Psyllid ID: psy6970

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKSPSLTTLNAYLITNRTISCPTKTTWR
Secondary Structure (PSIPRED)
cEEEEEEEEccccccccccccccccccccccccccccccccEEEEccccccccccccccEEEEEcccEEEEEEEEEEEEEEccccccccccccccccEEEEcEEEcccEEEEEEcccccEEEccccccccEEEEEEEEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEcccccccccccccccccccHHHHHHcccccEEEEcccccccccccccEEEEEccccEEEEEEEEEEEEccccccccccccccccEEEEEEcccccccEEEEEcccccEEEEccccEEccEEEEEEEEEccccccccc
Coil and Loop (DISEMBL)
KYEVEFLLQqqwhdprleyfnqTTYDFLNAIhhhsdvwlpdtyfimhgdfkdplipvHFALRIYRNGTVNYLMRRHLILSCqgslhifpfddptcsfaMESISYEQSAIEYVWKndedtlrkspslttLNAYLITnrtiscptkttwr
Flexible Loop (DISEMBL)
KYEVEFLlqqqwhdprLEYFNQTTYDFLNAIHHHSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKndedtlrkspslttlnaylitnrtiscptkttwr
Low Complexity Region (SEG)
KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKSPSLTTLNAYLITNRTISCPTKTTWR
Disordered region (IsUnstruct)
***VEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKSPSLTTLNAYLITNRTISC*******
Disordered Region (DISOPRED)
KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKSPSLTTLNAYLITNRTISC*******
Disordered Region (DISEMBL)
KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKSPSLTTLNAYLITNRTISCPTKTTWR
Disordered Region (DISPRO)
KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKSPSLTTLNAYLITNRTISCPTKT***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKSPSLTTLNAYLITNRTISCPTKTTWR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	148	2.2.26 [Sep-21-2011]
Q5JXX5	417	Glycine receptor subunit	yes	N/A	0.952	0.338	0.335	4e-13
Q61603	456	Glycine receptor subunit	yes	N/A	0.844	0.274	0.351	5e-12
Q17328	434	Glutamate-gated chloride	no	N/A	0.932	0.317	0.302	2e-11
Q8QZW7	440	Gamma-aminobutyric acid r	no	N/A	0.831	0.279	0.277	9e-11
Q94900	456	Glutamate-gated chloride	no	N/A	0.777	0.252	0.3	9e-11
O09028	440	Gamma-aminobutyric acid r	no	N/A	0.831	0.279	0.277	1e-10
P26048	451	Gamma-aminobutyric acid r	no	N/A	0.939	0.308	0.297	1e-10
Q5RCC5	451	Gamma-aminobutyric acid r	no	N/A	0.939	0.308	0.297	1e-10
P10063	451	Gamma-aminobutyric acid r	no	N/A	0.939	0.308	0.297	1e-10
P47869	451	Gamma-aminobutyric acid r	no	N/A	0.939	0.308	0.297	1e-10

>sp|Q5JXX5|GLRA4_HUMAN Glycine receptor subunit alpha-4 OS=Homo sapiens GN=GLRA4 PE=2 SV=3

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 71/146 (48%), Gaps = 5/146 (3%)

Query: 2   YEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSD-VWLPDTYFI--MHGDFKDPLIPVH 58
           Y V   L+QQW+DPRL Y  +   D L+      D +W PD +F      +F + +   +
Sbjct: 92  YRVNVFLRQQWNDPRLSY-REYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHE-VTTDN 149

Query: 59  FALRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDED 118
             LRI++NG V Y +R  LILSC   L  FP D  TC+  +ES  Y    + + W  D  
Sbjct: 150 KLLRIFKNGNVLYSIRLTLILSCLMDLKNFPMDIQTCTMQLESFGYTMKDLVFEWLEDAP 209

Query: 119 TLRKSPSLTTLNAYLITNRTISCPTK 144
            ++ +  LT     L   + + C TK
Sbjct: 210 AVQVAEGLTLPQFILRDEKDLGCCTK 235

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).
Homo sapiens (taxid: 9606)

>sp|Q61603|GLRA4_MOUSE Glycine receptor subunit alpha-4 OS=Mus musculus GN=Glra4 PE=2 SV=3

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 64/128 (50%), Gaps = 3/128 (2%)

Query: 2   YEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSD-VWLPDTYFIMH-GDFKDPLIPVHF 59
           Y V   L+QQW+DPRL Y  +   D L+      D +W PD +F    G     +   + 
Sbjct: 91  YRVNVFLRQQWNDPRLAY-REYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNK 149

Query: 60  ALRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDT 119
            LRI++NG V Y +R  LILSC   L  FP D  TC+  +ES  Y  + + + W  D   
Sbjct: 150 LLRIFKNGNVLYSIRLTLILSCPMDLKNFPMDIQTCTMQLESFGYTMNDLMFEWLEDAPA 209

Query: 120 LRKSPSLT 127
           ++ +  LT
Sbjct: 210 VQVAEGLT 217

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing). May play a role in the maturation of reproductive organs.

Mus musculus (taxid: 10090)

>sp|Q17328|GLUCB_CAEEL Glutamate-gated chloride channel subunit beta OS=Caenorhabditis elegans GN=glc-2 PE=1 SV=1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 4/142 (2%)

Query: 1   KYEVEFLLQQQWHDPRLEYFNQTTYD---FLNAIHHHSDVWLPDTYFIMHGDFKDPLIPV 57
           +Y ++   ++QW DPRL Y N   Y+   FL   H    +W+PDT+F         LI +
Sbjct: 77  EYSIQLTFREQWIDPRLAYENLGFYNPPAFLTVPHVKKSLWIPDTFFPTEKAAHRHLIDM 136

Query: 58  -HFALRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKND 116
            +  LRIY +G + Y  R  L  SC   L ++P D  +C+F + S ++  + I Y W   
Sbjct: 137 ENMFLRIYPDGKILYSSRISLTSSCPMRLQLYPLDYQSCNFDLVSYAHTMNDIMYEWDPS 196

Query: 117 EDTLRKSPSLTTLNAYLITNRT 138
                K    + L  +++ N T
Sbjct: 197 TPVQLKPGVGSDLPNFILKNYT 218

Glutamate gated chloride channel that is dual gated by glutamate and avermectin.

Caenorhabditis elegans (taxid: 6239)

>sp|Q8QZW7|GBRP_MOUSE Gamma-aminobutyric acid receptor subunit pi OS=Mus musculus GN=Gabrp PE=2 SV=1

 Score = 65.9 bits (159), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 3/126 (2%)

Query: 2   YEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSDVWLPDTYFI-MHGDFKDPLIPVHFA 60
           Y     L+Q+W DPRL +    ++     +     +W+PDTY +     F   +   +  
Sbjct: 82  YTATIYLRQRWTDPRLVFEGNKSFTLDARLVEF--LWVPDTYIVESKKSFLHEVTVGNRL 139

Query: 61  LRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTL 120
           +R++ NGTV Y +R    ++C   L  +P D  TC   +ES  Y+ + +E+ W    D++
Sbjct: 140 IRLFSNGTVLYALRITTTVTCNMDLSKYPMDTQTCKLQLESWGYDGNDVEFSWLRGNDSV 199

Query: 121 RKSPSL 126
           R   +L
Sbjct: 200 RGLENL 205

GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel. In the uterus, the function of the receptor appears to be related to tissue contractility. The binding of this pI subunit with other GABA(A) receptor subunits alters the sensitivity of recombinant receptors to modulatory agents such as pregnanolone.

Mus musculus (taxid: 10090)

>sp|Q94900|GLUCL_DROME Glutamate-gated chloride channel OS=Drosophila melanogaster GN=GluClalpha PE=1 SV=2

 Score = 65.9 bits (159), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 66/120 (55%), Gaps = 5/120 (4%)

Query: 1   KYEVEFLLQQQWHDPRLEYFN-QTTYDFLNAIHHHSDVWLPDTYFI--MHGDFKDPLIPV 57
           +Y V+   ++QW D RL++ + Q    +L  +   + VW+PD +F     G F + ++P 
Sbjct: 82  EYSVQLTFREQWTDERLKFDDIQGRLKYLT-LTEANRVWMPDLFFSNEKEGHFHNIIMP- 139

Query: 58  HFALRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDE 117
           +  +RI+ NG+V Y +R  L L+C  +L ++P D   CS  M S  +  + + ++WK  +
Sbjct: 140 NVYIRIFPNGSVLYSIRISLTLACPMNLKLYPLDRQICSLRMASYGWTTNDLVFLWKEGD 199

Glutamate gated chloride channel that is dual gated by glutamate and avermectin.

Drosophila melanogaster (taxid: 7227)

>sp|O09028|GBRP_RAT Gamma-aminobutyric acid receptor subunit pi OS=Rattus norvegicus GN=Gabrp PE=2 SV=1

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 3/126 (2%)

Query: 2   YEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSDVWLPDTYFI-MHGDFKDPLIPVHFA 60
           Y     L+Q+W DPRL +    ++     +     +W+PDTY +     F   +   +  
Sbjct: 82  YTATIYLRQRWTDPRLVFEGNKSFTLDARLVEF--LWVPDTYIVESKKSFLHEVTVGNRL 139

Query: 61  LRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTL 120
           +R++ NGTV Y +R    ++C   L  +P D  TC   +ES  Y+ + +E+ W    D++
Sbjct: 140 IRLFSNGTVLYALRITTTVTCNMDLSKYPMDTQTCKLQLESWGYDGNDVEFSWLRGNDSV 199

Query: 121 RKSPSL 126
           R   +L
Sbjct: 200 RGLENL 205

GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel. In the uterus, the function of the receptor appears to be related to tissue contractility. The binding of this pI subunit with other GABA(A) receptor subunits alters the sensitivity of recombinant receptors to modulatory agents such as pregnanolone.

Rattus norvegicus (taxid: 10116)

>sp|P26048|GBRA2_MOUSE Gamma-aminobutyric acid receptor subunit alpha-2 OS=Mus musculus GN=Gabra2 PE=1 SV=1

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 9/148 (6%)

Query: 1   KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSDVWLPDTYFIMHGDFK----DPLIP 56
           +Y ++   +Q+W D RL++        LN +   S +W PDT+F  H   K    +  +P
Sbjct: 86  EYTIDVFFRQKWKDERLKFKGPMNILRLNNLMA-SKIWTPDTFF--HNGKKSVAHNMTMP 142

Query: 57  VHFALRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWK-N 115
               LRI  +GT+ Y MR  +   C   L  FP D  +C     S +Y  S + Y+W  N
Sbjct: 143 NKL-LRIQDDGTLLYTMRLTVQAECPMHLEDFPMDAHSCPLKFGSYAYTTSEVTYIWTYN 201

Query: 116 DEDTLRKSPSLTTLNAYLITNRTISCPT 143
             D+++ +P  + LN Y +  ++I   T
Sbjct: 202 ASDSVQVAPDGSRLNQYDLLGQSIGKET 229

GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel.

Mus musculus (taxid: 10090)

>sp|Q5RCC5|GBRA2_PONAB Gamma-aminobutyric acid receptor subunit alpha-2 OS=Pongo abelii GN=GABRA2 PE=2 SV=2

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 9/148 (6%)

Query: 1   KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSDVWLPDTYFIMHGDFK----DPLIP 56
           +Y ++   +Q+W D RL++        LN +   S +W PDT+F  H   K    +  +P
Sbjct: 86  EYTIDVFFRQKWKDERLKFKGPMNILRLNNLMA-SKIWTPDTFF--HNGKKSVAHNMTMP 142

Query: 57  VHFALRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWK-N 115
               LRI  +GT+ Y MR  +   C   L  FP D  +C     S +Y  S + Y+W  N
Sbjct: 143 NKL-LRIQDDGTLLYTMRLTVQAECPMHLEDFPMDAHSCPLKFGSYAYTTSEVTYIWTYN 201

Query: 116 DEDTLRKSPSLTTLNAYLITNRTISCPT 143
             D+++ +P  + LN Y +  ++I   T
Sbjct: 202 ASDSVQVAPDGSRLNQYDLLGQSIGKET 229

GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel.

Pongo abelii (taxid: 9601)

>sp|P10063|GBRA2_BOVIN Gamma-aminobutyric acid receptor subunit alpha-2 OS=Bos taurus GN=GABRA2 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 9/148 (6%)

Query: 1   KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSDVWLPDTYFIMHGDFK----DPLIP 56
           +Y ++   +Q+W D RL++        LN +   S +W PDT+F  H   K    +  +P
Sbjct: 86  EYTIDVFFRQKWKDERLKFKGPMNILRLNNLMA-SKIWTPDTFF--HNGKKSVAHNMTMP 142

Query: 57  VHFALRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWK-N 115
               LRI  +GT+ Y MR  +   C   L  FP D  +C     S +Y  S + Y+W  N
Sbjct: 143 NKL-LRIQDDGTLLYTMRLTVQAECPMHLEDFPMDAHSCPLKFGSYAYTTSEVTYIWTYN 201

Query: 116 DEDTLRKSPSLTTLNAYLITNRTISCPT 143
             D+++ +P  + LN Y +  ++I   T
Sbjct: 202 ASDSVQVAPDGSRLNQYDLPGQSIGKET 229

GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel.

Bos taurus (taxid: 9913)

>sp|P47869|GBRA2_HUMAN Gamma-aminobutyric acid receptor subunit alpha-2 OS=Homo sapiens GN=GABRA2 PE=2 SV=2

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 9/148 (6%)

Query: 1   KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSDVWLPDTYFIMHGDFK----DPLIP 56
           +Y ++   +Q+W D RL++        LN +   S +W PDT+F  H   K    +  +P
Sbjct: 86  EYTIDVFFRQKWKDERLKFKGPMNILRLNNLMA-SKIWTPDTFF--HNGKKSVAHNMTMP 142

Query: 57  VHFALRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWK-N 115
               LRI  +GT+ Y MR  +   C   L  FP D  +C     S +Y  S + Y+W  N
Sbjct: 143 NKL-LRIQDDGTLLYTMRLTVQAECPMHLEDFPMDAHSCPLKFGSYAYTTSEVTYIWTYN 201

Query: 116 DEDTLRKSPSLTTLNAYLITNRTISCPT 143
             D+++ +P  + LN Y +  ++I   T
Sbjct: 202 ASDSVQVAPDGSRLNQYDLLGQSIGKET 229

GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
350535993	436	pH-sensitive chloride channel [Nasonia v	1.0	0.339	0.858	9e-74
118786723	453	AGAP005599-PA [Anopheles gambiae str. PE	1.0	0.326	0.844	5e-73
158294453	436	AGAP005599-PB [Anopheles gambiae str. PE	1.0	0.339	0.844	7e-73
307186514	245	Glutamate-gated chloride channel subunit	1.0	0.604	0.831	2e-72
340725377	460	PREDICTED: glutamate-gated chloride chan	1.0	0.321	0.837	5e-72
383861045	475	PREDICTED: glycine receptor subunit alph	1.0	0.311	0.837	6e-72
219842191	475	ligand-gated ion channel pHCl isoform 2	1.0	0.311	0.837	7e-72
340725373	475	PREDICTED: glutamate-gated chloride chan	1.0	0.311	0.837	8e-72
383861043	458	PREDICTED: glycine receptor subunit alph	1.0	0.323	0.837	9e-72
383861047	489	PREDICTED: glycine receptor subunit alph	1.0	0.302	0.837	1e-71

>gi|350535993|ref|NP_001234894.1| pH-sensitive chloride channel [Nasonia vitripennis] gi|269856281|gb|ACZ51423.1| pH-sensitive chloride channel [Nasonia vitripennis]

 Score =  281 bits (718), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 127/148 (85%), Positives = 139/148 (93%)

Query: 1   KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSDVWLPDTYFIMHGDFKDPLIPVHFA 60
           KYEVEFLLQQQW+DPRL Y N++ Y+FLNAIHHH+D+WLPDTYFIMHGDFKDPLIPVHFA
Sbjct: 106 KYEVEFLLQQQWYDPRLRYSNRSRYEFLNAIHHHNDIWLPDTYFIMHGDFKDPLIPVHFA 165

Query: 61  LRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTL 120
           LRIYRNGTVNYLMRRHLILSCQG L+IFPFDDP CSFA+ESISYEQ+AI YVWKNDEDTL
Sbjct: 166 LRIYRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIESISYEQTAITYVWKNDEDTL 225

Query: 121 RKSPSLTTLNAYLITNRTISCPTKTTWR 148
           RKSPSLTTLNAYLI N+TI+CP K +WR
Sbjct: 226 RKSPSLTTLNAYLIQNQTITCPIKASWR 253

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118786723|ref|XP_315611.3| AGAP005599-PA [Anopheles gambiae str. PEST] gi|116126458|gb|EAA11458.3| AGAP005599-PA [Anopheles gambiae str. PEST]

 Score =  278 bits (711), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 125/148 (84%), Positives = 137/148 (92%)

Query: 1   KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSDVWLPDTYFIMHGDFKDPLIPVHFA 60
           KYEVEFLLQQQW DPRL Y NQ+ Y++LNAIHHH D+WLPDTYFIMHGDFKDP+IP+HFA
Sbjct: 81  KYEVEFLLQQQWFDPRLRYANQSQYEYLNAIHHHEDIWLPDTYFIMHGDFKDPIIPMHFA 140

Query: 61  LRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTL 120
           LRIYRNGT+NYLMRRHLILSCQG L+IFPFDDP CSFA+ESISYEQSAI YVWKNDEDTL
Sbjct: 141 LRIYRNGTINYLMRRHLILSCQGRLNIFPFDDPLCSFALESISYEQSAITYVWKNDEDTL 200

Query: 121 RKSPSLTTLNAYLITNRTISCPTKTTWR 148
           RKSPSLTTLNAYLI N+TI+CP K +WR
Sbjct: 201 RKSPSLTTLNAYLIQNQTIACPIKASWR 228

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158294453|ref|XP_001688691.1| AGAP005599-PB [Anopheles gambiae str. PEST] gi|157015572|gb|EDO63697.1| AGAP005599-PB [Anopheles gambiae str. PEST]

 Score =  278 bits (710), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 125/148 (84%), Positives = 137/148 (92%)

Query: 1   KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSDVWLPDTYFIMHGDFKDPLIPVHFA 60
           KYEVEFLLQQQW DPRL Y NQ+ Y++LNAIHHH D+WLPDTYFIMHGDFKDP+IP+HFA
Sbjct: 81  KYEVEFLLQQQWFDPRLRYANQSQYEYLNAIHHHEDIWLPDTYFIMHGDFKDPIIPMHFA 140

Query: 61  LRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTL 120
           LRIYRNGT+NYLMRRHLILSCQG L+IFPFDDP CSFA+ESISYEQSAI YVWKNDEDTL
Sbjct: 141 LRIYRNGTINYLMRRHLILSCQGRLNIFPFDDPLCSFALESISYEQSAITYVWKNDEDTL 200

Query: 121 RKSPSLTTLNAYLITNRTISCPTKTTWR 148
           RKSPSLTTLNAYLI N+TI+CP K +WR
Sbjct: 201 RKSPSLTTLNAYLIQNQTIACPIKASWR 228

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307186514|gb|EFN72074.1| Glutamate-gated chloride channel subunit beta [Camponotus floridanus]

 Score =  276 bits (706), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 123/148 (83%), Positives = 138/148 (93%)

Query: 1   KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSDVWLPDTYFIMHGDFKDPLIPVHFA 60
           KYEVEFLLQQQW+DPRL Y N++ Y+FLNAIHH+ D+WLPDTYFIMHGDFKDP+IPVHFA
Sbjct: 96  KYEVEFLLQQQWYDPRLRYSNRSKYEFLNAIHHYEDIWLPDTYFIMHGDFKDPIIPVHFA 155

Query: 61  LRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTL 120
           LRIYRNGTVNYLMRRHLI+SCQGSL+IFPFDDP CSFA+ESISYEQ+AI YVWKNDE TL
Sbjct: 156 LRIYRNGTVNYLMRRHLIISCQGSLNIFPFDDPLCSFAIESISYEQTAITYVWKNDEGTL 215

Query: 121 RKSPSLTTLNAYLITNRTISCPTKTTWR 148
           RKSPSLT+LNAYLI N+TI+CP K +WR
Sbjct: 216 RKSPSLTSLNAYLIKNQTITCPIKVSWR 243

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725377|ref|XP_003401047.1| PREDICTED: glutamate-gated chloride channel-like isoform 3 [Bombus terrestris]

 Score =  275 bits (702), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 124/148 (83%), Positives = 137/148 (92%)

Query: 1   KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSDVWLPDTYFIMHGDFKDPLIPVHFA 60
           KYEVEFLLQQQW+DPRL Y N++ Y++LNAIHH+ D+WLPDTYFIMHGDFKDPLIPVHFA
Sbjct: 105 KYEVEFLLQQQWYDPRLRYSNRSQYEYLNAIHHYDDIWLPDTYFIMHGDFKDPLIPVHFA 164

Query: 61  LRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTL 120
           LRIYRNGTVNYLMRRHLILSCQG L+IFPFDDP CSFA+ESISYEQSAI YVWKNDE TL
Sbjct: 165 LRIYRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIESISYEQSAITYVWKNDEGTL 224

Query: 121 RKSPSLTTLNAYLITNRTISCPTKTTWR 148
           RKSPSLT+LNAYLI N+TI+CP K +WR
Sbjct: 225 RKSPSLTSLNAYLIKNQTITCPIKVSWR 252

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861045|ref|XP_003705997.1| PREDICTED: glycine receptor subunit alpha-4-like isoform 3 [Megachile rotundata]

 Score =  275 bits (702), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 124/148 (83%), Positives = 137/148 (92%)

Query: 1   KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSDVWLPDTYFIMHGDFKDPLIPVHFA 60
           KYEVEFLLQQQW+DPRL Y N++ Y+FLNAIHH+ D+WLPDTYFIMHGDFKDPLIPVHFA
Sbjct: 106 KYEVEFLLQQQWYDPRLRYSNRSQYEFLNAIHHYDDIWLPDTYFIMHGDFKDPLIPVHFA 165

Query: 61  LRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTL 120
           LRIYRNGTVNYLMRRHLILSCQG L+IFPFDDP CSFA+ESISYEQ+AI YVWKNDE TL
Sbjct: 166 LRIYRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIESISYEQTAITYVWKNDEGTL 225

Query: 121 RKSPSLTTLNAYLITNRTISCPTKTTWR 148
           RKSPSLT+LNAYLI N+TI+CP K +WR
Sbjct: 226 RKSPSLTSLNAYLIKNQTITCPIKVSWR 253

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|219842191|ref|NP_001137351.1| ligand-gated ion channel pHCl isoform 2 [Apis mellifera] gi|110555526|gb|ABG75743.1| pH-sensitive chloride channel variant 3 [Apis mellifera]

 Score =  274 bits (701), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 124/148 (83%), Positives = 137/148 (92%)

Query: 1   KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSDVWLPDTYFIMHGDFKDPLIPVHFA 60
           KYEVEFLLQQQW+DPRL Y N++ Y+FLNAIHH+ D+WLPDTYFIMHGDFKDPLIPVHFA
Sbjct: 106 KYEVEFLLQQQWYDPRLRYSNRSQYEFLNAIHHYDDIWLPDTYFIMHGDFKDPLIPVHFA 165

Query: 61  LRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTL 120
           LRIYRNGTVNYLMRRHLILSCQG L+IFPFDDP CSFA+ESISYEQ+AI YVWKNDE TL
Sbjct: 166 LRIYRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIESISYEQTAITYVWKNDEGTL 225

Query: 121 RKSPSLTTLNAYLITNRTISCPTKTTWR 148
           RKSPSLT+LNAYLI N+TI+CP K +WR
Sbjct: 226 RKSPSLTSLNAYLIKNQTITCPIKVSWR 253

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725373|ref|XP_003401045.1| PREDICTED: glutamate-gated chloride channel-like isoform 1 [Bombus terrestris]

 Score =  274 bits (701), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 124/148 (83%), Positives = 137/148 (92%)

Query: 1   KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSDVWLPDTYFIMHGDFKDPLIPVHFA 60
           KYEVEFLLQQQW+DPRL Y N++ Y++LNAIHH+ D+WLPDTYFIMHGDFKDPLIPVHFA
Sbjct: 106 KYEVEFLLQQQWYDPRLRYSNRSQYEYLNAIHHYDDIWLPDTYFIMHGDFKDPLIPVHFA 165

Query: 61  LRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTL 120
           LRIYRNGTVNYLMRRHLILSCQG L+IFPFDDP CSFA+ESISYEQSAI YVWKNDE TL
Sbjct: 166 LRIYRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIESISYEQSAITYVWKNDEGTL 225

Query: 121 RKSPSLTTLNAYLITNRTISCPTKTTWR 148
           RKSPSLT+LNAYLI N+TI+CP K +WR
Sbjct: 226 RKSPSLTSLNAYLIKNQTITCPIKVSWR 253

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861043|ref|XP_003705996.1| PREDICTED: glycine receptor subunit alpha-4-like isoform 2 [Megachile rotundata]

 Score =  274 bits (701), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 124/148 (83%), Positives = 137/148 (92%)

Query: 1   KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSDVWLPDTYFIMHGDFKDPLIPVHFA 60
           KYEVEFLLQQQW+DPRL Y N++ Y+FLNAIHH+ D+WLPDTYFIMHGDFKDPLIPVHFA
Sbjct: 106 KYEVEFLLQQQWYDPRLRYSNRSQYEFLNAIHHYDDIWLPDTYFIMHGDFKDPLIPVHFA 165

Query: 61  LRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTL 120
           LRIYRNGTVNYLMRRHLILSCQG L+IFPFDDP CSFA+ESISYEQ+AI YVWKNDE TL
Sbjct: 166 LRIYRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIESISYEQTAITYVWKNDEGTL 225

Query: 121 RKSPSLTTLNAYLITNRTISCPTKTTWR 148
           RKSPSLT+LNAYLI N+TI+CP K +WR
Sbjct: 226 RKSPSLTSLNAYLIKNQTITCPIKVSWR 253

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861047|ref|XP_003705998.1| PREDICTED: glycine receptor subunit alpha-4-like isoform 4 [Megachile rotundata]

 Score =  274 bits (700), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 124/148 (83%), Positives = 137/148 (92%)

Query: 1   KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSDVWLPDTYFIMHGDFKDPLIPVHFA 60
           KYEVEFLLQQQW+DPRL Y N++ Y+FLNAIHH+ D+WLPDTYFIMHGDFKDPLIPVHFA
Sbjct: 106 KYEVEFLLQQQWYDPRLRYSNRSQYEFLNAIHHYDDIWLPDTYFIMHGDFKDPLIPVHFA 165

Query: 61  LRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTL 120
           LRIYRNGTVNYLMRRHLILSCQG L+IFPFDDP CSFA+ESISYEQ+AI YVWKNDE TL
Sbjct: 166 LRIYRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIESISYEQTAITYVWKNDEGTL 225

Query: 121 RKSPSLTTLNAYLITNRTISCPTKTTWR 148
           RKSPSLT+LNAYLI N+TI+CP K +WR
Sbjct: 226 RKSPSLTSLNAYLIKNQTITCPIKVSWR 253

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
FB|FBgn0264908	779	pHCl [Drosophila melanogaster	0.993	0.188	0.777	4.1e-65
UNIPROTKB|Q5JXX5	417	GLRA4 "Glycine receptor subuni	0.952	0.338	0.335	5.7e-15
WB|WBGene00001593	484	glc-3 [Caenorhabditis elegans	0.972	0.297	0.302	4.7e-14
WB|WBGene00000233	657	avr-15 [Caenorhabditis elegans	0.972	0.219	0.288	5.1e-14
UNIPROTKB|F1NEM1	453	GLRA4 "Uncharacterized protein	0.952	0.311	0.321	6.7e-14
MGI|MGI:95750	456	Glra4 "glycine receptor, alpha	0.952	0.309	0.328	8.8e-14
RGD|1564103	456	Glra4 "glycine receptor, alpha	0.952	0.309	0.328	8.8e-14
UNIPROTKB|E1BHI1	457	GLRA4 "Uncharacterized protein	0.952	0.308	0.328	8.8e-14
UNIPROTKB|E2RCM7	457	GLRA4 "Uncharacterized protein	0.952	0.308	0.328	8.8e-14
UNIPROTKB|F1RYC5	457	LOC100525376 "Uncharacterized	0.952	0.308	0.328	8.8e-14

FB|FBgn0264908 pHCl [Drosophila melanogaster (taxid:7227)]

 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 115/148 (77%), Positives = 133/148 (89%)

Query:     1 KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSDVWLPDTYFIMHGDFKDPLIPVHFA 60
             KYEVEFLL QQW+DPRL+Y N++ YDFLNA+HHH  +W PDTYFIMHGDFKDP+IP+HFA
Sbjct:   407 KYEVEFLLNQQWNDPRLQYGNKSHYDFLNALHHHDSIWTPDTYFIMHGDFKDPIIPMHFA 466

Query:    61 LRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTL 120
             LRI+RNGT+ Y MRRHLILSCQGSLHIFPFDDP CSF+MESISYE++ I+YVWKNDEDTL
Sbjct:   467 LRIFRNGTITYAMRRHLILSCQGSLHIFPFDDPKCSFSMESISYEEAQIKYVWKNDEDTL 526

Query:   121 RKSPSLTTLNAYLITNRTISCPTKTTWR 148
             RKSPSLTTLNAYLI N+T +C  + +WR
Sbjct:   527 RKSPSLTTLNAYLIKNQTTACD-QNSWR 553

GO:0016934 "extracellular-glycine-gated chloride channel activity" evidence=ISS

GO:0016935 "glycine-gated chloride channel complex" evidence=ISS

GO:0006811 "ion transport" evidence=IEA

GO:0005254 "chloride channel activity" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|Q5JXX5 GLRA4 "Glycine receptor subunit alpha-4" [Homo sapiens (taxid:9606)]

 Score = 196 (74.1 bits), Expect = 5.7e-15, P = 5.7e-15
 Identities = 49/146 (33%), Positives = 71/146 (48%)

Query:     2 YEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSD-VWLPDTYFIMH--GDFKDPLIPVH 58
             Y V   L+QQW+DPRL Y  +   D L+      D +W PD +F      +F + +   +
Sbjct:    92 YRVNVFLRQQWNDPRLSY-REYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHE-VTTDN 149

Query:    59 FALRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDED 118
               LRI++NG V Y +R  LILSC   L  FP D  TC+  +ES  Y    + + W  D  
Sbjct:   150 KLLRIFKNGNVLYSIRLTLILSCLMDLKNFPMDIQTCTMQLESFGYTMKDLVFEWLEDAP 209

Query:   119 TLRKSPSLTTLNAYLITNRTISCPTK 144
              ++ +  LT     L   + + C TK
Sbjct:   210 AVQVAEGLTLPQFILRDEKDLGCCTK 235

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0005254 "chloride channel activity" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0034707 "chloride channel complex" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

WB|WBGene00001593 glc-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 189 (71.6 bits), Expect = 4.7e-14, P = 4.7e-14
 Identities = 45/149 (30%), Positives = 77/149 (51%)

Query:     1 KYEVEFLLQQQWHDPRLEY-F-NQTTYDFLNAIHHHSDVWLPDTYFIMHGD-FKDPLIPV 57
             +Y V+   +++W D RL Y F   +T DFL  +     +W+PD++F       K  +   
Sbjct:    79 EYSVQLTFREEWVDGRLAYGFPGDSTPDFL-ILTAGQQIWMPDSFFQNEKQAHKHDIDKP 137

Query:    58 HFALRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDE 117
             +  +RI+R+G + Y +R  ++LSC   L  +P D  TC   + S +Y ++ IEY WK  +
Sbjct:   138 NVLIRIHRDGRILYSVRISMVLSCPMHLQYYPMDVQTCLIDLASYAYTENDIEYRWKKTD 197

Query:   118 DTLRKSPSLTTLNAYLITN-RTISCPTKT 145
                 K    ++L ++ + N  T  C +KT
Sbjct:   198 PVQLKKGLHSSLPSFELNNVDTTLCTSKT 226

GO:0006811 "ion transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP

WB|WBGene00000233 avr-15 [Caenorhabditis elegans (taxid:6239)]

 Score = 191 (72.3 bits), Expect = 5.1e-14, P = 5.1e-14
 Identities = 43/149 (28%), Positives = 76/149 (51%)

Query:     1 KYEVEFLLQQQWHDPRLEYF--NQTTYDFLNAIHHHSDVWLPDTYFIMHGD-FKDPLIPV 57
             +Y V+   ++ W D RL +        DFL  +    ++W+PD++F      +K  +   
Sbjct:   301 EYSVQLTFRESWVDKRLSFGVKGDAQPDFL-ILTAGQEIWMPDSFFQNEKQAYKHMIDKP 359

Query:    58 HFALRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDE 117
             +  +R++++GT+ Y +R  L+LSC   L  +P D   C   + S +Y    IEYVWK + 
Sbjct:   360 NVLIRVHKDGTILYSVRISLVLSCPMHLQYYPMDVQQCFIDLASYAYTTKDIEYVWKEET 419

Query:   118 DTLRKSPSLTTLNAYLITNR-TISCPTKT 145
                 K+   ++L ++ +TN  T  C +KT
Sbjct:   420 PVQLKAGLSSSLPSFQLTNTSTTYCTSKT 448

GO:0006811 "ion transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0043051 "regulation of pharyngeal pumping" evidence=IGI;IMP

GO:0001508 "regulation of action potential" evidence=IMP

GO:0031987 "locomotion involved in locomotory behavior" evidence=IGI;IMP

UNIPROTKB|F1NEM1 GLRA4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 187 (70.9 bits), Expect = 6.7e-14, P = 6.7e-14
 Identities = 47/146 (32%), Positives = 73/146 (50%)

Query:     2 YEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSD-VWLPDTYFIMH--GDFKDPLIPVH 58
             Y V   L+QQW+DPRL Y  +   D L+      D +W PD +F      +F + +   +
Sbjct:    89 YRVNVFLRQQWNDPRLAY-REYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHE-VTTDN 146

Query:    59 FALRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDED 118
               LRI++NG V Y +R  LILSC   L  FP D  TC+  +ES  Y  + + + W  +++
Sbjct:   147 KLLRIFKNGNVLYSIRLTLILSCPMDLKNFPMDIQTCTMQLESFGYTMNDLIFEWLEEQE 206

Query:   119 TLRKSPSLTTLNAYLITNRTISCPTK 144
              ++ +  LT     L   + +   TK
Sbjct:   207 AVQVAEGLTLPQFILRDEKDLGYCTK 232

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

MGI|MGI:95750 Glra4 "glycine receptor, alpha 4 subunit" [Mus musculus (taxid:10090)]

 Score = 186 (70.5 bits), Expect = 8.8e-14, P = 8.8e-14
 Identities = 48/146 (32%), Positives = 71/146 (48%)

Query:     2 YEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSD-VWLPDTYFIMH--GDFKDPLIPVH 58
             Y V   L+QQW+DPRL Y  +   D L+      D +W PD +F      +F + +   +
Sbjct:    91 YRVNVFLRQQWNDPRLAY-REYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHE-VTTDN 148

Query:    59 FALRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDED 118
               LRI++NG V Y +R  LILSC   L  FP D  TC+  +ES  Y  + + + W  D  
Sbjct:   149 KLLRIFKNGNVLYSIRLTLILSCPMDLKNFPMDIQTCTMQLESFGYTMNDLMFEWLEDAP 208

Query:   119 TLRKSPSLTTLNAYLITNRTISCPTK 144
              ++ +  LT     L   + +   TK
Sbjct:   209 AVQVAEGLTLPQFILRDEKDLGYCTK 234

GO:0005216 "ion channel activity" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0005254 "chloride channel activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006821 "chloride transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0034707 "chloride channel complex" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

RGD|1564103 Glra4 "glycine receptor, alpha 4" [Rattus norvegicus (taxid:10116)]

 Score = 186 (70.5 bits), Expect = 8.8e-14, P = 8.8e-14
 Identities = 48/146 (32%), Positives = 71/146 (48%)

Query:     2 YEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSD-VWLPDTYFIMH--GDFKDPLIPVH 58
             Y V   L+QQW+DPRL Y  +   D L+      D +W PD +F      +F + +   +
Sbjct:    91 YRVNVFLRQQWNDPRLAY-REYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHE-VTTDN 148

Query:    59 FALRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDED 118
               LRI++NG V Y +R  LILSC   L  FP D  TC+  +ES  Y  + + + W  D  
Sbjct:   149 KLLRIFKNGNVLYSIRLTLILSCPMDLKNFPMDIQTCTMQLESFGYTMNDLMFEWLEDAP 208

Query:   119 TLRKSPSLTTLNAYLITNRTISCPTK 144
              ++ +  LT     L   + +   TK
Sbjct:   209 AVQVAEGLTLPQFILRDEKDLGYCTK 234

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

UNIPROTKB|E1BHI1 GLRA4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 186 (70.5 bits), Expect = 8.8e-14, P = 8.8e-14
 Identities = 48/146 (32%), Positives = 71/146 (48%)

Query:     2 YEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSD-VWLPDTYFIMH--GDFKDPLIPVH 58
             Y V   L+QQW+DPRL Y  +   D L+      D +W PD +F      +F + +   +
Sbjct:    92 YRVNVFLRQQWNDPRLAY-REYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHE-VTTDN 149

Query:    59 FALRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDED 118
               LRI++NG V Y +R  LILSC   L  FP D  TC+  +ES  Y  + + + W  D  
Sbjct:   150 KLLRIFKNGNVLYSIRLTLILSCPMDLKNFPMDIQTCTMQLESFGYTMNDLMFEWLEDAP 209

Query:   119 TLRKSPSLTTLNAYLITNRTISCPTK 144
              ++ +  LT     L   + +   TK
Sbjct:   210 AVQVAEGLTLPQFILRDEKDLGYCTK 235

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

UNIPROTKB|E2RCM7 GLRA4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 186 (70.5 bits), Expect = 8.8e-14, P = 8.8e-14
 Identities = 48/146 (32%), Positives = 71/146 (48%)

Query:     2 YEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSD-VWLPDTYFIMH--GDFKDPLIPVH 58
             Y V   L+QQW+DPRL Y  +   D L+      D +W PD +F      +F + +   +
Sbjct:    92 YRVNVFLRQQWNDPRLAY-QEYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHE-VTTDN 149

Query:    59 FALRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDED 118
               LRI++NG V Y +R  LILSC   L  FP D  TC+  +ES  Y  + + + W  D  
Sbjct:   150 KLLRIFKNGNVLYSIRLTLILSCPMDLKNFPMDIQTCTMQLESFGYTMNDLVFEWLEDAP 209

Query:   119 TLRKSPSLTTLNAYLITNRTISCPTK 144
              ++ +  LT     L   + +   TK
Sbjct:   210 AVQVAEGLTLPQFILRDEKDLGYCTK 235

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

UNIPROTKB|F1RYC5 LOC100525376 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 186 (70.5 bits), Expect = 8.8e-14, P = 8.8e-14
 Identities = 48/146 (32%), Positives = 71/146 (48%)

Query:     2 YEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSD-VWLPDTYFIMH--GDFKDPLIPVH 58
             Y V   L+QQW+DPRL Y  +   D L+      D +W PD +F      +F + +   +
Sbjct:    92 YRVNVFLRQQWNDPRLAY-REYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHE-VTTDN 149

Query:    59 FALRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDED 118
               LRI++NG V Y +R  LILSC   L  FP D  TC+  +ES  Y  + + + W  D  
Sbjct:   150 KLLRIFKNGNVLYSIRLTLILSCPMDLKNFPMDIQTCTMQLESFGYTMNDLVFEWLEDAP 209

Query:   119 TLRKSPSLTTLNAYLITNRTISCPTK 144
              ++ +  LT     L   + +   TK
Sbjct:   210 AVQVAEGLTLPQFILRDEKDLGYCTK 235

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	148
TIGR00860	459	TIGR00860, LIC, Cation transporter family protein	2e-20
pfam02931	215	pfam02931, Neur_chan_LBD, Neurotransmitter-gated i	9e-20

>gnl|CDD|233155 TIGR00860, LIC, Cation transporter family protein

 Score = 85.9 bits (213), Expect = 2e-20
 Identities = 46/150 (30%), Positives = 64/150 (42%), Gaps = 9/150 (6%)

Query: 2   YEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSD-VWLPDTYFIMHGD-FKDPLIPVHF 59
           Y     L+Q+W D RL++ N   Y  +  +    D +W+PD +F    D     +   + 
Sbjct: 76  YTTNIWLRQEWTDERLQW-NPEEYPGVTLVRTPDDSIWVPDIFFYNEKDARFHGITMTNV 134

Query: 60  ALRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDE-- 117
            +RI+ NG+V Y  R  L L+C   L  FPFD   CS   ES  Y  + I+  WK     
Sbjct: 135 LVRIHPNGSVLYSPRITLTLACPMDLRNFPFDVQNCSLKFESWGYTTNDIKLEWKEQGAV 194

Query: 118 ---DTLRKS-PSLTTLNAYLITNRTISCPT 143
              D+L  S P    L  Y     T    T
Sbjct: 195 QVDDSLFISLPEFELLGVYGTRYCTSETNT 224

The Ligand-gated Ion Channel (LIC) Family of Neurotransmitter Receptors TC 1.A.9)Members of the LIC family of ionotropic neurotransmitter receptors are found only in vertebrate and invertebrate animals. They exhibit receptor specificity for (1)acetylcholine, (2) serotonin, (3) glycine, (4) glutamate and (5) g-aminobutyric acid (GABA). All of these receptor channels are probably hetero- orhomopentameric. The best characterized are the nicotinic acetyl-choline receptors which are pentameric channels of a2bgd subunit composition. All subunits arehomologous. The three dimensional structures of the protein complex in both the open and closed configurations have been solved at 0.9 nm resolution.The channel protein complexes of the LIC family preferentially transport cations or anions depending on the channel (e.g., the acetylcholine receptors are cationselective while glycine receptors are anion selective) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 459

>gnl|CDD|217293 pfam02931, Neur_chan_LBD, Neurotransmitter-gated ion-channel ligand binding domain

 Score = 81.1 bits (201), Expect = 9e-20
 Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 6/121 (4%)

Query: 2   YEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSD-VWLPDTYFI--MHGDFKDPLIPVH 58
                 L+QQW D RL  ++   Y  + ++   SD +W PD        G         +
Sbjct: 47  LTTNVWLRQQWTDERL-AWDPEDYGGITSLRLPSDKIWKPDIVLYNKADGIHDITTPNTN 105

Query: 59  FALRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDED 118
             +R+Y +GTV +        SC   L  FPFD   CS    S +Y    ++  WK+D  
Sbjct: 106 --VRVYPDGTVLWSPPAIYKSSCPMDLTYFPFDQQNCSLKFGSWTYNGEEVDLRWKDDTP 163

Query: 119 T 119
            
Sbjct: 164 P 164

This family is the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. Length = 215

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	148
KOG3643|consensus	459		100.0
KOG3644|consensus	457		99.97
TIGR00860	459	LIC Cation transporter family protein. selective w	99.97
PF02931	217	Neur_chan_LBD: Neurotransmitter-gated ion-channel	99.97
KOG3642|consensus	466		99.96
KOG3645|consensus	449		99.95
KOG3646|consensus	486		99.94

>KOG3643|consensus

Probab=100.00  E-value=1e-36  Score=239.07  Aligned_cols=134  Identities=28%  Similarity=0.645  Sum_probs=119.2

Q ss_pred             CeEEEEEEEcEEECCCCccCCCCCCCCcceeee----cceeecCCeEEeeccc-ccCCCcccceEEEEeeCCEEEEecce
Q psy6970           1 KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHH----HSDVWLPDTYFIMHGD-FKDPLIPVHFALRIYRNGTVNYLMRR   75 (148)
Q Consensus         1 ~ft~~~~l~~~W~D~rL~w~~p~~~~~i~~~~~----~~~iW~Pdi~~~n~~~-~~~~~~~~~~~~~i~~~G~V~~~~~~   75 (148)
                      |||+++|++|.|+||||+| +   .+++..+.+    .++||+||.+|.|++. +-...+..+..++|++||+|.+..|+
T Consensus        79 DyTlt~y~rq~W~D~RLay-~---~~~~~slTl~~~~~~~LWvPDTff~N~KkSf~H~~T~~N~~lRl~~dGtVlys~Rl  154 (459)
T KOG3643|consen   79 DYTLTMYLRQTWRDPRLAY-S---SKNIDSLTLDVRYVDKLWVPDTFFPNSKKSFFHDVTTHNSLLRLHPDGTVLYSIRL  154 (459)
T ss_pred             hhhhhhhhhhhhcCccccc-C---CCCCceEEEchhhhhccccCceecccCcccccceeeecceEEEEcCCCeEEEEEEE
Confidence            6999999999999999999 4   344555544    4899999999999754 33333455889999999999999999


Q ss_pred             eEEEEccccccccCCCCCeeEEEEEcccccCCcEEEEEecCCCceeecCCccccccceecceEE
Q psy6970          76 HLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKSPSLTTLNAYLITNRTI  139 (148)
Q Consensus        76 ~~~~~C~~~l~~fPfD~q~C~l~~~S~~y~~~~v~l~~~~~~~~v~~~~~~~~l~~~~~~~~~~  139 (148)
                      +.++.|+|||++||+|+|+|+|.++||+|+.+||++.|..++.+|...+.+ +||||.++++.+
T Consensus       155 T~Ta~C~MDL~~fPmD~Q~C~LeiESYGYt~~DI~y~W~~g~~av~~~e~i-~LpqFti~~~~~  217 (459)
T KOG3643|consen  155 TVTAACPMDLKLFPMDSQNCKLEIESYGYTTDDIEYYWSKGDNAVKGDEKI-ELPQFTITEYHV  217 (459)
T ss_pred             EEEEecccccccCCCcccceeEEEEecccccccEEEEEcCCCccccceeee-eccceEEEEEEE
Confidence            999999999999999999999999999999999999999999999999987 899999999975

>KOG3644|consensus

Probab=99.97  E-value=1.3e-31  Score=215.82  Aligned_cols=138  Identities=28%  Similarity=0.598  Sum_probs=117.5

Q ss_pred             CeEEEEEEEcEEECCCCccCC-CC-CCCCcceeeec--ceeecCCeEEeeccc--ccCCCcccceEEEEeeCCEEEEecc
Q psy6970           1 KYEVEFLLQQQWHDPRLEYFN-QT-TYDFLNAIHHH--SDVWLPDTYFIMHGD--FKDPLIPVHFALRIYRNGTVNYLMR   74 (148)
Q Consensus         1 ~ft~~~~l~~~W~D~rL~w~~-p~-~~~~i~~~~~~--~~iW~Pdi~~~n~~~--~~~~~~~~~~~~~i~~~G~V~~~~~   74 (148)
                      +|+++++++|+|.||||++ + .+ ++.......+.  ++||.||++|.|++.  ++.... .+..+.|++||+|.+..|
T Consensus        86 df~~di~~~~~W~DpRL~~-~~~~~~~~~~~~~~l~~~~~iW~Pd~~F~NsK~a~~H~~~~-~N~ll~I~pnGtV~~~~R  163 (457)
T KOG3644|consen   86 DFEVDIYFRERWQDPRLAY-NALKFDHILPCKLNLSLKQKIWTPDTFFANSKSAEFHKSTK-PNVLLMIFPNGTVWYSYR  163 (457)
T ss_pred             eEEeeeeeeeeEeCccccc-cccCcccccccccccccCCceecCceeeecccceeeecCCC-CceEEEEecCCeEEEEEE
Confidence            6999999999999999999 5 33 33333333343  459999999999764  554443 488999999999999999


Q ss_pred             eeEEEEccccccccCCCCCeeEEEEEcccccCCcEEEEEecCCCceeecCCccccccceecceEE-eee
Q psy6970          75 RHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKSPSLTTLNAYLITNRTI-SCP  142 (148)
Q Consensus        75 ~~~~~~C~~~l~~fPfD~q~C~l~~~S~~y~~~~v~l~~~~~~~~v~~~~~~~~l~~~~~~~~~~-~~~  142 (148)
                      +.++.+|+|+|.+||+|+|+|.+.++||+|+.+||+++|.+.+ +|+..+++ .||||.+.+.+. .|.
T Consensus       164 i~l~~~C~m~L~~fP~D~Q~C~l~~eSy~Yn~~~v~~~W~~~~-pv~~~~~i-~LPdf~l~~~~~~~~~  230 (457)
T KOG3644|consen  164 ISLTLPCNMDLSKFPMDSQECKLQLESYAYNTDDVRLEWKEWN-PVQVKKDI-KLPDFSLPSFSTEKCT  230 (457)
T ss_pred             EEEeeceeeehhhCCCccceeeEEEEEeccccceEEEEecCCC-CcccccCc-cCCceeccceeecccc
Confidence            9999999999999999999999999999999999999998765 99999998 899999999964 443

>TIGR00860 LIC Cation transporter family protein

Probab=99.97  E-value=1.7e-31  Score=217.14  Aligned_cols=135  Identities=29%  Similarity=0.578  Sum_probs=113.1

Q ss_pred             CeEEEEEEEcEEECCCCccCCCCCCCCcceeee-cceeecCCeEEeecccccCC-CcccceEEEEeeCCEEEEecceeEE
Q psy6970           1 KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHH-HSDVWLPDTYFIMHGDFKDP-LIPVHFALRIYRNGTVNYLMRRHLI   78 (148)
Q Consensus         1 ~ft~~~~l~~~W~D~rL~w~~p~~~~~i~~~~~-~~~iW~Pdi~~~n~~~~~~~-~~~~~~~~~i~~~G~V~~~~~~~~~   78 (148)
                      +|++++|++|+|+|+||+| ||++|++++.+++ .++||+||++++|+++.... ....+..+++++||+|.|.++...+
T Consensus        75 ~~t~~~wl~~~W~D~rL~W-np~~y~~i~~i~~~~~~IW~PDi~l~N~~~~~~~~~~~~~~~v~~~~~G~V~~~~~~~~~  153 (459)
T TIGR00860        75 DYTTNIWLRQEWTDERLQW-NPEEYPGVTLVRTPDDSIWVPDIFFYNEKDARFHGITMTNVLVRIHPNGSVLYSPRITLT  153 (459)
T ss_pred             eEEEeeeeeeEEeCCccCC-CCccCCCceeccccccccccCcEEeecCccccccccccCceEEEEcCCCcEEEecCceEE
Confidence            4899999999999999999 9999999999888 58999999999997653322 2223556677779999999999999


Q ss_pred             EEccccccccCCCCCeeEEEEEcccccCCcEEEEEecCCCceeecCC-ccccccceecce
Q psy6970          79 LSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKSPS-LTTLNAYLITNR  137 (148)
Q Consensus        79 ~~C~~~l~~fPfD~q~C~l~~~S~~y~~~~v~l~~~~~~~~v~~~~~-~~~l~~~~~~~~  137 (148)
                      +.|+||+++||||+|+|.|+|+||+|+.+++++.|.++ ..+..+.+ ....++|.+.+.
T Consensus       154 ~~C~~d~~~FPfD~Q~C~l~fgSw~y~~~~i~l~~~~~-~~v~~~~~~~~~~~eW~l~~~  212 (459)
T TIGR00860       154 LACPMDLRNFPFDVQNCSLKFESWGYTTNDIKLEWKEQ-GAVQVDDSLFISLPEFELLGV  212 (459)
T ss_pred             ecccceeccCCCCCccccEEEhhhccccceEEEEECCC-CceEechhhccccCceEEEee
Confidence            99999999999999999999999999999999999765 34444332 125789998874

selective while glycine receptors are anion selective).

>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]

Probab=99.97  E-value=3.3e-31  Score=195.90  Aligned_cols=116  Identities=32%  Similarity=0.647  Sum_probs=98.3

Q ss_pred             CeEEEEEEEcEEECCCCccCCCCCCCCcceeee-cceeecCCeEEeecccccCCCcccceEEEEeeCCEEEEecceeEEE
Q psy6970           1 KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHH-HSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLIL   79 (148)
Q Consensus         1 ~ft~~~~l~~~W~D~rL~w~~p~~~~~i~~~~~-~~~iW~Pdi~~~n~~~~~~~~~~~~~~~~i~~~G~V~~~~~~~~~~   79 (148)
                      +|++++++.++|.|+||+| +|++|+++..+.+ .++||+|++++.|..............+.|+++|+|.+..++.+++
T Consensus        46 ~~~~~~~~~~~W~D~rL~w-~~~~~~~i~~~~v~~~~iW~P~l~~~n~~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~  124 (217)
T PF02931_consen   46 TFTVDGFIRLSWKDPRLKW-NPSDYGGIESIRVPSSQIWTPDLYFYNSVSGSFEITEPNSNVRVYSDGTVRYSPRFTLTF  124 (217)
T ss_dssp             EEEEEEEEEEEEEECCGE--STTTTTTESEEEEEGGGS----EEETTBSSSEEECS-SSEEEEEETTSEEEEEEEEEEEE
T ss_pred             hhhhhhhhceecccccccc-ChhhccCcccccccccceEecccccccccccceecccccccccccccchheeeecccccc
Confidence            3789999999999999999 9999999999988 5899999999999544332222235799999999999999999999


Q ss_pred             EccccccccCCCCCeeEEEEEcccccCCcEEEEEecCC
Q psy6970          80 SCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDE  117 (148)
Q Consensus        80 ~C~~~l~~fPfD~q~C~l~~~S~~y~~~~v~l~~~~~~  117 (148)
                      .|+|++.+||||+|.|.|.|+|+.|+.++|.+.+....
T Consensus       125 ~C~~d~~~fPfD~q~C~i~~~s~~~~~~~v~l~~~~~~  162 (217)
T PF02931_consen  125 SCPMDLRDFPFDSQNCSIKFGSWSYNSEEVQLKWENKN  162 (217)
T ss_dssp             EECETTTSSSSSEEEEEEEEEESSSSTTTEEEEESCSS
T ss_pred             cccccccccccccceeEEEEecccccccceeeeecccC
Confidence            99999999999999999999999999999999998743

Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This entry presents the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. ; GO: 0005230 extracellular ligand-gated ion channel activity, 0006810 transport, 0016020 membrane; PDB: 1LXH_B 1ABT_B 1TOS_A 1LXG_B 1IDG_B 1TOR_A 1IDH_B 3IGQ_B 3TLU_B 3UU5_A ....

>KOG3642|consensus

Probab=99.96  E-value=8e-29  Score=195.66  Aligned_cols=139  Identities=26%  Similarity=0.522  Sum_probs=117.0

Q ss_pred             CeEEEEEEEcEEECCCCccCCCCCCCCccee-eecceeecCCeEEeeccccc-CCCcccceEEEEeeCCEEEEecceeEE
Q psy6970           1 KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAI-HHHSDVWLPDTYFIMHGDFK-DPLIPVHFALRIYRNGTVNYLMRRHLI   78 (148)
Q Consensus         1 ~ft~~~~l~~~W~D~rL~w~~p~~~~~i~~~-~~~~~iW~Pdi~~~n~~~~~-~~~~~~~~~~~i~~~G~V~~~~~~~~~   78 (148)
                      ||+++++++|.|.|+||++ +.. ...+.-. .+..+||+||.+|.|+++.. +..+..+..++|..||+|.|..|++..
T Consensus        88 eytid~~FrQ~W~D~RL~f-~~~-~~~L~Ln~~m~~kiW~PDTfF~NgkkS~~H~iT~pN~l~Ri~~dG~vlyt~RlTi~  165 (466)
T KOG3642|consen   88 EYTIDCFFRQTWVDDRLKF-NGP-QEALPLNSLMLSKIWIPDTFFRNGKKSYAHNITTPNKLVRIYIDGTVLYTMRLTIP  165 (466)
T ss_pred             eEEEEEEEEEeehhhhhcc-cCc-chhhccchhhhcCcccCCcccccCcccceeeccCCCceEEEeECCcceEEEEEeec
Confidence            7999999999999999999 522 1222211 12589999999999976533 334455889999999999999999999


Q ss_pred             EEccccccccCCCCCeeEEEEEcccccCCcEEEEEecCCCceeecCCcc-ccccceecceEEeeee
Q psy6970          79 LSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKSPSLT-TLNAYLITNRTISCPT  143 (148)
Q Consensus        79 ~~C~~~l~~fPfD~q~C~l~~~S~~y~~~~v~l~~~~~~~~v~~~~~~~-~l~~~~~~~~~~~~~~  143 (148)
                      +.|+|++.+||+|.|.|.+.|+|++|+.+|+.+.|+.+  +|+++++.+ +|+||++.|.+++.+.
T Consensus       166 A~C~m~l~~fPMD~haCpl~fgSy~Y~~~evvY~W~~~--~VeV~~~~~~~L~Qf~l~g~~~~te~  229 (466)
T KOG3642|consen  166 AECPMHLARFPMDSHACPLKFGSYAYPGSEVVYKWKKR--SVEVNETDSWSLDQFDLLGVSVGTED  229 (466)
T ss_pred             ccCcchhhcCCCCcccCcceecccCcCCCCEEEEEecc--cEEEcCCCCccccceeeecccccccc
Confidence            99999999999999999999999999999999999986  888887765 8999999999875443

>KOG3645|consensus

Probab=99.95  E-value=1.2e-27  Score=194.03  Aligned_cols=135  Identities=21%  Similarity=0.348  Sum_probs=105.8

Q ss_pred             eEEEEEEEcEEECCCCccCCCCCCCCcceeee-cceeecCCeEEeecccccCCCcccceEEEEeeCCEEEEecceeEEEE
Q psy6970           2 YEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHH-HSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLILS   80 (148)
Q Consensus         2 ft~~~~l~~~W~D~rL~w~~p~~~~~i~~~~~-~~~iW~Pdi~~~n~~~~~~~~~~~~~~~~i~~~G~V~~~~~~~~~~~   80 (148)
                      -++++|+.++|+|+||+| ||++|+||+.+++ .++||+||++++|++...... .....+.+.++|+|.+.+++..+++
T Consensus        76 ~t~~~wl~~~W~D~~L~W-np~~~~~I~~i~vp~~~IW~Pdi~l~N~~~~~~~~-~~~~~v~v~~~G~V~~~~p~i~~s~  153 (449)
T KOG3645|consen   76 MTTNVWLKQSWTDERLSW-DPSDYGGITKIRVPSSKIWLPDIVLYNNADGDFEV-EDLTNVLVTYTGEVLWYPPAIYKSS  153 (449)
T ss_pred             EEEEEEeeeEEeccCccc-ChHHcCCceEEEecHHHcCcCcEEEEecccccccc-cccceEEEEECCEEEEEcceEEEee
Confidence            478999999999999999 9999999999999 589999999999954333222 2344699999999999999999999


Q ss_pred             ccccccccCCCCCeeEEEEEcccccCCcEE-EEEecCCCceeecCCccccccceecceEE
Q psy6970          81 CQGSLHIFPFDDPTCSFAMESISYEQSAIE-YVWKNDEDTLRKSPSLTTLNAYLITNRTI  139 (148)
Q Consensus        81 C~~~l~~fPfD~q~C~l~~~S~~y~~~~v~-l~~~~~~~~v~~~~~~~~l~~~~~~~~~~  139 (148)
                      |++|+++||||.|+|.++|+||+|+.+++. +........+....- .+-.+|.+.+.+.
T Consensus       154 C~idv~~FPfD~Q~C~i~f~sw~~~~~~i~~~~~~~~~~~~~~~~~-~~n~eW~l~~~~~  212 (449)
T KOG3645|consen  154 CPIDVTYFPFDVQNCSIKFGSWTYDGSEVDGLDLNAQTIEVDLSDF-IENSEWELLSVTV  212 (449)
T ss_pred             cccccccCCCcceeEeEEEeccccCccccceeeeccccccCCHHHc-CCCCcEEEEeeee
Confidence            999999999999999999999999999876 443322111222221 2445566555543

>KOG3646|consensus

Probab=99.94  E-value=5.7e-28  Score=190.77  Aligned_cols=115  Identities=23%  Similarity=0.457  Sum_probs=102.5

Q ss_pred             EEEEEEEcEEECCCCccCCCCCCCCcceeee-cceeecCCeEEeecccccCCCcccceEEEEeeCCEEEEecceeEEEEc
Q psy6970           3 EVEFLLQQQWHDPRLEYFNQTTYDFLNAIHH-HSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLILSC   81 (148)
Q Consensus         3 t~~~~l~~~W~D~rL~w~~p~~~~~i~~~~~-~~~iW~Pdi~~~n~~~~~~~~~~~~~~~~i~~~G~V~~~~~~~~~~~C   81 (148)
                      ++++|++.+|+|.+|+| ||++|+||+.++. .++||+||+.++|+++.+-.. ...+++.++++|.|.|.++...+++|
T Consensus        74 ~~naWl~y~W~D~~LrW-~pseygnI~dvR~p~~~iWkPDVLLYNSade~FDs-Ty~tN~Vv~~tG~v~~vPPGIfk~sC  151 (486)
T KOG3646|consen   74 SVNAWLQYQWNDYKLRW-DPSEYGNITDIRFPGGNIWKPDVLLYNSADEQFDS-TYKTNYVVYSTGSVLWVPPGIFKSSC  151 (486)
T ss_pred             hhhhhhheeehhhhhcc-CHHHhCCceeeccCCccccCCceeccccccccCCC-cceeeEEEccCCeeeecCCceeeeee
Confidence            57899999999999999 9999999999999 589999999999987644211 23578999999999999999999999


Q ss_pred             cccccccCCCCCeeEEEEEcccccCCcEEEEEecCCCc
Q psy6970          82 QGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDT  119 (148)
Q Consensus        82 ~~~l~~fPfD~q~C~l~~~S~~y~~~~v~l~~~~~~~~  119 (148)
                      .+|++.||||.|.|.++||||+|++..++|.....+..
T Consensus       152 kiDItwFPFD~Q~C~mKFGSWTY~G~~lDL~~~~~~g~  189 (486)
T KOG3646|consen  152 KIDITWFPFDDQVCYLKFGSWTYAGILLDLRIDDEDGG  189 (486)
T ss_pred             EEEEEEecccccEEEEEeeeEEEcceeeeeeeccccCC
Confidence            99999999999999999999999999999887655444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	148
3rhw_A	347	C. Elegans Glutamate-Gated Chloride Channel (Glucl)		1e-12

>pdb|3RHW|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In Complex With Fab And Ivermectin Length = 347

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 8/151 (5%)
Query: 1   KYEVEFLLQQQWHDPRLEYF----NQTTYDFLNAIHHHSDVWLPDTYFIMHGD-FKDPLI 55
           +Y  +  L++ W D RL Y      Q  +  L   H    +W+PDT+F      +K  + 
Sbjct: 48  EYSAQLTLRESWIDKRLSYGVKGDGQPDFVILTVGHQ---IWMPDTFFPNEKQAYKHTID 104
Query: 56  PVHFALRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKN 115
             +  +RI+ +GTV Y +R  L+LSC   L  +P D   CS  + S +Y    IEY+WK 
Sbjct: 105 KPNVLIRIHNDGTVLYSVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKE 164
Query: 116 DEDTLRKSPSLTTLNAYLITNRTISCPTKTT 146
                 K    ++L ++ +TN + +  T  T
Sbjct: 165 HSPLQLKVGLSSSLPSFQLTNTSTTYCTSVT 195

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	148
3rhw_A	347	Avermectin-sensitive glutamate-gated chloride CHA	3e-30
3rqw_A	322	ELIC pentameric ligand gated ION channel from ERW	2e-27
3igq_A	201	GLR4197 protein; plgic Cys-loop, membrane protein,	9e-24
3tlw_A	321	GLR4197 protein, GLIC; Cys-loop receptor family, m	1e-21
2bg9_A	370	Acetylcholine receptor protein, alpha chain; ION c	2e-10
4aq5_A	461	Acetylcholine receptor subunit alpha; membrane pro	6e-10
2qc1_B	212	Acetylcholine receptor subunit alpha; nicotinic ac	1e-09
4aq5_E	488	Acetylcholine receptor gamma subunit; membrane pro	5e-09
3sq6_A	204	ACHBP, neuronal acetylcholine receptor subunit alp	1e-08
4aq5_C	522	Acetylcholine receptor delta subunit; membrane pro	1e-08
4aq5_B	493	Acetylcholine receptor beta subunit; membrane prot	1e-08
2bg9_C	369	Acetylcholine receptor protein, delta chain; ION c	1e-08
2bg9_B	370	Acetylcholine receptor protein, beta chain; ION ch	2e-08
2wn9_A	228	Soluble acetylcholine receptor; 4-0H-DMXBA, acetyl	2e-08
2bg9_E	370	Acetylcholine receptor protein, gamma chain; ION c	3e-08
2bj0_A	203	Acetylcholine-binding protein; 3D-structure, glyco	3e-08
4afh_A	230	ACHBP; acetylcholine-binding protein, nicotinic re	2e-07
1uw6_A	211	Acetylcholine-binding protein; pentamer, IGG fold,	1e-06

>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A* Length = 347

 Score =  111 bits (278), Expect = 3e-30
 Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 6/150 (4%)

Query: 2   YEVEFLLQQQWHDPRLEYFNQTTYDFLNAIH--HHSDVWLPDTYFIM--HGDFKDPLIPV 57
           Y  +  L++ W D RL  +        + +       +W+PDT+F             P 
Sbjct: 49  YSAQLTLRESWIDKRLS-YGVKGDGQPDFVILTVGHQIWMPDTFFPNEKQAYKHTIDKP- 106

Query: 58  HFALRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDE 117
           +  +RI+ +GTV Y +R  L+LSC   L  +P D   CS  + S +Y    IEY+WK   
Sbjct: 107 NVLIRIHNDGTVLYSVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKEHS 166

Query: 118 DTLRKSPSLTTLNAYLITNRTISCPTKTTW 147
               K    ++L ++ +TN + +  T  T 
Sbjct: 167 PLQLKVGLSSSLPSFQLTNTSTTYCTSVTN 196

>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A Length = 322

 Score =  102 bits (257), Expect = 2e-27
 Identities = 22/128 (17%), Positives = 40/128 (31%), Gaps = 6/128 (4%)

Query: 2   YEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHH---SDVWLPDTYFIMHGDFKDPLIPVH 58
           Y+V+  +  QW     +          N        + +W+P   FI   +        +
Sbjct: 33  YKVDGYIVAQWTGKPRKTPGDKPLIVENTQIERWINNGLWVPALEFI---NVVGSPDTGN 89

Query: 59  FALRIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDED 118
             L ++ +G V Y  R     S      +FPFD       +E  SY    + +       
Sbjct: 90  KRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRFSDIQVYT 149

Query: 119 TLRKSPSL 126
               +  +
Sbjct: 150 ENIDNEEI 157

>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus} Length = 201

 Score = 90.5 bits (225), Expect = 9e-24
 Identities = 22/148 (14%), Positives = 47/148 (31%), Gaps = 6/148 (4%)

Query: 2   YEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSDVWLPDTYFIMHGDFKDPLIPVHFAL 61
           ++V   L   W D RL  F+          +    +W+P+  F+   + ++        +
Sbjct: 37  FKVNAFLSLSWKDRRLA-FDPVRSGVRVKTYEPEAIWIPEIRFV---NVENARDADVVDI 92

Query: 62  RIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLR 121
            +  +GTV YL R    +           D  T    +   S +   I      ++    
Sbjct: 93  SVSPDGTVQYLERFSARVLSPLDGRRTESDSQTLHIYLIVRSVDTRNIVLAVDLEKVGKN 152

Query: 122 KSPSLT--TLNAYLITNRTISCPTKTTW 147
               LT   + ++    +  +   +   
Sbjct: 153 DDVFLTGWDIESFTAVVKPANFALEDRL 180

>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Length = 321

 Score = 86.9 bits (216), Expect = 1e-21
 Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 4/116 (3%)

Query: 2   YEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSDVWLPDTYFIMHGDFKDPLIPVHFAL 61
           ++V   L   W D RL  F+          +    +W+P+  F+   + ++        +
Sbjct: 41  FKVNAFLSLSWKDRRLA-FDPVRSGVRVKTYEPEAIWIPEIRFV---NVENARDADVVDI 96

Query: 62  RIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDE 117
            +  +GTV YL R    +        +PFD  T    +   S +   I      ++
Sbjct: 97  SVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVDLEK 152

>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 56.4 bits (136), Expect = 2e-10
 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 3/113 (2%)

Query: 6   FLLQQQWHDPRLEYFNQTTYDFLNAIHHHSD-VWLPDTYFIMHGDFKDPLIPVHFALRIY 64
             L+QQW D RL + N   Y  +  I   SD VWLPD     + D  D  I     L + 
Sbjct: 54  VRLRQQWIDVRLRW-NPADYGGIKKIRLPSDDVWLPDLVLYNNAD-GDFAIVHMTKLLLD 111

Query: 65  RNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDE 117
             G + +         C+  +  FPFD   C+  +   +Y+ + +    ++D 
Sbjct: 112 YTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPESDR 164

>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A Length = 461

 Score = 55.0 bits (132), Expect = 6e-10
 Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 3/116 (2%)

Query: 6   FLLQQQWHDPRLEYFNQTTYDFLNAIHHHSD-VWLPDTYFIMHGDFKDPLIPVHFALRIY 64
             L+QQW D RL + N   Y  +  I   SD VWLPD     + D    ++ +   L + 
Sbjct: 78  VRLRQQWIDVRLRW-NPADYGGIKKIRLPSDDVWLPDLVLYNNADGDFAIVHMTKLL-LD 135

Query: 65  RNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTL 120
             G + +         C+  +  FPFD   C+  +   +Y+ + +    ++D   L
Sbjct: 136 YTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPESDRPDL 191

>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B Length = 212

 Score = 53.6 bits (129), Expect = 1e-09
 Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 7/113 (6%)

Query: 8   LQQQWHDPRLEYFNQTTYDFLNAIHHHSD-VWLPDTYFI--MHGDFKDPLIPVHFALRIY 64
           L+QQW D  L++ N   Y  +  IH  S+ +W PD        GDF          + + 
Sbjct: 57  LKQQWVDYNLKW-NPDDYGGVKKIHIPSEKIWRPDVVLYNNADGDFAIVKFT---KVLLD 112

Query: 65  RNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDE 117
             G + +         C+  +  FPFD+  CS  + + +Y+ SA+    ++D+
Sbjct: 113 YTGHITWTPPAIFKSYCEIIVTHFPFDEQNCSMKLGTRTYDGSAVAINPESDQ 165

>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E Length = 488

 Score = 52.4 bits (125), Expect = 5e-09
 Identities = 24/113 (21%), Positives = 50/113 (44%), Gaps = 3/113 (2%)

Query: 9   QQQWHDPRLEYFNQTTYDFLNAIH-HHSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRNG 67
           + QW+D RL + N + Y+ ++ +      +WLPD   + +       +  +  + +Y +G
Sbjct: 56  EIQWNDYRLSW-NTSEYEGIDLVRIPSELLWLPDVV-LENNVDGQFEVAYYANVLVYNDG 113

Query: 68  TVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTL 120
           ++ +L       +C  ++  FPFD   CS    S +Y    +      +E  +
Sbjct: 114 SMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQLSAEEGEV 166

>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} PDB: 3sq9_A* Length = 204

 Score = 50.6 bits (121), Expect = 1e-08
 Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 7/107 (6%)

Query: 8   LQQQWHDPRLEYFNQTTYDFLNAIH-HHSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRN 66
           LQ  W D  L++ N + Y  +  +    S +W+PD          + L P      +  +
Sbjct: 54  LQMSWTDHYLQW-NVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLTPQL--ALVNSS 110

Query: 67  GTVNYLMRRHLILSCQGSLHIFPFDDP-TCSFAMESISYEQSAIEYV 112
           G V YL       SC   +     +   TC     S ++    ++  
Sbjct: 111 GHVQYLPSIRQRFSC--DVSGVDTESGATCKLKFGSWTHHSRELDLQ 155

>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C Length = 522

 Score = 51.3 bits (122), Expect = 1e-08
 Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 3/111 (2%)

Query: 8   LQQQWHDPRLEYFNQTTYDFLNAIHHHSD-VWLPDTYFIMHGDFKDPLIPVHFALRIYRN 66
           +   W+D RL + N + Y  ++ +    + +W+PD   + + +     +     + +  N
Sbjct: 79  MDHAWYDHRLTW-NASEYSDISILRLRPELIWIPDIV-LQNNNDGQYNVAYFCNVLVRPN 136

Query: 67  GTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDE 117
           G V +L       SC  ++  FPFD   CS    +++Y  + I      D 
Sbjct: 137 GYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEISMDLMTDT 187

>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B Length = 493

 Score = 51.3 bits (122), Expect = 1e-08
 Identities = 28/129 (21%), Positives = 49/129 (37%), Gaps = 3/129 (2%)

Query: 9   QQQWHDPRLEYFNQTTYDFLNAIH-HHSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRNG 67
              W D RL++ +   Y+ +  +     DVW PD   + + D     I +H  + +   G
Sbjct: 81  NLAWTDYRLQW-DPAAYEGIKDLSIPSDDVWQPDIVLMNNND-GSFEITLHVNVLVQHTG 138

Query: 68  TVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKSPSLT 127
            V++        SC   +  FPFD   C+   +S +Y+ S +      D    R+   + 
Sbjct: 139 AVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHALDAKGEREVKEIM 198

Query: 128 TLNAYLITN 136
                   N
Sbjct: 199 INQDAFTEN 207

>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 369

 Score = 51.0 bits (122), Expect = 1e-08
 Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 7/119 (5%)

Query: 8   LQQQWHDPRLEYFNQTTYDFLNAIHHHSD-VWLPDTYFI--MHGDFKDPLIPVHFALRIY 64
           +   W+D RL + N + Y  ++ +    + +W+PD        G +    +     + + 
Sbjct: 58  MDHAWYDHRLTW-NASEYSDISILRLRPELIWIPDIVLQNNNDGQYN---VAYFCNVLVR 113

Query: 65  RNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKS 123
            NG V +L       SC  ++  FPFD   CS    +++Y  + I      D +   ++
Sbjct: 114 PNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEISMDLIIDPEAFTEN 172

>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 51.0 bits (122), Expect = 2e-08
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 3/111 (2%)

Query: 8   LQQQWHDPRLEYFNQTTYDFLNAIHHHSD-VWLPDTYFIMHGDFKDPLIPVHFALRIYRN 66
           L   W D RL++ +   Y+ +  +   SD VW PD   + + D     I +H  + +   
Sbjct: 56  LNLAWTDYRLQW-DPAAYEGIKDLSIPSDDVWQPDIVLMNNND-GSFEITLHVNVLVQHT 113

Query: 67  GTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDE 117
           G V++        SC   +  FPFD   C+   +S +Y+ S +      D 
Sbjct: 114 GAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHALDA 164

>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ... Length = 228

 Score = 50.2 bits (120), Expect = 2e-08
 Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 5/111 (4%)

Query: 8   LQQQWHDPRLEYFNQTTYDFLNAIH-HHSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRN 66
            QQ+W    L + +   Y  +       +D+W PD            L P      +  +
Sbjct: 65  EQQRWKLNSLMW-DPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQI--AVVTHD 121

Query: 67  GTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDE 117
           G+V ++  + L   C  +      +  TC+    S  Y    I+     D+
Sbjct: 122 GSVMFIPAQRLSFMCDPTGV-DSEEGATCAVKFGSWVYSGFEIDLKTDTDQ 171

>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 50.3 bits (120), Expect = 3e-08
 Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 7/113 (6%)

Query: 9   QQQWHDPRLEYFNQTTYDFLNAIHHHSD-VWLPDTYFI--MHGDFKDPLIPVHFALRIYR 65
           + QW+D RL + N + Y+ ++ +   S+ +WLPD      + G F+         + +Y 
Sbjct: 56  EIQWNDYRLSW-NTSEYEGIDLVRIPSELLWLPDVVLENNVDGQFEVAYYA---NVLVYN 111

Query: 66  NGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDED 118
           +G++ +L       +C  ++  FPFD   CS    S +Y    +      +E 
Sbjct: 112 DGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQLSAEEG 164

>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus} Length = 203

 Score = 49.4 bits (118), Expect = 3e-08
 Identities = 16/111 (14%), Positives = 40/111 (36%), Gaps = 6/111 (5%)

Query: 8   LQQQWHDPRLEYFNQTTYDFLNAIHHHSD-VWLPDTYFIMHGDFKDPLIPVHFALRIYRN 66
            Q  W  P     +  +   L+ +      +W PD  F       + L      + + ++
Sbjct: 52  TQASWKVPYY--SSLLSSSSLDQVSLPVSKMWTPDLSFYNAIAAPELLSADR--VVVSKD 107

Query: 67  GTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDE 117
           G+V Y+  + +  +C   +++      TC   + S +++      +   + 
Sbjct: 108 GSVIYVPSQRVRFTCD-LINVDTEPGATCRIKVGSWTHDNKQFALITGEEG 157

>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* Length = 230

 Score = 47.2 bits (112), Expect = 2e-07
 Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 8/111 (7%)

Query: 8   LQQQWHDPRLEYFNQTTYDFLNAIHHHSD-VWLPDTYFIMHGDFKDPLIPVHFALRIYRN 66
           ++  W D  L + +         I    D +W PD   + +    D  +       ++ N
Sbjct: 65  VKLSWVDTILRW-DPEPPFDFQKIEISPDEIWTPDIK-LFNSVDLDMTLDRTTQAIVFSN 122

Query: 67  GTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDE 117
           GTV ++    L + C         D  +C F   S  Y    ++  + +D+
Sbjct: 123 GTVLWIPPAVLKVLCV-----SQDDVDSCHFQFGSWVYSVDEVDIHFMDDK 168

>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A* Length = 211

 Score = 45.3 bits (107), Expect = 1e-06
 Identities = 18/111 (16%), Positives = 33/111 (29%), Gaps = 7/111 (6%)

Query: 8   LQQQWHDPRLEYFNQTTYDFLNAIHHHSD-VWLPDTYFIMHGDFKDPLIPVHFALRIYRN 66
            Q  W D  L +    +    + +      +W+PD          +  +      R+  +
Sbjct: 55  QQTTWSDRTLAW---NSSHSPDQVSVPISSLWVPDLAAYNAISKPE--VLTPQLARVVSD 109

Query: 67  GTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDE 117
           G V Y+       SC  S         TC   + S ++    I      + 
Sbjct: 110 GEVLYMPSIRQRFSCDVSGVDTE-SGATCRIKIGSWTHHSREISVDPTTEN 159

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	148
2qc1_B	212	Acetylcholine receptor subunit alpha; nicotinic ac	100.0
3igq_A	201	GLR4197 protein; plgic Cys-loop, membrane protein,	100.0
3sq6_A	204	ACHBP, neuronal acetylcholine receptor subunit alp	100.0
4aod_A	205	Acetylcholine-binding protein type 1; ligand gated	100.0
4aoe_A	205	Acetylcholine-binding protein type 2; ligand gated	100.0
3tlw_A	321	GLR4197 protein, GLIC; Cys-loop receptor family, m	100.0
3rhw_A	347	Avermectin-sensitive glutamate-gated chloride CHA	100.0
2bj0_A	203	Acetylcholine-binding protein; 3D-structure, glyco	100.0
2bg9_A	370	Acetylcholine receptor protein, alpha chain; ION c	99.98
2bg9_E	370	Acetylcholine receptor protein, gamma chain; ION c	99.98
2bg9_B	370	Acetylcholine receptor protein, beta chain; ION ch	99.98
2bg9_C	369	Acetylcholine receptor protein, delta chain; ION c	99.98
4afh_A	230	ACHBP; acetylcholine-binding protein, nicotinic re	99.98
4aq5_A	461	Acetylcholine receptor subunit alpha; membrane pro	99.97
1uw6_A	211	Acetylcholine-binding protein; pentamer, IGG fold,	99.97
2wn9_A	228	Soluble acetylcholine receptor; 4-0H-DMXBA, acetyl	99.97
4aq5_B	493	Acetylcholine receptor beta subunit; membrane prot	99.97
4aq5_C	522	Acetylcholine receptor delta subunit; membrane pro	99.97
4aq5_E	488	Acetylcholine receptor gamma subunit; membrane pro	99.97
3rqw_A	322	ELIC pentameric ligand gated ION channel from ERW	99.97

>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B

Probab=100.00  E-value=7.1e-36  Score=220.01  Aligned_cols=134  Identities=21%  Similarity=0.355  Sum_probs=115.7

Q ss_pred             CeEEEEEEEcEEECCCCccCCCCCCCCcceeee-cceeecCCeEEeecccccCCCcccceEEEEeeCCEEEEecceeEEE
Q psy6970           1 KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHH-HSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLIL   79 (148)
Q Consensus         1 ~ft~~~~l~~~W~D~rL~w~~p~~~~~i~~~~~-~~~iW~Pdi~~~n~~~~~~~~~~~~~~~~i~~~G~V~~~~~~~~~~   79 (148)
                      +|++++|++|.|+|+||+| +|++|+++..+++ .++||+||++++|+++....... ...++|+++|+|.+.+++++++
T Consensus        50 ~~~~~~~~~~~W~D~rL~w-~~~~~~~i~~l~~~~~~iW~PDi~~~N~~~~~~~~~~-~~~~~v~~~G~V~~~~~~~~~~  127 (212)
T 2qc1_B           50 IVTTNVRLKQQWVDYNLKW-NPDDYGGVKKIHIPSEKIWRPDVVLYNNADGDFAIVK-FTKVLLDYTGHITWTPPAIFKS  127 (212)
T ss_dssp             EEEEEEEEEEEEECTTCCC-CGGGGTTCCEEEECGGGSCCCCEEECCBTTTSSCEEC-CCCEEEETTCEEEECCEEEEEE
T ss_pred             EEEEEEEEeeEEECCCccc-ChhhcCCeeEEEcchhhccCCceeccccccccccccc-eeeEEEECCeeEEEEeeeEEEE
Confidence            4899999999999999999 9999999999988 58999999999997653322111 2589999999999999999999


Q ss_pred             EccccccccCCCCCeeEEEEEcccccCCcEEEEEecCCCceeecCCccccccceecceEE
Q psy6970          80 SCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKSPSLTTLNAYLITNRTI  139 (148)
Q Consensus        80 ~C~~~l~~fPfD~q~C~l~~~S~~y~~~~v~l~~~~~~~~v~~~~~~~~l~~~~~~~~~~  139 (148)
                      +|+|++++||||+|+|.|.|+||+|+.++|+|.|..+  .+....-. ..++|.+.+...
T Consensus       128 ~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~--~~~~~~~~-~~~ew~l~~~~~  184 (212)
T 2qc1_B          128 YCEIIVTHFPFDEQNCSMKLGTRTYDGSAVAINPESD--QPDLSNFM-ESGEWVIKEARG  184 (212)
T ss_dssp             EEEECCSSSSCCEEEEEEEEEESSCCTTTEEEEESCS--SCBCTTCC-CCSSEEEEEEEE
T ss_pred             EccceeecCCCCceEEeEEEEcccccCceEEEEeccc--ccchhhCc-cCCCEEEEEeEE
Confidence            9999999999999999999999999999999999764  34444443 688999888764

>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus}

Probab=100.00  E-value=1.2e-35  Score=217.21  Aligned_cols=131  Identities=18%  Similarity=0.260  Sum_probs=110.0

Q ss_pred             CeEEEEEEEcEEECCCCccCCCCCCCCcceeee-cceeecCCeEEeecccccCCCcccceEEEEeeCCEEEEecceeEEE
Q psy6970           1 KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHH-HSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLIL   79 (148)
Q Consensus         1 ~ft~~~~l~~~W~D~rL~w~~p~~~~~i~~~~~-~~~iW~Pdi~~~n~~~~~~~~~~~~~~~~i~~~G~V~~~~~~~~~~   79 (148)
                      +|++++|++|+|+|+||+| +|++ +++..+.+ .++||+||++++|+++...   ..+..++|+++|+|.|.+++++++
T Consensus        36 ~~t~~~~l~~~W~D~rL~w-~~~~-~~i~~~~~~~~~IW~PDi~l~N~~~~~~---~~~~~v~v~~~G~V~~~~~~~~~s  110 (201)
T 3igq_A           36 TFKVNAFLSLSWKDRRLAF-DPVR-SGVRVKTYEPEAIWIPEIRFVNVENARD---ADVVDISVSPDGTVQYLERFSARV  110 (201)
T ss_dssp             EEEEEEEEEEEEECGGGCC-CHHH-HTCSCEECCGGGSCCCCEEESSBSSSCE---EEEEEEEECTTCEEEEEEEEEEEE
T ss_pred             EEEEEEEEeeEEECCccCC-CCcC-CCEeEecccccCcCccCEEEEccccccc---ccceEEEEeCCCcEEEecceeEEE
Confidence            4899999999999999999 9887 57888877 5999999999999865432   346799999999999999999999


Q ss_pred             EccccccccCCCCCeeEEEEEcccccCCcEEEEEecCCCceeecCCccccccceecceEE
Q psy6970          80 SCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKSPSLTTLNAYLITNRTI  139 (148)
Q Consensus        80 ~C~~~l~~fPfD~q~C~l~~~S~~y~~~~v~l~~~~~~~~v~~~~~~~~l~~~~~~~~~~  139 (148)
                      +|+|++++||||+|+|.|+|+||+|+.++|+|.|.+  .++...+.+ .++||.+.+.+.
T Consensus       111 ~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~--~~~~~~~~~-~~~ew~l~~~~~  167 (201)
T 3igq_A          111 LSPLDGRRTESDSQTLHIYLIVRSVDTRNIVLAVDL--EKVGKNDDV-FLTGWDIESFTA  167 (201)
T ss_dssp             ECCCC------CEEEEEEEEEECCCSSCCEEEEECG--GGCEESCSE-EETTEEEEEEEE
T ss_pred             ecCcccccCCCCccEeeEEEeccCCCceEEEEEecC--CccccccCc-ccCCeEEEeeEE
Confidence            999999999999999999999999999999999975  356666665 899999988764

>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A*

Probab=100.00  E-value=1.3e-34  Score=212.12  Aligned_cols=128  Identities=20%  Similarity=0.239  Sum_probs=111.1

Q ss_pred             CeEEEEEEEcEEECCCCccCCCCCCCCcceeee-cceeecCCeEEeeccc--ccCCCcccceEEEEeeCCEEEEecceeE
Q psy6970           1 KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHH-HSDVWLPDTYFIMHGD--FKDPLIPVHFALRIYRNGTVNYLMRRHL   77 (148)
Q Consensus         1 ~ft~~~~l~~~W~D~rL~w~~p~~~~~i~~~~~-~~~iW~Pdi~~~n~~~--~~~~~~~~~~~~~i~~~G~V~~~~~~~~   77 (148)
                      +|++++|++|+|+|+||+| +|++|+++..+++ .++||+||+++.|+++  ....    ...++|+++|+|.|.+++++
T Consensus        47 ~~t~~~~~~~~W~D~rL~w-~~~~~~~i~~i~~~~~~iW~PDi~~~N~~~~~~~~~----~~~v~v~~~G~V~~~~~~~~  121 (204)
T 3sq6_A           47 VVDVVFWLQMSWTDHYLQW-NVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLT----PQLALVNSSGHVQYLPSIRQ  121 (204)
T ss_dssp             EEEEEEEEEEEEECGGGCC-CTTTSSSCCEEEEEGGGSCCCCEEETTBSSCCEECS----CCEEEEETTSEEEECCEEEE
T ss_pred             EEEEEEeeeeEEECCCccc-ChHHcCCccEEEcCHHHCcCCCEEeEcccccCCccc----ccEEEEEeCCEEEEecCeeE
Confidence            4899999999999999999 9999999999988 5899999999999765  2221    12899999999999999999


Q ss_pred             EEEccccccccCCCCCeeEEEEEcccccCCcEEEEEecCCCceeecCCccccccceecceEE
Q psy6970          78 ILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKSPSLTTLNAYLITNRTI  139 (148)
Q Consensus        78 ~~~C~~~l~~fPfD~q~C~l~~~S~~y~~~~v~l~~~~~~~~v~~~~~~~~l~~~~~~~~~~  139 (148)
                      +++|+|++ +||||+|+|.|.|+||+|+.++|+|.|..    +..... .+.++|.+.+...
T Consensus       122 ~~~C~mdl-~fPfD~Q~C~l~f~S~~y~~~~v~l~~~~----~~~~~~-~~~~eW~l~~~~~  177 (204)
T 3sq6_A          122 RFSCDVSG-VDTESGATCKLKFGSWTHHSRELDLQMQE----ADISGY-IPYSRFELVGVTQ  177 (204)
T ss_dssp             EEECCCGG-GSSSSCEEEEEEEEESSCCTTTEEEECCC----CCCTTS-CSSSSEEEEEEEE
T ss_pred             EEeccccc-cCCCCCcEEEEEEEeecccCeEEEEEecc----CCHHHc-ccCCCEEEEEeEE
Confidence            99999999 99999999999999999999999999743    233333 3788999888764

>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata}

Probab=100.00  E-value=6.3e-34  Score=208.60  Aligned_cols=129  Identities=16%  Similarity=0.259  Sum_probs=108.2

Q ss_pred             CeEEEEEEEcEEECCCCccCCCCCCCCcceeee-cceeecCCeEEeecccccCCCcccceEEEEeeCCEEEEecceeEEE
Q psy6970           1 KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHH-HSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLIL   79 (148)
Q Consensus         1 ~ft~~~~l~~~W~D~rL~w~~p~~~~~i~~~~~-~~~iW~Pdi~~~n~~~~~~~~~~~~~~~~i~~~G~V~~~~~~~~~~   79 (148)
                      +|++++|++|+|+|+||+| ++ +|+||+.+++ .++||+||++++|+++....  ..+..++|+++|+|.|.+++++++
T Consensus        49 ~~t~~~wl~~~W~D~rL~W-~~-~~~~i~~i~v~~~~IW~PDi~l~N~~~~~~~--~~~~~~~v~~~G~V~~~~~~~~~s  124 (205)
T 4aod_A           49 EVDIGLWTTLVWKDRCLNW-FN-EFTSFKELTVPIAEIWTPDIFIFDSVGAPEI--FSDKLARVSQDGTVTYVPQLKVRL  124 (205)
T ss_dssp             EEEEEEEEEEEEECCCCCC-SC-CCSCCCEEEEEGGGSCCCCEEETTBSSCCEE--CSCCEEEEETTSEEEECCEEEEEE
T ss_pred             EEEEEEEEEEEEECCceee-CC-cCCCccEeeccHHhcCcCCEEEEccccccee--ecceEEEEecCCEEEEeccEEEEE
Confidence            4899999999999999999 86 6999999988 58999999999997653322  234589999999999999999999


Q ss_pred             EccccccccCCCCCeeEEEEEcccccCCcEEEEEecCCCceeecCCccccccceecceE
Q psy6970          80 SCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKSPSLTTLNAYLITNRT  138 (148)
Q Consensus        80 ~C~~~l~~fPfD~q~C~l~~~S~~y~~~~v~l~~~~~~~~v~~~~~~~~l~~~~~~~~~  138 (148)
                      +|+|++..|||| |+|.|+||||+|++.+|+|.|..+   +....-. ...+|.+.+.+
T Consensus       125 ~C~~d~~~fPfD-Q~C~l~fgSw~y~~~~i~l~~~~~---~dl~~~~-~n~EW~l~~~~  178 (205)
T 4aod_A          125 SCPLADLKLETG-VTCSLKSGSWTHSTQELTLEVNAK---VDLGDYA-SDTRFQLLNAT  178 (205)
T ss_dssp             ECCCTTSSSSSC-EEEEEEEEESSCCTTTEEEECSSS---CBCTTSC-TTCSSEEEEEE
T ss_pred             EecCccccCCCC-cEEEEEEECccccccEEEEEECCC---ccccccc-ccCCEEEEeeE
Confidence            999999999999 999999999999999999998542   3333222 45667776654

>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata}

Probab=100.00  E-value=7.8e-34  Score=208.04  Aligned_cols=129  Identities=14%  Similarity=0.289  Sum_probs=106.2

Q ss_pred             CeEEEEEEEcEEECCCCccCCCCCCCCcceeee-cceeecCCeEEeecccccCCCcccceEEEEeeCCEEEEecceeEEE
Q psy6970           1 KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHH-HSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLIL   79 (148)
Q Consensus         1 ~ft~~~~l~~~W~D~rL~w~~p~~~~~i~~~~~-~~~iW~Pdi~~~n~~~~~~~~~~~~~~~~i~~~G~V~~~~~~~~~~   79 (148)
                      +|++++|++|+|+|+||+| +| +|+|++.+++ .++||+||++++|+++....  ..+..++|+++|+|.|.+++++++
T Consensus        49 ~~~~~~wl~~~W~D~rL~W-~~-~~~~i~~i~v~~~~IW~PDi~l~N~~~~~~~--~~~~~v~v~~~G~V~~~~~~~~~s  124 (205)
T 4aoe_A           49 QVELGLWLVISWKDRSLSW-SN-ECTTFNELTLPSKYIWLPHIEVYNSIGKPGI--HSDQLVRVYKDGTVTFVPQYTIRF  124 (205)
T ss_dssp             EEEEEEEEEEEEECCCCCC-SC-CCSCCCEEEEEGGGSCCCCCEETTBSSCCEE--CSCCEEEEETTSEEEECCEEEEEE
T ss_pred             EEEEEEEEEEEEECCcccc-CC-cCCCccEEEeCHHHhccccEEEecccccccc--ccceEEEEeCCcEEEEeCcEEEEE
Confidence            3799999999999999999 87 7999999998 58999999999997643221  235689999999999999999999


Q ss_pred             EccccccccCCCCCeeEEEEEcccccCCcEEEEEecCCCceeecCCccccccceecceE
Q psy6970          80 SCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKSPSLTTLNAYLITNRT  138 (148)
Q Consensus        80 ~C~~~l~~fPfD~q~C~l~~~S~~y~~~~v~l~~~~~~~~v~~~~~~~~l~~~~~~~~~  138 (148)
                      +|.|+ ..||||+|+|.|+||||+|+..+|.|.+.+   .+....-. .-.+|.+.+.+
T Consensus       125 ~C~~d-~~fPfD~Q~C~l~fgSw~y~~~~l~l~~~~---~~dl~~~~-~n~EW~l~~~~  178 (205)
T 4aoe_A          125 SCALE-NVTTEQGAACTLKFGPWTYDVRDLVLDESQ---QVDLTTYA-GGERFQLIEAK  178 (205)
T ss_dssp             ECCCT-TSSSSSCEEEEEEEECSSCCTTTEEEECSS---SCBCTTSC-TTCSEEEEEEE
T ss_pred             ecccC-cCCCccCCeEEEEEECccCChheEEEecCc---ccchhccc-cCCcEEEEeeE
Confidence            99999 889999999999999999999999997533   33332222 34566666554

>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...

Probab=100.00  E-value=1.2e-33  Score=219.44  Aligned_cols=131  Identities=19%  Similarity=0.326  Sum_probs=117.3

Q ss_pred             CeEEEEEEEcEEECCCCccCCCCCCCCcceeee-cceeecCCeEEeecccccCCCcccceEEEEeeCCEEEEecceeEEE
Q psy6970           1 KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHH-HSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLIL   79 (148)
Q Consensus         1 ~ft~~~~l~~~W~D~rL~w~~p~~~~~i~~~~~-~~~iW~Pdi~~~n~~~~~~~~~~~~~~~~i~~~G~V~~~~~~~~~~   79 (148)
                      +|++++|++|+|+|+||+| +|++++ ++.+.+ .++||+||+++.|+++..   ...+..++|++||+|.+.+|++.++
T Consensus        40 ~~t~~~~l~~~W~D~rL~w-~~~~~~-i~~~~~~~~~IW~PDi~l~N~~~~~---~~~~~~~~v~~~G~V~~~~~~~~~~  114 (321)
T 3tlw_A           40 TFKVNAFLSLSWKDRRLAF-DPVRSG-VRVKTYEPEAIWIPEIRFVNVENAR---DADVVDISVSPDGTVQYLERFSARV  114 (321)
T ss_dssp             EEEEEEEEEEEEECGGGCC-CSTTTC-CSSEECCGGGSCCCCEEESSBSSCC---EEEEEEEEECTTCEEEEEEEEEEEE
T ss_pred             EEEEEEEEeeEEECcccCC-CCccCC-eeeecccccCeEcCcEEeecccccc---cccceeEEEeCCccEEEecceEEEE
Confidence            4899999999999999999 999998 888877 599999999999976644   2346799999999999999999999


Q ss_pred             EccccccccCCCCCeeEEEEEcccccCCcEEEEEecCCCceeecCCccccccceecceEE
Q psy6970          80 SCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKSPSLTTLNAYLITNRTI  139 (148)
Q Consensus        80 ~C~~~l~~fPfD~q~C~l~~~S~~y~~~~v~l~~~~~~~~v~~~~~~~~l~~~~~~~~~~  139 (148)
                      .|+||+++||||+|+|+|+|+||+|+.+++++.|.+  .++..++.. .++||.+.+.+.
T Consensus       115 ~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~--~~~~~~~~~-~~~ew~l~~~~~  171 (321)
T 3tlw_A          115 LSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVDL--EKVGKNDDV-FLTGWDIESFTA  171 (321)
T ss_dssp             ECCCCCTTTTSCEEEEEEEEEEECCSSCCEEEEECG--GGCEECTTC-CBTTEEEEEEEE
T ss_pred             EEEeecccCCCCceeEeEEEecccCChhhEEEEEcC--Ccccccccc-cccceEEEeeEe
Confidence            999999999999999999999999999999999985  356666665 899999998865

>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*

Probab=100.00  E-value=1.7e-33  Score=220.63  Aligned_cols=135  Identities=30%  Similarity=0.557  Sum_probs=117.3

Q ss_pred             CeEEEEEEEcEEECCCCccCCCCCCCCcceeee-c-ceeecCCeEEeeccc--ccCCCcccceEEEEeeCCEEEEeccee
Q psy6970           1 KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHH-H-SDVWLPDTYFIMHGD--FKDPLIPVHFALRIYRNGTVNYLMRRH   76 (148)
Q Consensus         1 ~ft~~~~l~~~W~D~rL~w~~p~~~~~i~~~~~-~-~~iW~Pdi~~~n~~~--~~~~~~~~~~~~~i~~~G~V~~~~~~~   76 (148)
                      +|++++|++|+|+|+||+| ||+++++++.+.+ + ++||+||+++.|+++  ++... ..+..++|++||+|.|.++++
T Consensus        48 ~~t~~~~l~~~W~D~rL~w-~p~~~~~~~~l~~~~~~~IW~PDi~l~N~~~~~~~~~~-~~n~~v~i~~~G~V~~~~~~~  125 (347)
T 3rhw_A           48 EYSAQLTLRESWIDKRLSY-GVKGDGQPDFVILTVGHQIWMPDTFFPNEKQAYKHTID-KPNVLIRIHNDGTVLYSVRIS  125 (347)
T ss_dssp             EEEEEEEEEEEEECGGGCS-STTCSSSCSEEECCTTCCCCCCCEECTTEEEEEECCSS-SCSEEEEEETTSEEEEEEEEE
T ss_pred             eEEEEEEEeeEEECcccCC-CCccCCCceEEEecchhceecCCEeeeccccccccccc-cccEEEEEeCCCCEEEecceE
Confidence            4899999999999999999 9999999988765 4 899999999999754  33322 235688999999999999999


Q ss_pred             EEEEccccccccCCCCCeeEEEEEcccccCCcEEEEEecCCCceeecC--CccccccceecceEE
Q psy6970          77 LILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKSP--SLTTLNAYLITNRTI  139 (148)
Q Consensus        77 ~~~~C~~~l~~fPfD~q~C~l~~~S~~y~~~~v~l~~~~~~~~v~~~~--~~~~l~~~~~~~~~~  139 (148)
                      .++.|+||+++||||+|+|.|+|+||+|+.+++++.|..+ .++...+  .+ .+++|.+.+...
T Consensus       126 ~~s~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~-~~~~~~~~~~~-~~~e~~l~~~~~  188 (347)
T 3rhw_A          126 LVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKEH-SPLQLKVGLSS-SLPSFQLTNTST  188 (347)
T ss_dssp             EEEECCCCCTTGGGCEEEEEEEEEESSCCTTTEEEEECSS-CSEEECTTSGG-GCCSEEEEEEEE
T ss_pred             EEEEeeeeeccCCCcceeEEEEeccCcCChhhEEEEecCC-CceeecCccee-EccceEEeeEEe
Confidence            9999999999999999999999999999999999999765 4566655  43 799999999865

>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus}

Probab=100.00  E-value=4.1e-32  Score=198.71  Aligned_cols=129  Identities=15%  Similarity=0.249  Sum_probs=111.8

Q ss_pred             CeEEEEEEEcEEECCCC-ccCCCCCCCCcceeee-cceeecCCeEEeec-ccccCCCcccceEEEEeeCCEEEEecceeE
Q psy6970           1 KYEVEFLLQQQWHDPRL-EYFNQTTYDFLNAIHH-HSDVWLPDTYFIMH-GDFKDPLIPVHFALRIYRNGTVNYLMRRHL   77 (148)
Q Consensus         1 ~ft~~~~l~~~W~D~rL-~w~~p~~~~~i~~~~~-~~~iW~Pdi~~~n~-~~~~~~~~~~~~~~~i~~~G~V~~~~~~~~   77 (148)
                      +|++++|++|+|+|+|| +| +|++  |++.+++ .++||+||++++|+ ++......   ..++|++||+|.|.+++++
T Consensus        45 ~~~~~~~~~~~W~D~rL~~w-~~~~--~i~~~~~~~~~iW~PDi~~~N~~~~~~~~~~---~~v~i~~~G~V~~~~~~~~  118 (203)
T 2bj0_A           45 QVEVVLWTQASWKVPYYSSL-LSSS--SLDQVSLPVSKMWTPDLSFYNAIAAPELLSA---DRVVVSKDGSVIYVPSQRV  118 (203)
T ss_dssp             EEEEEEEEEEEEECGGGGGG-TTTS--SCSEEEEEGGGSCCCCEEETTCSSCCEECSC---CEEEEETTSEEEECCEEEE
T ss_pred             EEEEEEEEEeEEECcchhcc-CccC--CceEEEEchhhccCCCccccccccccccccc---eEEEEeCCcEEEEecceEE
Confidence            48999999999999999 99 9887  7888888 58999999999998 65332211   5899999999999999999


Q ss_pred             EEEccc-cccccCCCCCeeEEEEEcccccCCcEEEEEecCCCceeecCCccccccceecceEE
Q psy6970          78 ILSCQG-SLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKSPSLTTLNAYLITNRTI  139 (148)
Q Consensus        78 ~~~C~~-~l~~fPfD~q~C~l~~~S~~y~~~~v~l~~~~~~~~v~~~~~~~~l~~~~~~~~~~  139 (148)
                      +++|+| ++++  ||+|+|.|.|+||+|+.++|+|.|..+. ++...+.. .+++|.+.+...
T Consensus       119 ~~~C~m~dl~~--fD~Q~C~l~f~S~~y~~~~v~l~~~~~~-~~~~~~~~-~~~ew~l~~~~~  177 (203)
T 2bj0_A          119 RFTCDLINVDT--EPGATCRIKVGSWTHDNKQFALITGEEG-VVNIAEYF-DSPKFDLLSATQ  177 (203)
T ss_dssp             EEECCCTTTTS--SSCEEEEEEEEESSCCTTTEEEEECTTT-TSCTTTTC-CCSSEEEEEEEE
T ss_pred             EEEccccccCc--cccceeeEEEEcccccCcEEEEEecCCC-ccchhcce-ecCCEEEEEeEE
Confidence            999999 9998  9999999999999999999999997543 25555554 799999988865

>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.98  E-value=1.3e-32  Score=217.37  Aligned_cols=134  Identities=22%  Similarity=0.368  Sum_probs=112.4

Q ss_pred             CeEEEEEEEcEEECCCCccCCCCCCCCcceeee-cceeecCCeEEeecccccCCCcccceEEEEeeCCEEEEecceeEEE
Q psy6970           1 KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHH-HSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLIL   79 (148)
Q Consensus         1 ~ft~~~~l~~~W~D~rL~w~~p~~~~~i~~~~~-~~~iW~Pdi~~~n~~~~~~~~~~~~~~~~i~~~G~V~~~~~~~~~~   79 (148)
                      +|++++|++|+|+|+||+| +|++|++++.+++ .++||+||+++.|+++....... +..++|++||+|.|.++++.++
T Consensus        49 ~~~~~~~l~~~W~D~rL~w-~p~~~~~i~~l~v~~~~IW~PDi~~~N~~~~~~~~~~-~~~~~i~~~G~V~~~~~~~~~~  126 (370)
T 2bg9_A           49 IVETNVRLRQQWIDVRLRW-NPADYGGIKKIRLPSDDVWLPDLVLYNNADGDFAIVH-MTKLLLDYTGKIMWTPPAIFKS  126 (370)
T ss_dssp             EEEEEEEEEEEECCTTSCC-CTTTHHHHSSEEEEGGGSCCCCEEETTCCCSCEESCS-SCEEEECSSCCEEECCEEEEEE
T ss_pred             ceEEEEEEeeeeECCCccC-ChhhcCCccEEEechhhccCCcEeccccccccccccc-cceEEEECCeeEEEecceEEEE
Confidence            4899999999999999999 9999999999888 59999999999997543221111 4589999999999999999999


Q ss_pred             EccccccccCCCCCeeEEEEEcccccCCcEEEEEecCCCceeecCCccccccceecceEE
Q psy6970          80 SCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKSPSLTTLNAYLITNRTI  139 (148)
Q Consensus        80 ~C~~~l~~fPfD~q~C~l~~~S~~y~~~~v~l~~~~~~~~v~~~~~~~~l~~~~~~~~~~  139 (148)
                      +|+||+++||||+|+|.|+|+||+|+.+++++.|.++  .+...+.. ..++|.+.+.+.
T Consensus       127 ~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~--~~~~~~~~-~~~ew~l~~~~~  183 (370)
T 2bg9_A          127 YCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPESD--RPDLSTFM-ESGEWVMKDYRG  183 (370)
T ss_dssp             ECCCCTTSSSSSCEEEEEEEEESSCCTTTEEEECCCC--CCSTTSCC-TTCSSEEEEEEE
T ss_pred             ECCCCcCCCCCCcceeeEEEEEecccCcEEEEEecCC--Cccccccc-ccceEEEEcceE
Confidence            9999999999999999999999999999999998754  23333322 566777776653

>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.98  E-value=8e-33  Score=218.54  Aligned_cols=133  Identities=21%  Similarity=0.403  Sum_probs=109.0

Q ss_pred             CeEEEEEEEcEEECCCCccCCCCCCCCcceeee-cceeecCCeEEeecccccCCCcccceEEEEeeCCEEEEecceeEEE
Q psy6970           1 KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHH-HSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLIL   79 (148)
Q Consensus         1 ~ft~~~~l~~~W~D~rL~w~~p~~~~~i~~~~~-~~~iW~Pdi~~~n~~~~~~~~~~~~~~~~i~~~G~V~~~~~~~~~~   79 (148)
                      +|++++|++|+|+|+||+| +|++|+|++.+++ .++||+||+++.|+++...... ....+.|++||+|.|.++++.++
T Consensus        48 ~~~~~~~l~~~W~D~rL~w-~~~~~~~i~~l~v~~~~IW~PDi~~~N~~~~~~~~~-~~~~~~v~~~G~V~~~~~~~~~~  125 (370)
T 2bg9_E           48 ALTTNVWIEIQWNDYRLSW-NTSEYEGIDLVRIPSELLWLPDVVLENNVDGQFEVA-YYANVLVYNDGSMYWLPPAIYRS  125 (370)
T ss_dssp             EEEEEEEEEEEEECGGGCC-CTTTTTTCSCBCCCGGGSCCCCEEESSSCCSCCBSS-SSCCCEECSSSEEEECCEEEEEE
T ss_pred             ceeEeEEEeeEEECCCcCC-ChhhcCCeeEEeechhccCCCCEeeccccCCccccc-ccccEEEECCccEEEecCEEEEE
Confidence            4899999999999999999 9999999999888 5899999999999755322111 12357899999999999999999


Q ss_pred             EccccccccCCCCCeeEEEEEcccccCCcEEEEEecCCCceeecCCccccccceecce
Q psy6970          80 SCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKSPSLTTLNAYLITNR  137 (148)
Q Consensus        80 ~C~~~l~~fPfD~q~C~l~~~S~~y~~~~v~l~~~~~~~~v~~~~~~~~l~~~~~~~~  137 (148)
                      +|+||+++||||+|+|.|+|+||+|+.+++++.|..++ .+....- ....+|.+.+.
T Consensus       126 ~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~l~~~~~~-~~~~~~~-~~~~eW~l~~~  181 (370)
T 2bg9_E          126 TCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQLSAEE-GIDPEDF-TENGEWTIRHR  181 (370)
T ss_dssp             CCCCSSCSSSSSCCBCCEEEEESSSCTTSCCEECCCSC-CCGGGSC-CTTSSEEEEEC
T ss_pred             ECcccccCCCCCeEEEEEEEEeeccccceeEEEecCCC-cccHhhc-ccccEEEEecc
Confidence            99999999999999999999999999999999997653 2222221 13456666554

>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.98  E-value=2.2e-32  Score=216.10  Aligned_cols=134  Identities=20%  Similarity=0.413  Sum_probs=110.2

Q ss_pred             CeEEEEEEEcEEECCCCccCCCCCCCCcceeee-cceeecCCeEEeecccccCCCcccceEEEEeeCCEEEEecceeEEE
Q psy6970           1 KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHH-HSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLIL   79 (148)
Q Consensus         1 ~ft~~~~l~~~W~D~rL~w~~p~~~~~i~~~~~-~~~iW~Pdi~~~n~~~~~~~~~~~~~~~~i~~~G~V~~~~~~~~~~   79 (148)
                      +|++++|++|+|+|+||+| +|++|++++.+++ .++||+||+++.|+++...... ....+.|++||+|.|.++++.++
T Consensus        49 ~~~~~~~l~~~W~D~rL~w-~~~~~~~i~~l~v~~~~IW~PDi~~~N~~~~~~~~~-~~~~~~v~~~G~V~~~~~~~~~~  126 (370)
T 2bg9_B           49 EMTTSVFLNLAWTDYRLQW-DPAAYEGIKDLSIPSDDVWQPDIVLMNNNDGSFEIT-LHVNVLVQHTGAVSWHPSAIYRS  126 (370)
T ss_dssp             EEEEEEECEEEEECTTSCC-CTTTTSSCSEEEEESSSSCCCCEEESSCCCSCEESS-SSCEEEEETTSEEEECCEEEEEE
T ss_pred             ceEEEEEEeeeeECcccCc-CccccCCeeEEEechhhccCCCcccccccccccccc-ccceEEEeCCceEEEEecceEEE
Confidence            4899999999999999999 9999999999988 5899999999999755321111 13478899999999999999999


Q ss_pred             EccccccccCCCCCeeEEEEEcccccCCcEEEEE-ecCCCceeecCCccccccceecceEE
Q psy6970          80 SCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVW-KNDEDTLRKSPSLTTLNAYLITNRTI  139 (148)
Q Consensus        80 ~C~~~l~~fPfD~q~C~l~~~S~~y~~~~v~l~~-~~~~~~v~~~~~~~~l~~~~~~~~~~  139 (148)
                      +|+||+++||||+|+|.|+|+||+|+.+++++.| .++  .+....- ....+|.+.+.+.
T Consensus       127 ~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~l~~~~~~--~~~~~~~-~~~~eW~l~~~~~  184 (370)
T 2bg9_B          127 SCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHALDA--MINQDAF-TENGQWSIEHKPS  184 (370)
T ss_dssp             CCCCTTCSSSTTCCCCEEEEEESSCCBTSCEEECSCCC--CCSTTSC-CTTCSSEECCCCE
T ss_pred             EccCcccCCCCCceeeeEEEEeccccccEEEEEeccCC--ccccccc-cccceEEEeccce
Confidence            9999999999999999999999999999999999 432  2332222 2456677666543

>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.98  E-value=3.4e-32  Score=214.90  Aligned_cols=111  Identities=22%  Similarity=0.420  Sum_probs=99.8

Q ss_pred             CeEEEEEEEcEEECCCCccCCCCCCCCcceeee-cceeecCCeEEeecccccCCCcccceEEEEeeCCEEEEecceeEEE
Q psy6970           1 KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHH-HSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLIL   79 (148)
Q Consensus         1 ~ft~~~~l~~~W~D~rL~w~~p~~~~~i~~~~~-~~~iW~Pdi~~~n~~~~~~~~~~~~~~~~i~~~G~V~~~~~~~~~~   79 (148)
                      +|++++|++|+|+|+||+| +|++|++++.+++ .++||+||+++.|+++....... ...+.|++||+|.|.+|++.++
T Consensus        51 ~~~~~~~l~~~W~D~rL~w-~~~~~~~i~~l~v~~~~IW~PDi~~~N~~~~~~~~~~-~~~~~i~~~G~V~~~~~~~~~~  128 (369)
T 2bg9_C           51 TLTTNVWMDHAWYDHRLTW-NASEYSDISILRLRPELIWIPDIVLQNNNDGQYNVAY-FCNVLVRPNGYVTWLPPAIFRS  128 (369)
T ss_dssp             EEEEEEEEEEEEECTTTCC-CCCCCCTCSCEEECGGGSCCCCEEETTTCSSCCBSSS-SCCEEECSSSEEEECCEEEEEE
T ss_pred             ceEEEEEEeeeeECCCccc-CccccCCeeEEEecHHhccCCcEeccccccccccccc-cccEEEECCccEEEecCEEEEE
Confidence            4899999999999999999 9999999999988 58999999999997653221111 2367899999999999999999


Q ss_pred             EccccccccCCCCCeeEEEEEcccccCCcEEEEE
Q psy6970          80 SCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVW  113 (148)
Q Consensus        80 ~C~~~l~~fPfD~q~C~l~~~S~~y~~~~v~l~~  113 (148)
                      +|+||+++||||+|+|.|+|+||+|+.+++++.|
T Consensus       129 ~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~l~~  162 (369)
T 2bg9_C          129 SCPINVLYFPFDWQNCSLKFTALNYNANEISMDL  162 (369)
T ss_dssp             CCSCGGGSSSTTCCEEEEEEEESSCCTTTCEEEC
T ss_pred             ECcCcccCCCCCceEeeEEEEEecccCceEEEEE
Confidence            9999999999999999999999999999999998

>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A*

Probab=99.98  E-value=4.4e-32  Score=201.95  Aligned_cols=129  Identities=17%  Similarity=0.266  Sum_probs=107.2

Q ss_pred             CeEEEEEEEcEEECCCCccCCCCCCCCcceeee-cceeecCCeEEeecccccCCCcccceEEEEeeCCEEEEecceeEEE
Q psy6970           1 KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHH-HSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLIL   79 (148)
Q Consensus         1 ~ft~~~~l~~~W~D~rL~w~~p~~~~~i~~~~~-~~~iW~Pdi~~~n~~~~~~~~~~~~~~~~i~~~G~V~~~~~~~~~~   79 (148)
                      +|++++|++|+|+|+||+| +|++|++++.+++ .++||+||++++|+++...... ....++|+++|+|.|.+++++++
T Consensus        58 ~~t~~~~l~~~W~D~rL~w-np~~~~~i~~i~l~~~~IW~PDi~l~N~~~~~~~~~-~~~~v~v~~~G~V~~~~~~~~~s  135 (230)
T 4afh_A           58 IGTFKAIVKLSWVDTILRW-DPEPPFDFQKIEISPDEIWTPDIKLFNSVDLDMTLD-RTTQAIVFSNGTVLWIPPAVLKV  135 (230)
T ss_dssp             EEEEEEEEEEEEECGGGCC-CCCTTSCCSEEEECGGGSCCCCEEETTCSSSSCEEC-TTSCEEEETTSEEEECCEEEEEE
T ss_pred             EEEEEEEEeeEEECccccC-CcccCCCeeEEEeccCCEECCcEEEEeccccccccc-ccceEEEEcCCEEEEecCEEEEE
Confidence            4899999999999999999 9999999999998 5999999999999765332211 23479999999999999999999


Q ss_pred             EccccccccCCCCCeeEEEEEcccccCCcEEEEEecCCCceeecCCccccccceecceEE
Q psy6970          80 SCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKSPSLTTLNAYLITNRTI  139 (148)
Q Consensus        80 ~C~~~l~~fPfD~q~C~l~~~S~~y~~~~v~l~~~~~~~~v~~~~~~~~l~~~~~~~~~~  139 (148)
                      +|+|     |||+|+|.|+|+||+|+.++|+|.|..+...+.. . ...-. |.+.+...
T Consensus       136 ~C~m-----PfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~d~-~-~~~n~-W~l~~~~~  187 (230)
T 4afh_A          136 LCVS-----QDDVDSCHFQFGSWVYSVDEVDIHFMDDKAEVLL-D-FYQDS-LEILENSA  187 (230)
T ss_dssp             EEEE-----ETTEEEEEEEEEESSCCTTTEEEEEGGGCCSCBC-T-TCCCC-CCEEEEEE
T ss_pred             ECCC-----CCCcccCCEeeccccccCceEEEEECCCCcccce-e-eecCc-EEEEEEEE
Confidence            9999     9999999999999999999999999875444444 2 22344 76666543

>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A

Probab=99.97  E-value=1.1e-31  Score=217.12  Aligned_cols=133  Identities=22%  Similarity=0.379  Sum_probs=110.1

Q ss_pred             CeEEEEEEEcEEECCCCccCCCCCCCCcceeee-cceeecCCeEEeecccccCCCcccceEEEEeeCCEEEEecceeEEE
Q psy6970           1 KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHH-HSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLIL   79 (148)
Q Consensus         1 ~ft~~~~l~~~W~D~rL~w~~p~~~~~i~~~~~-~~~iW~Pdi~~~n~~~~~~~~~~~~~~~~i~~~G~V~~~~~~~~~~   79 (148)
                      +|++++|++|+|+|+||+| ||++|+|++.+++ .++||+||++++|+++...... ....++|++||+|.|.++++.++
T Consensus        73 ~~t~~~~l~~~W~D~rL~W-np~~y~gi~~l~vp~~~IW~PDi~l~N~~d~~~~~~-~~~~v~v~~dG~V~~~~~~~~~s  150 (461)
T 4aq5_A           73 IVETNVRLRQQWIDVRLRW-NPADYGGIKKIRLPSDDVWLPDLVLYNNADGDFAIV-HMTKLLLDYTGKIMWTPPAIFKS  150 (461)
T ss_dssp             EEEEEEEEEEEECCTTCBC-CTTTHHHHSSEEEEGGGSCCCCEEESSCCCSCCTTC-SSCEEEECSBCCEEECCEEEEEE
T ss_pred             EEEEEEEEeeeeECcccCC-ChhhcCCccEEEecCCCEECCceeeecccccccccc-cccceEEcCCccEEEeccccccc
Confidence            4899999999999999999 9999999999988 5999999999999765332221 23479999999999999999999


Q ss_pred             EccccccccCCCCCeeEEEEEcccccCCcEEEEEecCCCceeecCCccccccceecceE
Q psy6970          80 SCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKSPSLTTLNAYLITNRT  138 (148)
Q Consensus        80 ~C~~~l~~fPfD~q~C~l~~~S~~y~~~~v~l~~~~~~~~v~~~~~~~~l~~~~~~~~~  138 (148)
                      +|+||+++||||+|+|+++|+||+|+.+++++.+.+.  .+....-. ...+|.+.+..
T Consensus       151 ~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~--~~~l~~~~-~~~eW~l~~~~  206 (461)
T 4aq5_A          151 YCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPESD--RPDLSTFM-ESGEWVMKDYR  206 (461)
T ss_dssp             ECCCCGGGSSSSCEEEEEEEEESSCCTTTEEEECCCC--CCSGGGCC-TTCSSEEEEEE
T ss_pred             cccccccCCCCccCccCeEEeccccCCceEEEEeccc--cccHHhhh-ccCceEEeeee
Confidence            9999999999999999999999999999999997643  23222221 34566666544

>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*

Probab=99.97  E-value=6e-31  Score=193.54  Aligned_cols=127  Identities=19%  Similarity=0.255  Sum_probs=109.7

Q ss_pred             CeEEEEEEEcEEECCCCccCCCCCCCCcceeee-cceeecCCeEEeecccccCCCcccceEEEEeeCCEEEEecceeEEE
Q psy6970           1 KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHH-HSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLIL   79 (148)
Q Consensus         1 ~ft~~~~l~~~W~D~rL~w~~p~~~~~i~~~~~-~~~iW~Pdi~~~n~~~~~~~~~~~~~~~~i~~~G~V~~~~~~~~~~   79 (148)
                      +|++++|++|+|+|+||+| +|++|++  .+++ .++||+||+++.|+++.. .. .....++|++||+|.+.+++++++
T Consensus        48 ~~~~~~~~~~~W~D~rL~w-~~~~~~~--~l~~~~~~iW~PDi~~~N~~~~~-~~-~~~~~~~i~~~G~V~~~~~~~~~~  122 (211)
T 1uw6_A           48 EVDVVFWQQTTWSDRTLAW-NSSHSPD--QVSVPISSLWVPDLAAYNAISKP-EV-LTPQLARVVSDGEVLYMPSIRQRF  122 (211)
T ss_dssp             EEEEEEEEEEEEECGGGCC-CCTTSCS--EEEEEGGGSCCCCEEETTBCSCC-EE-CSCCEEEEETTSEEEECCEEEEEE
T ss_pred             EEEEEEEEEeEeECccccc-ChhhcCC--eEEccHHHccCCCEeeecccccc-cc-ceeeEEEEeCCceEEEeCCEEEEE
Confidence            4899999999999999999 9999998  6777 589999999999976544 22 223799999999999999999999


Q ss_pred             Ecc---ccccccCCCCCeeEEEEEcccccCCcEEEEEecCCCceeecCCccc-cccceecceEE
Q psy6970          80 SCQ---GSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKSPSLTT-LNAYLITNRTI  139 (148)
Q Consensus        80 ~C~---~~l~~fPfD~q~C~l~~~S~~y~~~~v~l~~~~~~~~v~~~~~~~~-l~~~~~~~~~~  139 (148)
                      +|+   |+++    |+|+|.|.|+||+|+.++|++.|..+  ++...+.. . +++|.+.+...
T Consensus       123 ~C~~~~mdl~----D~Q~C~l~f~S~~y~~~~i~l~~~~~--~~~~~~~~-~~~~ew~l~~~~~  179 (211)
T 1uw6_A          123 SCDVSGVDTE----SGATCRIKIGSWTHHSREISVDPTTE--NSDDSEYF-SQYSRFEILDVTQ  179 (211)
T ss_dssp             ECCCTTTTSS----SCEEEEEEEEESSCCTTTEEEEECCC--SSCTTTTS-CTTSSEEEEEEEE
T ss_pred             ECCCCCCCCC----cceEeEEEEEcccccCceEEEEeccc--ccchhhhc-ccCCCEEEEeeEE
Confidence            999   9999    99999999999999999999999764  45544443 7 89999888764

>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ...

Probab=99.97  E-value=1.7e-31  Score=198.62  Aligned_cols=129  Identities=19%  Similarity=0.307  Sum_probs=110.6

Q ss_pred             CeEEEEEEEcEEECCCCccCCCCCCCCcceeee-cceeecCCeEEeecccccCCCcccceEEEEeeCCEEEEecceeEEE
Q psy6970           1 KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHH-HSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLIL   79 (148)
Q Consensus         1 ~ft~~~~l~~~W~D~rL~w~~p~~~~~i~~~~~-~~~iW~Pdi~~~n~~~~~~~~~~~~~~~~i~~~G~V~~~~~~~~~~   79 (148)
                      +|++++|++|+|+|+||+| +|++|+++..+++ .++||+||++++|+++......  +..++|+++|+|.|.+|+++++
T Consensus        58 ~~~~~~~l~~~W~D~rL~w-~~~~y~~i~~l~~~~~~IW~PDi~l~N~~~~~~~~~--~~~v~i~~~G~V~~~~~~~~~~  134 (228)
T 2wn9_A           58 EVDLVYYEQQRWKLNSLMW-DPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLS--PQIAVVTHDGSVMFIPAQRLSF  134 (228)
T ss_dssp             EEEEEEEEEEEEEEEEEEC-CGGGGTTCCEEEEEGGGSCCCCEEESSBSSCCEECS--CCEEEEETEEEEEECCEEEEEE
T ss_pred             EEEEEEEEEEEEECCCccC-CchhcCCeeEEEecHHHccCCceecccccccccccc--cceEEEeCCeEEEEeCCEEEEE
Confidence            4899999999999999999 9999999999988 5899999999999765332221  5799999999999999999999


Q ss_pred             Ecc---ccccccCCCCCeeEEEEEcccccCCcEEEEEecCCCceeecCCccccccceecceEE
Q psy6970          80 SCQ---GSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKSPSLTTLNAYLITNRTI  139 (148)
Q Consensus        80 ~C~---~~l~~fPfD~q~C~l~~~S~~y~~~~v~l~~~~~~~~v~~~~~~~~l~~~~~~~~~~  139 (148)
                      +|+   |+++    |+|+|.|+|+||+|+.++|++.|..+  .+....- ...++|.+.+...
T Consensus       135 ~C~~~~mdl~----D~Q~C~l~f~Sw~y~~~~i~l~~~~~--~~~~~~~-~~~~ew~l~~~~~  190 (228)
T 2wn9_A          135 MCDPTGVDSE----EGATCAVKFGSWVYSGFEIDLKTDTD--QVDLSSY-YASSKYEILSATQ  190 (228)
T ss_dssp             ECCCTTTTST----TCEEEEEEEEESSCCTTTEEEECSCS--BCBCTTC-CTTCSEEEEEEEE
T ss_pred             ECCCCCCCCC----cCcEeeEEEEeecccccEEEEEecCC--ccchhhc-eecCCEEEEEEEE
Confidence            999   9999    99999999999999999999999764  3444333 2677888877654

>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B

Probab=99.97  E-value=4.6e-32  Score=220.97  Aligned_cols=115  Identities=23%  Similarity=0.457  Sum_probs=102.2

Q ss_pred             CeEEEEEEEcEEECCCCccCCCCCCCCcceeee-cceeecCCeEEeecccccCCCcccceEEEEeeCCEEEEecceeEEE
Q psy6970           1 KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHH-HSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLIL   79 (148)
Q Consensus         1 ~ft~~~~l~~~W~D~rL~w~~p~~~~~i~~~~~-~~~iW~Pdi~~~n~~~~~~~~~~~~~~~~i~~~G~V~~~~~~~~~~   79 (148)
                      +|++++|++|+|+|+||+| ||++|+|++.+++ .++||+||++++|+++...... ...++.|++||+|.|.++++.++
T Consensus        73 ~~t~~v~l~~~W~D~rL~W-np~~y~gi~~l~v~~~~IW~PDi~l~N~~d~~~~~~-~~~nv~v~~~G~V~~~~~~~~~s  150 (493)
T 4aq5_B           73 EMTTSVFLNLAWTDYRLQW-DPAAYEGIKDLSIPSDDVWQPDIVLMNNNDGSFEIT-LHVNVLVQHTGAVSWHPSAIYRS  150 (493)
T ss_dssp             EEEEEEECEEEEECTTCCC-CHHHHSSCSCEEECSCSSCCCCCEESSCCCSCEESS-SSSCEEECTTSEEEECCEEEEEE
T ss_pred             EEEEEEEeecceECcccCC-ChhhcCCeeEEecccccCccCcEEEecccccccccc-cccceEEecCCCEEEeeeeeeee
Confidence            4899999999999999999 9999999999988 5899999999999755322111 12367899999999999999999


Q ss_pred             EccccccccCCCCCeeEEEEEcccccCCcEEEEEecCC
Q psy6970          80 SCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDE  117 (148)
Q Consensus        80 ~C~~~l~~fPfD~q~C~l~~~S~~y~~~~v~l~~~~~~  117 (148)
                      +|+||+++||||+|+|+|+|+||+|+.+++++.|..++
T Consensus       151 ~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~  188 (493)
T 4aq5_B          151 SCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHALDA  188 (493)
T ss_dssp             CCSCTTCSSSTTCCCCEEEEECSSCCBTSCEEECCCCC
T ss_pred             cccccccCCCccceeEEEEEeeecCccccEEEEeccCC
Confidence            99999999999999999999999999999999997654

>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C

Probab=99.97  E-value=3.5e-31  Score=216.98  Aligned_cols=115  Identities=22%  Similarity=0.422  Sum_probs=100.0

Q ss_pred             CeEEEEEEEcEEECCCCccCCCCCCCCcceeee-cceeecCCeEEeecccccCCCcccceEEEEeeCCEEEEecceeEEE
Q psy6970           1 KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHH-HSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLIL   79 (148)
Q Consensus         1 ~ft~~~~l~~~W~D~rL~w~~p~~~~~i~~~~~-~~~iW~Pdi~~~n~~~~~~~~~~~~~~~~i~~~G~V~~~~~~~~~~   79 (148)
                      +|++++|++|+|+|+||+| ||++|+|++.+++ .++||+||++++|+++...... ...++.|++||+|.|.++++.++
T Consensus        72 ~~t~~vwl~q~W~D~RL~W-np~~y~gi~~l~vp~~~IW~PDi~l~N~~d~~~~~~-~~~nv~V~~dG~V~~~~~~~~~s  149 (522)
T 4aq5_C           72 TLTTNVWMDHAWYDHRLTW-NASEYSDISILRLRPELIWIPDIVLQNNNDGQYNVA-YFCNVLVRPNGYVTWLPPAIFRS  149 (522)
T ss_dssp             EEEEEEEEEEEEECTTCCC-CCCCCCTCSCEEECGGGSCCCCEEETTTCSSCCBSC-SSCCEEECSSSEEEECCEEEEEE
T ss_pred             EEEEEEEEeeeEeCcccCC-CchhcCCceEEeeccCCEECCcEeccccccCCcccc-ccceEEEeCCccEEEEccccccc
Confidence            4899999999999999999 9999999999998 5899999999999765332111 12367899999999999999999


Q ss_pred             EccccccccCCCCCeeEEEEEcccccCCcEEEEEecCC
Q psy6970          80 SCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDE  117 (148)
Q Consensus        80 ~C~~~l~~fPfD~q~C~l~~~S~~y~~~~v~l~~~~~~  117 (148)
                      +|+||+++||||+|+|.|+|+||+|+.++|++.|..++
T Consensus       150 sC~mdl~~FPfD~Q~C~L~f~S~~Y~~~~v~l~~~~~~  187 (522)
T 4aq5_C          150 SCPINVLYFPFDWQNCSLKFTALNYNANEISMDLMTDT  187 (522)
T ss_dssp             CCCCTTTSCSTTCCEEEEEEEETTCCTTTCCEEC----
T ss_pred             ccccccCcCCCcCceEeEEEecccccCceeEEEeccCc
Confidence            99999999999999999999999999999999997653

>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E

Probab=99.97  E-value=1.5e-31  Score=217.78  Aligned_cols=115  Identities=22%  Similarity=0.431  Sum_probs=102.0

Q ss_pred             CeEEEEEEEcEEECCCCccCCCCCCCCcceeee-cceeecCCeEEeecccccCCCcccceEEEEeeCCEEEEecceeEEE
Q psy6970           1 KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHH-HSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLIL   79 (148)
Q Consensus         1 ~ft~~~~l~~~W~D~rL~w~~p~~~~~i~~~~~-~~~iW~Pdi~~~n~~~~~~~~~~~~~~~~i~~~G~V~~~~~~~~~~   79 (148)
                      +|++++|++|+|+|+||+| ||++|+|++.+++ .++||+||++++|+++....... ..++.|++||+|.|.++++.++
T Consensus        48 ~~t~~v~l~~~W~D~rL~W-np~~y~gi~~l~v~~~~IW~PDi~l~N~~d~~~~~~~-~~nv~v~~~G~V~~~~~~~~~s  125 (488)
T 4aq5_E           48 ALTTNVWIEIQWNDYRLSW-NTSEYEGIDLVRIPSELLWLPDVVLENNVDGQFEVAY-YANVLVYNDGSMYWLPPAIYRS  125 (488)
T ss_dssp             BEEEEEEEEEEEECCTTCC-CTTTTTTCSCCCCCTTSSCCCCEECSSSCCSCCBSCS-SSCCCBCTTSEEEECCEEBCEE
T ss_pred             eeeeeeeeeeEEECcccCc-CchhcCCceEEecCccCEECCceehhccccccccccc-cccEEEeCCceEEEecceeEEe
Confidence            4899999999999999999 9999999999988 58999999999997653221111 2356799999999999999999


Q ss_pred             EccccccccCCCCCeeEEEEEcccccCCcEEEEEecCC
Q psy6970          80 SCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDE  117 (148)
Q Consensus        80 ~C~~~l~~fPfD~q~C~l~~~S~~y~~~~v~l~~~~~~  117 (148)
                      +|+|++++||||+|+|.|+|+||+|+.++|++.|..++
T Consensus       126 ~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~  163 (488)
T 4aq5_E          126 TCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQLSAEE  163 (488)
T ss_dssp             CCCCSSSSSSSSCCCCCEEEEESSSCSSSCCEECCCSC
T ss_pred             ecccccccCCCcCceeeEEeeeeccccceEEEEeccCC
Confidence            99999999999999999999999999999999998654

>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*

Probab=99.97  E-value=3.2e-30  Score=200.21  Aligned_cols=128  Identities=18%  Similarity=0.275  Sum_probs=105.8

Q ss_pred             CeEEEEEEEcEEECCCCccCCCCCCCCccee--------ee-cceeecCCeEEeecccccCCCcccceEEEEeeCCEEEE
Q psy6970           1 KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAI--------HH-HSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNY   71 (148)
Q Consensus         1 ~ft~~~~l~~~W~D~rL~w~~p~~~~~i~~~--------~~-~~~iW~Pdi~~~n~~~~~~~~~~~~~~~~i~~~G~V~~   71 (148)
                      +|++++|++|+|+|+||+| +     +++.+        ++ .++||+||+++.|+.+...   ..+..++|++||+|.+
T Consensus        32 ~~t~~~~l~~~W~D~rL~~-~-----~~~~l~l~~~~~~~ip~~~IW~Pdi~l~N~~~~~~---~~~~~~~i~~~G~V~~  102 (322)
T 3rqw_A           32 TYKVDGYIVAQWTGKPRKT-P-----GDKPLIVENTQIERWINNGLWVPALEFINVVGSPD---TGNKRLMLFPDGRVIY  102 (322)
T ss_dssp             EEEEEEEEEEEEECSCCCC-S-----TTSCEEEETHHHHHHHHTTCCCCCEEETTBSSCCE---EEEEEEEECTTSEEEE
T ss_pred             EEEEEEEEeeEEechhhCC-C-----CCCceeecchhhcccccccccCCcEEEEcccCccc---ccceeEEEeCCcCEEE
Confidence            4899999999999999999 4     34443        34 5899999999999765443   3467999999999999


Q ss_pred             ecceeEEEEccccccccCCCCCeeEEEEEcccccCCcEEEEEecCCCceeecCCcccccccee-cceEEe
Q psy6970          72 LMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKSPSLTTLNAYLI-TNRTIS  140 (148)
Q Consensus        72 ~~~~~~~~~C~~~l~~fPfD~q~C~l~~~S~~y~~~~v~l~~~~~~~~v~~~~~~~~l~~~~~-~~~~~~  140 (148)
                      .+|++.++.|+||+++||||+|+|.++|+||+|+.+++++.|.++...... + . +++||.+ .+.+..
T Consensus       103 ~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~-~-~-~~~ew~l~~~~~~~  169 (322)
T 3rqw_A          103 NARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRFSDIQVYTENID-N-E-EIDEWWIRGKASTH  169 (322)
T ss_dssp             EEEEEEEEECCCCCTTTTSCEEEEEEEEEESSCSSEEEEEEEEECCSCSSS-S-C-SSSSEEECCSCEEC
T ss_pred             eeceeEEEeccccccCCCCCCcEEEEEEEEcccCcceEEEEECCCcccccC-C-C-CCCceEEEeeeEEE
Confidence            999999999999999999999999999999999999999999754311111 2 2 6889999 776643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	148
d1uw6a_	208	b.96.1.1 (A:) Acetylcholine binding protein (ACHBP	4e-08

>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]} Length = 208

class: All beta proteins
fold: Nicotinic receptor ligand binding domain-like
superfamily: Nicotinic receptor ligand binding domain-like
family: Nicotinic receptor ligand binding domain-like
domain: Acetylcholine binding protein (ACHBP)
species: Great pond snail (Lymnaea stagnalis) [TaxId: 6523]

 Score = 48.2 bits (114), Expect = 4e-08
 Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 5/116 (4%)

Query: 2   YEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHHHSDVWLPDTYFIMHGDFKDPLIPVHFAL 61
            +V F  Q  W D  L + +  + D ++     S +W+PD          + L P     
Sbjct: 49  VDVVFWQQTTWSDRTLAWNSSHSPDQVS--VPISSLWVPDLAAYNAISKPEVLTPQL--A 104

Query: 62  RIYRNGTVNYLMRRHLILSCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDE 117
           R+  +G V Y+       SC  S  +      TC   + S ++    I      + 
Sbjct: 105 RVVSDGEVLYMPSIRQRFSCDVSG-VDTESGATCRIKIGSWTHHSREISVDPTTEN 159

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	148
d1uw6a_	208	Acetylcholine binding protein (ACHBP) {Great pond	99.97

>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]}

class: All beta proteins
fold: Nicotinic receptor ligand binding domain-like
superfamily: Nicotinic receptor ligand binding domain-like
family: Nicotinic receptor ligand binding domain-like
domain: Acetylcholine binding protein (ACHBP)
species: Great pond snail (Lymnaea stagnalis) [TaxId: 6523]

Probab=99.97  E-value=1.6e-30  Score=189.18  Aligned_cols=131  Identities=19%  Similarity=0.200  Sum_probs=106.8

Q ss_pred             CeEEEEEEEcEEECCCCccCCCCCCCCcceeee-cceeecCCeEEeecccccCCCcccceEEEEeeCCEEEEecceeEEE
Q psy6970           1 KYEVEFLLQQQWHDPRLEYFNQTTYDFLNAIHH-HSDVWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLIL   79 (148)
Q Consensus         1 ~ft~~~~l~~~W~D~rL~w~~p~~~~~i~~~~~-~~~iW~Pdi~~~n~~~~~~~~~~~~~~~~i~~~G~V~~~~~~~~~~   79 (148)
                      +|++++|++|+|+|+||+| ||++|+++.  .+ .++||+||++++|+.+....  .....+.|+++|+|.|.+++++++
T Consensus        48 ~~~~~~~~~~~W~D~rL~W-np~~~~~~~--~v~~~~iW~PDi~l~n~~~~~~~--~~~~~~~v~~~G~V~~~~~~~~~~  122 (208)
T d1uw6a_          48 EVDVVFWQQTTWSDRTLAW-NSSHSPDQV--SVPISSLWVPDLAAYNAISKPEV--LTPQLARVVSDGEVLYMPSIRQRF  122 (208)
T ss_dssp             EEEEEEEEEEEEECGGGCC-CCTTSCSEE--EEEGGGSCCCCEEETTBCSCCEE--CSCCEEEEETTSEEEECCEEEEEE
T ss_pred             EEEEEEEEEEEEECCcccc-ccccCCcee--ccchhccccccEEEEEEcccccc--ccceEEEEEeCCcEEEEecEEEEE
Confidence            4789999999999999999 999988764  45 58999999999997543322  224578999999999999999999


Q ss_pred             EccccccccCCCCCeeEEEEEcccccCCcEEEEEecCCCceeecCCccccccceecceEE
Q psy6970          80 SCQGSLHIFPFDDPTCSFAMESISYEQSAIEYVWKNDEDTLRKSPSLTTLNAYLITNRTI  139 (148)
Q Consensus        80 ~C~~~l~~fPfD~q~C~l~~~S~~y~~~~v~l~~~~~~~~v~~~~~~~~l~~~~~~~~~~  139 (148)
                      .|.|++..|| |+|+|.|.|+||+|+..+|.+.+..++...  .......++|.|.+.++
T Consensus       123 ~C~~~~~~f~-d~Q~C~l~fgSw~y~~~~i~l~~~~~~~~~--~~~~~~~~eW~l~~~~~  179 (208)
T d1uw6a_         123 SCDVSGVDTE-SGATCRIKIGSWTHHSREISVDPTTENSDD--SEYFSQYSRFEILDVTQ  179 (208)
T ss_dssp             ECCCTTTTSS-SCEEEEEEEEESSCCTTTEEEEECCCSSCT--TTTSCTTSSEEEEEEEE
T ss_pred             eccccccCCc-ceEEEEEEEeCceeccceEEEeeccCCCcc--ccccccCCCEEEEEeEE
Confidence            9999998888 899999999999999999999987654322  22223567888887754