MOUSE Potassium voltage-gated channel subfamily B member 2 OS=Mus musculus GN=Kcnb2 PE=2 SV=2 Back     alignment and function description
>sp|Q14721|KCNB1_HUMAN Potassium voltage-gated channel subfamily B member 1 OS=Homo sapiens GN=KCNB1 PE=1 SV=2 Back     alignment and function description
>sp|P15387|KCNB1_RAT Potassium voltage-gated channel subfamily B member 1 OS=Rattus norvegicus GN=Kcnb1 PE=1 SV=3 Back     alignment and function description
>sp|Q03717|KCNB1_MOUSE Potassium voltage-gated channel subfamily B member 1 OS=Mus musculus GN=Kcnb1 PE=1 SV=2 Back     alignment and function description
>sp|Q9MZ19|KCNB1_RABIT Potassium voltage-gated channel subfamily B member 1 OS=Oryctolagus cuniculus GN=KCNB1 PE=2 SV=1 Back     alignment and function description
>sp|Q92953|KCNB2_HUMAN Potassium voltage-gated channel subfamily B member 2 OS=Homo sapiens GN=KCNB2 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query306
195377926 1099 GJ13599 [Drosophila virilis] gi|19415489 0.901 0.251 0.849 1e-142
320545506 1607 shaker cognate b, isoform M [Drosophila 0.901 0.171 0.845 1e-142
340719848 905 PREDICTED: potassium voltage-gated chann 0.901 0.304 0.855 1e-142
345495309 1041 PREDICTED: hypothetical protein LOC10012 0.901 0.265 0.855 1e-142
350416884 616 PREDICTED: potassium voltage-gated chann 0.901 0.448 0.852 1e-141
320545508 1537 shaker cognate b, isoform H [Drosophila 0.898 0.178 0.848 1e-141
320545510 1602 shaker cognate b, isoform I [Drosophila 0.908 0.173 0.839 1e-141
158459 924 Shab11 protein [Drosophila melanogaster] 0.901 0.298 0.835 1e-141
110767819 742 PREDICTED: potassium voltage-gated chann 0.901 0.371 0.855 1e-141
17380406 985 RecName: Full=Potassium voltage-gated ch 0.901 0.280 0.838 1e-141
>gi|195377926|ref|XP_002047738.1| GJ13599 [Drosophila virilis] gi|194154896|gb|EDW70080.1| GJ13599 [Drosophila virilis] Back     alignment and taxonomy information
 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 242/285 (84%), Positives = 266/285 (93%), Gaps = 9/285 (3%)

Query: 1   MFIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWK 60
           +FIVLST+ALTLNT+P LQH D  G+P DNP+LA+VEAVCITWF++EY+LR  ASP+KWK
Sbjct: 516 LFIVLSTIALTLNTLPQLQHIDN-GSPQDNPQLAMVEAVCITWFTLEYILRFSASPDKWK 574

Query: 61  FFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRI 120
           FFKGGLN+IDLLAI+PY++SLFLLE+N  +        TDQFQDVRRVVQVFRIMRILRI
Sbjct: 575 FFKGGLNIIDLLAILPYFVSLFLLETNKNA--------TDQFQDVRRVVQVFRIMRILRI 626

Query: 121 LKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPET 180
           LKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDE DTKFVSIPET
Sbjct: 627 LKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEKDTKFVSIPET 686

Query: 181 FWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFAEFYKNQMRRE 240
           FWWAGITMTTVGYGDI PTTPLGK+IG+VCC+CGVLVIALPIPIIVNNFAEFYKNQMRRE
Sbjct: 687 FWWAGITMTTVGYGDIYPTTPLGKVIGTVCCICGVLVIALPIPIIVNNFAEFYKNQMRRE 746

Query: 241 KALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTGE 285
           KALKRREA++RAKREGSIVSFHH+NL+DAFAKSMDLIDVIVDTG+
Sbjct: 747 KALKRREALDRAKREGSIVSFHHINLKDAFAKSMDLIDVIVDTGK 791

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|320545506|ref|NP_001189037.1| shaker cognate b, isoform M [Drosophila melanogaster] gi|318069120|gb|ADV37474.1| shaker cognate b, isoform M [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|340719848|ref|XP_003398357.1| PREDICTED: potassium voltage-gated channel protein Shab-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|345495309|ref|XP_001606895.2| PREDICTED: hypothetical protein LOC100123278 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|350416884|ref|XP_003491151.1| PREDICTED: potassium voltage-gated channel protein Shab-like, partial [Bombus impatiens] Back     alignment and taxonomy information
>gi|320545508|ref|NP_001189038.1| shaker cognate b, isoform H [Drosophila melanogaster] gi|318069121|gb|ADV37475.1| shaker cognate b, isoform H [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|320545510|ref|NP_001189039.1| shaker cognate b, isoform I [Drosophila melanogaster] gi|442629826|ref|NP_001261345.1| shaker cognate b, isoform N [Drosophila melanogaster] gi|318069122|gb|ADV37476.1| shaker cognate b, isoform I [Drosophila melanogaster] gi|440215222|gb|AGB94040.1| shaker cognate b, isoform N [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|158459|gb|AAA28896.1| Shab11 protein [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|110767819|ref|XP_393546.3| PREDICTED: potassium voltage-gated channel protein Shab-like [Apis mellifera] Back     alignment and taxonomy information
>gi|17380406|sp|P17970.2|KCNAB_DROME RecName: Full=Potassium voltage-gated channel protein Shab Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query306
FB|FBgn0262593 985 Shab "Shaker cognate b" [Droso 0.901 0.280 0.694 1.4e-101
UNIPROTKB|G3X8A0 911 KCNB2 "Potassium voltage-gated 0.960 0.322 0.566 6.4e-83
UNIPROTKB|Q4ZHA6 911 KCNB2 "Potassium voltage-gated 0.960 0.322 0.566 6.4e-83
UNIPROTKB|F1RWI2 773 KCNB2 "Uncharacterized protein 0.960 0.380 0.563 2.2e-82
RGD|621349 907 Kcnb2 "potassium voltage gated 0.960 0.324 0.560 7.4e-82
UNIPROTKB|F1LVV2 720 Kcnb2 "Potassium voltage-gated 0.960 0.408 0.560 7.4e-82
UNIPROTKB|Q63099 907 Kcnb2 "Potassium voltage-gated 0.960 0.324 0.560 7.4e-82
MGI|MGI:99632 907 Kcnb2 "potassium voltage gated 0.960 0.324 0.560 1.5e-81
UNIPROTKB|E1BYX3 855 KCNB1 "Uncharacterized protein 0.960 0.343 0.547 4.1e-81
UNIPROTKB|E2QY00 858 KCNB1 "Uncharacterized protein 0.960 0.342 0.543 4.1e-81
FB|FBgn0262593 Shab "Shaker cognate b" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1007 (359.5 bits), Expect = 1.4e-101, P = 1.4e-101
 Identities = 198/285 (69%), Positives = 221/285 (77%)

Query:     1 MFIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWK 60
             +FIVLST+ALTLNT+P LQH D  G P DNP+LA+VEAVCITWF++EY+LR  ASP+KWK
Sbjct:   443 LFIVLSTIALTLNTLPQLQHIDN-GTPQDNPQLAMVEAVCITWFTLEYILRFSASPDKWK 501

Query:    61 FFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTXXXXXXXXXXXXXXIMRILRI 120
             FFKGGLN+IDLLAI+PY++SLFLLE+N  + +Q    R               IMRILR+
Sbjct:   502 FFKGGLNIIDLLAILPYFVSLFLLETNKNATDQFQDVRRVVQVFR--------IMRILRV 553

Query:   121 LKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPET 180
             LKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDE DTKFVSIPE 
Sbjct:   554 LKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEKDTKFVSIPEA 613

Query:   181 FWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGXXXXXXXXXXXXNNFAEFYKNQXXXX 240
             FWWAGITMTTVGYGDICPTT LGK+IG+VCC+CG            NNFAEFYKNQ    
Sbjct:   614 FWWAGITMTTVGYGDICPTTALGKVIGTVCCICGVLVVALPIPIIVNNFAEFYKNQMRRE 673

Query:   241 XXXXXXXXXXXXXXXGSIVSFHHVNLRDAFAKSMDLIDVIVDTGE 285
                            GSIVSFHH+NL+DAFAKSMDLIDVIVDTG+
Sbjct:   674 KALKRREALDRAKREGSIVSFHHINLKDAFAKSMDLIDVIVDTGK 718
GO:0005886 "plasma membrane" evidence=ISS
GO:0006813 "potassium ion transport" evidence=IEA;NAS;TAS
GO:0016021 "integral to membrane" evidence=NAS
GO:0005249 "voltage-gated potassium channel activity" evidence=NAS;TAS
GO:0008076 "voltage-gated potassium channel complex" evidence=IEA;TAS
GO:0007268 "synaptic transmission" evidence=IMP
GO:0055085 "transmembrane transport" evidence=IEA
GO:0051260 "protein homooligomerization" evidence=IEA
GO:0005251 "delayed rectifier potassium channel activity" evidence=IBA;IDA
GO:0008345 "larval locomotory behavior" evidence=IMP
GO:0001508 "regulation of action potential" evidence=IMP
GO:0060025 "regulation of synaptic activity" evidence=IMP
GO:0008016 "regulation of heart contraction" evidence=IMP
GO:0048812 "neuron projection morphogenesis" evidence=IMP
UNIPROTKB|G3X8A0 KCNB2 "Potassium voltage-gated channel subfamily B member 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q4ZHA6 KCNB2 "Potassium voltage-gated channel subfamily B member 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1RWI2 KCNB2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|621349 Kcnb2 "potassium voltage gated channel, Shab-related subfamily, member 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LVV2 Kcnb2 "Potassium voltage-gated channel subfamily B member 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q63099 Kcnb2 "Potassium voltage-gated channel subfamily B member 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:99632 Kcnb2 "potassium voltage gated channel, Shab-related subfamily, member 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1BYX3 KCNB1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2QY00 KCNB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q63099KCNB2_RATNo assigned EC number0.67750.96070.3241yesN/A
Q95L11KCNB2_RABITNo assigned EC number0.68070.96070.3227yesN/A
Q14721KCNB1_HUMANNo assigned EC number0.66120.96070.3426yesN/A
A6H8H5KCNB2_MOUSENo assigned EC number0.67750.96070.3241yesN/A
Q4ZHA6KCNB2_BOVINNo assigned EC number0.68400.96070.3227yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query306
pfam00520194 pfam00520, Ion_trans, Ion transport protein 5e-31
pfam0788574 pfam07885, Ion_trans_2, Ion channel 1e-09
PRK10537393 PRK10537, PRK10537, voltage-gated potassium channe 8e-05
>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein Back     alignment and domain information 
 Score =  114 bits (288), Expect = 5e-31
 Identities = 63/208 (30%), Positives = 97/208 (46%), Gaps = 31/208 (14%)

Query: 35  IVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQE 94
           I++ V    F++E LL+  A   K K+F+   N++D L ++P  +SL L      S    
Sbjct: 1   ILDYVFTVIFTLEMLLKFIALGFKRKYFRSPWNILDFLVVLPSLVSLILFLLGEDSG--- 57

Query: 95  VQTRTDQFQDVRRVVQVFRIMRILRILKLAR-HSTGLQSLGFTLRNSYKELGLLMLFLAM 153
                     + RV+++ R++R+LR+L+      T LQSLG +L+ S   L LL+L L  
Sbjct: 58  ----------LLRVLRLLRLLRLLRLLRRFPGLRTLLQSLGRSLK-SLLNLLLLLLLLLF 106

Query: 154 GVLIFSSLAYFAEKDEHDTK----------FVSIPETFWWAGITMTTVGYGDI-----CP 198
              I     +  E D+   K          F S  E   W   T+TT G+GD+      P
Sbjct: 107 IFAIIGVQLFGGELDKCCDKNENPINGNSNFDSYGEALLWLFRTLTTEGWGDVMYDTLVP 166

Query: 199 TTPLGKMIG-SVCCVCGVLVIALPIPII 225
            T LGK+       + GVL++ L I +I
Sbjct: 167 GTVLGKIFFVIFIILGGVLLLNLLIGVI 194

This family contains Sodium, Potassium, Calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not the Pfam family due to it lacking the first four helices. Length = 194
>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel Back     alignment and domain information
>gnl|CDD|236711 PRK10537, PRK10537, voltage-gated potassium channel; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 306
KOG3713|consensus477 100.0
KOG1545|consensus507 100.0
KOG1419|consensus 654 99.95
KOG4390|consensus 632 99.93
PLN03192 823 Voltage-dependent potassium channel; Provisional 99.93
KOG0498|consensus 727 99.91
KOG2302|consensus 1956 99.87
KOG0501|consensus 971 99.83
PF00520200 Ion_trans: Ion transport protein calcium channel s 99.83
KOG1420|consensus 1103 99.78
KOG2301|consensus 1592 99.71
KOG2301|consensus 1592 99.71
KOG0500|consensus 536 99.68
KOG2302|consensus 1956 99.6
PLN03223 1634 Polycystin cation channel protein; Provisional 99.45
PRK10537393 voltage-gated potassium channel; Provisional 99.44
PF0788579 Ion_trans_2: Ion channel; InterPro: IPR013099 This 99.44
KOG0499|consensus 815 99.26
KOG3599|consensus798 99.02
KOG4404|consensus350 98.96
PF08016425 PKD_channel: Polycystin cation channel; InterPro: 98.96
KOG3684|consensus489 98.88
KOG1418|consensus 433 98.54
KOG3193|consensus 1087 98.51
TIGR00870743 trp transient-receptor-potential calcium channel p 98.47
PF01007 336 IRK: Inward rectifier potassium channel; InterPro: 98.25
KOG4404|consensus 350 97.71
KOG3609|consensus 822 97.49
KOG1418|consensus433 97.49
KOG3676|consensus782 97.06
KOG3614|consensus 1381 97.03
KOG3827|consensus 400 96.76
KOG0510|consensus929 95.9
KOG3533|consensus2706 95.76
PF00060148 Lig_chan: Ligand-gated ion channel; InterPro: IPR0 92.03
PF00520200 Ion_trans: Ion transport protein calcium channel s 86.14
>KOG3713|consensus Back     alignment and domain information 
Probab=100.00  E-value=8.6e-41  Score=299.15  Aligned_cols=241  Identities=59%  Similarity=1.022  Sum_probs=217.3

Q ss_pred             ChhhHHHHHHHhccccccccccCC----------CCCCCchhHHHHHHHHHHHHHHHHHHHhcccchhhhhccccchhHh
Q psy694            2 FIVLSTVALTLNTIPSLQHKDKAG----------NPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDL   71 (306)
Q Consensus         2 ~i~~~~i~~~l~t~~~~~~~~~~~----------~~~~~~~~~i~~~i~~~~F~~e~~l~~~~~~~~~~y~~~~~~~~D~   71 (306)
                      +++++++.+|+.|+|.++.....+          ....+..+.++|.++.++|++|+++|+..+++|.+|+|+..|++|+
T Consensus       201 FVlvSiv~lcL~T~pe~q~~~~~~~~~~~~~~~~~~~~~p~l~~vE~vCi~WFT~E~llR~~~~P~k~~F~k~pLNIIDl  280 (477)
T KOG3713|consen  201 FVLVSIVGLCLGTLPEFQVPDKQGEGLLVNVEKIESEPHPILTYVETVCIAWFTFEYLLRFLVAPNKLEFFKSPLNIIDL  280 (477)
T ss_pred             HHHHHHHHHHHcCCHhhhchhhccccccccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHcCchHHHHHhCcchHHHH
Confidence            578999999999999988877664          3445788999999999999999999999999999999999999999


Q ss_pred             HhhhhHHHHHHHhhcCCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy694           72 LAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFL  151 (306)
Q Consensus        72 ~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lrllRllR~~rl~~~~~~~~~l~~~~~~~~~~l~~~~l~~  151 (306)
                      ++++|.++++........        ....+.+...++|++|++|++|++|+.|+..++|.+..+++++.+.+..+++++
T Consensus       281 lAIlPFYielll~~~~~~--------~~~~l~~~~~vvrvlR~lRI~RI~KLaRhS~GLr~lg~Tlr~S~~ElglLllfL  352 (477)
T KOG3713|consen  281 LAILPFYLELLLTLFGGE--------SLKELENAGLVVRVLRVLRILRIFKLARHSTGLRTLGLTLRRSYRELGLLLLFL  352 (477)
T ss_pred             HHHHHHHHHHHHHHhccc--------hHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999877544331        112345556889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcccCCCCccCccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694          152 AMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFAE  231 (306)
Q Consensus       152 ~~~~~~~a~~~~~~~~~~~~~~f~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i~~i~~~~~~  231 (306)
                      ++++.+||.+.|+.|+++++.+|.+.+.++||+++|||||||||.+|.|..|++++..-++.|+.++++.+.+|.++|++
T Consensus       353 ~~GI~iFStlvY~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~  432 (477)
T KOG3713|consen  353 AVGIVIFSTLVYFAEKDEPDTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSM  432 (477)
T ss_pred             HHHHHHHHHHHHHhhhcCCCCCCccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy694          232 FYKNQMRREKALKRREAME  250 (306)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~  250 (306)
                      .+++.+.+++..++++...
T Consensus       433 ~y~~~k~~~~~~~~~~~~~  451 (477)
T KOG3713|consen  433 YYSELKAREKAPKRREALE  451 (477)
T ss_pred             HHHHHHHHHHhhhhhcccc
Confidence            9988877776666655443

>KOG1545|consensus Back     alignment and domain information
>KOG1419|consensus Back     alignment and domain information
>KOG4390|consensus Back     alignment and domain information
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>KOG0498|consensus Back     alignment and domain information
>KOG2302|consensus Back     alignment and domain information
>KOG0501|consensus Back     alignment and domain information
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins Back     alignment and domain information
>KOG1420|consensus Back     alignment and domain information
>KOG2301|consensus Back     alignment and domain information
>KOG2301|consensus Back     alignment and domain information
>KOG0500|consensus Back     alignment and domain information
>KOG2302|consensus Back     alignment and domain information
>PLN03223 Polycystin cation channel protein; Provisional Back     alignment and domain information
>PRK10537 voltage-gated potassium channel; Provisional Back     alignment and domain information
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] Back     alignment and domain information
>KOG0499|consensus Back     alignment and domain information
>KOG3599|consensus Back     alignment and domain information
>KOG4404|consensus Back     alignment and domain information
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys Back     alignment and domain information
>KOG3684|consensus Back     alignment and domain information
>KOG1418|consensus Back     alignment and domain information
>KOG3193|consensus Back     alignment and domain information
>TIGR00870 trp transient-receptor-potential calcium channel protein Back     alignment and domain information
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG4404|consensus Back     alignment and domain information
>KOG3609|consensus Back     alignment and domain information
>KOG1418|consensus Back     alignment and domain information
>KOG3676|consensus Back     alignment and domain information
>KOG3614|consensus Back     alignment and domain information
>KOG3827|consensus Back     alignment and domain information
>KOG0510|consensus Back     alignment and domain information
>KOG3533|consensus Back     alignment and domain information
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory Back     alignment and domain information
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query306
2r9r_B514 Shaker Family Voltage Dependent Potassium Channel ( 2e-51
3lnm_B514 F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Chan 1e-50
3lut_B499 A Structural Model For The Full-Length Shaker Potas 2e-47
2a79_B499 Mammalian Shaker Kv1.2 Potassium Channel- Beta Subu 2e-47
3beh_A355 Structure Of A Bacterial Cyclic Nucleotide Regulate 2e-10
3stl_C103 Kcsa Potassium Channel Mutant Y82c With Cadmium Bou 7e-09
3stz_C102 Kcsa Potassium Channel Mutant Y82c With Nitroxide S 7e-09
3pjs_K166 Mechanism Of Activation Gating In The Full-Length K 2e-08
2a0l_A241 Crystal Structure Of Kvap-33h1 Fv Complex Length = 2e-08
1orq_C223 X-Ray Structure Of A Voltage-Dependent Potassium Ch 3e-08
3eff_K139 The Crystal Structure Of Full-Length Kcsa In Its Cl 5e-08
3or7_C103 On The Structural Basis Of Modal Gating Behavior In 6e-08
3ogc_C131 Kcsa E71a Variant In Presence Of Na+ Length = 131 7e-08
4h33_A137 Crystal Structure Of A Voltage-gated K+ Channel Por 1e-07
1zwi_C103 Structure Of Mutant Kcsa Potassium Channel Length = 3e-07
2a9h_A155 Nmr Structural Studies Of A Potassium Channel Chary 3e-07
2atk_C124 Structure Of A Mutant Kcsa K+ Channel Length = 124 3e-07
3or6_C103 On The Structural Basis Of Modal Gating Behavior In 4e-07
2p7t_C103 Crystal Structure Of Kcsa Mutant Length = 103 4e-07
3ifx_A129 Crystal Structure Of The Spin-Labeled Kcsa Mutant V 4e-07
2hjf_C103 Potassium Channel Kcsa-Fab Complex With Tetrabutyla 5e-07
3hpl_C124 Kcsa E71h-F103a Mutant In The Closed State Length = 6e-07
2ih1_C122 Ion Selectivity In A Semi-Synthetic K+ Channel Lock 6e-07
1k4d_C124 Potassium Channel Kcsa-Fab Complex In Low Concentra 6e-07
1jvm_A125 Kcsa Potassium Channel With Tba (Tetrabutylammonium 7e-07
2jk5_C124 Potassium Channel Kcsa In Complex With Tetrabutylam 7e-07
1j95_A125 Kcsa Potassium Channel With Tba (Tetrabutylammonium 7e-07
3f5w_C104 Kcsa Potassium Channel In The Open-Inactivated Stat 1e-06
1s5h_C124 Potassium Channel Kcsa-Fab Complex T75c Mutant In K 1e-06
1bl8_A97 Potassium Channel (Kcsa) From Streptomyces Lividans 2e-06
1f6g_A160 Potassium Channel (Kcsa) Full-Length Fold Length = 2e-06
2nlj_C124 Potassium Channel Kcsa(M96v)-Fab Complex In Kcl Len 1e-05
2k1e_A103 Nmr Studies Of A Channel Protein Without Membranes: 1e-04
>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel (Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With Beta Subunit Length = 514 Back     alignment and structure 
Iteration: 1

 Score =  199 bits (505), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 98/202 (48%), Positives = 131/202 (64%), Gaps = 9/202 (4%)
Query: 35  IVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQE 94
           IVE +CI WFS E+L+R  A P K  FF   +N+ID++AI+PYY+++FL ESN +  + +
Sbjct: 243 IVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQ 302
Query: 95  VQTRTXXXXXXXXXXXXXXIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMG 154
              R               IMRILRI KL+RHS GLQ LG TL+ S +ELGLL+ FL +G
Sbjct: 303 NVRRVVQIFR---------IMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIG 353
Query: 155 VLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCG 214
           V++FSS  YFAE DE D++F SIP+ FWWA ++MTTVGYGD+ PTT  GK++GS+C + G
Sbjct: 354 VILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAG 413
Query: 215 XXXXXXXXXXXXNNFAEFYKNQ 236
                       +NF  FY  +
Sbjct: 414 VLTIALPVPVIVSNFNYFYHRE 435
>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel Length = 514 Back     alignment and structure
>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium Channel Kv1.2 Length = 499 Back     alignment and structure
>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit Complex Length = 499 Back     alignment and structure
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion Channel Length = 355 Back     alignment and structure
>pdb|3STL|C Chain C, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound Length = 103 Back     alignment and structure
>pdb|3STZ|C Chain C, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin Label Length = 102 Back     alignment and structure
>pdb|3PJS|K Chain K, Mechanism Of Activation Gating In The Full-Length Kcsa K+ Channel Length = 166 Back     alignment and structure
>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex Length = 241 Back     alignment and structure
>pdb|1ORQ|C Chain C, X-Ray Structure Of A Voltage-Dependent Potassium Channel In Complex With An Fab Length = 223 Back     alignment and structure
>pdb|3EFF|K Chain K, The Crystal Structure Of Full-Length Kcsa In Its Closed Conformation Length = 139 Back     alignment and structure
>pdb|3OR7|C Chain C, On The Structural Basis Of Modal Gating Behavior In K+channels - E71i Length = 103 Back     alignment and structure
>pdb|3OGC|C Chain C, Kcsa E71a Variant In Presence Of Na+ Length = 131 Back     alignment and structure
>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore Module In A Closed State In Lipid Membranes, Tetragonal Crystal Form Length = 137 Back     alignment and structure
>pdb|1ZWI|C Chain C, Structure Of Mutant Kcsa Potassium Channel Length = 103 Back     alignment and structure
>pdb|2A9H|A Chain A, Nmr Structural Studies Of A Potassium Channel Charybdotoxin Complex Length = 155 Back     alignment and structure
>pdb|2ATK|C Chain C, Structure Of A Mutant Kcsa K+ Channel Length = 124 Back     alignment and structure
>pdb|3OR6|C Chain C, On The Structural Basis Of Modal Gating Behavior In K+channels - E71q Length = 103 Back     alignment and structure
>pdb|2P7T|C Chain C, Crystal Structure Of Kcsa Mutant Length = 103 Back     alignment and structure
>pdb|3IFX|A Chain A, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1 Length = 129 Back     alignment and structure
>pdb|2HJF|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetrabutylammonium (Tba) Length = 103 Back     alignment and structure
>pdb|3HPL|C Chain C, Kcsa E71h-F103a Mutant In The Closed State Length = 124 Back     alignment and structure
>pdb|2IH1|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In The Conductive Conformation Length = 122 Back     alignment and structure
>pdb|1K4D|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of K+ Length = 124 Back     alignment and structure
>pdb|1JVM|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And Rubidium Length = 125 Back     alignment and structure
>pdb|2JK5|C Chain C, Potassium Channel Kcsa In Complex With Tetrabutylammonium In High K Length = 124 Back     alignment and structure
>pdb|1J95|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And Potassium Length = 125 Back     alignment and structure
>pdb|3F5W|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With 32 A Opening At T112 Length = 104 Back     alignment and structure
>pdb|1S5H|C Chain C, Potassium Channel Kcsa-Fab Complex T75c Mutant In K+ Length = 124 Back     alignment and structure
>pdb|1BL8|A Chain A, Potassium Channel (Kcsa) From Streptomyces Lividans Length = 97 Back     alignment and structure
>pdb|1F6G|A Chain A, Potassium Channel (Kcsa) Full-Length Fold Length = 160 Back     alignment and structure
>pdb|2NLJ|C Chain C, Potassium Channel Kcsa(M96v)-Fab Complex In Kcl Length = 124 Back     alignment and structure
>pdb|2K1E|A Chain A, Nmr Studies Of A Channel Protein Without Membranes: Structure And Dynamics Of Water-Solubilized Kcsa Length = 103 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query306
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 1e-109
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 2e-97
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 5e-82
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 1e-57
2a9h_A155 Voltage-gated potassium channel; potassium channel 2e-56
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 5e-53
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 5e-48
2k1e_A103 Water soluble analogue of potassium channel, KCSA; 1e-40
2qks_A 321 KIR3.1-prokaryotic KIR channel chimera; G-protein 3e-29
1p7b_A 333 Integral membrane channel and cytosolic domains; t 7e-25
1xl4_A301 Inward rectifier potassium channel; integral membr 9e-24
1ors_C132 Potassium channel; voltage-dependent, voltage sens 2e-18
2kyh_A147 KVAP, voltage-gated potassium channel; ION channel 5e-18
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 1e-16
1lnq_A 336 MTHK channels, potassium channel related protein; 1e-15
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 1e-15
2q67_A114 Potassium channel protein; inverted teepee, helix 5e-13
3ouf_A97 Potassium channel protein; ION channel, membrane, 9e-13
4dxw_A229 Navrh, ION transport protein; tetrameric, voltage- 2e-12
3rvy_A285 ION transport protein; tetrameric ION channel, vol 1e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
3sya_A 340 G protein-activated inward rectifier potassium CH; 4e-06
3spc_A 343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 6e-04
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Length = 514 Back     alignment and structure
 Score =  324 bits (832), Expect = e-109
 Identities = 131/306 (42%), Positives = 185/306 (60%), Gaps = 31/306 (10%)

Query: 1   MFIVLSTVALTLNTIPSLQHKDKAGNPID-------------------NPKLAIVEAVCI 41
           M I++S V+  L T+P  + +++  +                           IVE +CI
Sbjct: 190 MVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETLCI 249

Query: 42  TWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQ 101
            WFS E+L+R  A P K  FF   +N+ID++AI+PYY+++FL ESN +           Q
Sbjct: 250 IWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSV---------LQ 300

Query: 102 FQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSL 161
           FQ+VRRVVQ+FRIMRILRI KL+RHS GLQ LG TL+ S +ELGLL+ FL +GV++FSS 
Sbjct: 301 FQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSA 360

Query: 162 AYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALP 221
            YFAE DE D++F SIP+ FWWA ++MTTVGYGD+ PTT  GK++GS+C + GVL IALP
Sbjct: 361 VYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALP 420

Query: 222 IPIIVNNFAEFYKNQMRREKALKRREAMERAKREGSIVSFHHVNLRDAFAKS--MDLIDV 279
           +P+IV+NF  FY  +   E+  +  +     K   S             +KS  M++ + 
Sbjct: 421 VPVIVSNFNYFYHRETEGEEQAQYLQVTSSPKIPSS-PDLKKSRSASTISKSDYMEIQEG 479

Query: 280 IVDTGE 285
           + ++ E
Sbjct: 480 VNNSNE 485
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355 Back     alignment and structure
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Length = 223 Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Length = 166 Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Length = 155 Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Length = 122 Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Length = 139 Back     alignment and structure
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Length = 103 Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Length = 321 Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Length = 333 Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Length = 301 Back     alignment and structure
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1 Length = 132 Back     alignment and structure
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix} Length = 147 Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Length = 148 Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Length = 336 Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 3r65_A 3ous_A 3ldd_A Length = 82 Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Length = 114 Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Length = 97 Back     alignment and structure
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Length = 229 Back     alignment and structure
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 3rw0_A* Length = 285 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Length = 340 Back     alignment and structure
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Length = 343 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query306
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 100.0
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 100.0
3rvy_A285 ION transport protein; tetrameric ION channel, vol 99.97
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 99.97
4dxw_A229 Navrh, ION transport protein; tetrameric, voltage- 99.95
2a9h_A155 Voltage-gated potassium channel; potassium channel 99.86
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 99.83
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 99.76
1ors_C132 Potassium channel; voltage-dependent, voltage sens 99.74
2k1e_A103 Water soluble analogue of potassium channel, KCSA; 99.71
4h33_A137 LMO2059 protein; bilayers, KVLM, lipidic cubic pha 99.66
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 99.65
2q67_A114 Potassium channel protein; inverted teepee, helix 99.6
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 99.58
3ouf_A97 Potassium channel protein; ION channel, membrane, 99.54
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 99.51
2kyh_A147 KVAP, voltage-gated potassium channel; ION channel 99.48
1p7b_A 333 Integral membrane channel and cytosolic domains; t 99.39
1xl4_A301 Inward rectifier potassium channel; integral membr 99.38
2qks_A 321 KIR3.1-prokaryotic KIR channel chimera; G-protein 99.35
3um7_A309 Potassium channel subfamily K member 4; potassium 99.23
3ukm_A280 Potassium channel subfamily K member 1; membrane p 99.22
3um7_A309 Potassium channel subfamily K member 4; potassium 99.14
1lnq_A 336 MTHK channels, potassium channel related protein; 99.07
4gx0_A 565 TRKA domain protein; membrane protein, ION channel 99.07
3sya_A 340 G protein-activated inward rectifier potassium CH; 99.05
3ukm_A280 Potassium channel subfamily K member 1; membrane p 99.02
3spc_A 343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 98.97
4f4l_A112 ION transport protein; alpha helical membrane prot 98.84
3rvy_A285 ION transport protein; tetrameric ION channel, vol 95.06
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 94.76
4dxw_A229 Navrh, ION transport protein; tetrameric, voltage- 93.1
3kg2_A 823 Glutamate receptor 2; ION channel, membrane protei 92.71
2lcm_A28 Voltage-dependent N-type calcium channel subunit; 88.27
2a9h_A155 Voltage-gated potassium channel; potassium channel 83.01
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 82.2
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
Probab=100.00  E-value=8.7e-36  Score=280.88  Aligned_cols=226  Identities=54%  Similarity=0.982  Sum_probs=193.6

Q ss_pred             ChhhHHHHHHHhcccccccccc--------------------CCCCCCCchhHHHHHHHHHHHHHHHHHHHhcccchhhh
Q psy694            2 FIVLSTVALTLNTIPSLQHKDK--------------------AGNPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWKF   61 (306)
Q Consensus         2 ~i~~~~i~~~l~t~~~~~~~~~--------------------~~~~~~~~~~~i~~~i~~~~F~~e~~l~~~~~~~~~~y   61 (306)
                      +|++|+++++++|++.++...+                    ++ ......+.++|.++.++|++|+++|+++++.|++|
T Consensus       191 ~Illsii~~~leT~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ie~i~~~iFtiE~ilR~~~~~~k~~Y  269 (514)
T 2r9r_B          191 VILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQSTIGYQQS-TSFTDPFFIVETLCIIWFSFEFLVRFFACPSKAGF  269 (514)
T ss_dssp             HHHHHHHHHHHTTCHHHHTCSTTTTSCCCCHHHHHHHHHSSCCC-TTCCCHHHHHHHHHHHHHHHHHHHHHHHSSCSSSS
T ss_pred             HHHHHHHHhhhhcccccccccccccccccccccccccccccccc-chhhhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            6899999999999887543310                    01 11256899999999999999999999999999999


Q ss_pred             hccccchhHhHhhhhHHHHHHHhhcCCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q psy694           62 FKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSY  141 (306)
Q Consensus        62 ~~~~~~~~D~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lrllRllR~~rl~~~~~~~~~l~~~~~~~~  141 (306)
                      +|++||++|+++++|+++.+........++         .+......++++|++|++|++|+.++.++++.+..++..+.
T Consensus       270 ~ks~wniiDli~iip~~i~l~~~~~~~~~~---------~~~~~~~~lrvlRllRvlRilkL~r~~~~l~~l~~tl~~s~  340 (514)
T 2r9r_B          270 FTNIMNIIDIVAIIPYYVTIFLTESNKSVL---------QFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASM  340 (514)
T ss_dssp             TTSHHHHHHHHTTHHHHHHHHHHHTSCSHH---------HHHTTHHHHHHHHHHGGGGGGGGGGSCHHHHHHHHHHHHTH
T ss_pred             HhchhHHHHHHHHHHHHHHHHhhhccccch---------hhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            999999999999999998877643322110         11122367899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccCccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHH
Q psy694          142 KELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALP  221 (306)
Q Consensus       142 ~~l~~~~l~~~~~~~~~a~~~~~~~~~~~~~~f~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~  221 (306)
                      +.+..+++++++++.+||+++|..++..++.+|.++++|+||+++|+||+||||++|.++.|++++++++++|+++++++
T Consensus       341 ~~l~~ll~~l~i~~~if~~~~~~~e~~~~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~  420 (514)
T 2r9r_B          341 RELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALP  420 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHhhhheeeccCCCccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHH
Confidence            99998888888899999999999988878889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy694          222 IPIIVNNFAEFYKNQM  237 (306)
Q Consensus       222 i~~i~~~~~~~~~~~~  237 (306)
                      +|++.+++++.+++++
T Consensus       421 iavI~~~f~~~~~~~~  436 (514)
T 2r9r_B          421 VPVIVSNFNYFYHRET  436 (514)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999998776433
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Back     alignment and structure
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Back     alignment and structure
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Back     alignment and structure
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1 Back     alignment and structure
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Back     alignment and structure
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A Back     alignment and structure
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix} Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Back     alignment and structure
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* Back     alignment and structure
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Back     alignment and structure
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus} Back     alignment and structure
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Back     alignment and structure
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} Back     alignment and structure
>2lcm_A Voltage-dependent N-type calcium channel subunit; voltage sensor peptide, membrane protein; NMR {Homo sapiens} Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 306
d1r3jc_103 f.14.1.1 (C:) Potassium channel protein {Streptomy 3e-24
d1xl4a2116 f.14.1.1 (A:23-138) Inward rectifier potassium cha 2e-20
d2h8pc157 f.14.1.1 (C:22-78) Potassium channel protein {Stre 3e-19
d1p7ba2116 f.14.1.1 (A:36-151) Inward rectifier potassium cha 4e-16
d1lnqa280 f.14.1.1 (A:19-98) Potassium channel-related prote 9e-16
d1orsc_132 f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aer 1e-11
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 103 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

 Score = 92.3 bits (229), Expect = 3e-24
 Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 2/100 (2%)

Query: 140 SYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPT 199
            ++  G   + L + +L  S LA  AE+     + ++ P   WW+  T TTVGYGD+ P 
Sbjct: 4   HWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPV 63

Query: 200 TPLGKMIGSVCCVCGVLVIALPIPIIVNNFAEFYKNQMRR 239
           T  G+ +  V  V G+    L    +   F    + Q RR
Sbjct: 64  TLWGRCVAVVVMVAGITSFGLVTAALATWFVG--REQERR 101
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116 Back     information, alignment and structure
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 57 Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 116 Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80 Back     information, alignment and structure
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 132 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query306
d1r3jc_103 Potassium channel protein {Streptomyces coelicolor 99.79
d1orsc_132 Potassium channel KVAP {Archaeon Aeropyrum pernix 99.69
d1p7ba2116 Inward rectifier potassium channel Kirbac1.1 {Burk 99.55
d1xl4a2116 Inward rectifier potassium channel kirbac3.1 {Magn 99.54
d1lnqa280 Potassium channel-related protein MthK {Archaeon M 99.31
d2h8pc157 Potassium channel protein {Streptomyces coelicolor 99.22
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.79  E-value=3.5e-19  Score=129.99  Aligned_cols=90  Identities=30%  Similarity=0.528  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccCCCCccCccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHH
Q psy694          143 ELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPI  222 (306)
Q Consensus       143 ~l~~~~l~~~~~~~~~a~~~~~~~~~~~~~~f~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i  222 (306)
                      .+.....++++.+++.+.+.+..|++.+++++.++++|+||+++|+||+||||++|.++.||++++++++.|++++++++
T Consensus         7 ~~~~~~~~~~~~~~~~s~~~~~~e~~~~~~~~~s~~~aly~~~vT~tTvGYGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~   86 (103)
T d1r3jc_           7 AAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVT   86 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCcccCchhhhhhhheeeecccccCccccCChhHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555666677788888888888889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy694          223 PIIVNNFAEF  232 (306)
Q Consensus       223 ~~i~~~~~~~  232 (306)
                      +.+.+.+.+.
T Consensus        87 ~~i~~~~~~~   96 (103)
T d1r3jc_          87 AALATWFVGR   96 (103)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998888753
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Back     information, alignment and structure
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure