Psyllid ID: psy6951

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--
Protein Sequence
MCKDDFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQ
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHHHHccccccccccHHcccHHHHHccccccHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHHHccHHcHHHHHHHHHHHHHHHcccccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mckddfasldqrniysnnELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQ
Flexible Loop (DISEMBL)
mckddfasldqrniysnNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQ
Low Complexity Region (SEG)
MCKDDFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQ
Disordered region (IsUnstruct)
************NIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFV**
Disordered Region (DISOPRED)
MCKDDFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFV**
Disordered Region (DISEMBL)
MCKDDFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQ
Disordered Region (DISPRO)
*CKDDFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MCKDDFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	72	2.2.26 [Sep-21-2011]
Q8IY33	904	MICAL-like protein 2 OS=H	yes	N/A	0.805	0.064	0.630	6e-17
Q8BGT6	870	MICAL-like protein 1 OS=M	no	N/A	0.833	0.068	0.522	4e-13
Q8N3F8	863	MICAL-like protein 1 OS=H	no	N/A	0.805	0.067	0.538	1e-12
G3MWR8	1960	Protein-methionine sulfox	no	N/A	0.805	0.029	0.446	1e-09
Q7RTP6	2002	Protein-methionine sulfox	no	N/A	0.805	0.028	0.430	3e-09
Q8CJ19	1993	Protein-methionine sulfox	no	N/A	0.805	0.029	0.430	4e-09
F1QH17	1994	Protein-methionine sulfox	no	N/A	0.805	0.029	0.430	5e-09
F6QZ15	1126	Protein-methionine sulfox	no	N/A	0.805	0.051	0.4	2e-07
O94851	1124	Protein-methionine sulfox	no	N/A	0.805	0.051	0.4	2e-07
F1MF74	1101	Protein-methionine sulfox	no	N/A	0.805	0.052	0.384	2e-06

>sp|Q8IY33|MILK2_HUMAN MICAL-like protein 2 OS=Homo sapiens GN=MICALL2 PE=1 SV=1

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 41/65 (63%), Positives = 48/65 (73%), Gaps = 7/65 (10%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           +F++L + NIY NN+LAFR AE HLGIPAL       LDAEDMV   VPDRLSILTY+SQ
Sbjct: 49  NFSALKKENIYENNKLAFRVAEEHLGIPAL-------LDAEDMVALKVPDRLSILTYVSQ 101

Query: 65  FYQVF 69
           +Y  F
Sbjct: 102 YYNYF 106

May be a cytoskeletal regulator.
Homo sapiens (taxid: 9606)

>sp|Q8BGT6|MILK1_MOUSE MICAL-like protein 1 OS=Mus musculus GN=Micall1 PE=1 SV=3

 Score = 73.2 bits (178), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/67 (52%), Positives = 44/67 (65%), Gaps = 7/67 (10%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           DF SL + N++ NN LAF  AE+ LGIPAL       LD  DMV  +VPD LSI+TY+SQ
Sbjct: 50  DFQSLSKENVFENNRLAFEVAEKELGIPAL-------LDPNDMVSMSVPDCLSIMTYVSQ 102

Query: 65  FYQVFVN 71
           +Y  F +
Sbjct: 103 YYNHFTS 109

May be a cytoskeletal regulator.

Mus musculus (taxid: 10090)

>sp|Q8N3F8|MILK1_HUMAN MICAL-like protein 1 OS=Homo sapiens GN=MICALL1 PE=1 SV=2

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/65 (53%), Positives = 43/65 (66%), Gaps = 7/65 (10%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           DF SL + N++ NN LAF  AE+ LGIPAL       LD  DMV  +VPD LSI+TY+SQ
Sbjct: 50  DFDSLSKDNVFENNRLAFEVAEKELGIPAL-------LDPNDMVSMSVPDCLSIMTYVSQ 102

Query: 65  FYQVF 69
           +Y  F
Sbjct: 103 YYNHF 107

May be a cytoskeletal regulator.

Homo sapiens (taxid: 9606)

>sp|G3MWR8|MICA3_BOVIN Protein-methionine sulfoxide oxidase MICAL3 OS=Bos taurus GN=MICAL3 PE=3 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 7/65 (10%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           DF SLD++N+  NN+LAF  AE+ LGI  ++  RE       M     PD+LS++ YL+Q
Sbjct: 566 DFDSLDEQNVEKNNQLAFDIAEKELGISPIMTGRE-------MASVGEPDKLSMVMYLTQ 618

Query: 65  FYQVF 69
           FY++F
Sbjct: 619 FYEMF 623

Monooxygenase that promotes depolymerization of F-actin by mediating oxidation of specific methionine residues on actin. Acts by modifying actin subunits through the addition of oxygen to form methionine-sulfoxide, leading to promote actin filament severing and prevent repolymerization. Involved in exocytic vesicles tethering and fusion: the monooxygenase activity is required for this process.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q7RTP6|MICA3_HUMAN Protein-methionine sulfoxide oxidase MICAL3 OS=Homo sapiens GN=MICAL3 PE=1 SV=2

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 7/65 (10%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           DF SLD++N+  NN+LAF  AE+ LGI  ++  +E       M     PD+LS++ YL+Q
Sbjct: 566 DFDSLDEQNVEKNNQLAFDIAEKELGISPIMTGKE-------MASVGEPDKLSMVMYLTQ 618

Query: 65  FYQVF 69
           FY++F
Sbjct: 619 FYEMF 623

Monooxygenase that promotes depolymerization of F-actin by mediating oxidation of specific methionine residues on actin. Acts by modifying actin subunits through the addition of oxygen to form methionine-sulfoxide, leading to promote actin filament severing and prevent repolymerization (By similarity). Involved in exocytic vesicles tethering and fusion: the monooxygenase activity is required for this process.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q8CJ19|MICA3_MOUSE Protein-methionine sulfoxide oxidase MICAL3 OS=Mus musculus GN=Mical3 PE=1 SV=2

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 7/65 (10%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           DF SLD++N+  NN+LAF  AE+ LGI  ++  +E       M     PD+LS++ YL+Q
Sbjct: 566 DFDSLDEQNVEKNNQLAFDIAEKELGISPIMTGKE-------MASVGEPDKLSMVMYLTQ 618

Query: 65  FYQVF 69
           FY++F
Sbjct: 619 FYEMF 623

Monooxygenase that promotes depolymerization of F-actin by mediating oxidation of specific methionine residues on actin. Acts by modifying actin subunits through the addition of oxygen to form methionine-sulfoxide, leading to promote actin filament severing and prevent repolymerization. Involved in exocytic vesicles tethering and fusion: the monooxygenase activity is required for this process.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|F1QH17|MCA3A_DANRE Protein-methionine sulfoxide oxidase mical3a OS=Danio rerio GN=mical3a PE=2 SV=2

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 7/65 (10%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           DF SLD++++  NN+LAF  AER  GI  ++  +E  +  E       PD+LS++ YLSQ
Sbjct: 569 DFESLDEKDVEKNNQLAFDVAEREFGISPIMTGKEMSVVVE-------PDKLSMVMYLSQ 621

Query: 65  FYQVF 69
           FY++F
Sbjct: 622 FYEMF 626

Monooxygenase that promotes depolymerization of F-actin by mediating oxidation of specific methionine residues on actin. Acts by modifying actin subunits through the addition of oxygen to form methionine-sulfoxide, leading to promote actin filament severing and prevent repolymerization. Involved in exocytic vesicles tethering and fusion: the monooxygenase activity is required for this process.

Danio rerio (taxid: 7955)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|F6QZ15|MICA2_XENTR Protein-methionine sulfoxide oxidase mical2 OS=Xenopus tropicalis GN=mical2 PE=3 SV=1

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 7/65 (10%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           DF SL + ++  NN+LAF  AER  GI  +   +E     E       PD+LS++ YLS+
Sbjct: 564 DFGSLKEDDVVGNNQLAFDIAEREFGISPMTTGKEMAATEE-------PDKLSMVLYLSK 616

Query: 65  FYQVF 69
           FY++F
Sbjct: 617 FYELF 621

Monooxygenase that promotes depolymerization of F-actin by mediating oxidation of specific methionine residues on actin. Acts by modifying actin subunits through the addition of oxygen to form methionine-sulfoxide, leading to promote actin filament severing and prevent repolymerization.

Xenopus tropicalis (taxid: 8364)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|O94851|MICA2_HUMAN Protein-methionine sulfoxide oxidase MICAL2 OS=Homo sapiens GN=MICAL2 PE=1 SV=1

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 7/65 (10%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           +F SL++ +   NN+LAF  AER  GIP +   +E       M     PD+LS++ YLS+
Sbjct: 564 NFDSLNEDDAVENNQLAFDVAEREFGIPPVTTGKE-------MASAQEPDKLSMVMYLSK 616

Query: 65  FYQVF 69
           FY++F
Sbjct: 617 FYELF 621

Monooxygenase that promotes depolymerization of F-actin by mediating oxidation of specific methionine residues on actin. Acts by modifying actin subunits through the addition of oxygen to form methionine-sulfoxide, leading to promote actin filament severing and prevent repolymerization.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|F1MF74|MICA2_BOVIN Protein-methionine sulfoxide oxidase MICAL2 OS=Bos taurus GN=MICAL2 PE=3 SV=2

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 7/65 (10%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           +F SL++ +   NN+LAF  AER  GI  ++  +E       M     PD+LS++ YLS+
Sbjct: 564 NFDSLNEDHAVENNQLAFDVAEREFGIAPVITGKE-------MASAQEPDKLSMVMYLSK 616

Query: 65  FYQVF 69
           FY++F
Sbjct: 617 FYELF 621

Monooxygenase that promotes depolymerization of F-actin by mediating oxidation of specific methionine residues on actin. Acts by modifying actin subunits through the addition of oxygen to form methionine-sulfoxide, leading to promote actin filament severing and prevent repolymerization.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
242003022	122	conserved hypothetical protein [Pediculu	0.833	0.491	0.761	2e-19
345482132	850	PREDICTED: hypothetical protein LOC10011	0.805	0.068	0.723	4e-18
350420891	1096	PREDICTED: hypothetical protein LOC10074	0.805	0.052	0.723	2e-16
340718062	1099	PREDICTED: hypothetical protein LOC10064	0.805	0.052	0.723	2e-16
383858085	1084	PREDICTED: uncharacterized protein LOC10	0.805	0.053	0.692	2e-16
328700158	165	PREDICTED: MICAL-like protein 2-like [Ac	0.847	0.369	0.661	2e-16
170032694	149	conserved hypothetical protein [Culex qu	0.847	0.409	0.661	4e-16
189240639	987	PREDICTED: similar to MICAL-like CG11259	0.819	0.059	0.681	4e-16
270013585	926	hypothetical protein TcasGA2_TC012205 [T	0.819	0.063	0.681	5e-16
322786143	96	hypothetical protein SINV_14193 [Solenop	0.805	0.604	0.692	5e-16

>gi|242003022|ref|XP_002422582.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212505372|gb|EEB09844.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/67 (76%), Positives = 54/67 (80%), Gaps = 7/67 (10%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           DF  LD+R+IY NNELAFRTAER LGIPAL       LDAEDMVEY VPDRLSILTYLSQ
Sbjct: 52  DFDRLDKRDIYKNNELAFRTAERQLGIPAL-------LDAEDMVEYEVPDRLSILTYLSQ 104

Query: 65  FYQVFVN 71
           FYQ FV+
Sbjct: 105 FYQAFVS 111

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345482132|ref|XP_001602531.2| PREDICTED: hypothetical protein LOC100118598 [Nasonia vitripennis]

 Score = 95.1 bits (235), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 47/65 (72%), Positives = 52/65 (80%), Gaps = 7/65 (10%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           DF SL++ +IY NNELAFRTAE+HLGIPAL       LDAEDM   +VPDRLSILTYLSQ
Sbjct: 52  DFGSLNKDDIYGNNELAFRTAEQHLGIPAL-------LDAEDMASCSVPDRLSILTYLSQ 104

Query: 65  FYQVF 69
           FYQVF
Sbjct: 105 FYQVF 109

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350420891|ref|XP_003492663.1| PREDICTED: hypothetical protein LOC100744222 [Bombus impatiens]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/65 (72%), Positives = 50/65 (76%), Gaps = 7/65 (10%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           DF SLD+ +IY NNELAFR AE+HLGIPAL       LDAEDM   AVPDRLSILTYLSQ
Sbjct: 52  DFDSLDKNDIYGNNELAFRIAEQHLGIPAL-------LDAEDMASCAVPDRLSILTYLSQ 104

Query: 65  FYQVF 69
           FYQ F
Sbjct: 105 FYQTF 109

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718062|ref|XP_003397491.1| PREDICTED: hypothetical protein LOC100649179 [Bombus terrestris]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/65 (72%), Positives = 50/65 (76%), Gaps = 7/65 (10%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           DF SLD+ +IY NNELAFR AE+HLGIPAL       LDAEDM   AVPDRLSILTYLSQ
Sbjct: 52  DFDSLDKNDIYGNNELAFRIAEQHLGIPAL-------LDAEDMASCAVPDRLSILTYLSQ 104

Query: 65  FYQVF 69
           FYQ F
Sbjct: 105 FYQTF 109

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858085|ref|XP_003704533.1| PREDICTED: uncharacterized protein LOC100881207 [Megachile rotundata]

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/65 (69%), Positives = 50/65 (76%), Gaps = 7/65 (10%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           DF SLD+ N+Y NNELAF+ AE+HLGIPAL       LDAEDM   +VPDRLSILTYLSQ
Sbjct: 52  DFNSLDKDNVYENNELAFKIAEQHLGIPAL-------LDAEDMASCSVPDRLSILTYLSQ 104

Query: 65  FYQVF 69
           FYQ F
Sbjct: 105 FYQTF 109

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328700158|ref|XP_001950793.2| PREDICTED: MICAL-like protein 2-like [Acyrthosiphon pisum]

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/68 (66%), Positives = 50/68 (73%), Gaps = 7/68 (10%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           D+ SLD+ +IY NNELAFR AE HLGIPAL       LD EDMV   +PDRLSILTYLSQ
Sbjct: 52  DYNSLDKNDIYGNNELAFRVAENHLGIPAL-------LDPEDMVCVEIPDRLSILTYLSQ 104

Query: 65  FYQVFVNQ 72
           FYQ F +Q
Sbjct: 105 FYQTFSSQ 112

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170032694|ref|XP_001844215.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167873045|gb|EDS36428.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 45/68 (66%), Positives = 50/68 (73%), Gaps = 7/68 (10%)

Query: 5  DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
          DFASL + NIY NNELAF  AE+HL IPAL       LD  DMV+Y VPDR SILTYLSQ
Sbjct: 24 DFASLKRENIYDNNELAFTIAEKHLNIPAL-------LDPVDMVKYEVPDRFSILTYLSQ 76

Query: 65 FYQVFVNQ 72
          +Y+VF NQ
Sbjct: 77 YYRVFSNQ 84

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189240639|ref|XP_001809361.1| PREDICTED: similar to MICAL-like CG11259-PA [Tribolium castaneum]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/66 (68%), Positives = 52/66 (78%), Gaps = 7/66 (10%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           +F+ L++ +IY NNELAFR AERHLGIPALL+        EDMVE +VPDRLSILTYLSQ
Sbjct: 52  EFSKLNKDDIYHNNELAFRIAERHLGIPALLEP-------EDMVECSVPDRLSILTYLSQ 104

Query: 65  FYQVFV 70
           FYQ FV
Sbjct: 105 FYQTFV 110

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270013585|gb|EFA10033.1| hypothetical protein TcasGA2_TC012205 [Tribolium castaneum]

 Score = 88.2 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 45/66 (68%), Positives = 52/66 (78%), Gaps = 7/66 (10%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           +F+ L++ +IY NNELAFR AERHLGIPALL+        EDMVE +VPDRLSILTYLSQ
Sbjct: 71  EFSKLNKDDIYHNNELAFRIAERHLGIPALLEP-------EDMVECSVPDRLSILTYLSQ 123

Query: 65  FYQVFV 70
           FYQ FV
Sbjct: 124 FYQTFV 129

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322786143|gb|EFZ12750.1| hypothetical protein SINV_14193 [Solenopsis invicta]

 Score = 88.2 bits (217), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 45/65 (69%), Positives = 50/65 (76%), Gaps = 7/65 (10%)

Query: 5  DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
          DF SL++ ++Y NNELAFRTAE+HLGIPAL       LDAEDM    VPDRLSILTYLSQ
Sbjct: 38 DFDSLNKDDVYRNNELAFRTAEQHLGIPAL-------LDAEDMASCTVPDRLSILTYLSQ 90

Query: 65 FYQVF 69
          FYQ F
Sbjct: 91 FYQTF 95

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
ZFIN|ZDB-GENE-110119-1	867	micall1 "MICAL-like 1" [Danio	0.847	0.070	0.588	4.7e-14
UNIPROTKB|Q8IY33	904	MICALL2 "MICAL-like protein 2"	0.805	0.064	0.630	5e-14
FB|FBgn0036333	1010	MICAL-like "MICAL-like" [Droso	0.791	0.056	0.656	1.6e-13
ZFIN|ZDB-GENE-030131-5409	799	micall2a "mical-like 2a" [Dani	0.805	0.072	0.630	1.8e-13
ZFIN|ZDB-GENE-030131-5803	783	micall2b "mical-like 2b" [Dani	0.805	0.074	0.615	4.8e-13
UNIPROTKB|F1RIV6	981	MICALL2 "Uncharacterized prote	0.805	0.059	0.615	8.4e-13
RGD|1307875	1003	Micall2 "MICAL-like 2" [Rattus	0.805	0.057	0.584	3.8e-12
UNIPROTKB|E1BYZ3	839	E1BYZ3 "Uncharacterized protei	0.805	0.069	0.569	4.9e-12
UNIPROTKB|F6REL8	883	MICALL2 "Uncharacterized prote	0.805	0.065	0.584	5.2e-12
UNIPROTKB|F1N8S6	397	Gga.5175 "Uncharacterized prot	0.833	0.151	0.567	5.9e-12

ZFIN|ZDB-GENE-110119-1 micall1 "MICAL-like 1" [Danio rerio (taxid:7955)]

 Score = 193 (73.0 bits), Expect = 4.7e-14, P = 4.7e-14
 Identities = 40/68 (58%), Positives = 48/68 (70%)

Query:     5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
             DF SL + N++ NN LAF  AER LGIPALLDA       EDMV  +VPDRLSI+TY+SQ
Sbjct:    49 DFDSLSKENVFENNRLAFEVAERELGIPALLDA-------EDMVSMSVPDRLSIITYVSQ 101

Query:    65 FYQVFVNQ 72
             +Y  F N+
Sbjct:   102 YYNFFTNK 109

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q8IY33 MICALL2 "MICAL-like protein 2" [Homo sapiens (taxid:9606)]

 Score = 193 (73.0 bits), Expect = 5.0e-14, P = 5.0e-14
 Identities = 41/65 (63%), Positives = 48/65 (73%)

Query:     5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
             +F++L + NIY NN+LAFR AE HLGIPALLDA       EDMV   VPDRLSILTY+SQ
Sbjct:    49 NFSALKKENIYENNKLAFRVAEEHLGIPALLDA-------EDMVALKVPDRLSILTYVSQ 101

Query:    65 FYQVF 69
             +Y  F
Sbjct:   102 YYNYF 106

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0032432 "actin filament bundle" evidence=IEA

FB|FBgn0036333 MICAL-like "MICAL-like" [Drosophila melanogaster (taxid:7227)]

 Score = 189 (71.6 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 42/64 (65%), Positives = 47/64 (73%)

Query:     5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
             DF  L   +IY NN+LAF TAE++LGIPALLDA        DMV Y VPDRLSILTYLSQ
Sbjct:    58 DFDRLKADDIYENNDLAFTTAEKYLGIPALLDAA-------DMVSYEVPDRLSILTYLSQ 110

Query:    65 FYQV 68
             FY+V
Sbjct:   111 FYKV 114

GO:0003779 "actin binding" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-030131-5409 micall2a "mical-like 2a" [Danio rerio (taxid:7955)]

 Score = 187 (70.9 bits), Expect = 1.8e-13, P = 1.8e-13
 Identities = 41/65 (63%), Positives = 46/65 (70%)

Query:     5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
             +F SL + N+Y NN LAFR AE HLGIPALLDA       EDMV   VPDRLSILTY+SQ
Sbjct:    49 NFESLSKDNVYYNNHLAFRVAEDHLGIPALLDA-------EDMVALPVPDRLSILTYVSQ 101

Query:    65 FYQVF 69
             +Y  F
Sbjct:   102 YYNYF 106

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

ZFIN|ZDB-GENE-030131-5803 micall2b "mical-like 2b" [Danio rerio (taxid:7955)]

 Score = 183 (69.5 bits), Expect = 4.8e-13, P = 4.8e-13
 Identities = 40/65 (61%), Positives = 45/65 (69%)

Query:     5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
             DF SL + NIY NN+ AF  AE+ LGIPALLDA       EDMV   VPDRLSILTY+SQ
Sbjct:    49 DFDSLSKENIYENNQRAFEVAEKELGIPALLDA-------EDMVALKVPDRLSILTYVSQ 101

Query:    65 FYQVF 69
             +Y  F
Sbjct:   102 YYNYF 106

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1RIV6 MICALL2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 182 (69.1 bits), Expect = 8.4e-13, P = 8.4e-13
 Identities = 40/65 (61%), Positives = 46/65 (70%)

Query:     5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
             +F +L + NIY NN+LAFR AE  LGIPALLDA       EDMV   VPDRLSILTY+SQ
Sbjct:    49 NFNALRKENIYENNQLAFRVAEEQLGIPALLDA-------EDMVALRVPDRLSILTYVSQ 101

Query:    65 FYQVF 69
             +Y  F
Sbjct:   102 YYNYF 106

GO:0032432 "actin filament bundle" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

RGD|1307875 Micall2 "MICAL-like 2" [Rattus norvegicus (taxid:10116)]

 Score = 176 (67.0 bits), Expect = 3.8e-12, P = 3.8e-12
 Identities = 38/65 (58%), Positives = 46/65 (70%)

Query:     5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
             +F +L + NIY NN+LAF+ AE  LGIPALLDA       EDMV   +PDRLSILTY+SQ
Sbjct:    49 NFNALRKENIYENNKLAFQVAEEQLGIPALLDA-------EDMVALKIPDRLSILTYVSQ 101

Query:    65 FYQVF 69
             +Y  F
Sbjct:   102 YYNYF 106

GO:0005923 "tight junction" evidence=ISO

GO:0006897 "endocytosis" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032432 "actin filament bundle" evidence=ISO

UNIPROTKB|E1BYZ3 E1BYZ3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 174 (66.3 bits), Expect = 4.9e-12, P = 4.9e-12
 Identities = 37/65 (56%), Positives = 45/65 (69%)

Query:     5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
             +F SL + N+Y NN+LAF+ A   LGIPALLDA       EDMV   VPDRLSI+TY+SQ
Sbjct:    49 NFNSLSKENVYENNKLAFQVASEQLGIPALLDA-------EDMVALRVPDRLSIITYVSQ 101

Query:    65 FYQVF 69
             +Y  F
Sbjct:   102 YYNYF 106

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0032432 "actin filament bundle" evidence=IEA

UNIPROTKB|F6REL8 MICALL2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 174 (66.3 bits), Expect = 5.2e-12, P = 5.2e-12
 Identities = 38/65 (58%), Positives = 45/65 (69%)

Query:     5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
             +F +L + N+Y NN+LAF  AE  LGIPALLDA       EDMV   VPDRLSILTY+SQ
Sbjct:    49 NFDALRKENVYENNKLAFSVAEEQLGIPALLDA-------EDMVALKVPDRLSILTYVSQ 101

Query:    65 FYQVF 69
             +Y  F
Sbjct:   102 YYNYF 106

GO:0032432 "actin filament bundle" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1N8S6 Gga.5175 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 168 (64.2 bits), Expect = 5.9e-12, P = 5.9e-12
 Identities = 38/67 (56%), Positives = 43/67 (64%)

Query:     5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
             DF SL + N+Y NN LAF  AER LGIPALLD         DMV   VPD LSI+TY+SQ
Sbjct:    50 DFDSLSKDNVYENNRLAFELAERELGIPALLDPN-------DMVSMKVPDCLSIMTYVSQ 102

Query:    65 FYQVFVN 71
             +Y  F N
Sbjct:   103 YYNHFNN 109

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8IY33	MILK2_HUMAN	No assigned EC number	0.6307	0.8055	0.0641	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	72
pfam00307	104	pfam00307, CH, Calponin homology (CH) domain	6e-08
COG5069	612	COG5069, SAC6, Ca2+-binding actin-bundling protein	5e-05
cd00014	107	cd00014, CH, Calponin homology domain; actin-bindi	1e-04

>gnl|CDD|215849 pfam00307, CH, Calponin homology (CH) domain

 Score = 45.0 bits (107), Expect = 6e-08
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 9/57 (15%)

Query: 13  NIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVF 69
           +   N  LA   AE+ LG+P        VL+ ED+VE    +   +LT L+Q ++ F
Sbjct: 56  DKLENLNLALEFAEKKLGVP-------KVLEPEDLVE--DGNEKLVLTLLAQLFRRF 103

The CH domain is found in both cytoskeletal proteins and signal transduction proteins. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity. Most member proteins have from two to four copies of the CH domain, however some proteins such as calponin have only a single copy. Length = 104

>gnl|CDD|227401 COG5069, SAC6, Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]

 Score = 38.8 bits (90), Expect = 5e-05
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 7/53 (13%)

Query: 17  NNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVF 69
           NN  AF  A + +GI  L+         ED+V  ++PD  SI+TY+S +   F
Sbjct: 187 NNFQAFENANKVIGIARLIGV-------EDIVNVSIPDERSIMTYVSWYIIRF 232

Length = 612

>gnl|CDD|237981 cd00014, CH, Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity)

 Score = 36.5 bits (85), Expect = 1e-04
 Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 9/67 (13%)

Query: 3   KDDFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYL 62
           K     L +     N  LA   AE  LG+P          DAED+VE    D   +L  L
Sbjct: 49  KKKINPLSRFKRLENINLALNFAE-KLGVP------VVNFDAEDLVED--GDEKLVLGLL 99

Query: 63  SQFYQVF 69
               + F
Sbjct: 100 WSLIRKF 106

The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav). Length = 107

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	72
KOG0517|consensus	2473		99.71
KOG0035|consensus	890		99.35
COG5069	612	SAC6 Ca2+-binding actin-bundling protein fimbrin/p	98.92
PF00307	108	CH: Calponin homology (CH) domain; InterPro: IPR00	98.62
cd00014	107	CH Calponin homology domain; actin-binding domain	98.2
smart00033	103	CH Calponin homology domain. Actin binding domains	96.97

>KOG0517|consensus

Probab=99.71  E-value=5.6e-18  Score=145.75  Aligned_cols=61  Identities=41%  Similarity=0.641  Sum_probs=59.2

Q ss_pred             CCCccCCCccCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHHhhhc
Q psy6951           3 KDDFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVN   71 (72)
Q Consensus         3 ~id~~sl~~~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~~   71 (72)
                      ++||++|.+.|+..|++.||++||++|||++|||       |||+ +...||++||||||+.||+||++
T Consensus       212 LvDf~~L~k~na~~NL~~AFdvAE~~LGia~LLD-------pEDV-~v~~PDEKSIITYV~~YYHyFsK  272 (2473)
T KOG0517|consen  212 LVDFDKLKKSNALYNLQHAFDVAEQELGIAKLLD-------PEDV-NVEQPDEKSIITYVVTYYHYFSK  272 (2473)
T ss_pred             hhhhcccCCCchhhHHHHHHHHHHHHcCchhcCC-------Hhhc-CccCCCcchHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999       9999 78999999999999999999986

>KOG0035|consensus

Probab=99.35  E-value=2.9e-13  Score=111.46  Aligned_cols=63  Identities=46%  Similarity=0.759  Sum_probs=60.3

Q ss_pred             CCC-ccCCCccCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHHhhhcC
Q psy6951           3 KDD-FASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQ   72 (72)
Q Consensus         3 ~id-~~sl~~~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~~~   72 (72)
                      +|| |+++++.++.+|++.||++||+++|||++||       +||++..+.||+++||||++++|+.|+++
T Consensus       187 li~~y~~lt~~~~~~n~~~A~~iAek~l~i~r~ld-------~ed~~~~~~pde~aimtyv~~~~~~fSg~  250 (890)
T KOG0035|consen  187 LIDQYDKLTKQDPVENLNLAFDIAEKFLGIPRLLD-------AEDIVEAAIPDEKAIMTYVSSYYHAFSGA  250 (890)
T ss_pred             hhhhhhhcCccchhHHhhhhhhhhhhcCCcccccC-------ccccccCCCCchhhhhhhhhhccccccCc
Confidence            577 9999999999999999999999999999999       99999999999999999999999999863

>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]

Probab=98.92  E-value=1.1e-09  Score=86.88  Aligned_cols=60  Identities=38%  Similarity=0.533  Sum_probs=55.6

Q ss_pred             CCccCCC--ccCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHHhhh
Q psy6951           4 DDFASLD--QRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFV   70 (72)
Q Consensus         4 id~~sl~--~~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~   70 (72)
                      +|+..|+  ..|+.-|+.+||++|++.+||+++++       .||+++...||++|+||||+..|..|.
T Consensus       172 ld~n~ld~qkknk~~n~~qafe~a~k~Igi~rli~-------vedivnV~~pDERsimtyv~~y~~rf~  233 (612)
T COG5069         172 LDPNVLDLQKKNKALNNFQAFENANKVIGIARLIG-------VEDIVNVSIPDERSIMTYVSWYIIRFG  233 (612)
T ss_pred             cCccccchhhcccchhHHHHHHHHHHhhchHhhcC-------cceeeecCCcchHHHHHHHHHHHHHHh
Confidence            5777787  78999999999999999999999999       999999999999999999999888774

>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []

Probab=98.62  E-value=7.4e-08  Score=58.77  Aligned_cols=58  Identities=40%  Similarity=0.626  Sum_probs=48.4

Q ss_pred             CCccCCCc-----cCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHHhhh
Q psy6951           4 DDFASLDQ-----RNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFV   70 (72)
Q Consensus         4 id~~sl~~-----~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~   70 (72)
                      +++..+.+     ....+|++.|++.+++++|+|..++       ++|++.  .+|+++|++|+.+++++|.
T Consensus        46 i~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~lg~~~~~~-------~~dl~~--~~~~~~vl~~l~~l~~~~e  108 (108)
T PF00307_consen   46 IDLKKINPNLKSPFDKLENIELALEAAEKKLGIPPLLS-------PEDLVE--KGDEKSVLSFLWQLFRYFE  108 (108)
T ss_dssp             SSGGGSSTSSSSHHHHHHHHHHHHHHHHHHTTSSCTS--------HHHHHS--TT-HHHHHHHHHHHHHHHT
T ss_pred             chhhhccccchhhhHHHHHHHHHHHHHHHHcCCCCCCC-------HHHHHH--CcCHHHHHHHHHHHHHHHC
Confidence            45666643     3689999999999998899999999       999974  8999999999999999884

It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....

>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity)

Probab=98.20  E-value=1.8e-06  Score=52.68  Aligned_cols=52  Identities=37%  Similarity=0.527  Sum_probs=45.7

Q ss_pred             CCccCHHhhHHHHHHHHHHhcCCchh-hhhhhccCCcccccccCCCCchhHHHHHHHHHHhhh
Q psy6951           9 LDQRNIYSNNELAFRTAERHLGIPAL-LDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFV   70 (72)
Q Consensus         9 l~~~~~~~N~~lAf~~Ae~~lGIp~l-Ld~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~   70 (72)
                      .......+|.+.+++.+++ +|||.. ++       ++|+++  .+|+++|++|+++++.+|.
T Consensus        55 ~~~~~~~~Ni~~~l~~~~~-~gi~~~~~~-------~~Dl~~--~~n~~~vl~~l~~l~~~~~  107 (107)
T cd00014          55 LSRFKRLENINLALNFAEK-LGVPVVNFD-------AEDLVE--DGDEKLVLGLLWSLIRKFL  107 (107)
T ss_pred             cchhhHHHHHHHHHHHHHH-cCCceeccC-------HHHHhh--CCCceeeHHHHHHHHHhhC
Confidence            4556678999999999985 999998 88       999974  7999999999999998873

The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).

>smart00033 CH Calponin homology domain

Probab=96.97  E-value=0.00053  Score=41.11  Aligned_cols=45  Identities=29%  Similarity=0.216  Sum_probs=37.0

Q ss_pred             cCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHH
Q psy6951          12 RNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ   64 (72)
Q Consensus        12 ~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~   64 (72)
                      ....+|++.+++.+++...++.+++       |+|+++.. ++.++++.|+.+
T Consensus        58 ~~~~~Ni~~~l~~~~~~g~~~~~~~-------~~Dl~~~~-k~~~~v~~~l~~  102 (103)
T smart00033       58 FKKIENINLALSFAEKLGGKLVLFE-------PEDLVEGN-KLILGVIWTLIL  102 (103)
T ss_pred             HHHHHhHHHHHHHHHHcCCeeeccC-------HHHHhhcc-hHHHHHHHHHHh
Confidence            4568999999999997733478999       99998744 899999999875

Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	72
2d88_A	121	Solution Structure Of The Ch Domain From Human Mica		9e-11
2e9k_A	121	Solution Structure Of The Ch Domain From Human Mica		5e-08
2eyi_A	234	Crystal Structure Of The Actin-Binding Domain Of Hu		3e-07
1wku_A	254	High Resolution Structure Of The Human Alpha-Actini		1e-06
1tjt_A	250	X-Ray Structure Of The Human Alpha-Actinin Isoform		1e-06
1sjj_A	863	Cryo-Em Structure Of Chicken Gizzard Smooth Muscle		2e-06
2d87_A	128	Solution Structure Of The Ch Domain From Human Smoo		3e-06
2r0o_A	237	Crystal Structure Of The Actin-Binding Domain Of Hu		3e-06
1bkr_A	109	Calponin Homology (Ch) Domain From Human Beta-Spect		4e-05
1aa2_A	108	Calponin Homology (Ch) Domain From Human Beta-Spect		4e-05
1wyq_A	127	Solution Structure Of The Second Ch Domain Of Human		8e-05
2jv9_A	119	The Solution Structure Of Calponin Homology Domain		2e-04

>pdb|2D88|A Chain A, Solution Structure Of The Ch Domain From Human Mical-3 Protein Length = 121

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 7/65 (10%)
Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           DF SLD++N+  NN+LAF  AE+ LGI  ++  +E       M     PD+LS++ YL+Q
Sbjct: 56  DFDSLDEQNVEKNNQLAFDIAEKELGISPIMTGKE-------MASVGEPDKLSMVMYLTQ 108
Query: 65  FYQVF 69
           FY++F
Sbjct: 109 FYEMF 113

>pdb|2E9K|A Chain A, Solution Structure Of The Ch Domain From Human Mical-2 Length = 121

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 7/65 (10%)
Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           +F SL++ +   NN+LAF  AER  GIP +   +E       M     PD+LS++ YLS+
Sbjct: 56  NFDSLNEDDAVENNQLAFDVAEREFGIPPVTTGKE-------MASAQEPDKLSMVMYLSK 108
Query: 65  FYQVF 69
           FY++F
Sbjct: 109 FYELF 113

>pdb|2EYI|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human Alpha-Actinin 1 At 1.7 Angstrom Resolution Length = 234

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           D+  L + +  +N   AF  AE++L IP +LDA       ED+V  A PD  +I+TY+S 
Sbjct: 167 DYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDA-------EDIVGTARPDEKAIMTYVSS 219
Query: 65  FYQVF 69
           FY  F
Sbjct: 220 FYHAF 224

>pdb|1WKU|A Chain A, High Resolution Structure Of The Human Alpha-Actinin Isoform 3 Length = 254

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           D+A L + +   N   AF  AE++L IP +LDA       ED+V    PD  +I+TY+S 
Sbjct: 187 DYAKLRKDDPIGNLNTAFEVAEKYLDIPKMLDA-------EDIVNTPKPDEKAIMTYVSC 239
Query: 65  FYQVF 69
           FY  F
Sbjct: 240 FYHAF 244

>pdb|1TJT|A Chain A, X-Ray Structure Of The Human Alpha-Actinin Isoform 3 At 2.2a Resolution Length = 250

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           D+A L + +   N   AF  AE++L IP +LDA       ED+V    PD  +I+TY+S 
Sbjct: 183 DYAKLRKDDPIGNLNTAFEVAEKYLDIPKMLDA-------EDIVNTPKPDEKAIMTYVSC 235
Query: 65  FYQVF 69
           FY  F
Sbjct: 236 FYHAF 240

>pdb|1SJJ|A Chain A, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha- Actinin Length = 863

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           D+  L + +  +N   AF  AE++L IP +LDA       ED+V  A PD  +I+TY+S 
Sbjct: 168 DYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDA-------EDIVGTARPDEKAIMTYVSS 220
Query: 65  FYQVF 69
           FY  F
Sbjct: 221 FYHAF 225

>pdb|2D87|A Chain A, Solution Structure Of The Ch Domain From Human Smoothelin Splice Isoform L2 Length = 128

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           D+  L  +N   N E+AF +AE H   P L       LD EDMV    PD   + TY+ +
Sbjct: 54  DYGQLSPQNRRQNFEVAFSSAETHADCPQL-------LDTEDMVRLREPDWKCVYTYIQE 106
Query: 65  FYQVFVNQ 72
           FY+  V +
Sbjct: 107 FYRCLVQK 114

>pdb|2R0O|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human Alpha-Actinin-4 Mutant(K255e) Length = 237

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           ++  L + +  +N   AF  AE++L IP +LDA       ED+V  A PD  +I+TY+S 
Sbjct: 172 EYDKLRKDDPVTNLNNAFEVAEKYLDIPKMLDA-------EDIVNTARPDEEAIMTYVSS 224
Query: 65  FYQVF 69
           FY  F
Sbjct: 225 FYHAF 229

>pdb|1BKR|A Chain A, Calponin Homology (Ch) Domain From Human Beta-Spectrin At 1.1 Angstrom Resolution Length = 109

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           DF  L + N + N + AF  AE+HLG+  LLD  +  +D         PD  SI+TY+  
Sbjct: 50  DFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLDPEDISVDH--------PDEKSIITYVVT 101
Query: 65  FYQVF 69
           +Y  F
Sbjct: 102 YYHYF 106

>pdb|1AA2|A Chain A, Calponin Homology (Ch) Domain From Human Beta-Spectrin Length = 108

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           DF  L + N + N + AF  AE+HLG+  LLD  +  +D         PD  SI+TY+  
Sbjct: 49  DFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLDPEDISVDH--------PDEKSIITYVVT 100
Query: 65  FYQVF 69
           +Y  F
Sbjct: 101 YYHYF 105

>pdb|1WYQ|A Chain A, Solution Structure Of The Second Ch Domain Of Human Spectrin Beta Chain, Brain 2 Length = 127

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           DF SL + N + N + AF  AE+ LG+  LLD  +  +D         PD  SI+TY++ 
Sbjct: 54  DFESLKKCNAHYNLQNAFNLAEKELGLTKLLDPEDVNVDQ--------PDEKSIITYVAT 105
Query: 65  FYQVF 69
           +Y  F
Sbjct: 106 YYHYF 110

>pdb|2JV9|A Chain A, The Solution Structure Of Calponin Homology Domain From Smoothelin-Like 1 Length = 119

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           D+A LD      N  LAF TAE+      L D  + +L+ +DMV  AVPD   + TY+ +
Sbjct: 51  DYAELDPAKRRHNFTLAFSTAEK------LADCAQ-LLEVDDMVRLAVPDSKCVYTYIQE 103
Query: 65  FYQVFVNQ 72
            Y+  V +
Sbjct: 104 LYRSLVQK 111

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	72
2d88_A	121	Protein mical-3; all alpha, calponin homology doma	3e-25
2d87_A	128	Smoothelin splice isoform L2; all alpha, calponin	2e-24
1wyl_A	116	NEDD9 interacting protein with calponin homology a	1e-22
2d89_A	119	EHBP1 protein; all alpha, calponin homology domain	6e-22
1bhd_A	118	Utrophin; calponin homology, actin binding, struct	6e-22
1wku_A	254	Alpha-actinin 3; calponin homology domain, actin b	7e-22
1wyq_A	127	Spectrin beta chain, brain 2; NPPSFA, structural g	2e-21
1bkr_A	109	Spectrin beta chain; filamentous actin-binding dom	2e-21
3f7p_A	296	Plectin-1; plakin, hemidesmosome, cell adhesion, e	2e-18
1sh5_A	245	Plectin 1, PLTN, PCN; actin-binding domain, calpon	8e-18
1dxx_A	246	Dystrophin; structural protein, muscular dystrophy	4e-16
3hoc_A	272	Filamin-A; calponin homology domain, actin binding	2e-13
2wa7_A	245	Filamin-B; disease mutation, skeletal dysplasia, s	1e-12
1aoa_A	275	T-fimbrin; actin-binding protein, calcium-binding,	3e-10
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	3e-10
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	1e-08
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	1e-05
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	1e-08
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	4e-06

>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A Length = 121

 Score = 88.9 bits (221), Expect = 3e-25
 Identities = 27/67 (40%), Positives = 43/67 (64%), Gaps = 7/67 (10%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           DF SLD++N+  NN+LAF  AE+ LGI  ++         ++M     PD+LS++ YL+Q
Sbjct: 56  DFDSLDEQNVEKNNQLAFDIAEKELGISPIMTG-------KEMASVGEPDKLSMVMYLTQ 108

Query: 65  FYQVFVN 71
           FY++F +
Sbjct: 109 FYEMFKD 115

>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A Length = 128

 Score = 87.4 bits (217), Expect = 2e-24
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 7/68 (10%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           D+  L  +N   N E+AF +AE H   P LLD        EDMV    PD   + TY+ +
Sbjct: 54  DYGQLSPQNRRQNFEVAFSSAETHADCPQLLDT-------EDMVRLREPDWKCVYTYIQE 106

Query: 65  FYQVFVNQ 72
           FY+  V +
Sbjct: 107 FYRCLVQK 114

>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A Length = 116

 Score = 82.3 bits (204), Expect = 1e-22
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 9/65 (13%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           + + L           A + AE  LGI  +       + A+ +V     D L ++ YLS 
Sbjct: 54  EPSELQGLGALEATAWALKVAENELGITPV-------VSAQAVVA--GSDPLGLIAYLSH 104

Query: 65  FYQVF 69
           F+  F
Sbjct: 105 FHSAF 109

>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 80.4 bits (199), Expect = 6e-22
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 8/65 (12%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           D+ SL+ ++I  NN+ A+      +GI  LL+         DMV  A+PD+L+++TYL Q
Sbjct: 56  DYKSLNPQDIKENNKKAY-DGFASIGISRLLEP-------SDMVLLAIPDKLTVMTYLYQ 107

Query: 65  FYQVF 69
               F
Sbjct: 108 IRAHF 112

>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1 Length = 118

 Score = 80.4 bits (199), Expect = 6e-22
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 8/68 (11%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
            +  + + +     E AF  A+ +LGI  L       LD ED+    +PD+ SI+ YL+ 
Sbjct: 55  SWDKVVKMSPIERLEHAFSKAQTYLGIEKL-------LDPEDVAV-RLPDKKSIIMYLTS 106

Query: 65  FYQVFVNQ 72
            ++V   Q
Sbjct: 107 LFEVLPQQ 114

>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K Length = 254

 Score = 83.8 bits (207), Expect = 7e-22
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 7/68 (10%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           D+A L + +   N   AF  AE++L IP +LDA       ED+V    PD  +I+TY+S 
Sbjct: 187 DYAKLRKDDPIGNLNTAFEVAEKYLDIPKMLDA-------EDIVNTPKPDEKAIMTYVSC 239

Query: 65  FYQVFVNQ 72
           FY  F   
Sbjct: 240 FYHAFAGA 247

>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} Length = 127

 Score = 79.7 bits (197), Expect = 2e-21
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 8/65 (12%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           DF SL + N + N + AF  AE+ LG+  LLD         + V    PD  SI+TY++ 
Sbjct: 54  DFESLKKCNAHYNLQNAFNLAEKELGLTKLLDP--------EDVNVDQPDEKSIITYVAT 105

Query: 65  FYQVF 69
           +Y  F
Sbjct: 106 YYHYF 110

>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A Length = 109

 Score = 78.8 bits (195), Expect = 2e-21
 Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 8/65 (12%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           DF  L + N + N + AF  AE+HLG+  L       LD ED+     PD  SI+TY+  
Sbjct: 50  DFDKLKKSNAHYNLQNAFNLAEQHLGLTKL-------LDPEDISV-DHPDEKSIITYVVT 101

Query: 65  FYQVF 69
           +Y  F
Sbjct: 102 YYHYF 106

>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens} Length = 296

 Score = 75.2 bits (184), Expect = 2e-18
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 8/65 (12%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           D   + ++    N + AF  AER LG+  L       LD ED+     PD  SI+TY+S 
Sbjct: 236 DMNKVYRQTNLENLDQAFSVAERDLGVTRL-------LDPEDVDV-PQPDEKSIITYVSS 287

Query: 65  FYQVF 69
            Y   
Sbjct: 288 LYDAM 292

>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A Length = 245

 Score = 73.1 bits (179), Expect = 8e-18
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 8/65 (12%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           D   + ++    N + AF  AER LG+  L       LD ED+     PD  SI+TY+S 
Sbjct: 180 DMNKVYRQTNLENLDQAFSVAERDLGVTRL-------LDPEDVDV-PQPDEKSIITYVSS 231

Query: 65  FYQVF 69
            Y   
Sbjct: 232 LYDAM 236

>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A Length = 246

 Score = 68.5 bits (167), Expect = 4e-16
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 4   DDFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLS 63
           D  + + Q++     E AF  A   LGI  L       LD ED+     PD+ SIL Y++
Sbjct: 182 DWNSVVSQQSATQRLEHAFNIARYQLGIEKL-------LDPEDVDT-TYPDKKSILMYIT 233

Query: 64  QFYQVFVNQ 72
             +QV   Q
Sbjct: 234 SLFQVLPQQ 242

>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A 2wfn_A Length = 272

 Score = 61.6 bits (149), Expect = 2e-13
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 8/65 (12%)

Query: 4   DDFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLS 63
            D+ S D     +N   A + A+  LGIP +       +  E++V+    D+ S++TYLS
Sbjct: 214 PDWDSWDASKPVTNAREAMQQADDWLGIPQV-------ITPEEIVD-PNVDKHSVMTYLS 265

Query: 64  QFYQV 68
           QF + 
Sbjct: 266 QFPKA 270

>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A Length = 245

 Score = 58.8 bits (142), Expect = 1e-12
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 8/65 (12%)

Query: 4   DDFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLS 63
            D+ S D +    N   A + A+  LG+P +       +  E+++     D  S++TYLS
Sbjct: 187 PDWESWDPQKPVDNAREAVQQADDWLGVPQV-------ITPEEIIH-PDVDEHSVMTYLS 238

Query: 64  QFYQV 68
           QF + 
Sbjct: 239 QFPKA 243

>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 Length = 275

 Score = 53.0 bits (127), Expect = 3e-10
 Identities = 7/62 (11%), Positives = 22/62 (35%), Gaps = 11/62 (17%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           + +  ++ +     E   + A++ LG    +          D+V     +    L +++ 
Sbjct: 224 NMSGFNETDDLKRAESMLQQADK-LGCRQFVTP-------ADVV---SGNPKLNLAFVAN 272

Query: 65  FY 66
            +
Sbjct: 273 LF 274

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863

 Score = 53.0 bits (126), Expect = 3e-10
 Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 7/68 (10%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           D+  L + +  +N   AF  AE++L IP +       LDAED+V  A PD  +I+TY+S 
Sbjct: 168 DYGKLRKDDPLTNLNTAFDVAEKYLDIPKM-------LDAEDIVGTARPDEKAIMTYVSS 220

Query: 65  FYQVFVNQ 72
           FY  F   
Sbjct: 221 FYHAFSGA 228

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 513

 Score = 48.6 bits (115), Expect = 1e-08
 Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 11/61 (18%)

Query: 8   SLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQ 67
              +     N  LA   A R LG    +         ED+V         +L ++     
Sbjct: 464 GSTEELAIQNARLAISIA-RKLGAVIFILP-------EDIVA---VRPRLVLHFIGSLMA 512

Query: 68  V 68
           V
Sbjct: 513 V 513

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 513

 Score = 39.7 bits (92), Expect = 1e-05
 Identities = 10/65 (15%), Positives = 19/65 (29%), Gaps = 11/65 (16%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
             A L   ++    E   + AE+ L            L    MV     +    L +++ 
Sbjct: 209 SRAPLQTTDVLQRAEQVLQNAEK-LDCRKY-------LTPTAMV---AGNPKLNLAFVAH 257

Query: 65  FYQVF 69
            +   
Sbjct: 258 LFNTH 262

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Length = 506

 Score = 48.5 bits (115), Expect = 1e-08
 Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 11/60 (18%)

Query: 13  NIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQ 72
               N      +  R LG    L         ED+VE    ++  IL   +      + +
Sbjct: 458 EKRLNATYIV-SVARKLGCSVFLLP-------EDIVE---VNQKMILILTASIMYWSLQR 506

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Length = 506

 Score = 41.2 bits (96), Expect = 4e-06
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 11/63 (17%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           D A+LD ++     EL    AER +            L AE++VE         L +++Q
Sbjct: 200 DPATLDAKDPLERAELVLSHAER-MNCKRY-------LTAEEIVE---GSSTLNLAFVAQ 248

Query: 65  FYQ 67
            + 
Sbjct: 249 IFH 251

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	72
2d88_A	121	Protein mical-3; all alpha, calponin homology doma	99.84
1bkr_A	109	Spectrin beta chain; filamentous actin-binding dom	99.84
2d87_A	128	Smoothelin splice isoform L2; all alpha, calponin	99.82
1wyl_A	116	NEDD9 interacting protein with calponin homology a	99.81
1wyq_A	127	Spectrin beta chain, brain 2; NPPSFA, structural g	99.81
1bhd_A	118	Utrophin; calponin homology, actin binding, struct	99.79
2d89_A	119	EHBP1 protein; all alpha, calponin homology domain	99.79
4b7l_A	347	Filamin-B; structural protein, FR 1 filamin hinge	99.7
1wku_A	254	Alpha-actinin 3; calponin homology domain, actin b	99.68
3hoc_A	272	Filamin-A; calponin homology domain, actin binding	99.65
2wa7_A	245	Filamin-B; disease mutation, skeletal dysplasia, s	99.65
3f7p_A	296	Plectin-1; plakin, hemidesmosome, cell adhesion, e	99.64
1sh5_A	245	Plectin 1, PLTN, PCN; actin-binding domain, calpon	99.57
1dxx_A	246	Dystrophin; structural protein, muscular dystrophy	99.54
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	99.53
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	99.34
1aoa_A	275	T-fimbrin; actin-binding protein, calcium-binding,	99.3
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	99.24
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	99.16
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	99.13
1wjo_A	124	T-plastin; CH domain, actin binding, structural ge	99.04
2yrn_A	129	Neuron navigator 2 isoform 4; calponin homolgy dom	83.3
2vzc_A	131	Alpha-parvin; membrane, cytoplasm, cytoskeleton, c	82.09

>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A

Probab=99.84  E-value=2e-21  Score=126.06  Aligned_cols=62  Identities=44%  Similarity=0.799  Sum_probs=59.1

Q ss_pred             CCCccCCCccCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHHhhhc
Q psy6951           3 KDDFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVN   71 (72)
Q Consensus         3 ~id~~sl~~~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~~   71 (72)
                      +|||++|++++..+|+++||++||++||||++|+       ||||+....||++||||||++||++|++
T Consensus        54 lid~~~l~~~~~~~n~~~af~~Ae~~lgi~~lL~-------peD~~~~~~pD~ksimtYvs~l~~~~~~  115 (121)
T 2d88_A           54 LIDFDSLDEQNVEKNNQLAFDIAEKELGISPIMT-------GKEMASVGEPDKLSMVMYLTQFYEMFKD  115 (121)
T ss_dssp             TSCTTTSCTTCHHHHHHHHHHHHHHHTCCCCSSC-------HHHHHHSSCCCHHHHHHHHHHHHHHHSS
T ss_pred             cCCHHHcCccCHHHHHHHHHHHHHHHcCCCCcCC-------HHHHhccCCCcHHHHHHHHHHHHHHccc
Confidence            5799999999999999999999999999999999       9999866899999999999999999986

>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A

Probab=99.84  E-value=2.5e-21  Score=123.60  Aligned_cols=61  Identities=41%  Similarity=0.627  Sum_probs=57.9

Q ss_pred             CCCccCCCccCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHHhhhc
Q psy6951           3 KDDFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVN   71 (72)
Q Consensus         3 ~id~~sl~~~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~~   71 (72)
                      +|||++|+++++.+|+++||++||++||||++|+       ||||+ .+.||++||||||++||++|++
T Consensus        48 lid~~~l~~~~~~~n~~~af~~Ae~~lgi~~ll~-------~eDv~-~~~pD~ksi~tYvs~~~~~f~~  108 (109)
T 1bkr_A           48 LIDFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLD-------PEDIS-VDHPDEKSIITYVVTYYHYFSK  108 (109)
T ss_dssp             GCCGGGCCTTCHHHHHHHHHHHHHHHHCCCCCCC-------HHHHS-SSSCCHHHHHHHHHHHHHHHTC
T ss_pred             CCCHHHcCcCCHHHHHHHHHHHHHHHcCCCccCC-------HHHcc-CCCCcHHHHHHHHHHHHHHhhc
Confidence            5799999999999999999999999999999999       99994 5899999999999999999986

>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A

Probab=99.82  E-value=8.1e-21  Score=124.50  Aligned_cols=62  Identities=40%  Similarity=0.653  Sum_probs=59.0

Q ss_pred             CCCccCCCccCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHHhhhc
Q psy6951           3 KDDFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVN   71 (72)
Q Consensus         3 ~id~~sl~~~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~~   71 (72)
                      +|||++|++++..+|+++||++||++||||++|+       ||||++...||++||||||++||++|.+
T Consensus        52 lid~~~l~~~~~~~n~~~af~~Ae~~lgip~lL~-------peD~v~~~~pD~ksvmtYvs~l~~~~~~  113 (128)
T 2d87_A           52 AFDYGQLSPQNRRQNFEVAFSSAETHADCPQLLD-------TEDMVRLREPDWKCVYTYIQEFYRCLVQ  113 (128)
T ss_dssp             TSCSTTSCSSCHHHHHHHHHHHHHHHHCCCCCSC-------HHHHHHSSSCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHcCccCHHHHHHHHHHHHHHcCCCCcccC-------HHHHhccCCccHHHHHHHHHHHHHHHhh
Confidence            5799999999999999999999999999999999       9999887889999999999999999964

>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A

Probab=99.81  E-value=9.7e-21  Score=121.97  Aligned_cols=60  Identities=27%  Similarity=0.413  Sum_probs=56.8

Q ss_pred             CCCccCCCccCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHHhhhc
Q psy6951           3 KDDFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVN   71 (72)
Q Consensus         3 ~id~~sl~~~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~~   71 (72)
                      +|||++|+++++.+|+++||++||++||||++|+       ||||+..  ||++||||||++||++|++
T Consensus        52 lid~~~l~~~~~~~n~~~af~~Ae~~lgi~~lL~-------peD~~~~--~d~ksv~tYvs~l~~~~~~  111 (116)
T 1wyl_A           52 LLEPSELQGLGALEATAWALKVAENELGITPVVS-------AQAVVAG--SDPLGLIAYLSHFHSAFKS  111 (116)
T ss_dssp             SCCCSSGGGCCHHHHHHHHHHHHHHTTCCCCCSC-------HHHHHHT--SCHHHHHHHHHHHHHHSCC
T ss_pred             CCCHHHhccCCHHHHHHHHHHHHHHHcCCccccC-------HHHHhcC--CchhHHHHHHHHHHHHccC
Confidence            5799999999999999999999999999999999       9999753  9999999999999999976

>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}

Probab=99.81  E-value=2.8e-20  Score=121.64  Aligned_cols=61  Identities=41%  Similarity=0.607  Sum_probs=57.7

Q ss_pred             CCCccCCCccCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHHhhhc
Q psy6951           3 KDDFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVN   71 (72)
Q Consensus         3 ~id~~sl~~~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~~   71 (72)
                      +|||++|++++..+|+++||++||++||||++|+       ||||+ .+.||++||||||++||++|++
T Consensus        52 lid~~~l~~~~~~~n~~~af~~Ae~~Lgi~~ll~-------~eDv~-~~~pDeksimtYvs~l~~~~~~  112 (127)
T 1wyq_A           52 LLDFESLKKCNAHYNLQNAFNLAEKELGLTKLLD-------PEDVN-VDQPDEKSIITYVATYYHYFSK  112 (127)
T ss_dssp             TCCTTTSCSSCCHHHHHHHHHHHHHTTCCCCCSC-------TTTSC-SSSCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHhCcCCHHHHHHHHHHHHHHHcCCCcccC-------HHHhc-cCCCcHHHHHHHHHHHHHHhhc
Confidence            5799999999999999999999999999999999       99994 5899999999999999999975

>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1

Probab=99.79  E-value=1.5e-20  Score=121.60  Aligned_cols=62  Identities=32%  Similarity=0.491  Sum_probs=56.2

Q ss_pred             CCCccCCCccCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHHhhhcC
Q psy6951           3 KDDFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQ   72 (72)
Q Consensus         3 ~id~~sl~~~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~~~   72 (72)
                      +|||+++++++..+|+++||++||++||||++|+       ||||+ .+.||++||||||++||++|+++
T Consensus        53 lid~~~l~~~~~~~n~~~af~~Ae~~lgi~~ll~-------~eDv~-~~~pD~ksvmtYvs~l~~~~~~~  114 (118)
T 1bhd_A           53 LFSWDKVVKMSPIERLEHAFSKAQTYLGIEKLLD-------PEDVA-VRLPDKKSIIMYLTSLFEVLPQQ  114 (118)
T ss_dssp             GSCHHHHHHSCHHHHHHHHHHHHHHHHCCCCCSC-------HHHHH-TSCCCHHHHHHHHHHHHHHC---
T ss_pred             cCCHHHhCcCCHHHHHHHHHHHHHHHcCCCcccC-------HHHhh-cCCCcHHHHHHHHHHHHHHCcCC
Confidence            5799999999999999999999999999999999       99995 57899999999999999999864

>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.79  E-value=4.9e-20  Score=119.11  Aligned_cols=61  Identities=38%  Similarity=0.613  Sum_probs=57.5

Q ss_pred             CCCccCCCccCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHHhhhc
Q psy6951           3 KDDFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVN   71 (72)
Q Consensus         3 ~id~~sl~~~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~~   71 (72)
                      +|||+++++++..+|+++||++| ++||||++|+       ||||++...||++||||||++||++|++
T Consensus        54 lid~~~l~~~~~~~n~~~af~~a-~~LGi~~ll~-------peDi~~~~~pD~ksvmtYvs~l~~~f~~  114 (119)
T 2d89_A           54 LIDYKSLNPQDIKENNKKAYDGF-ASIGISRLLE-------PSDMVLLAIPDKLTVMTYLYQIRAHFSS  114 (119)
T ss_dssp             TSCGGGCCTTCSHHHHHHHHHHH-HHHTCCCCSC-------HHHHHHSSSCCHHHHHHHHHHHHHHHSC
T ss_pred             cCChhhhcccCHHHHHHHHHHHH-HHhCCCcccC-------HHHHhccCCCcHHHHHHHHHHHHHHccC
Confidence            57999999999999999999999 5899999999       9999877789999999999999999986

>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A

Probab=99.70  E-value=6.8e-18  Score=124.42  Aligned_cols=59  Identities=31%  Similarity=0.527  Sum_probs=55.8

Q ss_pred             CccCCCccCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHHhhhc
Q psy6951           5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVN   71 (72)
Q Consensus         5 d~~sl~~~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~~   71 (72)
                      ||+++++++..+|+++||++||++||||++|+       ||||+. ..||++|||||||+||+++.+
T Consensus       185 d~~~l~~~~~~~n~~~Af~~Ae~~lGip~ll~-------peDi~~-~~pDeksimtYvs~~~~~~~~  243 (347)
T 4b7l_A          185 DWESWDPQKPVDNAREAMQQADDWLGVPQVIT-------PEEIIH-PDVDEHSVMTYLSQFPKAKLK  243 (347)
T ss_dssp             TGGGSCTTCHHHHHHHHHHHHHHHHCCCCSSC-------HHHHTC-TTCCHHHHHHHHTTGGGCCCC
T ss_pred             chhhcCcCCHHHHHHHHHHHHHHhcCCCcccC-------HHHcCC-CCCChhHHHHHHHHHhhhccC
Confidence            89999999999999999999999999999999       999975 689999999999999998754

>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K

Probab=99.68  E-value=2.7e-17  Score=116.49  Aligned_cols=62  Identities=42%  Similarity=0.658  Sum_probs=59.0

Q ss_pred             CCCccCCCccCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHHhhhc
Q psy6951           3 KDDFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVN   71 (72)
Q Consensus         3 ~id~~sl~~~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~~   71 (72)
                      .+||+.+++.+..+|+++||++|+++||||++++       ||||++...||++||||||++||++|++
T Consensus       185 ~id~~~l~~~~~~~n~~~a~~~A~~~lGi~~~l~-------peDiv~~~~pD~k~imtyva~l~~~~~~  246 (254)
T 1wku_A          185 LIDYAKLRKDDPIGNLNTAFEVAEKYLDIPKMLD-------AEDIVNTPKPDEKAIMTYVSCFYHAFAG  246 (254)
T ss_dssp             SCCGGGCCTTCHHHHHHHHHHHHHHHSCCCCCSC-------HHHHHHSSSCCHHHHHHHHHHHHHHHHH
T ss_pred             cccccccCcCCHHHHHHHHHHHHHHHcCCCCcCC-------HHHHhccCCCcHHHHHHHHHHHHHHhhc
Confidence            5799999999999999999999999999999999       9999887889999999999999999975

>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A

Probab=99.65  E-value=4.4e-17  Score=117.46  Aligned_cols=56  Identities=36%  Similarity=0.592  Sum_probs=52.1

Q ss_pred             CccCCCccCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHHh
Q psy6951           5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQV   68 (72)
Q Consensus         5 d~~sl~~~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~   68 (72)
                      ||+.+++++..+|+++||++||++||||++++       ||||+. ..||++||||||++||++
T Consensus       215 d~~~l~~~~~~~n~~~Af~~Ae~~lGi~~ll~-------peDiv~-~~pD~ksimtYvs~~~~a  270 (272)
T 3hoc_A          215 DWDSWDASKPVTNAREAMQQADDWLGIPQVIT-------PEEIVD-PNVDKHSVMTYLSQFPKA  270 (272)
T ss_dssp             TGGGSCTTCHHHHHHHHHHHHHHHHCCCCSSC-------HHHHTC-TTCCHHHHHHHHTTCC--
T ss_pred             chhhcCccCHHHHHHHHHHHHHHhCCCCccCC-------HHHhcc-CCCChHHHHHHHHHhhcc
Confidence            89999999999999999999999999999999       999976 589999999999999975

>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A

Probab=99.65  E-value=9.3e-17  Score=112.91  Aligned_cols=56  Identities=32%  Similarity=0.551  Sum_probs=53.5

Q ss_pred             CccCCCccCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHHh
Q psy6951           5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQV   68 (72)
Q Consensus         5 d~~sl~~~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~   68 (72)
                      ||+.+++.+..+|++.||++|+++||||++++       ||||+. +.||++|||||||+||++
T Consensus       188 ~~~~l~~~~~~~n~~~a~~~A~~~lGi~~~l~-------peDi~~-~~~d~ksi~tyvs~~~~~  243 (245)
T 2wa7_A          188 DWESWDPQKPVDNAREAVQQADDWLGVPQVIT-------PEEIIH-PDVDEHSVMTYLSQFPKA  243 (245)
T ss_dssp             TGGGSCTTCHHHHHHHHHHHHHHHSCCCCSSC-------HHHHTC-TTCCHHHHHHHHTHHHHC
T ss_pred             cccccCcccHHHHHHHHHHHHHHhCCCCccCC-------HHHhcc-CCCcHHHHHHHHHHHhcc
Confidence            89999999999999999999999999999999       999976 789999999999999985

>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}

Probab=99.64  E-value=7.5e-17  Score=117.59  Aligned_cols=61  Identities=36%  Similarity=0.537  Sum_probs=56.6

Q ss_pred             CCCccCCCccCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHHhhhc
Q psy6951           3 KDDFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVN   71 (72)
Q Consensus         3 ~id~~sl~~~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~~   71 (72)
                      +|||+.+++.+..+|+++||++||++||||++++       |||++ ...||++||||||++||++|++
T Consensus       234 lid~~~l~~~~~~~N~~~Af~~Ae~~LGi~~ll~-------pEDi~-~~~pDeksimtyvs~ly~~fp~  294 (296)
T 3f7p_A          234 LIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLD-------PEDVD-VPQPDEKSIITYVSSLYDAMPR  294 (296)
T ss_dssp             GCCHHHHTTSCHHHHHHHHHHHHHHHHCCCCCCC-------HHHHS-SSSCCHHHHHHHHHHHHHTCC-
T ss_pred             ccCHHHcCcccHHHHHHHHHHHHHHhCCCCccCC-------HHHhc-CCCCcHHHHHHHHHHHHHHCcC
Confidence            5799999999999999999999999999999999       99985 4789999999999999999974

>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A

Probab=99.57  E-value=6.8e-16  Score=108.02  Aligned_cols=61  Identities=36%  Similarity=0.537  Sum_probs=55.8

Q ss_pred             CCCccCCCccCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHHhhhc
Q psy6951           3 KDDFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVN   71 (72)
Q Consensus         3 ~id~~sl~~~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~~   71 (72)
                      .+||+.+++.+..+|++.||++|+++||||++++       |||++ ...||++||||||++||++|++
T Consensus       178 ~i~~~~l~~~~~~~n~~~a~~~a~~~lGi~~~l~-------peDi~-~~~pd~k~i~tyva~l~~~~~~  238 (245)
T 1sh5_A          178 LIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLD-------PEDVD-VPQPDEKSIITYVSSLYDAMPR  238 (245)
T ss_dssp             TCCHHHHHHSCHHHHHHHHHHHHHHHHCCCCCCC-------HHHHS-SSSCCHHHHHHHHHHHHHHCC-
T ss_pred             CCCHHHcccCCHHHHHHHHHHHHHHhCCCCccCC-------HHHhc-cCCCcHHHHHHHHHHHHHHcCC
Confidence            4788889899999999999999999999999999       99995 4689999999999999999875

>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A

Probab=99.54  E-value=1.8e-15  Score=106.22  Aligned_cols=62  Identities=39%  Similarity=0.529  Sum_probs=56.1

Q ss_pred             CCCccCCC-ccCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHHhhhcC
Q psy6951           3 KDDFASLD-QRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQ   72 (72)
Q Consensus         3 ~id~~sl~-~~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~~~   72 (72)
                      ++||+++. +++..+|++.||++|++++|||++++       |||++ ...||++||||||+++|++|+++
T Consensus       180 li~~~~~~~~~~~~~n~~~a~~~A~~~lGi~~~l~-------peDi~-~~~pD~k~i~tyva~l~~~~~~~  242 (246)
T 1dxx_A          180 LFDWNSVVSQQSATQRLEHAFNIARYQLGIEKLLD-------PEDVD-TTYPDKKSILMYITSLFQVLPQQ  242 (246)
T ss_dssp             GSCHHHHHTCCCHHHHHHHHHHHHHHTTCCCCCCC-------HHHHS-SSSCCHHHHHHHHHHHHTTSCCC
T ss_pred             ccchhhhcccCCHHHHHHHHHHHHHHhCCCCccCC-------HHHhh-cCCCcHHHHHHHHHHHHHHccCC
Confidence            46788876 78999999999999999999999999       99996 47999999999999999999864

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1

Probab=99.53  E-value=1.6e-15  Score=118.37  Aligned_cols=62  Identities=42%  Similarity=0.662  Sum_probs=58.9

Q ss_pred             CCCccCCCccCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHHhhhc
Q psy6951           3 KDDFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVN   71 (72)
Q Consensus         3 ~id~~sl~~~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~~   71 (72)
                      .|||+++++.++.+|++.||++|+++||||++++       ||||++.+.||++||||||++||++|.+
T Consensus       166 ~~~~~~~~~~~~~~n~~~a~~~a~~~lg~~~~l~-------~ed~~~~~~pd~~~~~~y~~~l~~~~~~  227 (863)
T 1sjj_A          166 LIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLD-------AEDIVGTARPDEKAIMTYVSSFYHAFSG  227 (863)
T ss_dssp             SSCSGGGGSCCCGGGCTHHHHHHHHHHCCCCSCC-------HHHHTTCSSCCHHHHHHHHHHTTTTTCC
T ss_pred             CcChhhCCCCCHHHHHHHHHHHHHHhCCCCCccC-------HHHHhCCCCCcHHHHHHHHHHHHHHhcc
Confidence            5799999999999999999999999999999999       9999887899999999999999999975

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B

Probab=99.34  E-value=6.5e-13  Score=100.95  Aligned_cols=59  Identities=17%  Similarity=0.171  Sum_probs=53.0

Q ss_pred             CCCccCCCcc----CHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHHhhhcC
Q psy6951           3 KDDFASLDQR----NIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQ   72 (72)
Q Consensus         3 ~id~~sl~~~----~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~~~   72 (72)
                      ++||+.+.+.    +.++|++.||++|+ +||||++++       ||||+   .||++|||||+++||.+|.+|
T Consensus       444 li~~~~l~~~~s~~~~~~N~~~a~~~a~-~lGi~~~l~-------peDi~---~~d~ksi~tyv~~l~~~~~~~  506 (506)
T 1pxy_A          444 VVNWNLVTKGETDDEKRLNATYIVSVAR-KLGCSVFLL-------PEDIV---EVNQKMILILTASIMYWSLQR  506 (506)
T ss_dssp             GCCTTSCCCSCSHHHHHHHHHHHHHHHH-HHTCCCCCC-------HHHHH---TTCHHHHHHHHHHHHHHHTTC
T ss_pred             eeehhhcccCCCchhHHHHHHHHHHHHH-HcCCCCcCC-------HHHcc---CCChhHHHHHHHHHHHHHhhC
Confidence            4699999874    67999999999996 799999999       99997   369999999999999999876

>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1

Probab=99.30  E-value=1.4e-12  Score=92.66  Aligned_cols=54  Identities=13%  Similarity=0.318  Sum_probs=50.4

Q ss_pred             CCCccCCCccCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHH
Q psy6951           3 KDDFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQ   67 (72)
Q Consensus         3 ~id~~sl~~~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~   67 (72)
                      .+||+.+++++..+|.+.||++|+ +||||++++       ||||+   .||+++||||++++|+
T Consensus       222 ~~~~~~~~~~~~~~n~~~a~~~A~-~lGi~~~l~-------peDi~---~~~~k~i~tyva~Lfn  275 (275)
T 1aoa_A          222 DINMSGFNETDDLKRAESMLQQAD-KLGCRQFVT-------PADVV---SGNPKLNLAFVANLFN  275 (275)
T ss_dssp             CCCCTTTTCSSHHHHHHHHHHHHT-TTTCCCSCC-------HHHHH---TTCHHHHHHHHHHHHC
T ss_pred             cccccCCCccCHHHHHHHHHHHHH-HcCCCCcCC-------HHHcC---CCChhHHHHHHHHHhC
Confidence            479999999999999999999998 799999999       99997   5899999999999984

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=99.24  E-value=4.3e-12  Score=96.69  Aligned_cols=58  Identities=17%  Similarity=0.265  Sum_probs=53.4

Q ss_pred             CCCccCCCccCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHHhhhc
Q psy6951           3 KDDFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVN   71 (72)
Q Consensus         3 ~id~~sl~~~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~~   71 (72)
                      .+||+.+++++..+|++.||++|++ +|||++++       ||||+.   ||++|+||||+++|++|++
T Consensus       207 ~i~~~~l~~~~~~~n~~~a~~~a~~-lgi~~~l~-------peDi~~---~~~k~il~yva~l~~~~~~  264 (513)
T 1rt8_A          207 LCSRAPLQTTDVLQRAEQVLQNAEK-LDCRKYLT-------PTAMVA---GNPKLNLAFVAHLFNTHPG  264 (513)
T ss_dssp             TCCSGGGGCCCHHHHHHHHHHHHHT-TTCCCSCC-------HHHHHT---TCHHHHHHHHHHHHHHCCC
T ss_pred             ccccCCCCccCHHHHHHHHHHHHHH-cCCCccCC-------HHHhcC---CCHHHHHHHHHHHHhhhcc
Confidence            4689999999999999999999996 99999999       999973   7899999999999999875

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=99.16  E-value=1.3e-11  Score=94.03  Aligned_cols=54  Identities=20%  Similarity=0.289  Sum_probs=47.4

Q ss_pred             CCCccCCCcc----CHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHH
Q psy6951           3 KDDFASLDQR----NIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQ   67 (72)
Q Consensus         3 ~id~~sl~~~----~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~   67 (72)
                      .+||+.+.+.    +.++|++.||++|+ +||||++++       ||||+..   +++||||||++||.
T Consensus       455 ~i~~~~l~~~~~~~~~~~n~~~af~~A~-~lGi~~~l~-------peDi~~~---~pksi~tyva~l~~  512 (513)
T 1rt8_A          455 YVDYNLVTDGSTEELAIQNARLAISIAR-KLGAVIFIL-------PEDIVAV---RPRLVLHFIGSLMA  512 (513)
T ss_dssp             GCCGGGCCCCCSHHHHHHHHHHHHHHHH-HTTCCCCCC-------HHHHHTT---CHHHHHHHHHHHHT
T ss_pred             cCCHHhhccccChhhHHHHHHHHHHHHH-HcCCCccCC-------HHHhcCC---CcccHHHHHHHHHh
Confidence            4789998764    79999999999997 599999999       9999753   45999999999986

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B

Probab=99.13  E-value=2.8e-11  Score=91.97  Aligned_cols=58  Identities=26%  Similarity=0.348  Sum_probs=52.5

Q ss_pred             CCCccCCCccCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHHhhhc
Q psy6951           3 KDDFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVN   71 (72)
Q Consensus         3 ~id~~sl~~~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~~   71 (72)
                      .+||+.+++++..+|++.||++|+ ++|||++++       ||||+.   ++++++||||+++|++|++
T Consensus       198 ~i~~~~l~~~~~~~n~~~a~~~a~-~lGi~~~l~-------peDi~~---~~~k~v~tyva~l~~~~~~  255 (506)
T 1pxy_A          198 HCDPATLDAKDPLERAELVLSHAE-RMNCKRYLT-------AEEIVE---GSSTLNLAFVAQIFHERNG  255 (506)
T ss_dssp             GCCGGGGGCCSHHHHHHHHHHHHH-HTTCCCCCC-------HHHHHT---TCHHHHHHHHHHHHHHCCC
T ss_pred             ccccccCCcCCHHHHHHHHHHHHH-HcCCCCcCC-------HHHHhc---CChhHHHHHHHHHhhhcCC
Confidence            468999999999999999999998 599999999       999974   4668999999999999875

>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A

Probab=99.04  E-value=8.3e-11  Score=77.15  Aligned_cols=57  Identities=18%  Similarity=0.225  Sum_probs=49.6

Q ss_pred             CCcc-----CCCccCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHHhhhc
Q psy6951           4 DDFA-----SLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVN   71 (72)
Q Consensus         4 id~~-----sl~~~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~~   71 (72)
                      +||+     .|+..+..+|.+.||++|+ ++||+.++.       |||+++.   ++++||||++++++...+
T Consensus        55 vd~~lv~~~~L~~~d~~~Na~~ais~Ar-klG~~~~l~-------pEDIve~---~pK~ilt~va~l~~~~~~  116 (124)
T 1wjo_A           55 INYDLVKSGNLTEDDKHNNAKYAVSMAR-RIGARVYAL-------PEDLVEV---KPKMVMTVFACLMGRGMK  116 (124)
T ss_dssp             CCTTTSCCSSCCHHHHHHHHHHHHHHHH-HTCCSCCCC-------HHHHHHT---CTTTTTHHHHHHHHHSCC
T ss_pred             cCHHHhcCCCCCHHHHHHHHHHHHHHHH-HcCCCcccC-------HHHHhcC---cchhhHHHHHHHHHHHhh
Confidence            5787     6777889999999999996 799999999       9999864   559999999999987643

>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=83.30  E-value=2  Score=26.73  Aligned_cols=51  Identities=18%  Similarity=0.165  Sum_probs=40.2

Q ss_pred             ccCHHhhHHHHHHHHHHhcCCch-hhhhhhccCCcccccccCCCCchhHHHHHHHHHHhhhcC
Q psy6951          11 QRNIYSNNELAFRTAERHLGIPA-LLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQ   72 (72)
Q Consensus        11 ~~~~~~N~~lAf~~Ae~~lGIp~-lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~~~   72 (72)
                      +-...+|+..|++.++ ..|++. =+.       ++|+++   -+.+.|+.-+-+++.+|..|
T Consensus        75 ~~~~~eNv~~aL~~~~-~~gv~~~~i~-------~~DI~d---gn~~~iL~Llw~L~r~~q~~  126 (129)
T 2yrn_A           75 RSQMIENIDACLNFLA-AKGINIQGLS-------AEEIRN---GNLKAILGLFFSLSRYKQQQ  126 (129)
T ss_dssp             TTHHHHHHHHHHHHHH-HHTCCCTTCC-------HHHHHH---TCHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHHHHH-HhCCcccCCC-------hhhhhc---CCHhHHHHHHHHHHHHHhhh
Confidence            3446899999999996 579874 245       999975   67889999999988888764

>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*

Probab=82.09  E-value=2.1  Score=27.07  Aligned_cols=48  Identities=23%  Similarity=0.255  Sum_probs=37.8

Q ss_pred             cCHHhhHHHHHHHHHHhcCCch-hhhhhhccCCcccccccCCCCchhHHHHHHHHHHhhh
Q psy6951          12 RNIYSNNELAFRTAERHLGIPA-LLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFV   70 (72)
Q Consensus        12 ~~~~~N~~lAf~~Ae~~lGIp~-lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~   70 (72)
                      ....+|+..|++.+++ .||.- =+.       |+|+++   -+++.++..+-+++..|.
T Consensus        80 ~~kieNv~~aL~~lk~-~gi~l~~I~-------~~DIvd---Gn~kliLgLiW~li~~~~  128 (131)
T 2vzc_A           80 EQKVLNVSFAFELMQD-GGLEKPKPR-------PEDIVN---CDLKSTLRVLYNLFTKYR  128 (131)
T ss_dssp             HHHHHHHHHHHHHHHH-TTCCCCSSC-------HHHHHT---TCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHH-cCCCcCCCC-------HHHhhC---CCHHhHHHHHHHHHHHHh
Confidence            3568999999999975 78863 345       999975   578899998888877764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	72
d1bhda_	108	a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxI	3e-16
d1sh5a2	110	a.40.1.1 (A:128-237) Actin binding domain of plect	1e-15
d1dxxa2	127	a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapie	3e-14
d1bkra_	108	a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens)	1e-13
d1pxya_	500	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	8e-09
d1pxya_	500	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	5e-08
d1rt8a_	505	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	3e-07
d1rt8a_	505	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	2e-06

>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Utrophin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (158), Expect = 3e-16
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 8/64 (12%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
            +  + + +     E AF  A+ +LGI  L       LD ED+    +PD+ SI+ YL+ 
Sbjct: 52  SWDKVVKMSPIERLEHAFSKAQTYLGIEKL-------LDPEDVAV-RLPDKKSIIMYLTS 103

Query: 65  FYQV 68
            ++V
Sbjct: 104 LFEV 107

>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Actin binding domain of plectin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (154), Expect = 1e-15
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 8/65 (12%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           D   + ++    N + AF  AER LG+  L       LD ED+     PD  SI+TY+S 
Sbjct: 53  DMNKVYRQTNLENLDQAFSVAERDLGVTRL-------LDPEDVDV-PQPDEKSIITYVSS 104

Query: 65  FYQVF 69
            Y   
Sbjct: 105 LYDAM 109

>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Length = 127

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (145), Expect = 3e-14
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 4   DDFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLS 63
           D  + + Q++     E AF  A   LGI  L       LD ED+     PD+ SIL Y++
Sbjct: 63  DWNSVVSQQSATQRLEHAFNIARYQLGIEKL-------LDPEDVDT-TYPDKKSILMYIT 114

Query: 64  QFYQVFVNQ 72
             +QV   Q
Sbjct: 115 SLFQVLPQQ 123

>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: beta-spectrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (140), Expect = 1e-13
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 8/65 (12%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           DF  L + N + N + AF  AE+HLG+  LLD  +  +D         PD  SI+TY+  
Sbjct: 49  DFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLDPEDISVD--------HPDEKSIITYVVT 100

Query: 65  FYQVF 69
           +Y  F
Sbjct: 101 YYHYF 105

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 500

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 47.7 bits (113), Expect = 8e-09
 Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 11/60 (18%)

Query: 13  NIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQ 72
               N      +  R LG    L         ED+VE    ++  IL   +      + +
Sbjct: 452 EKRLNATYIV-SVARKLGCSVFLLP-------EDIVE---VNQKMILILTASIMYWSLQR 500

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 500

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 45.4 bits (107), Expect = 5e-08
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 11/68 (16%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           D A+LD ++     EL    AER +     L A       E++VE         L +++Q
Sbjct: 194 DPATLDAKDPLERAELVLSHAER-MNCKRYLTA-------EEIVE---GSSTLNLAFVAQ 242

Query: 65  FYQVFVNQ 72
            +      
Sbjct: 243 IFHERNGL 250

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 505

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 43.1 bits (101), Expect = 3e-07
 Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 11/61 (18%)

Query: 8   SLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQ 67
              +     N  LA   A R LG    +         ED+V         +L ++     
Sbjct: 456 GSTEELAIQNARLAISIA-RKLGAVIFILP-------EDIVA---VRPRLVLHFIGSLMA 504

Query: 68  V 68
           V
Sbjct: 505 V 505

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 505

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.2 bits (96), Expect = 2e-06
 Identities = 10/65 (15%), Positives = 18/65 (27%), Gaps = 11/65 (16%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
             A L   ++    E   + AE  L            L    MV     +    L +++ 
Sbjct: 201 SRAPLQTTDVLQRAEQVLQNAE-KLDCRKY-------LTPTAMVA---GNPKLNLAFVAH 249

Query: 65  FYQVF 69
            +   
Sbjct: 250 LFNTH 254

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	72
d1bkra_	108	beta-spectrin {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1sh5a2	110	Actin binding domain of plectin {Human (Homo sapie	99.74
d1bhda_	108	Utrophin {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1dxxa2	127	Dystrophin {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1rt8a_	505	Fimbrin (Plastin), actin-crosslinking domain {Fiss	99.15
d1pxya_	500	Fimbrin (Plastin), actin-crosslinking domain {Thal	99.15
d1rt8a_	505	Fimbrin (Plastin), actin-crosslinking domain {Fiss	99.13
d1pxya_	500	Fimbrin (Plastin), actin-crosslinking domain {Thal	98.72
d1wjoa_	124	Fimbrin (Plastin), actin-crosslinking domain {Huma	98.4
d1aoaa2	116	Fimbrin (Plastin), actin-crosslinking domain {Huma	98.33
d1sh5a1	120	Actin binding domain of plectin {Human (Homo sapie	90.7
d1dxxa1	111	Dystrophin {Human (Homo sapiens) [TaxId: 9606]}	89.7
d1aoaa1	131	Fimbrin (Plastin), actin-crosslinking domain {Huma	88.07

>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: beta-spectrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.8e-19  Score=111.35  Aligned_cols=61  Identities=41%  Similarity=0.627  Sum_probs=57.6

Q ss_pred             CCCccCCCccCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHHhhhc
Q psy6951           3 KDDFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVN   71 (72)
Q Consensus         3 ~id~~sl~~~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~~   71 (72)
                      ++|++++.+.+..+|+++||++||+++|||++++       ||||. .+.||++||||||++||++|++
T Consensus        47 ~~~~~~l~~~~~~~~~~~a~~~ae~~lgip~ll~-------~ed~~-~~~pD~~si~~Yvs~~~~~f~~  107 (108)
T d1bkra_          47 LIDFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLD-------PEDIS-VDHPDEKSIITYVVTYYHYFSK  107 (108)
T ss_dssp             GCCGGGCCTTCHHHHHHHHHHHHHHHHCCCCCCC-------HHHHS-SSSCCHHHHHHHHHHHHHHHTC
T ss_pred             cccHHhcccCCHHHHHHHHHHHHHHhcCCCCcCC-------HHhcc-CCCCcHHHHHHHHHHHHHHHhc
Confidence            4789999999999999999999999999999999       99995 5899999999999999999975

>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Actin binding domain of plectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.9e-19  Score=113.59  Aligned_cols=60  Identities=37%  Similarity=0.545  Sum_probs=56.3

Q ss_pred             CCCccCCCccCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHHhhh
Q psy6951           3 KDDFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFV   70 (72)
Q Consensus         3 ~id~~sl~~~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~   70 (72)
                      ++||+++++.++.+|+++||++||++||||++++       ||||+ ...||++||||||++||++|+
T Consensus        51 ~id~~~l~~~~~~~~~~~a~~~Ae~~lgip~ll~-------~eD~~-~~~pD~~sv~~Yvs~ly~~~P  110 (110)
T d1sh5a2          51 LIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLD-------PEDVD-VPQPDEKSIITYVSSLYDAMP  110 (110)
T ss_dssp             TCCHHHHHHSCHHHHHHHHHHHHHHHHCCCCCCC-------HHHHS-SSSCCHHHHHHHHHHHHHHCC
T ss_pred             cCChhhcCccCHHHHHHHHHHHHHHcCCCCCCCC-------HHHHc-cCCCcHHHHHHHHHHHHHhCc
Confidence            4689999999999999999999999999999999       99995 589999999999999999985

>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Utrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.7e-18  Score=108.49  Aligned_cols=59  Identities=32%  Similarity=0.507  Sum_probs=54.8

Q ss_pred             CCCccCCCccCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHHhh
Q psy6951           3 KDDFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVF   69 (72)
Q Consensus         3 ~id~~sl~~~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f   69 (72)
                      ++|++++++.++.+|+++||++|++++|||++++       |+||. .+.||++||||||++||++.
T Consensus        50 ~i~~~~l~~~~~~~~~~~af~~a~~~lgip~ll~-------~~D~~-~~~pD~~si~~Yvs~~y~~l  108 (108)
T d1bhda_          50 LFSWDKVVKMSPIERLEHAFSKAQTYLGIEKLLD-------PEDVA-VRLPDKKSIIMYLTSLFEVL  108 (108)
T ss_dssp             GSCHHHHHHSCHHHHHHHHHHHHHHHHCCCCCSC-------HHHHH-TSCCCHHHHHHHHHHHHHHC
T ss_pred             ccChhhcCcCCHHHHHHHHHHHHHHhCCCCCCCC-------HHHhc-cCCCcHHHHHHHHHHHHHhC
Confidence            4688999999999999999999999999999999       99996 57899999999999999863

>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=9.9e-18  Score=107.83  Aligned_cols=62  Identities=39%  Similarity=0.547  Sum_probs=56.1

Q ss_pred             CCCccC-CCccCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHHhhhcC
Q psy6951           3 KDDFAS-LDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQ   72 (72)
Q Consensus         3 ~id~~s-l~~~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~~~   72 (72)
                      ++|+.+ +++.++.+|+++||++|++++|||++++       |+||. ...||++||||||++||++|.++
T Consensus        61 li~~~~~l~~~~~~~~~~~a~~~Ae~~lgip~ll~-------~~d~~-~~~pD~ksi~~Yvs~l~~~~~~~  123 (127)
T d1dxxa2          61 LFDWNSVVSQQSATQRLEHAFNIARYQLGIEKLLD-------PEDVD-TTYPDKKSILMYITSLFQVLPQQ  123 (127)
T ss_dssp             GSCHHHHHTCCCHHHHHHHHHHHHHHTTCCCCCCC-------HHHHS-SSSCCHHHHHHHHHHHHTTSCCC
T ss_pred             cccchhhcCcCCHHHHHHHHHHHHHHhCCCCCcCC-------HHHhc-cCCCcHHHHHHHHHHHHHHcCCc
Confidence            367765 7888999999999999999999999999       99995 57999999999999999999864

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.15  E-value=9.6e-12  Score=92.84  Aligned_cols=58  Identities=17%  Similarity=0.254  Sum_probs=53.2

Q ss_pred             CCCccCCCccCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHHhhhc
Q psy6951           3 KDDFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVN   71 (72)
Q Consensus         3 ~id~~sl~~~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~~   71 (72)
                      ++|++.++..+..+|++.||+.|| ++|||++++       |||++   .||++|+||||+++|+.|++
T Consensus       199 l~~~~~~~~~~~~~n~~~a~~~ae-~lgi~~~l~-------p~Div---~~~~k~~l~~va~l~~~~p~  256 (505)
T d1rt8a_         199 LCSRAPLQTTDVLQRAEQVLQNAE-KLDCRKYLT-------PTAMV---AGNPKLNLAFVAHLFNTHPG  256 (505)
T ss_dssp             TCCSGGGGCCCHHHHHHHHHHHHH-TTTCCCSCC-------HHHHH---TTCHHHHHHHHHHHHHHCCC
T ss_pred             ccChhhcCcCCHHHHHHHHHHHHH-HcCCCccCC-------HHHhc---CCChhhHHHHHHHHhhcCCC
Confidence            468999999999999999999997 599999999       99996   59999999999999999863

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.15  E-value=1.4e-11  Score=92.22  Aligned_cols=59  Identities=17%  Similarity=0.171  Sum_probs=50.0

Q ss_pred             CCCccCCCccC----HHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHHhhhcC
Q psy6951           3 KDDFASLDQRN----IYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQ   72 (72)
Q Consensus         3 ~id~~sl~~~~----~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~~~   72 (72)
                      .|||+.+++.+    .+.|++.||++|+ +||||++++       |||++   .||++|||||+|+|+++-.+|
T Consensus       438 ~id~~~~~~~~~~~~~~~N~~~a~~~a~-~lGip~ll~-------peDv~---~~deksv~tyvs~l~~~~l~~  500 (500)
T d1pxya_         438 VVNWNLVTKGETDDEKRLNATYIVSVAR-KLGCSVFLL-------PEDIV---EVNQKMILILTASIMYWSLQR  500 (500)
T ss_dssp             GCCTTSCCCSCSHHHHHHHHHHHHHHHH-HHTCCCCCC-------HHHHH---TTCHHHHHHHHHHHHHHHTTC
T ss_pred             ccCHhhcCCCCCchHHHHHHHHHHHHHH-HcCCCccCC-------HHHCC---CCCcchhHHHHHHHHHHHhcC
Confidence            57888888654    3678999999986 699999999       99995   599999999999998876554

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.13  E-value=1.2e-11  Score=92.23  Aligned_cols=55  Identities=22%  Similarity=0.336  Sum_probs=47.1

Q ss_pred             CCCccCCCccC----HHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHHh
Q psy6951           3 KDDFASLDQRN----IYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQV   68 (72)
Q Consensus         3 ~id~~sl~~~~----~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~   68 (72)
                      .|||+.+.+.+    +.+|++.||++|++ +|||++++       |||++   .||++|||||+|.+|++
T Consensus       447 ~i~~~~~~~~~~~e~~~~n~~~a~~~A~~-lgi~~ll~-------peDi~---~~~~ksimtyvssL~~~  505 (505)
T d1rt8a_         447 YVDYNLVTDGSTEELAIQNARLAISIARK-LGAVIFIL-------PEDIV---AVRPRLVLHFIGSLMAV  505 (505)
T ss_dssp             GCCGGGCCCCCSHHHHHHHHHHHHHHHHH-TTCCCCCC-------HHHHH---TTCHHHHHHHHHHHHTC
T ss_pred             CcCHHHhcCCCChhhHHHHHHHHHHHHHH-cCCCccCC-------HHHcC---CCCcchhHHhhhHHhcC
Confidence            46888887654    56799999999985 99999999       99996   48999999999999863

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.72  E-value=3.9e-09  Score=78.78  Aligned_cols=58  Identities=24%  Similarity=0.316  Sum_probs=52.7

Q ss_pred             CCCccCCCccCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHHhhhc
Q psy6951           3 KDDFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVN   71 (72)
Q Consensus         3 ~id~~sl~~~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~~   71 (72)
                      .+|++.+++.+..+|.+.||+.|+ .||||++++       |||++   .++++++|+|++++|+.+++
T Consensus       192 ~~~~~~~~~~~~~~~~~~a~~~a~-~lgip~~l~-------peDI~---~~~~k~~l~~va~lf~~~p~  249 (500)
T d1pxya_         192 HCDPATLDAKDPLERAELVLSHAE-RMNCKRYLT-------AEEIV---EGSSTLNLAFVAQIFHERNG  249 (500)
T ss_dssp             GCCGGGGGCCSHHHHHHHHHHHHH-HTTCCCCCC-------HHHHH---TTCHHHHHHHHHHHHHHCCC
T ss_pred             ccChhhcCcCCHHHHHHHHHHHHH-HhCCCccCC-------HHHhc---CCcHHHHHHHHHHHHHhccc
Confidence            468899999999999999999886 599999999       99996   57889999999999999865

>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=5.8e-08  Score=60.63  Aligned_cols=51  Identities=22%  Similarity=0.241  Sum_probs=42.6

Q ss_pred             CCccCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHHhhh
Q psy6951           9 LDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFV   70 (72)
Q Consensus         9 l~~~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~   70 (72)
                      .++.+..+|++.||+.|++ +||+..+.       |||+++   +++++||+|+.+++.+..
T Consensus        65 ~~~~~~~~N~~~al~~~~~-lgi~~~i~-------~eDI~~---gn~k~iL~~i~~L~~~~~  115 (124)
T d1wjoa_          65 LTEDDKHNNAKYAVSMARR-IGARVYAL-------PEDLVE---VKPKMVMTVFACLMGRGM  115 (124)
T ss_dssp             CCHHHHHHHHHHHHHHHHH-TCCSCCCC-------HHHHHH---TCTTTTTHHHHHHHHHSC
T ss_pred             ccHhhHHHHHHHHHHHHHH-hCCcccCC-------HHHccC---CCchHHHHHHHHHHHHHh
Confidence            3456678999999999975 89999999       999974   567999999999876543

>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=2e-07  Score=56.55  Aligned_cols=52  Identities=13%  Similarity=0.351  Sum_probs=45.3

Q ss_pred             CccCCCccCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHH
Q psy6951           5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQ   67 (72)
Q Consensus         5 d~~sl~~~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~   67 (72)
                      +...+.+.+..+|.+.+++.++ ++|||..++       |||++   .+++++|++|+.++|+
T Consensus        65 ~~~~~~~~~~~~n~~~~l~~~~-~lgi~~~i~-------~eDIv---~gn~k~iL~lv~~Lfn  116 (116)
T d1aoaa2          65 NMSGFNETDDLKRAESMLQQAD-KLGCRQFVT-------PADVV---SGNPKLNLAFVANLFN  116 (116)
T ss_dssp             CCTTTTCSSHHHHHHHHHHHHT-TTTCCCSCC-------HHHHH---TTCHHHHHHHHHHHHC
T ss_pred             ccCcchHHHHHHHHHHHHHHHH-HhCCCcCcC-------HHhCc---CCCHHHHHHHHHHHhC
Confidence            4456778899999999999885 699999999       99997   4889999999999984

>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Actin binding domain of plectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.70  E-value=0.17  Score=29.76  Aligned_cols=51  Identities=12%  Similarity=0.134  Sum_probs=40.1

Q ss_pred             CCccCHHhhHHHHHHHHHHhcCCchh-hhhhhccCCcccccccCCCCchhHHHHHHHHHHhhh
Q psy6951           9 LDQRNIYSNNELAFRTAERHLGIPAL-LDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFV   70 (72)
Q Consensus         9 l~~~~~~~N~~lAf~~Ae~~lGIp~l-Ld~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~   70 (72)
                      ..+....+|++.|++.++ ..|+... .+       ++|+++   .+.+.++..+-+++.+|.
T Consensus        61 ~~~~~k~eN~~~aL~~~~-~~~~~l~~i~-------~~dI~~---Gn~k~iL~llw~L~~~~~  112 (120)
T d1sh5a1          61 RMRFHKLQNVQIALDYLR-HRQVKLVNIR-------NDDIAD---GNPKLTLGLIWTIILHFQ  112 (120)
T ss_dssp             CSHHHHHHHHHHHHHHHH-HTTCCCCSCC-------HHHHHT---TCHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHH-HhcccccCCc-------HHhhcc---CcHHHHHHHHHHHHHHhc
Confidence            344567899999999987 4687644 56       999964   678999999999888875

>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.70  E-value=0.26  Score=28.60  Aligned_cols=49  Identities=12%  Similarity=0.192  Sum_probs=38.6

Q ss_pred             ccCHHhhHHHHHHHHHHhcCCchh-hhhhhccCCcccccccCCCCchhHHHHHHHHHHhhh
Q psy6951          11 QRNIYSNNELAFRTAERHLGIPAL-LDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFV   70 (72)
Q Consensus        11 ~~~~~~N~~lAf~~Ae~~lGIp~l-Ld~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~   70 (72)
                      +....+|+..|++.++ ..|+... ..       |+|+++   -+.+.|+.-+-+++.+|.
T Consensus        62 r~~~l~N~~~aL~~~k-~~~~~~~~i~-------~~dI~~---Gn~k~iL~llw~l~~~yq  111 (111)
T d1dxxa1          62 RVHALNNVNKALRVLQ-NNNVDLVNIG-------STDIVD---GNHKLTLGLIWNIILHWQ  111 (111)
T ss_dssp             HHHHHHHHHHHHHHHH-HTTCCCTTCC-------HHHHHT---TCHHHHHHHHHHHHHHHT
T ss_pred             HhhHHHHHHHHHHHHH-HhCCcccCCC-------HHHHHc---CCHHHHHHHHHHHHHHhC
Confidence            3456889999999987 5688654 56       999974   677899999988887763

>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.07  E-value=0.37  Score=28.90  Aligned_cols=48  Identities=25%  Similarity=0.256  Sum_probs=36.7

Q ss_pred             ccCHHhhHHHHHHHHHHhcCCchh-hhhhhccCCcccccccCCCCchhHHHHHHHHHHhh
Q psy6951          11 QRNIYSNNELAFRTAERHLGIPAL-LDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVF   69 (72)
Q Consensus        11 ~~~~~~N~~lAf~~Ae~~lGIp~l-Ld~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f   69 (72)
                      .....+|+..|++.++ ..|+.-. +.       |+|+++   .+++.|+.-+-++...|
T Consensus        70 ~~~~~~N~~~~L~~~k-~~gi~l~~i~-------~~DIvd---G~~k~iL~Lvw~li~~~  118 (131)
T d1aoaa1          70 PFIIQENLNLALNSAS-AIGCHVVNIG-------AEDLRA---GKPHLVLGLLWQIIKIG  118 (131)
T ss_dssp             HHHHHHHHHHHHHHHH-HTTCCCTTCC-------HHHHHT---TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-HhccccCCCC-------hhhhhc---CCHHHHHHHHHHHHHHH
Confidence            3456789999999996 5788642 56       999974   67788988887776554