Psyllid ID: psy6979

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------
Protein Sequence
MLVRQQIDYTIFIIEQEVEVPTVPWDKDQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEKANPQSSFFPHSISEGHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLPYASLFGGVSNIY
Secondary Structure (PSIPRED)
ccccccccccccccccEEcEEEEcHHHHHHHcccccccccccccccHHHHHHHHccEEEcccccccEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHccccEEEEEcccccccccccccccccccEEEEEEcccccccccccccEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHEHEEHHHEEEccccccHHHHcccccccccccccHHHHHHHHHHHcccccEcccccccEEEEcccccccccccEEEEEEEEcccccccHHHHHHHHHHHHHHHccccEEEEEcccEEEcEcccccccccccEEcccEEHHHccEcccccccccEEccc
Coil and Loop (DISEMBL)
MLVRQQIDYTIFIIEQevevptvpwdkdqlvngfsneywgwggedddmSNRVKAAGLqiiryppdiakYSMLRHrkekanpqssffphsiseghpfnraslfnvGYAEAikirefdcfifhdvdlipeddrnlytcpgmprhmsvavdsmnyrlpyaslfggvsniy
Flexible Loop (DISEMBL)
mlvrqqidYTIFiieqevevptvpwdkdqlVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEKANPQSSFFPHSISEGHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLPyaslfggvsniy
Low Complexity Region (SEG)
MLVRQQIDYTIFIIEQEVEVPTVPWDKDQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEKANPQSSFFPHSISEGHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLPYASLFGGVSNIY
Disordered region (IsUnstruct)
****QQIDYTIFIIEQEVEVPTVPWDKDQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSM**********************HPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLPYASLFGGV****
Disordered Region (DISOPRED)
MLVRQQIDYTIFIIEQEVEVPTVPWDKDQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEKANPQSSFFPHSISEGHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLPYASLFGGVSNIY
Disordered Region (DISEMBL)
MLVRQQIDYTIFIIEQEVEVPTVPWDKDQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEKANPQSSFFPHSISEGHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLPYASLFGGVSNIY
Disordered Region (DISPRO)
MLVRQQIDYTIFIIEQEVEVPTVPWDKDQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEKANPQSSFFPHSISEGHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLPYASLFGGVSNIY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLVRQQIDYTIFIIEQEVEVPTVPWDKDQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEKANPQSSFFPHSISEGHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLPYASLFGGVSNIY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	167	2.2.26 [Sep-21-2011]
Q9GUM2	383	Beta-1,4-N-acetylgalactos	yes	N/A	0.413	0.180	0.647	1e-23
A8Y1P7	384	Beta-1,4-N-acetylgalactos	N/A	N/A	0.425	0.184	0.633	5e-23
O60513	344	Beta-1,4-galactosyltransf	yes	N/A	0.455	0.220	0.565	2e-20
O88419	382	Beta-1,4-galactosyltransf	yes	N/A	0.538	0.235	0.5	4e-20
Q9WVK5	382	Beta-1,4-galactosyltransf	yes	N/A	0.538	0.235	0.5	4e-20
Q9JMK0	388	Beta-1,4-galactosyltransf	no	N/A	0.574	0.247	0.484	5e-20
O43286	388	Beta-1,4-galactosyltransf	no	N/A	0.538	0.231	0.5	7e-20
Q80WN7	344	Beta-1,4-galactosyltransf	no	N/A	0.425	0.206	0.591	7e-20
Q66HH1	344	Beta-1,4-galactosyltransf	no	N/A	0.425	0.206	0.591	8e-20
Q9JJ04	344	Beta-1,4-galactosyltransf	no	N/A	0.425	0.206	0.577	1e-19

>sp|Q9GUM2|BRE4_CAEEL Beta-1,4-N-acetylgalactosaminyltransferase bre-4 OS=Caenorhabditis elegans GN=bre-4 PE=1 SV=1

 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 46/71 (64%), Positives = 57/71 (80%)

Query: 96  FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 155
           FNR  L NVGY  A ++  + CFIFHDVDL+PEDDRNLYTCP  PRHMSVA+D  NY+LP
Sbjct: 194 FNRGKLMNVGYDVASRLYPWQCFIFHDVDLLPEDDRNLYTCPIQPRHMSVAIDKFNYKLP 253

Query: 156 YASLFGGVSNI 166
           Y+++FGG+S +
Sbjct: 254 YSAIFGGISAL 264

Catalyzes the transfer of galactose onto proteins or lipids. Required for susceptibility to pore-forming crystal toxins in conjunction with bre-1, bre-2, bre-3 and bre-5.
Caenorhabditis elegans (taxid: 6239)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -

>sp|A8Y1P7|BRE4_CAEBR Beta-1,4-N-acetylgalactosaminyltransferase bre-4 OS=Caenorhabditis briggsae GN=bre-4 PE=3 SV=1

 Score =  106 bits (265), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 45/71 (63%), Positives = 57/71 (80%)

Query: 96  FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 155
           FNR  L NVGY  A ++  + CFIFHDVDL+PEDDRNLYTCP  PRHMSVA+D  +Y+LP
Sbjct: 195 FNRGKLMNVGYDVASRLYPWQCFIFHDVDLLPEDDRNLYTCPIQPRHMSVAIDKFHYKLP 254

Query: 156 YASLFGGVSNI 166
           Y+++FGG+S +
Sbjct: 255 YSAIFGGISAL 265

Catalyzes the transfer of galactose onto proteins or lipids. Required for susceptibility to pore-forming crystal toxins in conjunction with bre-1, bre-2 and bre-3.

Caenorhabditis briggsae (taxid: 6238)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|O60513|B4GT4_HUMAN Beta-1,4-galactosyltransferase 4 OS=Homo sapiens GN=B4GALT4 PE=1 SV=1

 Score = 98.6 bits (244), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 54/76 (71%)

Query: 91  SEGHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSM 150
           +EG  FNRA L NVGY EA+K   +DCFIFHDVDL+PE+D NLY C   P+H+ V  +S 
Sbjct: 163 AEGKKFNRAKLLNVGYLEALKEENWDCFIFHDVDLVPENDFNLYKCEEHPKHLVVGRNST 222

Query: 151 NYRLPYASLFGGVSNI 166
            YRL Y+  FGGV+ +
Sbjct: 223 GYRLRYSGYFGGVTAL 238

Responsible for the synthesis of complex-type N-linked oligosaccharides in many glycoproteins as well as the carbohydrate moieties of glycolipids.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 7

EC: 5

>sp|O88419|B4GT6_RAT Beta-1,4-galactosyltransferase 6 OS=Rattus norvegicus GN=B4galt6 PE=1 SV=1

 Score = 97.4 bits (241), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 58/90 (64%)

Query: 77  EKANPQSSFFPHSISEGHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTC 136
           +K   + +F+    +   PFNRA LFNVG+ EA+K R +DC IFHDVD +PE+DRN Y C
Sbjct: 183 QKQRLEFAFYVIEQTGTQPFNRAMLFNVGFKEAMKDRAWDCVIFHDVDHLPENDRNYYGC 242

Query: 137 PGMPRHMSVAVDSMNYRLPYASLFGGVSNI 166
             MPRH +  +D   Y LPY   FGGVS +
Sbjct: 243 GEMPRHFAAKLDKYMYILPYKEFFGGVSGL 272

Required for the biosynthesis of glycosphingolipids.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 7

EC: 4

>sp|Q9WVK5|B4GT6_MOUSE Beta-1,4-galactosyltransferase 6 OS=Mus musculus GN=B4galt6 PE=2 SV=1

 Score = 97.4 bits (241), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 58/90 (64%)

Query: 77  EKANPQSSFFPHSISEGHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTC 136
           +K   + +F+    +   PFNRA LFNVG+ EA+K R +DC IFHDVD +PE+DRN Y C
Sbjct: 183 QKQRLEFAFYVIEQTGTQPFNRAMLFNVGFKEAMKDRAWDCVIFHDVDHLPENDRNYYGC 242

Query: 137 PGMPRHMSVAVDSMNYRLPYASLFGGVSNI 166
             MPRH +  +D   Y LPY   FGGVS +
Sbjct: 243 GEMPRHFAAKLDKYMYILPYKEFFGGVSGL 272

Required for the biosynthesis of glycosphingolipids.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 7

EC: 4

>sp|Q9JMK0|B4GT5_MOUSE Beta-1,4-galactosyltransferase 5 OS=Mus musculus GN=B4galt5 PE=2 SV=2

 Score = 97.1 bits (240), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 60/99 (60%), Gaps = 3/99 (3%)

Query: 71  MLRH---RKEKANPQSSFFPHSISEGHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIP 127
           +LRH     ++   Q +F+        PFNRA LFNVG+ EA+K  ++DC IFHDVD IP
Sbjct: 180 LLRHLLPMLQRQRLQFAFYVIEQVGTQPFNRAMLFNVGFQEAMKDLDWDCLIFHDVDHIP 239

Query: 128 EDDRNLYTCPGMPRHMSVAVDSMNYRLPYASLFGGVSNI 166
           E DRN Y C  MPRH +  +D   Y LPY   FGGVS +
Sbjct: 240 ESDRNYYGCGQMPRHFATKLDKYMYLLPYTEFFGGVSGL 278

Responsible for the synthesis of complex-type N-linked oligosaccharides in many glycoproteins as well as the carbohydrate moieties of glycolipids.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|O43286|B4GT5_HUMAN Beta-1,4-galactosyltransferase 5 OS=Homo sapiens GN=B4GALT5 PE=2 SV=1

 Score = 96.7 bits (239), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 56/90 (62%)

Query: 77  EKANPQSSFFPHSISEGHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTC 136
           ++   Q +F+        PFNRA LFNVG+ EA+K  ++DC IFHDVD IPE DRN Y C
Sbjct: 189 QRQRLQFAFYVVEQVGTQPFNRAMLFNVGFQEAMKDLDWDCLIFHDVDHIPESDRNYYGC 248

Query: 137 PGMPRHMSVAVDSMNYRLPYASLFGGVSNI 166
             MPRH +  +D   Y LPY   FGGVS +
Sbjct: 249 GQMPRHFATKLDKYMYLLPYTEFFGGVSGL 278

Responsible for the synthesis of complex-type N-linked oligosaccharides in many glycoproteins as well as the carbohydrate moieties of glycolipids.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q80WN7|B4GT4_CRIGR Beta-1,4-galactosyltransferase 4 OS=Cricetulus griseus GN=B4GALT4 PE=2 SV=1

 Score = 96.7 bits (239), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 42/71 (59%), Positives = 53/71 (74%)

Query: 96  FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 155
           FNRA L NVGY EA+K + +DCFIFHDVDL+PE+D NLYTC   P+H+ V  +S  YRL 
Sbjct: 168 FNRAKLLNVGYLEALKEQNWDCFIFHDVDLVPENDFNLYTCGDQPKHLVVGRNSTGYRLR 227

Query: 156 YASLFGGVSNI 166
           Y+  FGGV+ +
Sbjct: 228 YSKYFGGVTAL 238

Responsible for the synthesis of complex-type N-linked oligosaccharides in many glycoproteins as well as the carbohydrate moieties of glycolipids.

Cricetulus griseus (taxid: 10029)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 7

EC: 5

>sp|Q66HH1|B4GT4_RAT Beta-1,4-galactosyltransferase 4 OS=Rattus norvegicus GN=B4galt4 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 42/71 (59%), Positives = 52/71 (73%)

Query: 96  FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 155
           FNRA L NVGY EA+K   +DCFIFHDVDL+PE+D NLYTC   P+H+ V  +S  YRL 
Sbjct: 168 FNRAKLLNVGYLEALKEENWDCFIFHDVDLVPENDFNLYTCGDQPKHLVVGRNSTGYRLR 227

Query: 156 YASLFGGVSNI 166
           Y+  FGGV+ +
Sbjct: 228 YSKYFGGVTAL 238

Responsible for the synthesis of complex-type N-linked oligosaccharides in many glycoproteins as well as the carbohydrate moieties of glycolipids.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 7

EC: 5

>sp|Q9JJ04|B4GT4_MOUSE Beta-1,4-galactosyltransferase 4 OS=Mus musculus GN=B4galt4 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 41/71 (57%), Positives = 52/71 (73%)

Query: 96  FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 155
           FNRA L NVGY EA+K   +DCF+FHDVDL+PE+D NLYTC   P+H+ V  +S  YRL 
Sbjct: 168 FNRAKLLNVGYLEALKEENWDCFVFHDVDLVPENDFNLYTCGDQPKHLVVGRNSTGYRLR 227

Query: 156 YASLFGGVSNI 166
           Y+  FGGV+ +
Sbjct: 228 YSKYFGGVTAL 238

Responsible for the synthesis of complex-type N-linked oligosaccharides in many glycoproteins as well as the carbohydrate moieties of glycolipids.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 7

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
380030125	395	PREDICTED: beta-1,4-N-acetylgalactosamin	0.425	0.179	0.788	1e-26
328775879	395	PREDICTED: beta-1,4-N-acetylgalactosamin	0.425	0.179	0.788	1e-26
383865407	399	PREDICTED: beta-1,4-N-acetylgalactosamin	0.425	0.177	0.788	2e-26
383865405	254	PREDICTED: beta-1,4-N-acetylgalactosamin	0.425	0.279	0.788	2e-26
442753803	386	Putative udp-gal:glucosylceramide beta-1	0.425	0.183	0.746	2e-26
350401522	398	PREDICTED: beta-1,4-N-acetylgalactosamin	0.413	0.173	0.811	2e-26
340729171	398	PREDICTED: beta-1,4-N-acetylgalactosamin	0.413	0.173	0.811	2e-26
427782137	379	Putative udp-gal:glucosylceramide beta-1	0.425	0.187	0.746	5e-26
307177276	295	Beta-1,4-N-acetylgalactosaminyltransfera	0.425	0.240	0.774	6e-26
195334298	403	GM21525 [Drosophila sechellia] gi|194125	0.443	0.183	0.675	7e-26

>gi|380030125|ref|XP_003698706.1| PREDICTED: beta-1,4-N-acetylgalactosaminyltransferase bre-4-like [Apis florea]

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/71 (78%), Positives = 60/71 (84%)

Query: 96  FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 155
           FNRA L NVGY EA+K R FDCFIFHDVDL+PE+DRNLYTCP  PRHMSVAVD  NYRLP
Sbjct: 220 FNRAMLMNVGYVEALKERPFDCFIFHDVDLLPENDRNLYTCPEQPRHMSVAVDKFNYRLP 279

Query: 156 YASLFGGVSNI 166
           YA LFGGVS +
Sbjct: 280 YADLFGGVSAV 290

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328775879|ref|XP_394839.3| PREDICTED: beta-1,4-N-acetylgalactosaminyltransferase bre-4 [Apis mellifera]

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/71 (78%), Positives = 60/71 (84%)

Query: 96  FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 155
           FNRA L NVGY EA+K R FDCFIFHDVDL+PE+DRNLYTCP  PRHMSVAVD  NYRLP
Sbjct: 220 FNRAMLMNVGYVEALKERPFDCFIFHDVDLLPENDRNLYTCPEQPRHMSVAVDKFNYRLP 279

Query: 156 YASLFGGVSNI 166
           YA LFGGVS +
Sbjct: 280 YADLFGGVSAV 290

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865407|ref|XP_003708165.1| PREDICTED: beta-1,4-N-acetylgalactosaminyltransferase bre-4-like [Megachile rotundata]

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/71 (78%), Positives = 59/71 (83%)

Query: 96  FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 155
           FNRA L NVGY EA+K R FDCFIFHDVDL+PEDDRNLYTCP  PRHMSVAVD   YRLP
Sbjct: 224 FNRAMLMNVGYVEALKERPFDCFIFHDVDLLPEDDRNLYTCPEQPRHMSVAVDKFKYRLP 283

Query: 156 YASLFGGVSNI 166
           YA LFGGVS +
Sbjct: 284 YADLFGGVSAM 294

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865405|ref|XP_003708164.1| PREDICTED: beta-1,4-N-acetylgalactosaminyltransferase bre-4-like, partial [Megachile rotundata]

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/71 (78%), Positives = 59/71 (83%)

Query: 96  FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 155
           FNRA L NVGY EA+K R FDCFIFHDVDL+PEDDRNLYTCP  PRHMSVAVD   YRLP
Sbjct: 79  FNRAMLMNVGYVEALKERPFDCFIFHDVDLLPEDDRNLYTCPEQPRHMSVAVDKFKYRLP 138

Query: 156 YASLFGGVSNI 166
           YA LFGGVS +
Sbjct: 139 YADLFGGVSAM 149

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442753803|gb|JAA69061.1| Putative udp-gal:glucosylceramide beta-14-galactosyltransferase [Ixodes ricinus]

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/71 (74%), Positives = 61/71 (85%)

Query: 96  FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 155
           FNRA LFNVGY EA+ + ++DCFIFHDVDLIPEDDRNLYTCP  PRHMSVA+D+M YRLP
Sbjct: 213 FNRAKLFNVGYLEALALYDYDCFIFHDVDLIPEDDRNLYTCPEQPRHMSVAIDTMQYRLP 272

Query: 156 YASLFGGVSNI 166
           Y  +FGGVS +
Sbjct: 273 YVGIFGGVSAL 283

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350401522|ref|XP_003486181.1| PREDICTED: beta-1,4-N-acetylgalactosaminyltransferase bre-4-like isoform 1 [Bombus impatiens] gi|350401524|ref|XP_003486182.1| PREDICTED: beta-1,4-N-acetylgalactosaminyltransferase bre-4-like isoform 2 [Bombus impatiens]

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/69 (81%), Positives = 58/69 (84%)

Query: 96  FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 155
           FNRA L NVGY EA+K R FDCFIFHDVDL+PEDDRNLYTCP  PRHMSVAVD   YRLP
Sbjct: 223 FNRAMLMNVGYVEALKERPFDCFIFHDVDLLPEDDRNLYTCPEQPRHMSVAVDKFKYRLP 282

Query: 156 YASLFGGVS 164
           YA LFGGVS
Sbjct: 283 YADLFGGVS 291

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729171|ref|XP_003402881.1| PREDICTED: beta-1,4-N-acetylgalactosaminyltransferase bre-4-like [Bombus terrestris]

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/69 (81%), Positives = 58/69 (84%)

Query: 96  FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 155
           FNRA L NVGY EA+K R FDCFIFHDVDL+PEDDRNLYTCP  PRHMSVAVD   YRLP
Sbjct: 223 FNRAMLMNVGYVEALKERPFDCFIFHDVDLLPEDDRNLYTCPEQPRHMSVAVDKFKYRLP 282

Query: 156 YASLFGGVS 164
           YA LFGGVS
Sbjct: 283 YADLFGGVS 291

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427782137|gb|JAA56520.1| Putative udp-gal:glucosylceramide beta-14-galactosyltransferase [Rhipicephalus pulchellus]

 Score =  122 bits (306), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 53/71 (74%), Positives = 61/71 (85%)

Query: 96  FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 155
           FNRA LFNVGY EA+ + ++ CFIFHDVDLIPEDDRNLYTCP  PRHMSVA+D+M YRLP
Sbjct: 207 FNRAKLFNVGYLEALALYDYQCFIFHDVDLIPEDDRNLYTCPEQPRHMSVAIDTMKYRLP 266

Query: 156 YASLFGGVSNI 166
           YA +FGGVS +
Sbjct: 267 YALIFGGVSAL 277

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307177276|gb|EFN66454.1| Beta-1,4-N-acetylgalactosaminyltransferase bre-4 [Camponotus floridanus]

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 55/71 (77%), Positives = 58/71 (81%)

Query: 96  FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 155
           FNRA L NVGY EA+K R FDCFIFHDVDL+PEDDRNLYTCP  PRHMSVAVD   YRLP
Sbjct: 120 FNRAMLMNVGYVEALKERTFDCFIFHDVDLLPEDDRNLYTCPEQPRHMSVAVDKFKYRLP 179

Query: 156 YASLFGGVSNI 166
           Y  LFGGVS +
Sbjct: 180 YTDLFGGVSAM 190

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195334298|ref|XP_002033820.1| GM21525 [Drosophila sechellia] gi|194125790|gb|EDW47833.1| GM21525 [Drosophila sechellia]

 Score =  122 bits (305), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 50/74 (67%), Positives = 64/74 (86%)

Query: 91  SEGHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSM 150
           + G PFNRA++ N+GY EA+K+ ++DCFIFHDVDL+P DDRNLY CP  PRHMSVA+D++
Sbjct: 222 TNGKPFNRAAMMNIGYLEALKLYQWDCFIFHDVDLLPLDDRNLYNCPRQPRHMSVAIDTL 281

Query: 151 NYRLPYASLFGGVS 164
           N+RLPY S+FGGVS
Sbjct: 282 NFRLPYRSIFGGVS 295

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
FB|FBgn0027538	403	beta4GalNAcTA "beta4GalNAcTA"	0.443	0.183	0.675	2.6e-30
ZFIN|ZDB-GENE-061013-84	350	zgc:154116 "zgc:154116" [Danio	0.425	0.202	0.591	1.7e-25
ZFIN|ZDB-GENE-050417-236	364	b4galt1 "UDP-Gal:betaGlcNAc be	0.413	0.189	0.637	3.5e-25
ZFIN|ZDB-GENE-070912-258	379	b4galt2 "UDP-Gal:betaGlcNAc be	0.425	0.187	0.647	4e-25
WB|WBGene00000269	383	bre-4 [Caenorhabditis elegans	0.413	0.180	0.666	1.8e-23
UNIPROTKB|Q9GUM2	383	bre-4 "Beta-1,4-N-acetylgalact	0.413	0.180	0.666	1.8e-23
UNIPROTKB|C9J3R8	301	B4GALT4 "N-acetyllactosamine s	0.443	0.245	0.581	2.1e-23
UNIPROTKB|O60513	344	B4GALT4 "Beta-1,4-galactosyltr	0.443	0.215	0.581	2.1e-23
UNIPROTKB|E7ETS9	246	B4GALT4 "N-acetyllactosamine s	0.443	0.300	0.581	2.1e-23
RGD|1307880	344	B4galt4 "UDP-Gal:betaGlcNAc be	0.413	0.200	0.608	3.4e-23

FB|FBgn0027538 beta4GalNAcTA "beta4GalNAcTA" [Drosophila melanogaster (taxid:7227)]

 Score = 302 (111.4 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
 Identities = 50/74 (67%), Positives = 64/74 (86%)

Query:    91 SEGHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSM 150
             + G PFNRA++ N+GY EA+K+ ++DCFIFHDVDL+P DDRNLY CP  PRHMSVA+D++
Sbjct:   222 TNGKPFNRAAMMNIGYLEALKLYQWDCFIFHDVDLLPLDDRNLYNCPRQPRHMSVAIDTL 281

Query:   151 NYRLPYASLFGGVS 164
             N+RLPY S+FGGVS
Sbjct:   282 NFRLPYRSIFGGVS 295

GO:0007291 "sperm individualization" evidence=IMP

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0008376 "acetylgalactosaminyltransferase activity" evidence=IDA

GO:0008344 "adult locomotory behavior" evidence=IMP

GO:0006044 "N-acetylglucosamine metabolic process" evidence=IDA

GO:0007528 "neuromuscular junction development" evidence=IMP

GO:0033842 "N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity" evidence=IDA

GO:0009247 "glycolipid biosynthetic process" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

ZFIN|ZDB-GENE-061013-84 zgc:154116 "zgc:154116" [Danio rerio (taxid:7955)]

 Score = 251 (93.4 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
 Identities = 42/71 (59%), Positives = 55/71 (77%)

Query:    96 FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 155
             FNRA L N+GYAEA+K  ++DCF+F DVDLIP DDRN+Y C   PRH++V++D   +RLP
Sbjct:   175 FNRAKLLNIGYAEALKEYDYDCFVFSDVDLIPMDDRNIYKCYNQPRHLAVSMDKFGFRLP 234

Query:   156 YASLFGGVSNI 166
             Y   FGGVS++
Sbjct:   235 YTQYFGGVSSL 245

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0004461 "lactose synthase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

ZFIN|ZDB-GENE-050417-236 b4galt1 "UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1" [Danio rerio (taxid:7955)]

 Score = 248 (92.4 bits), Expect = 3.5e-25, Sum P(2) = 3.5e-25
 Identities = 44/69 (63%), Positives = 52/69 (75%)

Query:    96 FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 155
             FNRA L NVGYAEA+K  ++DCFIF DVD+IP DDRN Y C   PRH+SV++D   +RLP
Sbjct:   189 FNRAKLLNVGYAEALKEYDYDCFIFSDVDIIPMDDRNTYGCSSQPRHLSVSMDKFGFRLP 248

Query:   156 YASLFGGVS 164
             Y   FGGVS
Sbjct:   249 YKQYFGGVS 257

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0042074 "cell migration involved in gastrulation" evidence=IMP

GO:0008378 "galactosyltransferase activity" evidence=IMP

GO:0048570 "notochord morphogenesis" evidence=IMP

GO:0016740 "transferase activity" evidence=IEA

ZFIN|ZDB-GENE-070912-258 b4galt2 "UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2" [Danio rerio (taxid:7955)]

 Score = 253 (94.1 bits), Expect = 4.0e-25, Sum P(2) = 4.0e-25
 Identities = 46/71 (64%), Positives = 53/71 (74%)

Query:    96 FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 155
             FNRA L NVGY EAIK  E++CFIF DVDLIP DDRNLY C   PRH ++A+D   +RLP
Sbjct:   197 FNRAKLLNVGYTEAIKDAEYNCFIFSDVDLIPMDDRNLYHCYDQPRHFAIAMDKFGFRLP 256

Query:   156 YASLFGGVSNI 166
             YA  FGGVS +
Sbjct:   257 YAGYFGGVSGL 267

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

WB|WBGene00000269 bre-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 46/69 (66%), Positives = 56/69 (81%)

Query:    96 FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 155
             FNR  L NVGY  A ++  + CFIFHDVDL+PEDDRNLYTCP  PRHMSVA+D  NY+LP
Sbjct:   194 FNRGKLMNVGYDVASRLYPWQCFIFHDVDLLPEDDRNLYTCPIQPRHMSVAIDKFNYKLP 253

Query:   156 YASLFGGVS 164
             Y+++FGG+S
Sbjct:   254 YSAIFGGIS 262

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009636 "response to toxic substance" evidence=IMP

GO:0045747 "positive regulation of Notch signaling pathway" evidence=IGI

GO:0033207 "beta-1,4-N-acetylgalactosaminyltransferase activity" evidence=IDA

GO:0006486 "protein glycosylation" evidence=IDA

UNIPROTKB|Q9GUM2 bre-4 "Beta-1,4-N-acetylgalactosaminyltransferase bre-4" [Caenorhabditis elegans (taxid:6239)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 46/69 (66%), Positives = 56/69 (81%)

Query:    96 FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 155
             FNR  L NVGY  A ++  + CFIFHDVDL+PEDDRNLYTCP  PRHMSVA+D  NY+LP
Sbjct:   194 FNRGKLMNVGYDVASRLYPWQCFIFHDVDLLPEDDRNLYTCPIQPRHMSVAIDKFNYKLP 253

Query:   156 YASLFGGVS 164
             Y+++FGG+S
Sbjct:   254 YSAIFGGIS 262

GO:0075015 "formation of infection structure on or near host" evidence=IMP

GO:0008376 "acetylgalactosaminyltransferase activity" evidence=IDA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|C9J3R8 B4GALT4 "N-acetyllactosamine synthase" [Homo sapiens (taxid:9606)]

 Score = 235 (87.8 bits), Expect = 2.1e-23, Sum P(2) = 2.1e-23
 Identities = 43/74 (58%), Positives = 53/74 (71%)

Query:    91 SEGHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSM 150
             +EG  FNRA L NVGY EA+K   +DCFIFHDVDL+PE+D NLY C   P+H+ V  +S 
Sbjct:   163 AEGKKFNRAKLLNVGYLEALKEENWDCFIFHDVDLVPENDFNLYKCEEHPKHLVVGRNST 222

Query:   151 NYRLPYASLFGGVS 164
              YRL Y+  FGGV+
Sbjct:   223 GYRLRYSGYFGGVT 236

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

UNIPROTKB|O60513 B4GALT4 "Beta-1,4-galactosyltransferase 4" [Homo sapiens (taxid:9606)]

 Score = 235 (87.8 bits), Expect = 2.1e-23, Sum P(2) = 2.1e-23
 Identities = 43/74 (58%), Positives = 53/74 (71%)

Query:    91 SEGHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSM 150
             +EG  FNRA L NVGY EA+K   +DCFIFHDVDL+PE+D NLY C   P+H+ V  +S 
Sbjct:   163 AEGKKFNRAKLLNVGYLEALKEENWDCFIFHDVDLVPENDFNLYKCEEHPKHLVVGRNST 222

Query:   151 NYRLPYASLFGGVS 164
              YRL Y+  FGGV+
Sbjct:   223 GYRLRYSGYFGGVT 236

GO:0016021 "integral to membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0003945 "N-acetyllactosamine synthase activity" evidence=IEA

GO:0032580 "Golgi cisterna membrane" evidence=IEA

GO:0006643 "membrane lipid metabolic process" evidence=TAS

GO:0008378 "galactosyltransferase activity" evidence=TAS

GO:0000139 "Golgi membrane" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0018146 "keratan sulfate biosynthetic process" evidence=TAS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=TAS

GO:0030203 "glycosaminoglycan metabolic process" evidence=TAS

GO:0042339 "keratan sulfate metabolic process" evidence=TAS

GO:0043687 "post-translational protein modification" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|E7ETS9 B4GALT4 "N-acetyllactosamine synthase" [Homo sapiens (taxid:9606)]

 Score = 235 (87.8 bits), Expect = 2.1e-23, Sum P(2) = 2.1e-23
 Identities = 43/74 (58%), Positives = 53/74 (71%)

Query:    91 SEGHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSM 150
             +EG  FNRA L NVGY EA+K   +DCFIFHDVDL+PE+D NLY C   P+H+ V  +S 
Sbjct:   163 AEGKKFNRAKLLNVGYLEALKEENWDCFIFHDVDLVPENDFNLYKCEEHPKHLVVGRNST 222

Query:   151 NYRLPYASLFGGVS 164
              YRL Y+  FGGV+
Sbjct:   223 GYRLRYSGYFGGVT 236

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

RGD|1307880 B4galt4 "UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4" [Rattus norvegicus (taxid:10116)]

 Score = 233 (87.1 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
 Identities = 42/69 (60%), Positives = 51/69 (73%)

Query:    96 FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 155
             FNRA L NVGY EA+K   +DCFIFHDVDL+PE+D NLYTC   P+H+ V  +S  YRL 
Sbjct:   168 FNRAKLLNVGYLEALKEENWDCFIFHDVDLVPENDFNLYTCGDQPKHLVVGRNSTGYRLR 227

Query:   156 YASLFGGVS 164
             Y+  FGGV+
Sbjct:   228 YSKYFGGVT 236

GO:0003945 "N-acetyllactosamine synthase activity" evidence=IEA

GO:0006486 "protein glycosylation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0032580 "Golgi cisterna membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O60513	B4GT4_HUMAN	2, ., 4, ., 1, ., 2, 7, 5	0.5657	0.4550	0.2209	yes	N/A
Q9GUM2	BRE4_CAEEL	2, ., 4, ., 1, ., -	0.6478	0.4131	0.1801	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	167
cd00899	219	cd00899, b4GalT, Beta-4-Galactosyltransferase is i	4e-39
cd00899	219	cd00899, b4GalT, Beta-4-Galactosyltransferase is i	2e-23
pfam13733	136	pfam13733, Glyco_transf_7N, N-terminal region of g	5e-21
pfam02709	78	pfam02709, Glyco_transf_7C, N-terminal domain of g	6e-20
pfam02709	78	pfam02709, Glyco_transf_7C, N-terminal domain of g	4e-04
cd06420	182	cd06420, GT2_Chondriotin_Pol_N, N-terminal domain	0.004

>gnl|CDD|132999 cd00899, b4GalT, Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids

 Score =  131 bits (333), Expect = 4e-39
 Identities = 43/70 (61%), Positives = 54/70 (77%)

Query: 95  PFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRL 154
            FNRA L NVG+ EA+K  ++DCFIFHDVDL+PE+DRNLY C   PRH+SV +D  +Y+L
Sbjct: 47  RFNRAKLLNVGFLEALKDGDWDCFIFHDVDLLPENDRNLYGCEEGPRHLSVPLDKFHYKL 106

Query: 155 PYASLFGGVS 164
           PY + FGGV 
Sbjct: 107 PYKTYFGGVL 116

Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen. Length = 219

>gnl|CDD|132999 cd00899, b4GalT, Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids

 Score = 91.5 bits (228), Expect = 2e-23
 Identities = 32/55 (58%), Positives = 40/55 (72%)

Query: 29  QLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEKANPQS 83
           + VNGFSN YWGWGGEDDD+ NR+KAAGL+I R   D  +Y M+RH  +K N  +
Sbjct: 124 RKVNGFSNAYWGWGGEDDDLYNRIKAAGLKITRPSGDTGRYKMIRHIHDKRNRDN 178

Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen. Length = 219

>gnl|CDD|222351 pfam13733, Glyco_transf_7N, N-terminal region of glycosyl transferase group 7

 Score = 82.9 bits (205), Expect = 5e-21
 Identities = 28/43 (65%), Positives = 33/43 (76%)

Query: 95  PFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCP 137
           PFNRA L NVG  EA++   +DCFI HDVDL+PE+D NLYTC 
Sbjct: 92  PFNRAKLLNVGVLEALRDEPWDCFILHDVDLLPENDENLYTCD 134

This is the N-terminal half of a family of galactosyltransferases from a wide range of Metazoa with three related galactosyltransferases activities, all three of which are possessed by one sequence in some cases. EC:2.4.1.90, N-acetyllactosamine synthase; EC:2.4.1.38, Beta-N-acetylglucosaminyl-glycopeptide beta-1,4- galactosyltransferase; and EC:2.4.1.22 Lactose synthase. Note that N-acetyllactosamine synthase is a component of Lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin EC:2.4.1.90 is the catalyzed reaction. Length = 136

>gnl|CDD|217196 pfam02709, Glyco_transf_7C, N-terminal domain of galactosyltransferase

 Score = 78.4 bits (194), Expect = 6e-20
 Identities = 27/45 (60%), Positives = 33/45 (73%)

Query: 31 VNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHR 75
          VNGFSN +WGWGGEDDD+  R+  AGL+I R    I +Y MLRH+
Sbjct: 34 VNGFSNNFWGWGGEDDDLYARLLLAGLKIERPKFAIGRYHMLRHK 78

This is the N-terminal domain of a family of galactosyltransferases from a wide range of Metazoa with three related galactosyltransferases activities, all three of which are possessed by one sequence in some cases. EC:2.4.1.90, N-acetyllactosamine synthase; EC:2.4.1.38, Beta-N-acetylglucosaminyl-glycopeptide beta-1,4- galactosyltransferase; and EC:2.4.1.22 Lactose synthase. Note that N-acetyllactosamine synthase is a component of Lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin EC:2.4.1.90 is the catalyzed reaction. Length = 78

>gnl|CDD|217196 pfam02709, Glyco_transf_7C, N-terminal domain of galactosyltransferase

 Score = 36.8 bits (86), Expect = 4e-04
 Identities = 15/27 (55%), Positives = 18/27 (66%)

Query: 141 RHMSVAVDSMNYRLPYASLFGGVSNIY 167
           RH+SVA+D  NY+LPY   FGGV    
Sbjct: 1   RHLSVALDKFNYKLPYKGYFGGVLAFS 27

This is the N-terminal domain of a family of galactosyltransferases from a wide range of Metazoa with three related galactosyltransferases activities, all three of which are possessed by one sequence in some cases. EC:2.4.1.90, N-acetyllactosamine synthase; EC:2.4.1.38, Beta-N-acetylglucosaminyl-glycopeptide beta-1,4- galactosyltransferase; and EC:2.4.1.22 Lactose synthase. Note that N-acetyllactosamine synthase is a component of Lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin EC:2.4.1.90 is the catalyzed reaction. Length = 78

>gnl|CDD|133042 cd06420, GT2_Chondriotin_Pol_N, N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 1/35 (2%)

Query: 25  WDKDQL-VNGFSNEYWGWGGEDDDMSNRVKAAGLQ 58
           W KD L VNGF  E+ GWGGED ++  R+  +G++
Sbjct: 134 WKKDLLAVNGFDEEFTGWGGEDSELVARLLNSGIK 168

Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm to undergo cytokinesis and cell division. Chondroitin is synthesized as proteoglycans, sulfated and secreted to the cell surface or extracellular matrix. Length = 182

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	167
KOG3916|consensus	372		100.0
KOG3916|consensus	372		99.94
cd00899	219	b4GalT Beta-4-Galactosyltransferase is involved in	99.94
cd00899	219	b4GalT Beta-4-Galactosyltransferase is involved in	99.86
PF13733	136	Glyco_transf_7N: N-terminal region of glycosyl tra	99.81
PF02709	78	Glyco_transf_7C: N-terminal domain of galactosyltr	99.68
KOG3917|consensus	310		99.59
KOG3917|consensus	310		99.31
PF10111	281	Glyco_tranf_2_2: Glycosyltransferase like family 2	98.27
KOG3588|consensus	494		97.44
cd06420	182	GT2_Chondriotin_Pol_N N-terminal domain of Chondro	97.11
PF02709	78	Glyco_transf_7C: N-terminal domain of galactosyltr	96.37
PF05679	499	CHGN: Chondroitin N-acetylgalactosaminyltransferas	96.12
cd02510	299	pp-GalNAc-T pp-GalNAc-T initiates the formation of	96.11
COG4092	346	Predicted glycosyltransferase involved in capsule	94.95
cd04186	166	GT_2_like_c Subfamily of Glycosyltransferase Famil	92.09
cd04184	202	GT2_RfbC_Mx_like Myxococcus xanthus RfbC like prot	91.75
cd06913	219	beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltran	91.52
cd02526	237	GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl tr	89.01
COG1216	305	Predicted glycosyltransferases [General function p	87.51
TIGR01556	281	rhamnosyltran L-rhamnosyltransferase. Rhamnolipids	87.04
cd04185	202	GT_2_like_b Subfamily of Glycosyltransferase Famil	87.02
cd02522	221	GT_2_like_a GT_2_like_a represents a glycosyltrans	86.74
cd04195	201	GT2_AmsE_like GT2_AmsE_like is involved in exopoly	81.68
cd06435	236	CESA_NdvC_like NdvC_like proteins in this family a	81.55

>KOG3916|consensus

Probab=100.00  E-value=2.1e-35  Score=254.50  Aligned_cols=88  Identities=56%  Similarity=1.023  Sum_probs=84.2

Q ss_pred             CCCCCCcccccccCCcccccccchhhhHHHHHhhCCcCeEEEEeecccccCCCCccccCCcceeeeeecccccccCCCCc
Q psy6979          79 ANPQSSFFPHSISEGHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLPYAS  158 (167)
Q Consensus        79 ~Npq~~~~v~~q~~~~~fNR~~LlNvg~~eal~~~~~~~~~~hdVDLlP~~~~n~Y~c~~~p~Hls~~~~~~~y~~~y~~  158 (167)
                      +-.++.|++++|.++++||||+|||+||.||++...||||+||||||+||||||+|+|+++|||+|+++|+|+|+|||.+
T Consensus       180 QrL~y~iyVieQ~g~~~FNRakL~NVGf~eAlkd~~wdCfIFHDVDllPenDrNlY~C~~~PRH~sva~dk~gy~LPY~~  259 (372)
T KOG3916|consen  180 QRLDYRIYVIEQAGNKPFNRAKLLNVGFLEALKDYGWDCFIFHDVDLLPENDRNLYGCPEQPRHMSVALDKFGYRLPYKE  259 (372)
T ss_pred             hhhceeEEEEEecCCCcccHHHhhhhHHHHHHHhcCCCEEEEecccccccCCCCccCCCCCCcchhhhhhhccccccchh
Confidence            33456689999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeeeee
Q psy6979         159 LFGGVSNI  166 (167)
Q Consensus       159 ~~GGv~~~  166 (167)
                      +||||+||
T Consensus       260 ~FGGVsal  267 (372)
T KOG3916|consen  260 YFGGVSAL  267 (372)
T ss_pred             hhCchhhc
Confidence            99999997

>KOG3916|consensus

Probab=99.94  E-value=5.1e-29  Score=215.08  Aligned_cols=101  Identities=37%  Similarity=0.659  Sum_probs=89.0

Q ss_pred             CCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCCCceeeeccccccccCCCCCCcccccccCC-cccccccchh
Q psy6979          26 DKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEKANPQSSFFPHSISEG-HPFNRASLFN  103 (167)
Q Consensus        26 ~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~~i~rY~ml~H~~d~~Npq~~~~v~~q~~~-~~fNR~~LlN  103 (167)
                      +++. +||||||.|||||||||||..|+..+|++|.||+.++|||+||+|. ++.|+++..|+..+... .++-+++|.|
T Consensus       269 ~~qf~kINGFsN~fWGWGGEDDDl~nRv~~ag~~IsRp~~~igrYkMikH~-~k~n~~n~~Ry~lL~~tk~r~~~DGLns  347 (372)
T KOG3916|consen  269 KEQFRKINGFSNAFWGWGGEDDDLWNRVQLAGMKISRPPPEIGRYKMIKHH-DKGNEPNPGRYKLLRNTKERQTQDGLNS  347 (372)
T ss_pred             HHHHHHhcCCCchhcccCCcchHHHHHHHhcCceeecCCCccceeEEeecc-cccCCCChHHHHHHHhhhhhhhhccccc
Confidence            3444 9999999999999999999999999999999999999999999998 88888998888887755 5566666666


Q ss_pred             hhHHHHHhhCCcCeEEEEeeccccc
Q psy6979         104 VGYAEAIKIREFDCFIFHDVDLIPE  128 (167)
Q Consensus       104 vg~~eal~~~~~~~~~~hdVDLlP~  128 (167)
                      +-|. .++++..|+||++.||+.|+
T Consensus       348 l~Y~-~~~v~~~pLyt~itVDl~~~  371 (372)
T KOG3916|consen  348 LKYQ-LLKVELDPLYTNITVDLGPE  371 (372)
T ss_pred             eeee-eeeeecccceEEEEEecccC
Confidence            7776 67899999999999999886

>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids

Probab=99.94  E-value=2.3e-27  Score=195.61  Aligned_cols=90  Identities=49%  Similarity=0.918  Sum_probs=84.7

Q ss_pred             cCCCCCCcccccccCCcccccccchhhhHHHHHhhCCcCeEEEEeecccccCCCCccccCCcceeeeeecccccccCCCC
Q psy6979          78 KANPQSSFFPHSISEGHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLPYA  157 (167)
Q Consensus        78 ~~Npq~~~~v~~q~~~~~fNR~~LlNvg~~eal~~~~~~~~~~hdVDLlP~~~~n~Y~c~~~p~Hls~~~~~~~y~~~y~  157 (167)
                      .++.++.+++++|.++.+||||.|+|+||.||++...++|++||||||+|+|++|.|+|+++|+|+|+++++|+|++||+
T Consensus        30 rq~~~~~i~vi~Q~~~~~FNR~~llNvG~~~a~k~~~~dc~i~hDVDllP~~~~~~y~~~~~p~H~s~~~~~~~~~lpy~  109 (219)
T cd00899          30 RQQLDYRIFVIEQVGNFRFNRAKLLNVGFLEALKDGDWDCFIFHDVDLLPENDRNLYGCEEGPRHLSVPLDKFHYKLPYK  109 (219)
T ss_pred             hcCCcEEEEEEEecCCccchhhhhhhHHHHHHhhcCCccEEEEecccccccCccccccCCCCCeEEEEeecccccccCcc
Confidence            34556678999999999999999999999999998889999999999999999999999999999999999999999999


Q ss_pred             cceeeeeeeC
Q psy6979         158 SLFGGVSNIY  167 (167)
Q Consensus       158 ~~~GGv~~~~  167 (167)
                      +++||++++.
T Consensus       110 ~~~Gg~~~~~  119 (219)
T cd00899         110 TYFGGVLALT  119 (219)
T ss_pred             cccccceeeE
Confidence            9999999873

Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.

>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids

Probab=99.86  E-value=3.5e-23  Score=170.82  Aligned_cols=113  Identities=34%  Similarity=0.556  Sum_probs=93.5

Q ss_pred             ccceeEEeeeceeeEeeecCCCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCCCceeeeccccccccCCCCCC
Q psy6979           6 QIDYTIFIIEQEVEVPTVPWDKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEKANPQSS   84 (167)
Q Consensus         6 ~~~~~~~~~~~~~~v~~~~~~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~~i~rY~ml~H~~d~~Npq~~   84 (167)
                      .+||..++. |+++++    ++|+ +||||||.|||||+||+||..||..+|+++.|++..++||.|++|.++..++++.
T Consensus       105 ~lpy~~~~G-g~~~~~----k~~f~~VNGf~n~f~GWGgEDdd~~~Rl~~~g~~~~r~~~~~~~~~hL~H~~~~r~~~N~  179 (219)
T cd00899         105 KLPYKTYFG-GVLALT----REQFRKVNGFSNAYWGWGGEDDDLYNRIKAAGLKITRPSGDTGRYKMIRHIHDKRNRDNP  179 (219)
T ss_pred             ccCcccccc-cceeeE----HHHHHHhCCcCCcCccCCcchHHHHHHHHHCCCeEEeccCcccceeeeecCCCcccccCH
Confidence            456777666 777777    8888 9999999999999999999999999999999999999999999999887666776


Q ss_pred             cccccccC-CcccccccchhhhHHHHHhhCCcCeEEEEeec
Q psy6979          85 FFPHSISE-GHPFNRASLFNVGYAEAIKIREFDCFIFHDVD  124 (167)
Q Consensus        85 ~~v~~q~~-~~~fNR~~LlNvg~~eal~~~~~~~~~~hdVD  124 (167)
                      .+...... ..++...+|.++.|. .++....|+||++.||
T Consensus       180 ~r~~~l~~~~~~~~~dGLnsl~Y~-v~~~~~~pl~t~i~vd  219 (219)
T cd00899         180 NRFALLQNSRERDHSDGLNSLKYK-VLSIELAPLYTNILVD  219 (219)
T ss_pred             HHHHHHHhhCeEeccCCccceEEE-EEEEeccccEEEEEeC
Confidence            66655554 455566666666666 6788899999999997

Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.

>PF13733 Glyco_transf_7N: N-terminal region of glycosyl transferase group 7; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A

Probab=99.81  E-value=3.5e-21  Score=148.30  Aligned_cols=61  Identities=52%  Similarity=0.952  Sum_probs=45.4

Q ss_pred             CCCCCCcccccccCCcccccccchhhhHHHHHhhCCcCeEEEEeecccccCCCCccccCCc
Q psy6979          79 ANPQSSFFPHSISEGHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGM  139 (167)
Q Consensus        79 ~Npq~~~~v~~q~~~~~fNR~~LlNvg~~eal~~~~~~~~~~hdVDLlP~~~~n~Y~c~~~  139 (167)
                      +...+.|++++|.++.+||||+|||+||.||++...||||+||||||+|||++|+|+|+++
T Consensus        76 Q~~~y~I~vieQ~~~~~FNRg~L~NvGf~eA~~~~~~dc~ifHDVDllP~~~~n~Y~C~~~  136 (136)
T PF13733_consen   76 QQLDYRIFVIEQVDNGPFNRGKLMNVGFLEALKDDDFDCFIFHDVDLLPENDRNLYTCDEQ  136 (136)
T ss_dssp             TT-EEEEEEEEE-SSS---HHHHHHHHHHHHHHHS--SEEEEE-TTEEESBTTS-SS----
T ss_pred             CcceEEEEEEeeccCCCCchhhhhhHHHHHHhhccCCCEEEEecccccccCCCceeeCCCC
Confidence            4456679999999999999999999999999999899999999999999999999999863

...

>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases

Probab=99.68  E-value=7.7e-18  Score=118.57  Aligned_cols=64  Identities=42%  Similarity=0.883  Sum_probs=49.1

Q ss_pred             cceeEEeeeceeeEeeecCCCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCCCceeeeccccc
Q psy6979           7 IDYTIFIIEQEVEVPTVPWDKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHR   75 (167)
Q Consensus         7 ~~~~~~~~~~~~~v~~~~~~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~~i~rY~ml~H~   75 (167)
                      .+|..++. ++++++    ++++ +||||||.|||||+||+||..|+..+|+++.|.+..+.+|+|++|+
T Consensus        14 ~~~~~~~G-g~~~~~----~~~f~~vnGfde~f~gWG~ED~Dl~~Rl~~~g~~~~~~~~~~~~yh~~~H~   78 (78)
T PF02709_consen   14 YPYPNFFG-GVFAIS----REDFEKVNGFDERFWGWGGEDDDLYNRLWKAGLKIVRVPGSIGRYHLWKHK   78 (78)
T ss_dssp             -SSTT----SEEEEE----HHHHHHTTSS-SS-TSCSSHHHHHHHHHHHTT---B-SSTTTTEEEEEET-
T ss_pred             CcCCCeeE-EEEEEe----HHHHHHcCCCCccccccCccHHHHHHHHHHcCCeEEecCCceEEEEEeecC
Confidence            45655666 888888    8888 9999999999999999999999999999999998899999999884

The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....

>KOG3917|consensus

Probab=99.59  E-value=3.6e-16  Score=130.02  Aligned_cols=83  Identities=34%  Similarity=0.582  Sum_probs=75.8

Q ss_pred             CCCCCcccccccCCcccccccchhhhHHHHHhhCCcCeEEEEeecccccCCCCccccCC--cceeeeeecccccccCCCC
Q psy6979          80 NPQSSFFPHSISEGHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPG--MPRHMSVAVDSMNYRLPYA  157 (167)
Q Consensus        80 Npq~~~~v~~q~~~~~fNR~~LlNvg~~eal~~~~~~~~~~hdVDLlP~~~~n~Y~c~~--~p~Hls~~~~~~~y~~~y~  157 (167)
                      |....|++.+|.+..+|||+.|.|+||.||..  .+|+.++|||||+|.|+..+|..|.  .|+|++++  +++++++|+
T Consensus       104 ~v~HHI~vlNQvD~fRFNRAsLINVGf~eas~--~~DYiaMhDVDLLPlN~el~Y~fP~~~gp~HiasP--~lHPkYHY~  179 (310)
T KOG3917|consen  104 NVSHHILVLNQVDPFRFNRASLINVGFNEASR--LCDYIAMHDVDLLPLNPELPYDFPGIGGPRHIASP--QLHPKYHYE  179 (310)
T ss_pred             CcceEEEEeeccCcceechhhheecchhhhcc--hhceeeecccccccCCCCCCCCCCccCCcccccCc--ccCchhhhh
Confidence            33446889999999999999999999999853  5899999999999999999999996  89999999  899999999


Q ss_pred             cceeeeeee
Q psy6979         158 SLFGGVSNI  166 (167)
Q Consensus       158 ~~~GGv~~~  166 (167)
                      .|.||++.+
T Consensus       180 ~fvGGILll  188 (310)
T KOG3917|consen  180 KFVGGILLL  188 (310)
T ss_pred             hhcceeEEe
Confidence            999999876

>KOG3917|consensus

Probab=99.31  E-value=3e-13  Score=112.67  Aligned_cols=89  Identities=27%  Similarity=0.411  Sum_probs=68.4

Q ss_pred             eEeeecCCCCcccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCCCceee-eccccccccCCCCCCc-ccccccC--Cc
Q psy6979          19 EVPTVPWDKDQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKY-SMLRHRKEKANPQSSF-FPHSISE--GH   94 (167)
Q Consensus        19 ~v~~~~~~~~~~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~~i~rY-~ml~H~~d~~Npq~~~-~v~~q~~--~~   94 (167)
                      +|+++.-++..+.||+||.|||||.|||||..|+..+|+++.||+....-+ .+++|.|++..++++. +..+|+.  .+
T Consensus       184 GILll~~~hyk~~NGMSN~yWGWGlEDDEFy~RI~dagLqltRpsgi~Tg~~~TFrHiH~p~~RKRD~k~~~nQke~~rK  263 (310)
T KOG3917|consen  184 GILLLTLKHYKKLNGMSNKYWGWGLEDDEFYLRIIDAGLQLTRPSGISTGSSNTFRHIHGPKHRKRDKKNDKNQKEIKRK  263 (310)
T ss_pred             eeEEeeHHHHHHhcCccccccccCcccchhhheeccccceEecccCcccCccchhhhhcChhhhhhhhhhhhhHHHHHhh
Confidence            567777677679999999999999999999999999999999998754444 8899998887666652 3344442  23


Q ss_pred             ccccccchhhhHH
Q psy6979          95 PFNRASLFNVGYA  107 (167)
Q Consensus        95 ~fNR~~LlNvg~~  107 (167)
                      +=-.++|-++.|.
T Consensus       264 rDh~~GL~~VkY~  276 (310)
T KOG3917|consen  264 RDHVSGLHDVKYL  276 (310)
T ss_pred             hcccccccceeee
Confidence            3345677777776

>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ]

Probab=98.27  E-value=4.6e-07  Score=76.23  Aligned_cols=50  Identities=32%  Similarity=0.560  Sum_probs=39.8

Q ss_pred             eEEeeeceeeEeeecCCCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCC
Q psy6979          10 TIFIIEQEVEVPTVPWDKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPP   64 (167)
Q Consensus        10 ~~~~~~~~~~v~~~~~~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~   64 (167)
                      ..+.+ +...|.    +++. +|+||+|+|-|||+||.||..||..+|.++.+++.
T Consensus       166 ~~~~s-~~~~i~----r~~f~~iGGfDE~f~G~G~ED~D~~~RL~~~~~~~~~~~~  216 (281)
T PF10111_consen  166 IAFAS-SCFLIN----REDFLEIGGFDERFRGWGYEDIDFGYRLKKAGYKFKRSPD  216 (281)
T ss_pred             ccccc-eEEEEE----HHHHHHhCCCCccccCCCcchHHHHHHHHHcCCcEecChH
Confidence            34444 444444    6666 99999999999999999999999999988887643

>KOG3588|consensus

Probab=97.44  E-value=8.4e-05  Score=66.32  Aligned_cols=38  Identities=45%  Similarity=0.796  Sum_probs=35.4

Q ss_pred             CCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCC
Q psy6979          26 DKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYP   63 (167)
Q Consensus        26 ~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~   63 (167)
                      +.|+ .|.||+..-.|||+||.|+......+|++++|.+
T Consensus       392 rsd~~~vgGFD~~I~GWG~EDV~Ly~K~v~~~l~viR~p  430 (494)
T KOG3588|consen  392 RSDFLTVGGFDMEIKGWGGEDVDLYRKYVHSGLKVIRTP  430 (494)
T ss_pred             eccceeecCcceeeeccCcchHHHHHHHHhcCcEEEecC
Confidence            5667 9999999999999999999999999999999964

>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase

Probab=97.11  E-value=0.00034  Score=53.17  Aligned_cols=43  Identities=37%  Similarity=0.793  Sum_probs=36.3

Q ss_pred             cCCCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCCCc
Q psy6979          24 PWDKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDI   66 (167)
Q Consensus        24 ~~~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~~i   66 (167)
                      .++++. +++||++.|.+||+||.|+..|+.++|++..+..+..
T Consensus       133 ~~r~~~~~~ggf~~~~~~~~~eD~~l~~r~~~~g~~~~~~~~~~  176 (182)
T cd06420         133 FWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSGIKFRKLKFAA  176 (182)
T ss_pred             EEHHHHHHhCCCCcccccCCcchHHHHHHHHHcCCcEEEecccc
Confidence            346666 8999999999999999999999999998888754433

Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm

>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases

Probab=96.37  E-value=0.0023  Score=44.83  Aligned_cols=26  Identities=50%  Similarity=1.050  Sum_probs=21.1

Q ss_pred             eeeeeecccccccCCCCcceeeeeee
Q psy6979         141 RHMSVAVDSMNYRLPYASLFGGVSNI  166 (167)
Q Consensus       141 ~Hls~~~~~~~y~~~y~~~~GGv~~~  166 (167)
                      ||||..+++++++++|..++||++++
T Consensus         1 rh~~~~~~~~~~~~~~~~~~Gg~~~~   26 (78)
T PF02709_consen    1 RHLSPSIDEFNYKYPYPNFFGGVFAI   26 (78)
T ss_dssp             EEEETEEGGGTSS-SSTT---SEEEE
T ss_pred             CCeeeccCcccCcCcCCCeeEEEEEE
Confidence            79999999999999999999999987

The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....

>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase

Probab=96.12  E-value=0.0043  Score=57.01  Aligned_cols=48  Identities=31%  Similarity=0.519  Sum_probs=40.7

Q ss_pred             EEeeeceeeEeeecCCCCc-cc--CCCCCCCCCCCCCChHHHHHHHhcC--cceeeCC
Q psy6979          11 IFIIEQEVEVPTVPWDKDQ-LV--NGFSNEYWGWGGEDDDMSNRVKAAG--LQIIRYP   63 (167)
Q Consensus        11 ~~~~~~~~~v~~~~~~~~~-~v--NGf~n~~wgwG~ED~d~~~R~~~~g--~~~~r~~   63 (167)
                      .|-+ |.+++-    +.|. ++  .||+..-.|||+||.||..++..+|  +.+.|.+
T Consensus       408 ~~gf-g~~~~Y----ksDy~~~~~~~~~~~~~gwg~ED~~l~~~~l~~~~~l~V~Ra~  460 (499)
T PF05679_consen  408 RFGF-GMVCFY----KSDYMRIRGGGFDLSIRGWGGEDVDLYDKFLKSGHKLHVFRAV  460 (499)
T ss_pred             cCCC-ceEEEE----hhhhhhhcccccccccccccccHHHHHHHHHhCCCceEEEEcc
Confidence            3444 556666    8888 88  9999999999999999999999999  9999953

Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane

>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans

Probab=96.11  E-value=0.0044  Score=51.88  Aligned_cols=35  Identities=29%  Similarity=0.413  Sum_probs=31.9

Q ss_pred             ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCC
Q psy6979          30 LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPP   64 (167)
Q Consensus        30 ~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~   64 (167)
                      +|+||++.|..||+||.|+..|+..+|.++.-.|.
T Consensus       185 ~vGgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p~  219 (299)
T cd02510         185 ELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPC  219 (299)
T ss_pred             HhCCCCCcccccCchhHHHHHHHHHcCCeEEEeec
Confidence            89999999999999999999999999999876543

UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.

>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]

Probab=94.95  E-value=0.012  Score=50.92  Aligned_cols=52  Identities=17%  Similarity=0.210  Sum_probs=41.7

Q ss_pred             cccceeEEeeeceeeEeeecCCCCcccCCCCCCCCCCCCCChHHHHHHHhcC
Q psy6979           5 QQIDYTIFIIEQEVEVPTVPWDKDQLVNGFSNEYWGWGGEDDDMSNRVKAAG   56 (167)
Q Consensus         5 ~~~~~~~~~~~~~~~v~~~~~~~~~~vNGf~n~~wgwG~ED~d~~~R~~~~g   56 (167)
                      +.=.|..|++|--.++.++-.+...+..||+|+|.|.|.||-||..|+..+-
T Consensus       166 ~~~~~~~ff~~~~T~~~liN~~~F~~tgGydE~F~GhG~EDfe~~~R~~l~~  217 (346)
T COG4092         166 EFRKEDNFFIAPYTNIFLINRRMFSLTGGYDERFRGHGSEDFEFLTRLGLYI  217 (346)
T ss_pred             HhCcccccccccccceEEEehhHHHHhcCCccccccCCchhHHHHHHHHHHH
Confidence            3445777887666677767666666999999999999999999999987654

>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=92.09  E-value=0.12  Score=37.78  Aligned_cols=43  Identities=23%  Similarity=0.319  Sum_probs=33.9

Q ss_pred             eeecCCCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCC
Q psy6979          21 PTVPWDKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPP   64 (167)
Q Consensus        21 ~~~~~~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~   64 (167)
                      ..+..++.. +++||++.|-. ++||.|+..|+...|.++...+.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~-~~eD~~~~~~~~~~g~~i~~~~~  159 (166)
T cd04186         116 FLLVRREVFEEVGGFDEDFFL-YYEDVDLCLRARLAGYRVLYVPQ  159 (166)
T ss_pred             eEeeeHHHHHHcCCCChhhhc-cccHHHHHHHHHHcCCeEEEccc
Confidence            334445555 79999998876 77999999999999999877544

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis

Probab=91.75  E-value=0.12  Score=39.69  Aligned_cols=40  Identities=25%  Similarity=0.304  Sum_probs=31.7

Q ss_pred             CCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCCCce
Q psy6979          26 DKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIA   67 (167)
Q Consensus        26 ~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~~i~   67 (167)
                      ++-+ +++||++.|-  ++||.|+..|+..+|.++..-+..+.
T Consensus       158 r~~~~~iggf~~~~~--~~eD~~l~~rl~~~g~~~~~~~~~~~  198 (202)
T cd04184         158 RSLVRQVGGFREGFE--GAQDYDLVLRVSEHTDRIAHIPRVLY  198 (202)
T ss_pred             HHHHHHhCCCCcCcc--cchhHHHHHHHHhccceEEEccHhhh
Confidence            4434 8999999865  68999999999999998887655443

The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine

Probab=91.52  E-value=0.17  Score=39.84  Aligned_cols=41  Identities=20%  Similarity=0.044  Sum_probs=33.6

Q ss_pred             ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCCCceeeec
Q psy6979          30 LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSM   71 (167)
Q Consensus        30 ~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~~i~rY~m   71 (167)
                      +++||++.+.++ +||.||..|+..+|.++..-+.....|+.
T Consensus       170 ~~g~f~~~~~~~-~eD~~l~~r~~~~g~~i~~~~~~~~~yr~  210 (219)
T cd06913         170 HVGPFDEGGKGV-PEDLLFFYEHLRKGGGVYRVDRCLLLYRY  210 (219)
T ss_pred             hcCCccchhccc-hhHHHHHHHHHHcCCceEEEcceeeeeee
Confidence            899999987655 49999999999999999887665665554

This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.

>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase

Probab=89.01  E-value=0.17  Score=39.88  Aligned_cols=37  Identities=22%  Similarity=0.346  Sum_probs=30.2

Q ss_pred             CCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCC
Q psy6979          26 DKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYP   63 (167)
Q Consensus        26 ~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~   63 (167)
                      ++.+ +++||++.+- .++||.|+..|+..+|.++...+
T Consensus       160 r~~~~~~ggfd~~~~-~~~eD~d~~~r~~~~G~~~~~~~  197 (237)
T cd02526         160 LEALEKVGGFDEDLF-IDYVDTEWCLRARSKGYKIYVVP  197 (237)
T ss_pred             HHHHHHhCCCCHHHc-CccchHHHHHHHHHcCCcEEEEc
Confidence            4434 8999998875 67899999999999998887643

Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.

>COG1216 Predicted glycosyltransferases [General function prediction only]

Probab=87.51  E-value=0.43  Score=40.33  Aligned_cols=44  Identities=27%  Similarity=0.471  Sum_probs=33.1

Q ss_pred             cccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCCCceeeecccc
Q psy6979          29 QLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRH   74 (167)
Q Consensus        29 ~~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~~i~rY~ml~H   74 (167)
                      .+|+||++.|-.+ .||.|++.|++.+|+++...+. ...++...+
T Consensus       180 ~~vG~~de~~F~y-~eD~D~~~R~~~~G~~i~~~p~-a~i~H~~g~  223 (305)
T COG1216         180 EKVGGFDERFFIY-YEDVDLCLRARKAGYKIYYVPD-AIIYHKIGS  223 (305)
T ss_pred             HHhCCCCccccee-ehHHHHHHHHHHcCCeEEEeec-cEEEEeccC
Confidence            3899999998766 6899999999999998877533 333344444

>TIGR01556 rhamnosyltran L-rhamnosyltransferase

Probab=87.04  E-value=0.52  Score=38.84  Aligned_cols=34  Identities=18%  Similarity=0.160  Sum_probs=29.6

Q ss_pred             ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCC
Q psy6979          30 LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPP   64 (167)
Q Consensus        30 ~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~   64 (167)
                      +|+||+++|..+ +||.|+..|+..+|.++...+.
T Consensus       162 ~iG~fde~~fi~-~~D~e~~~R~~~~G~~i~~~~~  195 (281)
T TIGR01556       162 RLGMMDEELFID-HVDTEWSLRAQNYGIPLYIDPD  195 (281)
T ss_pred             HhCCccHhhccc-chHHHHHHHHHHCCCEEEEeCC
Confidence            799999999766 4999999999999999887543

Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.

>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=87.02  E-value=0.37  Score=37.17  Aligned_cols=33  Identities=24%  Similarity=0.443  Sum_probs=28.0

Q ss_pred             CCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcce
Q psy6979          26 DKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQI   59 (167)
Q Consensus        26 ~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~   59 (167)
                      ++.+ +++||.+.|..|| ||.|+..|+..+|.++
T Consensus       130 ~~~~~~~g~~~~~~~~~~-eD~~~~~r~~~~G~~i  163 (202)
T cd04185         130 RRVVEKIGLPDKEFFIWG-DDTEYTLRASKAGPGI  163 (202)
T ss_pred             HHHHHHhCCCChhhhccc-hHHHHHHHHHHcCCcE
Confidence            3444 7889998887776 9999999999999999

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function

Probab=86.74  E-value=0.33  Score=37.76  Aligned_cols=36  Identities=17%  Similarity=0.122  Sum_probs=29.3

Q ss_pred             ecCCCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceee
Q psy6979          23 VPWDKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIR   61 (167)
Q Consensus        23 ~~~~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r   61 (167)
                      +..++.. ++.||++.+   .+||.||..|+..+|.++.-
T Consensus       142 ~~r~~~~~~~G~fd~~~---~~ED~d~~~r~~~~G~~~~~  178 (221)
T cd02522         142 FIRRELFEELGGFPELP---LMEDVELVRRLRRRGRPALL  178 (221)
T ss_pred             EEEHHHHHHhCCCCccc---cccHHHHHHHHHhCCCEEEc
Confidence            3334444 899999998   78999999999999977764

Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis

Probab=81.68  E-value=1  Score=34.52  Aligned_cols=38  Identities=21%  Similarity=0.221  Sum_probs=29.7

Q ss_pred             CCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCCCc
Q psy6979          26 DKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDI   66 (167)
Q Consensus        26 ~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~~i   66 (167)
                      ++.. +++||++.   .++||.++..|+..+|.++..-+...
T Consensus       159 r~~~~~~g~~~~~---~~~eD~~~~~r~~~~g~~~~~~~~~~  197 (201)
T cd04195         159 KSKVLAVGGYQDL---PLVEDYALWARMLANGARFANLPEIL  197 (201)
T ss_pred             HHHHHHcCCcCCC---CCchHHHHHHHHHHcCCceecccHHH
Confidence            3434 79999875   78999999999999998887654433

AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase

Probab=81.55  E-value=0.94  Score=35.77  Aligned_cols=36  Identities=19%  Similarity=0.191  Sum_probs=29.6

Q ss_pred             CCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCC
Q psy6979          26 DKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPP   64 (167)
Q Consensus        26 ~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~   64 (167)
                      ++-+ +++||++.+   ..||.|+..|+...|.++.-.+.
T Consensus       167 r~~~~~iGgf~~~~---~~eD~dl~~r~~~~G~~~~~~~~  203 (236)
T cd06435         167 RSALDDVGGWDEWC---ITEDSELGLRMHEAGYIGVYVAQ  203 (236)
T ss_pred             HHHHHHhCCCCCcc---ccchHHHHHHHHHCCcEEEEcch
Confidence            4444 899999875   47999999999999999887654

NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	167
1pzy_B	286	W314a-Beta1,4-Galactosyltransferase-I Complexed Wit		7e-19
1tvy_A	286	Beta-1,4-Galactosyltransferase Mutant Met344his (M3		8e-19
1nmm_B	286	Beta-1,4-Galactosyltransferase Mutant Cys342thr Com		8e-19
2fyd_B	286	Catalytic Domain Of Bovine Beta 1, 4-Galactosyltran		9e-19
1nf5_B	286	Crystal Structure Of Lactose Synthase, Complex With		9e-19
1fr8_A	288	Crystal Structure Of The Bovine Beta 1,4 Galactosyl		9e-19
1fgx_A	288	Crystal Structure Of The Bovine Beta 1,4 Galactosyl		9e-19
1nhe_B	286	Crystal Structure Of Lactose Synthase Complex With		1e-18
2ae7_A	287	Crystal Structure Of Human M340h-Beta1,4-Galactosyl		2e-18
1yro_B	286	Crystal Structure Of Beta14,-Galactosyltransferase		2e-18
3lw6_A	287	Crystal Structure Of Drosophila Beta1,4-Galactosylt		3e-06

>pdb|1PZY|B Chain B, W314a-Beta1,4-Galactosyltransferase-I Complexed With Alpha-Lactalbumin In The Presence Of N-Acetylglucosamine, Udp And Manganese Length = 286

Iteration: 1
 Score = 89.7 bits (221), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 50/71 (70%)
Query: 96  FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 155
           FNRA L NVG+ EA+K  +++CF+F DVDLIP +D N Y C   PRH+SVA+D   + LP
Sbjct: 110 FNRAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHNTYRCFSQPRHISVAMDKFGFSLP 169
Query: 156 YASLFGGVSNI 166
           Y   FGGVS +
Sbjct: 170 YVQYFGGVSAL 180

>pdb|1TVY|A Chain A, Beta-1,4-Galactosyltransferase Mutant Met344his (M344h-Gal- T1) Complex With Udp-Galactose And Manganese Length = 286

Iteration: 1
 Score = 89.7 bits (221), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 50/71 (70%)
Query: 96  FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 155
           FNRA L NVG+ EA+K  +++CF+F DVDLIP +D N Y C   PRH+SVA+D   + LP
Sbjct: 110 FNRAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHNTYRCFSQPRHISVAMDKFGFSLP 169
Query: 156 YASLFGGVSNI 166
           Y   FGGVS +
Sbjct: 170 YVQYFGGVSAL 180

>pdb|1NMM|B Chain B, Beta-1,4-Galactosyltransferase Mutant Cys342thr Complex With Alpha- Lactalbumin And Glcnac Length = 286

Iteration: 1
 Score = 89.4 bits (220), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 50/71 (70%)
Query: 96  FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 155
           FNRA L NVG+ EA+K  +++CF+F DVDLIP +D N Y C   PRH+SVA+D   + LP
Sbjct: 110 FNRAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHNTYRCFSQPRHISVAMDKFGFSLP 169
Query: 156 YASLFGGVSNI 166
           Y   FGGVS +
Sbjct: 170 YVQYFGGVSAL 180

>pdb|2FYD|B Chain B, Catalytic Domain Of Bovine Beta 1, 4-Galactosyltransferase In Complex With Alpha-Lactalbumin, Glucose, Mn, And Udp-N- Acetylgalactosamine Length = 286

Iteration: 1
 Score = 89.4 bits (220), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 50/71 (70%)
Query: 96  FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 155
           FNRA L NVG+ EA+K  +++CF+F DVDLIP +D N Y C   PRH+SVA+D   + LP
Sbjct: 110 FNRAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHNTYRCFSQPRHISVAMDKFGFSLP 169
Query: 156 YASLFGGVSNI 166
           Y   FGGVS +
Sbjct: 170 YVQYFGGVSAL 180

>pdb|1NF5|B Chain B, Crystal Structure Of Lactose Synthase, Complex With Glucose Length = 286

Iteration: 1
 Score = 89.4 bits (220), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 50/71 (70%)
Query: 96  FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 155
           FNRA L NVG+ EA+K  +++CF+F DVDLIP +D N Y C   PRH+SVA+D   + LP
Sbjct: 110 FNRAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHNTYRCFSQPRHISVAMDKFGFSLP 169
Query: 156 YASLFGGVSNI 166
           Y   FGGVS +
Sbjct: 170 YVQYFGGVSAL 180

>pdb|1FR8|A Chain A, Crystal Structure Of The Bovine Beta 1,4 Galactosyltransferase (B4galt1) Catalytic Domain Complexed With Uridine Diphosphogalactose Length = 288

Iteration: 1
 Score = 89.4 bits (220), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 50/71 (70%)
Query: 96  FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 155
           FNRA L NVG+ EA+K  +++CF+F DVDLIP +D N Y C   PRH+SVA+D   + LP
Sbjct: 112 FNRAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHNTYRCFSQPRHISVAMDKFGFSLP 171
Query: 156 YASLFGGVSNI 166
           Y   FGGVS +
Sbjct: 172 YVQYFGGVSAL 182

>pdb|1FGX|A Chain A, Crystal Structure Of The Bovine Beta 1,4 Galactosyltransferase (B4galt1) Catalytic Domain Complexed With Ump Length = 288

Iteration: 1
 Score = 89.4 bits (220), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 50/71 (70%)
Query: 96  FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 155
           FNRA L NVG+ EA+K  +++CF+F DVDLIP +D N Y C   PRH+SVA+D   + LP
Sbjct: 112 FNRAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHNTYRCFSQPRHISVAMDKFGFSLP 171
Query: 156 YASLFGGVSNI 166
           Y   FGGVS +
Sbjct: 172 YVQYFGGVSAL 182

>pdb|1NHE|B Chain B, Crystal Structure Of Lactose Synthase Complex With Udp Length = 286

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 49/71 (69%)
Query: 96  FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 155
           FNRA L NVG+ EA+K  +++CF+F DVDLIP +D N Y C   PRH+SVA D   + LP
Sbjct: 110 FNRAKLLNVGFKEALKDYDYNCFVFSDVDLIPXNDHNTYRCFSQPRHISVAXDKFGFSLP 169
Query: 156 YASLFGGVSNI 166
           Y   FGGVS +
Sbjct: 170 YVQYFGGVSAL 180

>pdb|2AE7|A Chain A, Crystal Structure Of Human M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1) In Complex With Pentasaccharide Length = 287

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 49/71 (69%)
Query: 96  FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 155
           FNRA L NVG+ EA+K  ++ CF+F DVDLIP +D N Y C   PRH+SVA+D   + LP
Sbjct: 111 FNRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMNDHNAYRCFSQPRHISVAMDKFGFSLP 170
Query: 156 YASLFGGVSNI 166
           Y   FGGVS +
Sbjct: 171 YVQYFGGVSAL 181

>pdb|1YRO|B Chain B, Crystal Structure Of Beta14,-Galactosyltransferase Mutant Arg228lys In Complex With Alpha-Lactalbumin In The Presence Of Udp-Galactose And Mn Length = 286

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 38/71 (53%), Positives = 50/71 (70%)
Query: 96  FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 155
           FN+A L NVG+ EA+K  +++CF+F DVDLIP +D N Y C   PRH+SVA+D   + LP
Sbjct: 110 FNKAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHNTYRCFSQPRHISVAMDKFGFSLP 169
Query: 156 YASLFGGVSNI 166
           Y   FGGVS +
Sbjct: 170 YVQYFGGVSAL 180

>pdb|3LW6|A Chain A, Crystal Structure Of Drosophila Beta1,4-Galactosyltransferas Length = 287

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 31  VNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIA-----KYSMLRHRKEKANPQSSF 85
           +NG SN+YWGWG EDD+   R++ AGLQ+ R P +I       +S + +R  +       
Sbjct: 173 MNGMSNQYWGWGLEDDEFFVRIRDAGLQVTR-PQNIKTGTNDTFSHIHNRYHRKRDTQKC 231
Query: 86  FPHSISEGHPFNRASLFNVGYAEAIKIREF 115
           F          ++  L NV Y + +K+ E 
Sbjct: 232 FNQKEMTRKRDHKTGLDNVKY-KILKVHEM 260

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	167
2fy7_A	287	Beta-1,4-galactosyltransferase 1; M339H mutant, AP	2e-16
2fy7_A	287	Beta-1,4-galactosyltransferase 1; M339H mutant, AP	2e-11
3lw6_A	287	FI08434P, beta-4-galactosyltransferase 7; protein-	3e-13
3lw6_A	287	FI08434P, beta-4-galactosyltransferase 7; protein-	1e-12

>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ... Length = 287

 Score = 73.8 bits (180), Expect = 2e-16
 Identities = 39/96 (40%), Positives = 55/96 (57%), Gaps = 1/96 (1%)

Query: 71  MLRHRKEKANPQSSFFPHSISEGHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDD 130
           +    + +      +  +   +   FNRA L NVG+ EA+K  ++ CF+F DVDLIP +D
Sbjct: 87  LHPVLQRQQLDYGIYVINQAGDT-IFNRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMND 145

Query: 131 RNLYTCPGMPRHMSVAVDSMNYRLPYASLFGGVSNI 166
            N Y C   PRH+SVA+D   + LPY   FGGVS +
Sbjct: 146 HNAYRCFSQPRHISVAMDKFGFSLPYVQYFGGVSAL 181

>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ... Length = 287

 Score = 59.5 bits (143), Expect = 2e-11
 Identities = 24/66 (36%), Positives = 34/66 (51%)

Query: 29  QLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEKANPQSSFFPH 88
             +NGF N YWGWGGEDDD+ NR+   G+ I R    +     +RH ++K N  +     
Sbjct: 187 LTINGFPNNYWGWGGEDDDIFNRLVFRGMSISRPNAVVGTTRHIRHSRDKKNEPNPQRFD 246

Query: 89  SISEGH 94
            I+   
Sbjct: 247 RIAHTK 252

>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex, glycosyltransferase; HET: UDP; 1.81A {Drosophila melanogaster} Length = 287

 Score = 64.4 bits (156), Expect = 3e-13
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 29  QLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIR-YPPDIAKYSMLRHRKEKANPQ 82
           + +NG SN+YWGWG EDD+   R++ AGLQ+ R             H   + + +
Sbjct: 171 KQMNGMSNQYWGWGLEDDEFFVRIRDAGLQVTRPQNIKTGTNDTFSHIHNRYHRK 225

>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex, glycosyltransferase; HET: UDP; 1.81A {Drosophila melanogaster} Length = 287

 Score = 63.3 bits (153), Expect = 1e-12
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 3/96 (3%)

Query: 71  MLRHRKEKANPQSSFFPHSISEGHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDD 130
           M    K +      F  + +     FNRASL NVG+  A     +D    HDVDL+P +D
Sbjct: 73  MTAFLKRQGVAHHIFVLNQVDRF-RFNRASLINVGFQFASD--VYDYIAMHDVDLLPLND 129

Query: 131 RNLYTCPGMPRHMSVAVDSMNYRLPYASLFGGVSNI 166
             LY  P     + +A   ++ +  Y +  GG+  +
Sbjct: 130 NLLYEYPSSLGPLHIAGPKLHPKYHYDNFVGGILLV 165

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	167
3lw6_A	287	FI08434P, beta-4-galactosyltransferase 7; protein-	99.91
3lw6_A	287	FI08434P, beta-4-galactosyltransferase 7; protein-	99.76
2fy7_A	287	Beta-1,4-galactosyltransferase 1; M339H mutant, AP	99.58
2fy7_A	287	Beta-1,4-galactosyltransferase 1; M339H mutant, AP	98.89
2z86_A	625	Chondroitin synthase; GT-A, glycosyltransferase A,	95.45
1xhb_A	472	Polypeptide N-acetylgalactosaminyltransferase 1; g	95.04
2d7i_A	570	Polypeptide N-acetylgalactosaminyltransferase 10;	94.37
2nxv_A	249	ATP synthase subunits region ORF 6; majastridin, A	94.24
2ffu_A	501	Ppgalnact-2, polypeptide N-acetylgalactosaminyltra	93.5
3bcv_A	240	Putative glycosyltransferase protein; protein stru	87.05

>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex, glycosyltransferase; HET: UDP; 1.81A {Drosophila melanogaster}

Probab=99.91  E-value=9.9e-26  Score=190.60  Aligned_cols=84  Identities=32%  Similarity=0.556  Sum_probs=77.5

Q ss_pred             CCCCCCcccccccCCcccccccchhhhHHHHHhhCCcCeEEEEeecccccCCCCccccCC--cceeeeeecccccccCCC
Q psy6979          79 ANPQSSFFPHSISEGHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPG--MPRHMSVAVDSMNYRLPY  156 (167)
Q Consensus        79 ~Npq~~~~v~~q~~~~~fNR~~LlNvg~~eal~~~~~~~~~~hdVDLlP~~~~n~Y~c~~--~p~Hls~~~~~~~y~~~y  156 (167)
                      +..++.|++++|.++.+||||+|||+||.||.  ..+||++||||||+||||+|+|.|++  +|+|+|++  +|+|++||
T Consensus        80 Q~l~y~I~VieQ~~~~~FNRa~LlNvGf~ea~--~~~d~~ifHDVDLlP~dd~n~Y~c~~~~~P~Hls~~--~~~~~~~Y  155 (287)
T 3lw6_A           80 QGVAHHIFVLNQVDRFRFNRASLINVGFQFAS--DVYDYIAMHDVDLLPLNDNLLYEYPSSLGPLHIAGP--KLHPKYHY  155 (287)
T ss_dssp             TTCEEEEEEEEECSSSCCCHHHHHHHHHHHSC--TTCCEEEEECTTEEECCTTSCCCCCCTTCCEESSCT--TTCSSCCC
T ss_pred             cCCceEEEEEecCCCCccchhheecccHHHHh--ccCCEEEEecccccccCCCccccCCCCCCceEEeec--cccCCCCc
Confidence            44556799999999999999999999999985  47899999999999999999999997  89999974  89999999


Q ss_pred             Ccceeeeeee
Q psy6979         157 ASLFGGVSNI  166 (167)
Q Consensus       157 ~~~~GGv~~~  166 (167)
                      ..+||||+++
T Consensus       156 ~~~~GGv~a~  165 (287)
T 3lw6_A          156 DNFVGGILLV  165 (287)
T ss_dssp             TTCCCSEEEE
T ss_pred             CCccccEEec
Confidence            9999999987

>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex, glycosyltransferase; HET: UDP; 1.81A {Drosophila melanogaster}

Probab=99.76  E-value=2.8e-20  Score=157.28  Aligned_cols=105  Identities=26%  Similarity=0.408  Sum_probs=79.0

Q ss_pred             ceeEEeeeceeeEeeecCCCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCC-CceeeeccccccccCCCCCC-
Q psy6979           8 DYTIFIIEQEVEVPTVPWDKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPP-DIAKYSMLRHRKEKANPQSS-   84 (167)
Q Consensus         8 ~~~~~~~~~~~~v~~~~~~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~-~i~rY~ml~H~~d~~Npq~~-   84 (167)
                      +|.+|+- |++++.    +++. +||||||.|||||+||+||..|+..+|+++.|++. .++||+|++|.|++.+++++ 
T Consensus       154 ~Y~~~~G-Gv~a~~----re~f~kVNGFsn~f~GWGgEDdD~~~Rl~~~G~~i~Rp~~~~~gry~m~~H~hd~~~r~rd~  228 (287)
T 3lw6_A          154 HYDNFVG-GILLVR----REHFKQMNGMSNQYWGWGLEDDEFFVRIRDAGLQVTRPQNIKTGTNDTFSHIHNRYHRKRDT  228 (287)
T ss_dssp             CCTTCCC-SEEEEE----HHHHHHTTSCCSCCCSSSSHHHHHHHHHHHTTCCCBCCSSCCCCTTTSEEECCCTTTSCCCC
T ss_pred             CcCCccc-cEEecc----HHHHHHcCCCCCcCcCCCccchHHHHHHHHcCCcEEcCCCccccceeEEeccccccccCCcc
Confidence            5555555 666665    7777 99999999999999999999999999999999986 69999999999887654432 


Q ss_pred             -ccccccc-CCcccccccchhhhHHH----HHhhCCcCe
Q psy6979          85 -FFPHSIS-EGHPFNRASLFNVGYAE----AIKIREFDC  117 (167)
Q Consensus        85 -~~v~~q~-~~~~fNR~~LlNvg~~e----al~~~~~~~  117 (167)
                       .+...+. ...++..++|.|+.|..    .+++.+.||
T Consensus       229 ~k~~~~~~~~~~r~~~dGLnsl~Y~v~s~~~~~i~~~~~  267 (287)
T 3lw6_A          229 QKCFNQKEMTRKRDHKTGLDNVKYKILKVHEMLIDQVPV  267 (287)
T ss_dssp             CCCTTHHHHHTSCCSSCSGGGCCEEEEEEEEEEETTEEE
T ss_pred             cchhhhhhhhcEEccCCCCeeeEEEEEEEEEEEecCCCc
Confidence             2333322 45667777888887762    223455565

>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...

Probab=99.58  E-value=7.2e-17  Score=135.73  Aligned_cols=101  Identities=28%  Similarity=0.522  Sum_probs=76.6

Q ss_pred             CCCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCCCceeeeccccccccCCCCCCcccccccC-Ccccccccch
Q psy6979          25 WDKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEKANPQSSFFPHSISE-GHPFNRASLF  102 (167)
Q Consensus        25 ~~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~~i~rY~ml~H~~d~~Npq~~~~v~~q~~-~~~fNR~~Ll  102 (167)
                      +++++ +||||++.|+|||+||.||..|+..+|+++.|++...++|.|+.|.++..+.+++.+...+.. ..++.++++.
T Consensus       182 rr~~f~~vgGFde~~~g~g~ED~Dl~~Rl~~~G~~i~~~~~~~~~~~~i~H~~~~~~~~n~~~~~~l~~~~~~~~~~Gl~  261 (287)
T 2fy7_A          182 SKQQFLTINGFPNNYWGWGGEDDDIFNRLVFRGMSISRPNAVVGTTRHIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLN  261 (287)
T ss_dssp             EHHHHHHTTSCCSCCSSCSCHHHHHHHHHHHTTCCCBCCCTTTCEEEECC---------CCCCCCCHHHHHHHTTTSSGG
T ss_pred             EHHHHHHcCCCCccccccccchHHHHHHHHHcCCeEEecCcccceeEEEecCCCcccCCCHHHHHHHhhcccEEcCCCcc
Confidence            37777 999999999999999999999999999999998877899999999988765555554554443 4556677766


Q ss_pred             hhhHHHHHhhCCcCeEEEEeeccc
Q psy6979         103 NVGYAEAIKIREFDCFIFHDVDLI  126 (167)
Q Consensus       103 Nvg~~eal~~~~~~~~~~hdVDLl  126 (167)
                      ++.|. .++....++||++.||+-
T Consensus       262 ~~~y~-~~~~~~~~l~t~~~v~~~  284 (287)
T 2fy7_A          262 SLTYQ-VLDVQRYPLYTQITVDIG  284 (287)
T ss_dssp             GCCCE-EEEEEEETTEEEEEEECC
T ss_pred             cCceE-EEEEEeccCeEEEEEEec
Confidence            66665 667889999999999994

>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...

Probab=98.89  E-value=1.2e-09  Score=91.64  Aligned_cols=86  Identities=45%  Similarity=0.861  Sum_probs=77.7

Q ss_pred             CCCCcccccccCCcccccccchhhhHHHHHhhCCcCeEEEEeecccccCCCCccccCCcceeeeeecccccccCCCCcce
Q psy6979          81 PQSSFFPHSISEGHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLPYASLF  160 (167)
Q Consensus        81 pq~~~~v~~q~~~~~fNR~~LlNvg~~eal~~~~~~~~~~hdVDLlP~~~~n~Y~c~~~p~Hls~~~~~~~y~~~y~~~~  160 (167)
                      +.+.+.++.++.+..|+++..+|.|+.++++....++++|+|+|.+|+.+.+.|.|...|+|++..+++++|++||..++
T Consensus        96 ~~~EIiVVdds~d~~f~~a~a~N~G~~~al~~A~gd~i~flD~D~i~~~d~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  175 (287)
T 2fy7_A           96 LDYGIYVINQAGDTIFNRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMNDHNAYRCFSQPRHISVAMDKFGFSLPYVQYF  175 (287)
T ss_dssp             CEEEEEEEEECSSSCCCHHHHHHHHHHHHHHHSCCCEEEEECTTEEESBTTSCCSCCSSCEECCCEEGGGTTSCSSTTCC
T ss_pred             CCceEEEEEeCCCCccchhhhhhhHHHHHHHhCCCCEEEEECCCcccCCCcceEecCCCCceEEEeecccccCCCcCcee
Confidence            44556777777778899999999999888877889999999999999999999999999999999999999999999999


Q ss_pred             eeeeee
Q psy6979         161 GGVSNI  166 (167)
Q Consensus       161 GGv~~~  166 (167)
                      ||++++
T Consensus       176 G~~~~~  181 (287)
T 2fy7_A          176 GGVSAL  181 (287)
T ss_dssp             CSEEEE
T ss_pred             eeEEEE
Confidence            999876

>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*

Probab=95.45  E-value=0.0055  Score=54.70  Aligned_cols=38  Identities=26%  Similarity=0.428  Sum_probs=33.8

Q ss_pred             CCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCC
Q psy6979          26 DKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYP   63 (167)
Q Consensus        26 ~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~   63 (167)
                      ++.+ +++||++.|..||+||.|+..|+..+|.++...+
T Consensus       285 r~~l~~iGgfde~~~~~g~ED~dl~~Rl~~~G~~i~~~p  323 (625)
T 2z86_A          285 KKWLFRAGWFDEEFTHWGGEDNEFGYRLYREGCYFRSVE  323 (625)
T ss_dssp             THHHHHHCCCCTTCSSCCCHHHHHHHHHHHTTCEEEECG
T ss_pred             HHHHHHhCCCccccccCCcchhhhhhhHHhCCceEEEcc
Confidence            6666 8999999999999999999999999999887643

>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17

Probab=95.04  E-value=0.0079  Score=51.93  Aligned_cols=37  Identities=19%  Similarity=0.235  Sum_probs=32.9

Q ss_pred             CCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeC
Q psy6979          26 DKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRY   62 (167)
Q Consensus        26 ~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~   62 (167)
                      ++.+ +++||++.|..||+||.||..|+..+|.++...
T Consensus       213 r~~~~~iGgfde~~~~~g~ED~dl~~R~~~~G~~i~~~  250 (472)
T 1xhb_A          213 RDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIV  250 (472)
T ss_dssp             HHHHHHTTSCCTTSCTTCCCCSHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHcCCCCCcccccCchhHHHHHHHHhcCCeEEEc
Confidence            4445 899999999999999999999999999988764

>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*

Probab=94.37  E-value=0.0095  Score=53.42  Aligned_cols=37  Identities=24%  Similarity=0.313  Sum_probs=33.0

Q ss_pred             CCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeC
Q psy6979          26 DKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRY   62 (167)
Q Consensus        26 ~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~   62 (167)
                      ++.+ +|+||++.|..||+||.||..|+..+|.++...
T Consensus       293 r~~~~~iGgfDe~~~~~g~ED~dl~~Rl~~~G~~i~~~  330 (570)
T 2d7i_A          293 RKWFWELGGYDPGLEIWGGEQYEISFKVWMCGGRMEDI  330 (570)
T ss_dssp             HHHHHHTTSSCTTCCSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHhcCCCCCcccccCcchHHHHHHHHhCCCeEEEc
Confidence            4445 899999999999999999999999999998764

>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*

Probab=94.24  E-value=0.033  Score=44.24  Aligned_cols=32  Identities=13%  Similarity=-0.041  Sum_probs=29.4

Q ss_pred             cCCCCCCCCCCCCCChHHHHHHHhcCcceeeC
Q psy6979          31 VNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRY   62 (167)
Q Consensus        31 vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~   62 (167)
                      ++||++.+-||..||.|+..|++.+|.++...
T Consensus       165 ~~gFDe~~~~~~~~D~Dl~~R~~~~G~~~~~~  196 (249)
T 2nxv_A          165 PVLNSYDMQGFHYYGADLCLQAEFLGGRAYAI  196 (249)
T ss_dssp             CCCCCSSCCSSSSHHHHHHHHHHHTTCEEEEC
T ss_pred             hCCCCCCCCCcceehhHHHHHHHHcCCeEEEe
Confidence            78999999999999999999999999988765

>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*

Probab=93.50  E-value=0.018  Score=50.34  Aligned_cols=37  Identities=22%  Similarity=0.188  Sum_probs=32.8

Q ss_pred             CCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeC
Q psy6979          26 DKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRY   62 (167)
Q Consensus        26 ~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~   62 (167)
                      ++.+ +|+||++.|..||+||.||..|+..+|.++...
T Consensus       245 r~~~~~iGgfde~~~~~g~ED~dl~~Rl~~~G~~i~~~  282 (501)
T 2ffu_A          245 KFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEII  282 (501)
T ss_dssp             HHHHHHTTCCCTTCCSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHhCCCCccccccCcchHHHHHHHHhcCCeEEEc
Confidence            4445 899999999999999999999999999988764

>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}

Probab=87.05  E-value=0.31  Score=37.04  Aligned_cols=43  Identities=19%  Similarity=0.081  Sum_probs=29.4

Q ss_pred             CCCc-ccC-CCCCCCCCCCCCChHHHHHHHhcCcceeeCCCCceee
Q psy6979          26 DKDQ-LVN-GFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKY   69 (167)
Q Consensus        26 ~~~~-~vN-Gf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~~i~rY   69 (167)
                      ++.+ +++ ||++.+. +.+||.|+..|+..+|.++...+..+..|
T Consensus       180 r~~~~~~g~~f~~~~~-~~~eD~~~~~r~~~~g~~i~~~~~~~~~y  224 (240)
T 3bcv_A          180 RNLIEKKHLRFVSERI-LPSEDLIFNVDVLANSNIVCVLPQTFYNY  224 (240)
T ss_dssp             HHHHHHTTCCCCCTTT-CTTHHHHHHHHHHTTCSCEEECC------
T ss_pred             HHHHHHcCCccCCCCC-ccCCCHHHHHHHHHhCCEEEEECCCeEEE
Confidence            3344 788 9999865 34599999999999999888765544444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	167
d1pzta_	271	c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4Ga	4e-21
d1pzta_	271	c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4Ga	4e-16

>d1pzta_ c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4GalT1) {Cow (Bos taurus) [TaxId: 9913]} Length = 271

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: beta 1,4 galactosyltransferase (b4GalT1)
domain: beta 1,4 galactosyltransferase (b4GalT1)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.1 bits (210), Expect = 4e-21
 Identities = 39/73 (53%), Positives = 50/73 (68%)

Query: 95  PFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRL 154
            FNRA L NVG+ EA+K  +++CF+F DVDLIP +D N Y C   PRH+SVA+D   + L
Sbjct: 94  MFNRAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHNTYRCFSQPRHISVAMDKFGFSL 153

Query: 155 PYASLFGGVSNIY 167
           PY   FGGVS + 
Sbjct: 154 PYVQYFGGVSALS 166

>d1pzta_ c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4GalT1) {Cow (Bos taurus) [TaxId: 9913]} Length = 271

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: beta 1,4 galactosyltransferase (b4GalT1)
domain: beta 1,4 galactosyltransferase (b4GalT1)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.2 bits (174), Expect = 4e-16
 Identities = 24/53 (45%), Positives = 32/53 (60%)

Query: 29  QLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEKANP 81
             +NGF N YWG GGEDDD+ NR+   G+ + R    I K  M+RH ++K N 
Sbjct: 171 LSINGFPNNYWGAGGEDDDIYNRLAFRGMSVSRPNAVIGKTRMIRHSRDKKNE 223

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	167
d1pzta_	271	beta 1,4 galactosyltransferase (b4GalT1) {Cow (Bos	99.87
d1pzta_	271	beta 1,4 galactosyltransferase (b4GalT1) {Cow (Bos	99.86
d1xhba2	328	Polypeptide N-acetylgalactosaminyltransferase 1, N	96.97

>d1pzta_ c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4GalT1) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: beta 1,4 galactosyltransferase (b4GalT1)
domain: beta 1,4 galactosyltransferase (b4GalT1)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.87  E-value=2.1e-23  Score=173.60  Aligned_cols=89  Identities=44%  Similarity=0.832  Sum_probs=84.0

Q ss_pred             CCCCCCcccccccCCcccccccchhhhHHHHHhhCCcCeEEEEeecccccCCCCccccCCcceeeeeecccccccCCCCc
Q psy6979          79 ANPQSSFFPHSISEGHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLPYAS  158 (167)
Q Consensus        79 ~Npq~~~~v~~q~~~~~fNR~~LlNvg~~eal~~~~~~~~~~hdVDLlP~~~~n~Y~c~~~p~Hls~~~~~~~y~~~y~~  158 (167)
                      +...+.+++++|.++.+||||.|+|+||.+|.+...++|++||||||+|+++++.|.|+++|+|++.++++++|+++|..
T Consensus        78 q~~~y~I~vieQ~~~~~FNRg~llNiGf~~a~~~~~~~~~ifHDVDllP~~~~~~Y~~~~~p~h~~~~~~~~~~~~~y~~  157 (271)
T d1pzta_          78 QQLDYGIYVINQAGESMFNRAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHNTYRCFSQPRHISVAMDKFGFSLPYVQ  157 (271)
T ss_dssp             TTCEEEEEEEEECSSSCCCHHHHHHHHHHHHHHHSCCCEEEEECTTEEESBTTSCCSCCSSCEECCCEEGGGTTSCSCTT
T ss_pred             cCCCEEEEEEeccCCcchhhhhhhhHHHHHhhhccCccEEEEecCCcCcccccccccccccCcceeeecccccccccccc
Confidence            34456689999999999999999999999999989999999999999999999999999999999999999999999999


Q ss_pred             ceeeeeeeC
Q psy6979         159 LFGGVSNIY  167 (167)
Q Consensus       159 ~~GGv~~~~  167 (167)
                      +||||++|.
T Consensus       158 ~~GGv~~~~  166 (271)
T d1pzta_         158 YFGGVSALS  166 (271)
T ss_dssp             CCCSEEEEE
T ss_pred             ccceeeeec
Confidence            999999873

>d1pzta_ c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4GalT1) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: beta 1,4 galactosyltransferase (b4GalT1)
domain: beta 1,4 galactosyltransferase (b4GalT1)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.86  E-value=5.8e-24  Score=177.08  Aligned_cols=101  Identities=29%  Similarity=0.506  Sum_probs=84.9

Q ss_pred             CCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCCCCceeeeccccccccCCCCCCcccccccC-Ccccccccchh
Q psy6979          26 DKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEKANPQSSFFPHSISE-GHPFNRASLFN  103 (167)
Q Consensus        26 ~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~~~i~rY~ml~H~~d~~Npq~~~~v~~q~~-~~~fNR~~LlN  103 (167)
                      ++++ +||||||.|||||+|||||..|+..+|+++.|++..+++|+|+.|.++..++.+..+...+.. ..++...+|.|
T Consensus       167 k~~f~kINGfsN~ywGWGgEDddl~~R~~~~g~~i~R~~~~~~~y~~l~H~~d~~~~~n~~r~~~l~~~~~~~~~dGLns  246 (271)
T d1pzta_         167 KQQFLSINGFPNNYWGAGGEDDDIYNRLAFRGMSVSRPNAVIGKTRMIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNS  246 (271)
T ss_dssp             HHHHHHTTSCCSCCCSSSSHHHHHHHHHHHTTCCCBCCCTTTTEEEECCCSSCCCCCCCCCCCCCHHHHHHHTTTSSGGG
T ss_pred             HHHHhhcCCCCccccCCccccHHHHHHHHHcCCeEEccCCCccccceeeccCCcccccchHHHHHHHHHhhcccCCCCcc
Confidence            5666 999999999999999999999999999999999999999999999999988877766655553 45555556555


Q ss_pred             hhHHHHHhhCCcCeEEEEeecccc
Q psy6979         104 VGYAEAIKIREFDCFIFHDVDLIP  127 (167)
Q Consensus       104 vg~~eal~~~~~~~~~~hdVDLlP  127 (167)
                      +-|. .++.+..++|+.+.||+-+
T Consensus       247 l~Y~-v~~~~~~~lyt~i~Vdi~~  269 (271)
T d1pzta_         247 LTYM-VLEVQRYPLYTKITVDIGT  269 (271)
T ss_dssp             CCCE-EEEEEECSSCEEEEEECCS
T ss_pred             eEEE-EeEEEecCCeEEEEEEccC
Confidence            5555 6778899999999999954

>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.97  E-value=0.00013  Score=57.87  Aligned_cols=38  Identities=18%  Similarity=0.230  Sum_probs=33.9

Q ss_pred             CCCc-ccCCCCCCCCCCCCCChHHHHHHHhcCcceeeCC
Q psy6979          26 DKDQ-LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYP   63 (167)
Q Consensus        26 ~~~~-~vNGf~n~~wgwG~ED~d~~~R~~~~g~~~~r~~   63 (167)
                      ++.+ +|+||++.|-.||+||.||..|+..+|.++.-.|
T Consensus       206 r~~f~~vGgfDe~~~~~g~ED~Dl~~R~~~~G~~i~~~p  244 (328)
T d1xhba2         206 RDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVT  244 (328)
T ss_dssp             HHHHHHTTSCCTTSCTTCCCCSHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHhCCCCCCCcCcCchHHHHHHHHHHhCCeEEEeC
Confidence            5555 8999999999999999999999999999887643